Identification Tags
 Collection Date; Submission Date
 Country; Name
 Mutations

EPI_ISL_402123 GWHABKF00000001 MT019529
 2019-12-24 2020-01-11
 China BetaCoV/Wuhan/IPBCAMS-WH-01/2019
 A3778G A8388G T8987A AAAA29900-

EPI_ISL_402123 GWHABKF00000001 MT019529
 2019-12-24 2020-01-11
 China BetaCoV/Wuhan/IPBCAMS-WH-01/2019
 A3778G A8388G T8987A AAAA29900-

EPI_ISL_406798 CNA0007332 LR757998 NMDC60013002-01
 2019-12-26 2020-01-30
 China WH01
 ATTAAAGGTTTATACCTTCCCAGGT1- C6968A T11764A AAAAAAAAAAAA29892-

EPI_ISL_406798 CNA0007332 LR757998 NMDC60013002-01
 2019-12-26 2020-01-30
 China WH01
 ATTAAAGGTTTATACCTTCCCAGGT1- C6968A T11764A AAAAAAAAAAAA29892-

EPI_ISL_406798 CNA0007332 LR757998 NMDC60013002-01
 2019-12-26 2020-01-30
 China WH01
 ATTAAAGGTTTATACCTTCCCAGGT1- C6968A T11764A AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_402119 NMDC60013084-01
 2019-12-30 2020-01-10
 China BetaCoV/Wuhan/IVDC-HB-01/2019
 AAAAAAAAAAAA29892-

EPI_ISL_402121 NMDC60013086-01
 2019-12-30 2020-01-10
 China BetaCoV/Wuhan/IVDC-HB-05/2019
 G20670A G20679A AAAAAAAAAAAA29892-

EPI_ISL_402124 GWHABKL00000001 MN996528
 2019-12-30 2020-01-11
 China WIV04
 AAAAAAAAAAAA29892-

EPI_ISL_402124 GWHABKL00000001 MN996528
 2019-12-30 2020-01-11
 China WIV04
 AAAAAAAAAAAA29892-

EPI_ISL_402127 GWHABKK00000001 MN996527
 2019-12-30 2020-01-18
 China WIV02
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- G21316A A24325G TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_402127 GWHABKK00000001 MN996527
 2019-12-30 2020-01-18
 China WIV02
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- G21316A A24325G TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_402128 GWHABKM00000001 MN996529
 2019-12-30 2020-01-18
 China WIV05
 ATTAAAGGTTTA1- G7016A A21137G AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_402128 GWHABKM00000001 MN996529
 2019-12-30 2020-01-18
 China WIV05
 ATTAAAGGTTTA1- G7016A A21137G AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_402129 GWHABKN00000001 MN996530
 2019-12-30 2020-01-18
 China WIV06
 ATTAAAGGTTTATA1- ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_402129 GWHABKN00000001 MN996530
 2019-12-30 2020-01-18
 China WIV06
 ATTAAAGGTTTATA1- ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_402130 GWHABKO00000001 MN996531
 2019-12-30 2020-01-18
 China WIV07
 ATTAAAGGTTTAT1- A8001C C9534T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_402130 GWHABKO00000001 MN996531
 2019-12-30 2020-01-18
 China WIV07
 ATTAAAGGTTTAT1- A8001C C9534T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_402132 NMDC60013088-01
 2019-12-30 2020-01-19
 China BetaCoV/Wuhan/HBCDC-HB-01/2019
 ATTAAAGGTTT1- T21656A AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_403929 GWHABKI00000001 MT019532
 2019-12-30 2020-01-21
 China BetaCoV/Wuhan/IPBCAMS-WH-04/2019
 AAAAAAAAAAAAA29891-

EPI_ISL_403929 GWHABKI00000001 MT019532
 2019-12-30 2020-01-21
 China BetaCoV/Wuhan/IPBCAMS-WH-04/2019
 AAAAAAAAAAAAA29891-

EPI_ISL_403930 GWHABKH00000001 MT019531
 2019-12-30 2020-01-21
 China BetaCoV/Wuhan/IPBCAMS-WH-03/2019
 T6996C AAAA29900-

EPI_ISL_403930 GWHABKH00000001 MT019531
 2019-12-30 2020-01-21
 China BetaCoV/Wuhan/IPBCAMS-WH-03/2019
 T6996C AAAA29900-

EPI_ISL_403931 GWHABKG00000001 MT019530
 2019-12-30 2020-01-21
 China BetaCoV/Wuhan/IPBCAMS-WH-02/2019
 T104A TT111CG CT119GC G124A AAAAAAAAAAAAAA29890-

EPI_ISL_403931 GWHABKG00000001 MT019530
 2019-12-30 2020-01-21
 China BetaCoV/Wuhan/IPBCAMS-WH-02/2019
 T104A TT111CG CT119GC G124A AAAAAAAAAAAAAA29890-

EPI_ISL_412898 NMDC60013090-01
 2019-12-30 2020-02-28
 China BetaCoV/Wuhan/HBCDC-HB-02/2019
 ATTAAAGGTTT1- A24325G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_412899 NMDC60013091-01
 2019-12-30 2020-02-28
 China BetaCoV/Wuhan/HBCDC-HB-03/2019
 ATTAAAGGTTT1- AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_412900 NMDC60013092-01
 2019-12-30 2020-02-28
 China BetaCoV/Wuhan/HBCDC-HB-04/2019
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAGATGGAGAGCCTTGTCCCTGGTTTCAACGAGAAAACACACGTCCAACTCAGTTTGCCTGTTTTACAGGTTCGCGACGTGCTCGTACGTGGCTTTGGAGACTCCGTGGAGGAGGTCTTATCAGAGGCACGTCAACATCTTAAAGATGGCACTTGTGGCTTAGTAGAAGTTGAAAAAGGCGTTTTGCCTCAACTTGAACAGCCCTATGTGTTCATCAAACGTTCGGATGCTCGAACTGCACCTCATGGTCATGTTATGGTTGAGCTGGTAGCAGAACTCGAAGGCATTCAGTACGGTCGT1- G765C A2215C T4608A C4628G G4631C TTAAATTTGGAAGAAGCTGCTCGGTATATGAGATCTCTCAAAGTGCCAGCTACAGTTTCTGTTTCTTCACCTGATGCTGTTACAGCGTATAATGGTTA4634C T4732C AC4736TT T4747C C4763G T6006C T6820C A6837C T6976A T6978A T6980C G6986C T6988A C7006A T9316A GT9324AA G9648C G9653C A9826C T9831C T9861G T21656G A24325G G28597C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_434534
 2019-12-30 2020-04-28
 China hCoV-19/Wuhan/IVDC-HB-GX02/2019
 A24325G AAAAAAAAAAA29893-

MT291826 GWHABKZ01000001
 2019-12-30 2020-02-25
 China SARS-CoV-2/Wuhan_IME-WH01/human/2019/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTG1- T4946C C8782T T28144C AAAAAAAA29896-

MT291827 GWHACAT01000001
 2019-12-30 2020-03-02
 China SARS-CoV-2/Wuhan_IME-WH02/human/2019/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- AAAAAAAA29896-

MT291828 GWHACAU01000001
 2019-12-30 2020-03-02
 China SARS-CoV-2/Wuhan_IME-WH03/human/2019/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- A24325G AAAAAAAA29896-

MT291829 GWHACAV01000001
 2019-12-30 2020-03-02
 China SARS-CoV-2/Wuhan_IME-WH04/human/2019/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTG1- AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

MT291830 GWHACAW01000001
 2019-12-30 2020-03-02
 China SARS-CoV-2/Wuhan_IME-WH05/human/2019/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTG1- AAAAAAAA29896-

NMDC60013002-06
 2019-12-30 2020-01-28
 China BetaCoV/Wuhan/WH19008/2019 
 A24325G AAAAAAAAAAAA29892-

NMDC60013002-08
 2019-12-30 2020-01-28
 China BetaCoV/Wuhan/WH19001/2019
 AAAAAAAAAAAA29892-

NMDC60013002-10
 2019-12-30 2020-01-28
 China BetaCoV/Wuhan/WH19005/2019
 G20670A G20679A AAAAAAAAAAAA29892-

EPI_ISL_402120 NMDC60013085-01
 2020-01-01 2020-01-11
 China BetaCoV/Wuhan/IVDC-HB-04/2020
 C27493T C28253T AAAAAAA29897-

EPI_ISL_403928 GWHABKJ00000001 MT019533
 2020-01-01 2020-01-21
 China BetaCoV/Wuhan/IPBCAMS-WH-05/2020
 G7866T AAAAAAAAAAAAAAAAAAAA29884-

EPI_ISL_403928 GWHABKJ00000001 MT019533
 2020-01-01 2020-01-21
 China BetaCoV/Wuhan/IPBCAMS-WH-05/2020
 G7866T AAAAAAAAAAAAAAAAAAAA29884-

EPI_ISL_406800 CNA0007334 LR757996 NMDC60013002-03
 2020-01-01 2020-01-30
 China WH03
 ATTAAAGGTTTATACCTTCC1- AAAAAAAAAAAAAAA29889-

EPI_ISL_406800 CNA0007334 LR757996 NMDC60013002-03
 2020-01-01 2020-01-30
 China WH03
 ATTAAAGGTTTATACCTTCC1- AAAAAAAAAAAAAAA29889-

EPI_ISL_406800 CNA0007334 LR757996 NMDC60013002-03
 2020-01-01 2020-01-30
 China WH03
 ATTAAAGGTTTATACCTTCC1- AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_408514 NMDC60013073-01
 2020-01-01 2020-02-09
 China Wuhan/IVDC-HB-envF13-20/2020
 C15T C48A AAAAAAAAAAAA29892-

EPI_ISL_408515 NMDC60013074-01
 2020-01-01 2020-02-09
 China Wuhan/IVDC-HB-envF13-21/2020
 C48A A12350C A29019T AAAAAAAAAAAA29892-

NMDC60013002-09
 2020-01-01 2020-01-28
 China BetaCoV/Wuhan/WH19004/2020
 C27493T C28253T AAAAAAA29897-

EPI_ISL_406716 MN988668
 2020-01-02 2020-01-23
 China 2019-nCoV WHU01
 A1- AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_406717 MN988669
 2020-01-02 2020-01-23
 China 2019-nCoV WHU02
 A1- AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_514752 MT034054
 2020-01-03 2020-02-09
 China SARS-CoV-2/human/CHN/Beijing-01/2020
 ATTAAAGGTTT1- T13270C -A29859TCCG GAA29864TCC CAA29870TTT A29876C A29878GCCTCTTCCTC A29880T AAAAAAAAAAAAAAAAAAAAAA29882CT

EPI_ISL_529972
 2020-01-04 2020-09-10
 Spain hCoV-19/Spain/MD-H12-37/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_406801 CNA0007335 LR757995 NMDC60013002-04
 2020-01-05 2020-01-30
 China WH04
 ATTAAAGGTTTATAC1- C16T C8782T T28144C AAAAAAAAAAAAAAAA29888-

EPI_ISL_406801 CNA0007335 LR757995 NMDC60013002-04
 2020-01-05 2020-01-30
 China WH04
 ATTAAAGGTTTATAC1- C16T C8782T T28144C AAAAAAAAAAAAAAAA29888-

EPI_ISL_406801 CNA0007335 LR757995 NMDC60013002-04
 2020-01-05 2020-01-30
 China WH04
 ATTAAAGGTTTATAC1- C16T C8782T T28144C C29854T T29856A TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_434692
 2020-01-05 2020-05-01
 Thailand hCoV-19/Thailand/NIH-15/2020
 ATTAAAGGTTT1- TATACATGTCTCTGGGACCAATGG21763- CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_529973
 2020-01-05 2020-09-10
 Spain hCoV-19/Spain/MD-H12-38/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G C25480T C27005T G29734C ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_529974
 2020-01-06 2020-09-10
 Spain hCoV-19/Spain/MD-H12-39/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T AAC1966- C3037T C4002T A6248C C6813T C14408T A20268G A23403G G26834T G28230T ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_529975
 2020-01-07 2020-09-10
 Spain hCoV-19/Spain/MD-H12-40/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2890C C3037T C14408T A20268G A23403G G29734C G29759T ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

NMDC60013002-07
 2020-01-07 2020-01-28
 China BetaCoV/Wuhan/YS8011/2020 
 A29869- AAAAAAAAAAAA29892-

EPI_ISL_403962
 2020-01-08 2020-01-17
 Thailand hCoV-19/Thailand/61/2020
 ATTAAAGGTTT1- AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_411957 MT093631
 2020-01-08 2020-02-21
 China SARS-CoV-2/human/CHN/WH-09/2020
 ATTAAAGGTTTAT1- C186T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_412459 NMDC60013089-01
 2020-01-08 2020-02-26
 China BetaCoV/Jingzhou/HBCDC-HB-01/2020
 ATTAAAGGTTT1- C18828T C26370T C27944T C28093T G28183A AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_437623 MT447155
 2020-01-08 2020-05-01
 Thailand SARS-CoV-2/human/THA/SI200040-NT/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_529976
 2020-01-08 2020-09-10
 Spain hCoV-19/Spain/MD-H12-41/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G G29734C ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_529977
 2020-01-09 2020-09-10
 Spain hCoV-19/Spain/MD-H12-42/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10747T C14408T A20268G A23403G G29734C ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_406030 MN938384
 2020-01-10 2020-01-14
 China 2019-nCoV_HKU-SZ-002a_2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C8782T T28144C C29095T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_450500 GWHACDE01000001 MT259226
 2020-01-10 2020-03-26
 China SARS-CoV-2/Wuhan_OS52/human/2020/CHN
 ATTAAAGGTTTATA1- T565C C17825T T27384C G29573A G29861A G29868C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_529978
 2020-01-10 2020-09-10
 Spain hCoV-19/Spain/MD-H12-43/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9474T C14408T A20268G A23403G C29218T G29734C ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_405839 MN975262
 2020-01-11 2020-01-21
 China 2019-nCoV_HKU-SZ-005b_2020
 C8782T C9561T T15607C T28144C C29095T AAAAAAAAAAAA29892-

EPI_ISL_408486 NMDC60013081-01
 2020-01-11 2020-02-09
 China Jiangxi/IVDC-JX-002/2020
 G8274A AAAAAAAAAAAA29892-

EPI_ISL_421252
 2020-01-11 2020-04-07
 China hCoV-19/Pingxiang/JX5/2020
 ATTAAAGGTTTATACCTTCCCAGG1- G8274A AAAAAAAAAAAA29892-

EPI_ISL_403963
 2020-01-13 2020-01-17
 Thailand hCoV-19/Thailand/74/2020
 ATTAAAGGTTT1- AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_406592
 2020-01-13 2020-01-29
 China hCoV-19/Shenzhen/SZTH-001/2020
 C1648T T2169C A3801C A4644G G4656C GT4728TA T4739C T5464C A6308G C6786G T6834G A6838G T8091A T8455C T12597A T15636A C19269T T20315A G24947C A25347G A26108T A26141T G26755C A26759T T28144C C29095T AAAAAAAAAAAA29892-

EPI_ISL_406593
 2020-01-13 2020-01-29
 China hCoV-19/Shenzhen/SZTH-002/2020
 C8782T T28144C C29095T AAAAAAAAAAAA29892-

EPI_ISL_410301 MT072688
 2020-01-13 2020-02-14
 Nepal SARS-CoV-2/human/NPL/61-TW/2020
 ATTAAAGGTTTATAC1- C24034T AGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29827-

EPI_ISL_447909
 2020-01-13 2020-05-19
 Thailand hCoV-19/Thailand/Nonthaburi_59/2020
 AAAAAAAAAAAA29892-

EPI_ISL_529979
 2020-01-13 2020-09-10
 Spain hCoV-19/Spain/MD-H12-46/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- GGTCTT1598- C7967T C8782T C16694T C26088T T28144C ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_403932 NMDC60013005-01
 2020-01-14 2020-01-22
 China BetaCoV/Guangdong/20SF012/2020
 ATTAAAGGTTT1- C8782T T28144C C29095T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_529980
 2020-01-14 2020-09-10
 Spain hCoV-19/Spain/MD-H12-47/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G C27476T G29734C ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_403933 NMDC60013006-01
 2020-01-15 2020-01-22
 China BetaCoV/Guangdong/20SF013/2020
 ATTAAAGGTTT1- C8782T T28144C C29095T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_403934 NMDC60013007-01
 2020-01-15 2020-01-22
 China BetaCoV/Guangdong/20SF014/2020
 ATTAAAGGTTT1- T23569C CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_403935 NMDC60013008-01
 2020-01-15 2020-01-22
 China BetaCoV/Guangdong/20SF025/2020
 ATTAAAGGTTT1- C8782T T28144C C29095T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_408484 NMDC60013079-01
 2020-01-15 2020-02-09
 China Sichuan/IVDC-SC-001/2020
 C8782T T19190A C24034T T26729C G28077C T28144C AAAAAAAAAAAA29892-

EPI_ISL_447910
 2020-01-15 2020-05-19
 Thailand hCoV-19/Thailand/Nonthaburi_68/2020
 AAAAAAAAAAAA29892-

EPI_ISL_529981
 2020-01-15 2020-09-10
 Spain hCoV-19/Spain/MD-H12-48/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G15438T A20268G A23403G C26447T ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_404227 NMDC60013099-01
 2020-01-16 2020-01-21
 China BetaCoV/Zhejiang/WZ-01/2020
 ATTAAAGGTTTATACCTTC1- A31G C583T TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_406594
 2020-01-16 2020-01-29
 China hCoV-19/Shenzhen/SZTH-003/2020
 A1CCAGAAGAA C27577T C28854T AAAAAAAAAAAA29892-

EPI_ISL_406595
 2020-01-16 2020-01-29
 China hCoV-19/Shenzhen/SZTH-004/2020
 A1CCAGAAGAA G709A T6846C A11707G A19959C A22622G G22652T T23569C T25645C C28716T AAAAAAAAAAAA29892-

EPI_ISL_434693
 2020-01-16 2020-05-01
 Thailand hCoV-19/Thailand/NIH-59/2020
 ATTAAAG1- C13035Y T26258K CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_529982
 2020-01-16 2020-09-10
 Spain hCoV-19/Spain/MD-H12-49/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G G29734C ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_403936 NMDC60013010-01
 2020-01-17 2020-01-22
 China BetaCoV/Guangdong/20SF028/2020
 ATTAAAGGTTT1- C21707T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_404228 NMDC60013100-01
 2020-01-17 2020-01-21
 China BetaCoV/Zhejiang/WZ-02/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- AAAAAAAAAAAAAAAAAA29886-

EPI_ISL_408480 NMDC60013075-01
 2020-01-17 2020-02-09
 China Yunnan/IVDC-YN-003/2020
 C8782T G11083T T28144C AAAAAAAAAAAA29892-

EPI_ISL_412978 NMDC60013093-01
 2020-01-17 2020-03-02
 China BetaCoV/Wuhan/HBCDC-HB-02/2020
 ATTAAAGGTTTAT1- C8782T C12141A C23816T T28144C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_529983
 2020-01-17 2020-09-10
 Spain hCoV-19/Spain/MD-H12-50/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T9477A C14805T A22151G G25979T T28144C C28657T C28863T ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_539333
 2020-01-17 2020-09-16
 China hCoV-19/Hunan/HN-CIDC-P2/2020
 T25525A

MT049951
 2020-01-17 2020-02-09
 China SARS-CoV-2/human/CHN/Yunnan-01/2020
 C75A C8782T G11083C T21644A T28144C

MW011762
 2020-01-17 2020-09-16
 China SARS-CoV-2/human/CHN/P2-SARS-CoV-2/2020
 T25525A

EPI_ISL_403937
 2020-01-18 2020-01-22
 China hCoV-19/Guangdong/20SF040/2020
 ATTAAAGGTTT1- C21707T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_408481 NMDC60013076-01
 2020-01-18 2020-02-09
 China Chongqing/IVDC-CQ-001/2020
 G11083T AAAAAAAAAAAA29892-

EPI_ISL_408485 NMDC60013080-01
 2020-01-18 2020-02-09
 China BetaCoV/Beijing/IVDC-BJ-005/2020
 A4- C8782T C17002T C24034T GTTTT24140CAAAA T24471C T25652A T26729C G26834T G28077C T28144C AAAAAAAAAAAA29892-

EPI_ISL_412979 NMDC60013094-01
 2020-01-18 2020-03-02
 China BetaCoV/Wuhan/HBCDC-HB-03/2020
 ATTAAAGGTTT1- C8782T T28144C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_412980 NMDC60013095-01
 2020-01-18 2020-03-02
 China BetaCoV/Wuhan/HBCDC-HB-04/2020
 ATTAAAGGTTTATA1- C8782T T18996C C24370T T28144C T29029C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_412981 NMDC60013096-01
 2020-01-18 2020-03-02
 China BetaCoV/Wuhan/HBCDC-HB-05/2020
 ATTAAAGGTTTATACC1- G1397A A6528R G11083T T11709A T28688C G29742T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_529984
 2020-01-18 2020-09-10
 Spain hCoV-19/Spain/MD-H12-52/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6968T C14408T A20268G A23403G ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_404895 MN985325
 2020-01-19 2020-01-24
 United States SARS-CoV-2/human/USA/USA-WA1/2020
 C8782T C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_407313
 2020-01-19 2020-02-05
 China hCoV-19/Hangzhou/HZCDC0001/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_408482 NMDC60013077-01
 2020-01-19 2020-02-09
 China BetaCoV/Shandong/IVDC-SD-001/2020
 G1397A C7299T C10789T G11083T C27612G T28688C G29742T AAAAAAAAAAAA29892-

EPI_ISL_408488 NMDC60013082-01
 2020-01-19 2020-02-09
 China Jiangsu/IVDC-JS-001/2020
 T54- T58A AAAAAAAAAAAA29892-

EPI_ISL_529985
 2020-01-19 2020-09-10
 Spain hCoV-19/Spain/MD-H12-53/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

MT233526
 2020-01-19 2020-03-23
 United States SARS-CoV-2/human/USA/USA-WA1/2020
 ATTAAAGGTTTATACCTT1- C8782T C18060T T28144C ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

MT246667
 2020-01-19 2020-03-25
 United States SARS-CoV-2/human/USA/USA-WA1/2020
 ATTA1- C8782T C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871G

MT952134
 2020-01-19 2020-09-02
 United States SARS-CoV-2/human/USA/WA-CDC-WA1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C8782T C18060T T28144C TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_406970 GWHABKS00000001 MT039873
 2020-01-20 2020-02-03
 China SARS-CoV-2/human/Hangzhou/HZ-1/2020
 ATT1- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421235
 2020-01-20 2020-04-07
 China hCoV-19/Hangzhou/HZCDC0013/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G11083T A21282G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_421236
 2020-01-20 2020-04-07
 China hCoV-19/Hangzhou/HZCDC0012/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G11083T A21282G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_428449 NMDC60013112-01
 2020-01-20 2020-04-21
 China hCoV-19/Guangdong/20SF123/2020
 C8782T C18060T T28144C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_479799
 2020-01-20 2020-07-01
 Japan hCoV-19/Japan/PG-0015/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C11752T C19170A TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_479800
 2020-01-20 2020-07-01
 Japan hCoV-19/Japan/PG-0016/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C11752T C19170A A29433G TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_529986
 2020-01-20 2020-09-10
 Spain hCoV-19/Spain/MD-H12-54/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1063T C3037T C14408T A20268G A23403G C25427T G29734C ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

MT226610
 2020-01-20 2020-03-20
 China SARS-CoV-2/human/CHN/KMS1/2020
 G4288T A4307C A7479G C8782T G11083T G11207C T11233G G12041C G12160C G12202C G12208T G12355C G12378A G12464T G12467T G12491T G12514C G12572T G12578T G12582T G12600A G12660C G12685C G12773T G12793T G20980C T21784A T28144C AAAA29900-

EPI_ISL_404253 MN988713
 2020-01-21 2020-01-25
 United States 2019-nCoV/USA-IL1/2020
 T490W C3177Y C8782Y C24034Y T26729Y G28077S T28144Y C28854Y AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_408478
 2020-01-21 2020-02-09
 China hCoV-19/Chongqing/YC01/2020
 C1342T C8782T C18060T T28144C C29200T AAAAAAAAAAAA29892-

EPI_ISL_411060
 2020-01-21 2020-02-19
 China hCoV-19/Fujian/8/2020
 C8782T C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_416389
 2020-01-21 2020-03-20
 China hCoV-19/Shanghai/SH0093/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- G27754T G28851T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_417064
 2020-01-21 2020-03-24
 China hCoV-19/Hong Kong/VB20017970-2/2020
 ATTAAAGGTTTATACCTTCCCAGG1- T28861C TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_418441 MT253701
 2020-01-21 2020-03-27
 China SARS-CoV-2/human/CHN/HZ-48/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

EPI_ISL_418442 MT253702
 2020-01-21 2020-03-27
 China SARS-CoV-2/human/CHN/HZ-49/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

EPI_ISL_418504 MT253708
 2020-01-21 2020-03-27
 China SARS-CoV-2/human/CHN/HZ-79/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

EPI_ISL_418506 MT253709
 2020-01-21 2020-03-27
 China SARS-CoV-2/human/CHN/HZ-90/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

EPI_ISL_418507 MT253710
 2020-01-21 2020-03-27
 China SARS-CoV-2/human/CHN/HZ-91/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

EPI_ISL_421227
 2020-01-21 2020-04-07
 China hCoV-19/Hangzhou/HZCDC0091L/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_421229
 2020-01-21 2020-04-07
 China hCoV-19/Hangzhou/HZCDC0090L/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_421231
 2020-01-21 2020-04-07
 China hCoV-19/Hangzhou/HZCDC0049L/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_421232
 2020-01-21 2020-04-07
 China hCoV-19/Hangzhou/HZCDC0048L/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_421233
 2020-01-21 2020-04-07
 China hCoV-19/Hangzhou/HZCDC0048/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_421234
 2020-01-21 2020-04-07
 China hCoV-19/Hangzhou/HZCDC0025/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C6187T G26144T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_421243
 2020-01-21 2020-04-07
 China hCoV-19/Nanchang/JX14/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C8782T A8924G A8926T T28144C AAAAAAAAAAAA29892-

EPI_ISL_428443 NMDC60013106-01
 2020-01-21 2020-04-21
 China hCoV-19/Guangdong/20SF115/2020
 C8782T C24034T C24099T T26729C G28077C T28144C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_428447 NMDC60013110-01
 2020-01-21 2020-04-21
 China hCoV-19/Guangdong/20SF117/2020
 C8782T C15480T T28144C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_529987
 2020-01-21 2020-09-10
 Spain hCoV-19/Spain/MD-H12-55/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G C27476T G29734C ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_406036 MN994468
 2020-01-22 2020-01-27
 United States 2019-nCoV/USA-CA2/2020
 C17000T G26144T AAAAAAAAAAAAAAAAAAAA29884-

EPI_ISL_406223 MN997409
 2020-01-22 2020-01-28
 United States 2019-nCoV/USA-AZ1/2020
 C8782T G11083T T28144C C29095T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_406531 NMDC60013011-01
 2020-01-22 2020-01-29
 China BetaCoV/Guangdong/20SF174/2020
 ATTAAAGGTTTATACCTTCCCAG1- C21707T TATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29832-

EPI_ISL_406533 NMDC60013012-01
 2020-01-22 2020-01-29
 China BetaCoV/Guangzhou/20SF206/2020
 ATTAAAGGTTTATACCTTCCCAG1- C15324T C29303T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_406534 NMDC60013013-01
 2020-01-22 2020-01-29
 China BetaCoV/Foshan/20SF207/2020
 ATTAAAGGTTTATACCTTCCCAG1- C28291T C28854T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_406535 NMDC60013014-01
 2020-01-22 2020-01-29
 China BetaCoV/Foshan/20SF210/2020
 ATTAAAGGTTTATACCTTCCCAG1- C17373T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_406536 NMDC60013015-01
 2020-01-22 2020-01-29
 China BetaCoV/Foshan/20SF211/2020
 ATTAAAGGTTTATACCTTCCCAG1- C17373T AGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29827-

EPI_ISL_408976
 2020-01-22 2020-02-11
 Australia hCoV-19/Australia/NSW02/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8327T G29449T AGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCT29735- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_411066
 2020-01-22 2020-02-19
 China hCoV-19/Fujian/13/2020
 C17373T G29755A AAAAAAAAAAAA29892-

EPI_ISL_412028 MT644268
 2020-01-22 2020-02-24
 China SARS-CoV-2/human/HKG/VM20001061/2020
 ATTAAAGGTTTAT1- C1663T C8782T G22661T C24034Y T26729C G28077C T28144C G29862T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_415711
 2020-01-22 2020-03-19
 China hCoV-19/Hangzhou/ZJU-05/2020
 -T2AGAGTGCTTAG GG7AT -10TTAATCAGCACGAAGTTCTACTTGCACCA

EPI_ISL_417443
 2020-01-22 2020-03-26
 China hCoV-19/Hong Kong/XM-PII-S4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C1663T C4455T C8782T C21636T G22661T CTAATTCTCCTCGGCGGGCACGTAGTGTAG23595- C24034T G28077C T28144C C29095T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_418267 MT192773
 2020-01-22 2020-03-14
 Vietnam SARS-CoV-2/human/VNM/nCoV-19-02S/2020
 A26- C28T C10232T AAAAAAAAAAAA29892-

EPI_ISL_418269 MT192772
 2020-01-22 2020-03-14
 Vietnam SARS-CoV-2/human/VNM/nCoV-19-01S/2020
 C10232T AAAAAAAAAAAA29892-

EPI_ISL_418502 MT253705
 2020-01-22 2020-03-27
 China SARS-CoV-2/human/CHN/HZ-60/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

EPI_ISL_418503 MT253706
 2020-01-22 2020-03-27
 China SARS-CoV-2/human/CHN/HZ-62/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C16247Y CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

EPI_ISL_421225
 2020-01-22 2020-04-07
 China hCoV-19/Hangzhou/HZCDC0135/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_421226
 2020-01-22 2020-04-07
 China hCoV-19/Hangzhou/HZCDC0119/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_421237
 2020-01-22 2020-04-07
 China hCoV-19/Jiujiang/JX22/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C8782T T28144C AAAAAAAAAAAA29892-

EPI_ISL_421244
 2020-01-22 2020-04-07
 China hCoV-19/Shangrao/JX29/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C8782T T28144C AAAAAAAAAAAA29892-

EPI_ISL_434571 MT230904
 2020-01-22 2020-03-22
 China SARS-CoV-2/human/HKG/HKU-001a/2020
 C1663T C8782T G22661T C24034T T26729C G28077C T28144C AAAAAAAAAAAA29892-

EPI_ISL_434694
 2020-01-22 2020-05-01
 Thailand hCoV-19/Thailand/NIH-162/2020
 ATTAAAGGTTT1- C18885T G19846R CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_449476 MT079843
 2020-01-22 2020-02-18
 China SARS-CoV-2/human/CHN/WHUHnCoV001/2020
 -2ACTGAG A1G AA4GG G7C T10G A12G ACCT14TTTC -20GTTGAAA C2536T C8782T T8886C T28144C

EPI_ISL_449477 MT079844
 2020-01-22 2020-02-18
 China SARS-CoV-2/human/CHN/WHUHnCoV002/2020
 ATT1TCG -7GTTGGTT A12G AC14TA T17C CCC19GGG G23A TA25GT C28T C2536T C8782T T8886C T28144C

EPI_ISL_449478 MT079845
 2020-01-22 2020-02-18
 China SARS-CoV-2/human/CHN/WHUHnCoV003/2020
 A1CCTACAAGAGA TA3CG -7AGTTGGTT C8782T T18996C C24370T T28144C T29029C -CC29835GTGAGATTAAAAGTTAATA G29841C GA29843AC T29847G AA29849GC GC29853TG TC29856AG G29861C G29868TCATTCTGC A29873G AA29875GT A29878G AA29880CT A29883T A29885T -29887TCGT AAA29890CGG AAA29897GCG -29904CGTTTA

EPI_ISL_449479 MT079846
 2020-01-22 2020-02-18
 China SARS-CoV-2/human/CHN/WHUHnCoV004/2020
 ATT1-CG -7GTTGGTT A12G AC14TA T17C CCC19GGG G23A TA25GT C28T C2536T C8782T T8886C T28144C -CC29835GTGAGATTAAAGTTAATA G29841C GA29843AC T29847G AA29849GC GC29853TG TC29856AG G29861C G29868TCATTCTGC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873G

EPI_ISL_449480 MT079847
 2020-01-22 2020-02-18
 China SARS-CoV-2/human/CHN/WHUHnCoV005/2020
 A1G AAA4- C8782T C10626T T28144C CCCC29835- A29839G T29842A -29847AAAG TAG29851CTA T29855A -29859ACTTGTGC G29861T AGAA29863TAGT GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_449481 MT079848
 2020-01-22 2020-02-18
 China SARS-CoV-2/human/CHN/WHUHnCoV006/2020
 ATTAAAGGTT1- A12G ACC14GTT -20TCGTTGAAA C8782T T28144C -CC29835GTGAGATTAAAGTTAATA G29841C GA29843AC T29847G AA29849GC GC29853TG TC29856AG G29861C ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_449482 MT079849
 2020-01-22 2020-02-18
 China SARS-CoV-2/human/CHN/WHUHnCoV007/2020
 A1G AAA4GGTT A12G AC14TA T17C CCC19GGG G23A TA25GT C28T C8782T G16325C T28144C

EPI_ISL_449483 MT079850
 2020-01-22 2020-02-18
 China SARS-CoV-2/human/CHN/WHUHnCoV008/2020
 A1GGA TAA3CGG -7AAGTTGGTT C2536T C8782T T8886C T28144C TAG29826GGT CCCC29835- A29839G T29842A -29847AAAG TAG29851CTA T29855A -29859ACTTGTGC G29861T AGAA29863TAGT GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_449484 MT079851
 2020-01-22 2020-02-18
 China SARS-CoV-2/human/CHN/WHUHnCoV011/2020
 C8782T T28144C -29904CCGAAAGCTTGTGTTACATTGTATGCTTTAGTGGCAGTACGTTTTTTGCCGAGGCTTCTTAGAAGCCTCAGCAGCAGATTTCTTAGTGACAGTTTGGCCTTGTTGTTGTTGGCCT

EPI_ISL_449485 MT079852
 2020-01-22 2020-02-18
 China SARS-CoV-2/human/CHN/WHUHnCoV012/2020
 -2AACCTGTAAAACAGGCAAACTGAG A1G AA4GG G7C T10G A12G ACCT14TTTC -20GTTGAAA T25G AC27CA AA30GG CAA33TCT -A38ATCTTC C8782T T28144C CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_449486 MT079853
 2020-01-22 2020-02-18
 China SARS-CoV-2/human/CHN/WHUHnCoV020/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCAT1- C2536T C8782T T8886C T28144C A29876G A29879G A29882GGCTGATGAAACTCAAGCCTTACCGC A29884G A29886G A29888C A29890G A29893G A29897C AA29899GC -29904CTGTGACTCTTCTTCCTGCTGCAGATTTGGATGATTTCTCCAAACAATTGCAACAATCCATG

EPI_ISL_449487 MT079854
 2020-01-22 2020-02-18
 China SARS-CoV-2/human/CHN/WHUHnCoV021/2020
 A1G AA4GG G7C T10G A12G ACCT14TTTC -20GTTGAAA TA25-G A31GGCTCTCC C17249T C17894T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_450444 MT039874
 2020-01-22 2020-02-09
 China SARS-CoV-2/human/CHN/IME-HZ01/2020
 ATTAAAGGTTTA1- AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_451323
 2020-01-22 2020-05-24
 China hCoV-19/China/SC-MY-057/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- C683T T13243C

EPI_ISL_455683 MT407649
 2020-01-22 2020-04-27
 China SARS-CoV-2/human/CHN/CN1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATC1- C8782T C15480T T28144C AAAAAAAAAAAAAAAAAAAAAA29882-

EPI_ISL_455684 MT407650
 2020-01-22 2020-04-27
 China SARS-CoV-2/human/CHN/CN2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATC1- C8782T C13170T C15480T T28144C CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_455685 MT407651
 2020-01-22 2020-04-27
 China SARS-CoV-2/human/CHN/CN5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATC1- G6337T C8782T C15480T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_529988
 2020-01-22 2020-09-10
 Spain hCoV-19/Spain/MD-H12-56/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5622T A9134C C9474T C14408T A20268G A23403G C26534T C29218T G29734C ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

MT547814
 2020-01-22 2020-06-01
 United States SARS-CoV-2/human/HKG/VM20001061/2020
 ATTAAAGGTTTATA1- C1663T C8782T C12919T C21636T G22661T G23607A C24034T C24566G T26729C TTTTAAAGTTTCCATTTGGAATCTTGA27264- G28077C T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_406031
 2020-01-23 2020-01-27
 Taiwan hCoV-19/Taiwan/2/2020
 ATT1- G16188T A25964G G26144T A29877T AAAAAAAAAAAAAAAAAAAAAA29882-

EPI_ISL_406034 MN994467
 2020-01-23 2020-01-27
 United States 2019-nCoV/USA-CA1/2020
 G1548A C8782T C24034T T26729C G28077C T28144C A28792T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_406538 NMDC60013016-01
 2020-01-23 2020-01-29
 China BetaCoV/Guangdong/20SF201/2020
 ATTAAAGGTTTATACCTTCCCAG1- AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_406596
 2020-01-23 2020-01-29
 France hCoV-19/France/IDF0372/2020
 ATTAAAGGTTT1- G22661T G26144T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_406597
 2020-01-23 2020-01-29
 France hCoV-19/France/IDF0373/2020
 ATTAAAGGTTTATACCTTC1- G22661T G26144T TGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29829-

EPI_ISL_406973
 2020-01-23 2020-02-03
 Singapore hCoV-19/Singapore/1/2020
 A25060G TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_408479
 2020-01-23 2020-02-09
 China hCoV-19/Chongqing/ZX01/2020
 AAAAAAAAAAAA29892-

EPI_ISL_410532
 2020-01-23 2020-02-17
 Japan hCoV-19/Japan/OS-20-07-1/2020
 ATT1- AAAAAAAAAAAAAAAAAAAAAA29882-

EPI_ISL_410720
 2020-01-23 2020-02-18
 France hCoV-19/France/IDF0372-isl/2020
 G22661T G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_411950
 2020-01-23 2020-02-22
 China hCoV-19/Jiangsu/JS01/2020
 C3768T C25919T C29732T AAAAAAAAAAAA29892-

EPI_ISL_413015
 2020-01-23 2020-03-02
 Canada hCoV-19/Canada/ON_VIDO-01/2020
 ATTAAAGGTTTA1- AAGTCATTT686- A5084G C26261T C28854T AA29902-

EPI_ISL_418508 MT253696
 2020-01-23 2020-03-27
 China SARS-CoV-2/human/CHN/HZ-162/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

EPI_ISL_418509 MT253697
 2020-01-23 2020-03-27
 China SARS-CoV-2/human/CHN/HZ-178/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

EPI_ISL_418510 MT253698
 2020-01-23 2020-03-27
 China SARS-CoV-2/human/CHN/HZ-185/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

EPI_ISL_421248
 2020-01-23 2020-04-07
 China hCoV-19/Nanchang/JX39/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C289T T2922C C8782T T28144C AAAAAAAAAAAA29892-

EPI_ISL_425177
 2020-01-23 2020-04-14
 Canada hCoV-19/Canada/ON_ON-VIDO-01-2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- A5084G C28854T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_431785
 2020-01-23 2020-04-29
 China hCoV-19/Fujian/3520022Y/2020
 ATTAAA1- A26- C1077T C8782T T28144C G28878A G29742A -29851T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_434563 MT114412
 2020-01-23 2020-02-24
 China SARS-CoV-2/human/HKG/HKU-902a/2020
 AT1- T28861C AAAAAAAAAAAA29892-

EPI_ISL_437612 MT447166
 2020-01-23 2020-05-01
 Thailand SARS-CoV-2/human/THA/SI203285-NT/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- A895G C2942T G4390T C8782T C9598T G20134T G24047A T28144C TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_437622 MT447156
 2020-01-23 2020-05-01
 Thailand SARS-CoV-2/human/THA/SI200383-NT/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- G26144T T27285C TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_450196
 2020-01-23 2020-05-20
 Thailand hCoV-19/Thailand/Bangkok_168/2020
 C2915A A14280G G15327T G17686T G25217T AAAAAAAAAAAA29892-

EPI_ISL_451390
 2020-01-23 2020-05-24
 China hCoV-19/China/SC-WCH4-288/2020
 A16824G C26753T T28144C

EPI_ISL_468726 MT622319
 2020-01-23 2020-06-16
 China SARS-CoV-2/human/CHN/Shanghai_CH-03/2020
 AT1- C8782T C18029T C18060T C25487T T28144C A29884G A29888G AAAAAAAAAAAA29892-

EPI_ISL_529989
 2020-01-23 2020-09-10
 Spain hCoV-19/Spain/MD-H12-57/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G16744A A20268G G21190A A23403G T26301G ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_407893
 2020-01-24 2020-02-06
 Australia hCoV-19/Australia/NSW01/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_408668 EPI_ISL_416427
 2020-01-24 2020-02-10
 Vietnam hCoV-19/Vietnam/VR03-38142/2020
 A26- C28T C8782T C24034T T26729C G28077C T28144C T29859C GAGAATGA29862- A29875G A29877C AAAAA29899-

EPI_ISL_411926
 2020-01-24 2020-02-21
 Taiwan hCoV-19/Taiwan/3/2020
 C8782T T28144C A29889G AAAAAAAAAAAA29892-

EPI_ISL_411952
 2020-01-24 2020-02-22
 China hCoV-19/Jiangsu/JS02/2020
 G3860A C7420T G13571T C21707T G26211T AAAAAAAAAAAA29892-

EPI_ISL_411953
 2020-01-24 2020-02-22
 China hCoV-19/Jiangsu/JS03/2020
 AAAAAAAAAAAA29892-

EPI_ISL_413485
 2020-01-24 2020-03-05
 China hCoV-19/Anhui/SZ005/2020
 ATT1- A4T C2189T T3086C A5094G C8782T G11083- C16049T G17122A T28144C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_414938
 2020-01-24 2020-03-16
 China hCoV-19/Shandong/LY005-2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- T3171C C8782T T28144C TAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAG29817- GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_416046
 2020-01-24 2020-03-20
 China hCoV-19/Hangzhou/ZJU-04/2020
 A1CCCCCCCTTTTCAAGCAGAAGACGGCATACGAGA TA3GG -G7TCTCGTGACTGGAGTTCAGACGTGTGCTCTTCCA T10C

EPI_ISL_416829
 2020-01-24 2020-03-23
 Malaysia hCoV-19/Malaysia/MKAK-CL-2020-5045/2020
 ATTAAAGGTTTA1- C398T C27131T G27147C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_416866
 2020-01-24 2020-03-23
 Malaysia hCoV-19/Malaysia/MKAK-CL-2020-5047/2020
 ATTAAAGGTT1- G27147C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416884
 2020-01-24 2020-03-23
 Malaysia hCoV-19/Malaysia/MKAK-CL-2020-5049/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGA1- -194ACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGA CTATACATGTCTCTGGGACCAATGGTA21762- G27147C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_417030
 2020-01-24 2020-03-24
 Australia hCoV-19/Australia/NSW04/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C2445T C8782T T20367C T28144C C29095T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_418511 MT253699
 2020-01-24 2020-03-27
 China SARS-CoV-2/human/CHN/HZ-477/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

EPI_ISL_422425 NMDC60013101-01
 2020-01-24 2020-04-10
 China hCoV-19/Zhejiang/HZ103/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A23403G C23575T TG29867- AAAAAAAAAAAAAAAAAAAAA29883G

EPI_ISL_424355 GWHACAX01000001 MT291831
 2020-01-24 2020-03-02
 China SARS-CoV-2/human/CHN/Beijing_IME-BJ01/2020
 ATTAA1- C8782T G11937A C16293T T28144C C29095T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_424355 GWHACAX01000001 MT291831
 2020-01-24 2020-03-02
 China SARS-CoV-2/human/CHN/Beijing_IME-BJ01/2020
 ATTAA1- C8782T G11937A C16293T T28144C C29095T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_428465 NMDC60013128-01
 2020-01-24 2020-04-21
 China hCoV-19/Guangdong/20SF616/2020
 G8179T G25630C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_430734
 2020-01-24 2020-04-27
 China hCoV-19/Beijing/BJ53/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C10604T A15647G A21137G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_430735
 2020-01-24 2020-04-27
 China hCoV-19/Beijing/BJ54/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C10604T A15647G A21137G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_434564 MT114413
 2020-01-24 2020-02-24
 China SARS-CoV-2/human/HKG/HKU-902b/2020
 T28861C AAAAAAAAAAAA29892-

EPI_ISL_434565 MT114414
 2020-01-24 2020-02-24
 China SARS-CoV-2/human/HKG/HKU-903a/2020
 G1397A G11083T T28688C G29742T AAAAAAAAAAAA29892-

EPI_ISL_447911
 2020-01-24 2020-05-19
 Thailand hCoV-19/Thailand/Nonthaburi_193/2020
 C2942T G4390T C8782T T28144C AAAAAAAAAAAA29892-

EPI_ISL_450408 MT365028
 2020-01-24 2020-04-17
 China SARS-CoV-2/human/HKG/HKU-905a/2020
 G1397A G11083T T28688C G29742T AAAAAAAAAAAA29892-

EPI_ISL_451345
 2020-01-24 2020-05-24
 China hCoV-19/China/SC-PHCC1-022/2020
 C241T C3037T A23403G

EPI_ISL_451360
 2020-01-24 2020-05-24
 China hCoV-19/China/SC-PHCC2-040/2020
 C8782T C21767T T28144C C29095T

EPI_ISL_451361
 2020-01-24 2020-05-24
 China hCoV-19/China/SC-PHCC2-041/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500-

EPI_ISL_451392
 2020-01-24 2020-05-24
 China hCoV-19/China/SC-WCH4-290/2020
 

EPI_ISL_495459
 2020-01-24 2020-07-23
 China hCoV-19/Lishui/LS003/2020
 ATTAAAGGTTT1- C3885A C12778T T13270C G29449T AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_529990
 2020-01-24 2020-09-10
 Spain hCoV-19/Spain/MD-H12-58/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A12130T C14408T A20268G A23403G C29546A ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_406844 MT007544
 2020-01-25 2020-01-31
 Australia SARS-CoV-2/human/AUS/VIC01/2020
 T19065C T22303G G26144T CGATCGAGTG29750-

EPI_ISL_407084 LC521925
 2020-01-25 2020-02-04
 Japan BetaCoV/Japan/AI/I-004/2020
 ATT1- GGAGACTCCGTGGAGGAGGTCTTA359- C1912T C18512T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_407193
 2020-01-25 2020-02-04
 South Korea hCoV-19/South Korea/KCDC03/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- T4402C G5062T C8782T T28144C TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_407214 MT020880
 2020-01-25 2020-02-04
 United States 2019-nCoV/USA-WA1-A12/2020
 C8782T C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_407215 MT020881
 2020-01-25 2020-02-04
 United States 2019-nCoV/USA-WA1-F6/2020
 C8782T C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_407987
 2020-01-25 2020-02-07
 Singapore hCoV-19/Singapore/2/2020
 A1- G27147C TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_408977
 2020-01-25 2020-02-11
 Australia hCoV-19/Australia/NSW03/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_410531
 2020-01-25 2020-02-17
 Japan hCoV-19/Japan/NA-20-05-1/2020
 ATT1- AAAAAAAAAAAAAAAAAAAAAA29882-

EPI_ISL_411915 MT192759
 2020-01-25 2020-03-13
 Taiwan SARS-CoV-2/human/TWN/CGMH-CGU-01/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- AAAAAAAAAAAAAA29890-

EPI_ISL_411915 MT192759
 2020-01-25 2020-03-13
 Taiwan SARS-CoV-2/human/TWN/CGMH-CGU-01/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- AAAAAAAAAAAAAA29890-

EPI_ISL_413014
 2020-01-25 2020-03-02
 Canada hCoV-19/Canada/ON_PHL2445/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- A5084G C28854T AAA29901-

EPI_ISL_413691 CNA0013890
 2020-01-25 2020-03-09
 China Weifang/WFCDC0001/2020
 ATTAAAGGT1- C8782T T28144C ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_414940
 2020-01-25 2020-03-16
 China hCoV-19/Shandong/LY007-2/2020
 ATTAAA1- T3171C C8782T T28144C TGTGATTTTAAT29840- G29853C T29855G TT29858CA GA29862TC A29865G T29867G A29869C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_415709
 2020-01-25 2020-03-19
 China hCoV-19/Hangzhou/ZJU-01/2020
 AT1CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTTTTCAAGCAGAAGACGGCATACGAGATCGAG A6T -8TGACTGGA T11C T13G -16GTGTGCT C21G GG23TC AAC26- G11083T G23607A G26144T

EPI_ISL_416044
 2020-01-25 2020-03-20
 China hCoV-19/Hangzhou/ZJU-03/2020
 AT1CCCCCCCCCCCCCCCCCCCCCCCCCCCTTTTCAAGCAGAAGACGGCATACGAGATAATGAGCGGTGAC AA4GG G8T T10CAGACGTGTGCTCTTCCGA A12C G16846T

EPI_ISL_416316
 2020-01-25 2020-03-20
 China hCoV-19/Shanghai/SH0002/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C8782T T28144C G28878A G29742A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416317
 2020-01-25 2020-03-20
 China hCoV-19/Shanghai/SH0003/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C37T C8782T T28144C G28878A G29742A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416411 MT450920
 2020-01-25 2020-03-20
 Australia SARS-CoV-2/human/AUS/VIC03/2020
 ATTA1- G26144T

EPI_ISL_417178
 2020-01-25 2020-03-24
 China hCoV-19/Hong Kong/HKPU6_2101/2020
 C745T C26198T

EPI_ISL_418327
 2020-01-25 2020-01-25
 Canada hCoV-19/Canada/ON_PHL4181/2020
 A1- A5084G C28854T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418512 MT253700
 2020-01-25 2020-03-27
 China SARS-CoV-2/human/CHN/HZ-481/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

EPI_ISL_418513 MT253703
 2020-01-25 2020-03-27
 China SARS-CoV-2/human/CHN/HZ-551/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

EPI_ISL_418514 MT253704
 2020-01-25 2020-03-27
 China SARS-CoV-2/human/CHN/HZ-576/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

EPI_ISL_418515 MT253707
 2020-01-25 2020-03-27
 China SARS-CoV-2/human/CHN/HZ-638/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

EPI_ISL_421242
 2020-01-25 2020-04-07
 China hCoV-19/Ganzhou/JX81/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C8782T T28144C AAAAAAAAAAAA29892-

EPI_ISL_421245
 2020-01-25 2020-04-07
 China hCoV-19/Nanchang/JX90/2020
 ATTAAAGGTTTATACCTTCCCAGG1- A8173T C8782T T16909A T20852A C21997A T25724C T28144C AAAAAAAAAAAA29892-

EPI_ISL_421249
 2020-01-25 2020-04-07
 China hCoV-19/Xinyu/JX122/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C8782T T28144C AAAAAAAAAAAA29892-

EPI_ISL_424356 GWHACAY01000001 MT291832
 2020-01-25 2020-03-02
 China SARS-CoV-2/human/CHN/Beijing_IME-BJ02/2020
 ATTAAAGG1- T4402C G5062T C8782T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_424356 GWHACAY01000001 MT291832
 2020-01-25 2020-03-02
 China SARS-CoV-2/human/CHN/Beijing_IME-BJ02/2020
 ATTAAAGG1- T4402C G5062T C8782T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428464 NMDC60013127-01
 2020-01-25 2020-04-21
 China hCoV-19/Guangdong/20SF602/2020
 G26144T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_429852
 2020-01-25 2020-04-24
 China hCoV-19/Lishui/LS111/2020
 ATTAAAGGTTT1- C3885A C12778T T13270C G29449T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871TT

EPI_ISL_437620 MT447158
 2020-01-25 2020-05-01
 Thailand SARS-CoV-2/human/THA/SI200468-NT/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C2942T G4390T C8782T T28144C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_437621 MT447157
 2020-01-25 2020-05-01
 Thailand SARS-CoV-2/human/THA/SI200433-NT/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_447912
 2020-01-25 2020-05-19
 Thailand hCoV-19/Thailand/Bangkok_237/2020
 C2942T G4390T C8782T T28144C AAAAAAAAAAAA29892-

EPI_ISL_447914
 2020-01-25 2020-05-19
 Thailand hCoV-19/Thailand/Phuket_247/2020
 AAAAAAAAAAAA29892-

EPI_ISL_450489 GWHACDJ01000001 MT259231
 2020-01-25 2020-03-26
 China SARS-CoV-2/Wuhan_YB012504/human/2020/CHN
 ATTAAAGGTTTATA1- C20692T G29868C AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_450504 GWHACDI01000001 MT259230
 2020-01-25 2020-03-26
 China SARS-CoV-2/Wuhan_YB012506/human/2020/CHN
 ATTAAAGGTTTATA1- C17373T G29868C AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_451382
 2020-01-25 2020-05-24
 China hCoV-19/China/SC-WCH-315/2020
 ATTAAAGGTTTATACCTTCCCAG1- C12896T C17373T C23191T

EPI_ISL_493149 GWHALPE01000001
 2020-01-25 2020-07-21
 China SARS-CoV-2/Wuhan_A137/human/2020/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C5869T ACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29695-

EPI_ISL_493150 GWHALPF01000001
 2020-01-25 2020-07-21
 China SARS-CoV-2/Wuhan_A142/human/2020/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- A1079C C5869T C18109A ACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29695-

EPI_ISL_493151 GWHALPG01000001
 2020-01-25 2020-07-21
 China SARS-CoV-2/Wuhan_A145/human/2020/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C5869T ACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29695-

EPI_ISL_493152 GWHALPH01000001
 2020-01-25 2020-07-21
 China SARS-CoV-2/Wuhan_A148/human/2020/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- A1079C C5869T C24130A ACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29695-

EPI_ISL_493153 GWHALPI01000001
 2020-01-25 2020-07-21
 China SARS-CoV-2/Wuhan_A152/human/2020/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- A1079C C5869T ACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29695-

EPI_ISL_493154 GWHALPJ01000001
 2020-01-25 2020-07-21
 China SARS-CoV-2/Wuhan_A153/human/2020/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- ACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29695-

EPI_ISL_493155 GWHALPK01000001
 2020-01-25 2020-07-21
 China SARS-CoV-2/Wuhan_A160/human/2020/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- A1079C C24130A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_493156 GWHALPL01000001
 2020-01-25 2020-07-21
 China SARS-CoV-2/Wuhan_A163/human/2020/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- A1079C C24130A ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_493157 GWHALPM01000001
 2020-01-25 2020-07-21
 China SARS-CoV-2/Wuhan_A164/human/2020/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_493158 GWHALPN01000001
 2020-01-25 2020-07-21
 China SARS-CoV-2/Wuhan_A167/human/2020/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C28115T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_493159 GWHALPO01000001
 2020-01-25 2020-07-21
 China SARS-CoV-2/Wuhan_A168/human/2020/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- A1079C T6556C A13625G ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_493161 GWHALPP01000001
 2020-01-25 2020-07-21
 China SARS-CoV-2/Wuhan_A170/human/2020/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C2462T G18380A ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_493163 GWHALPQ01000001
 2020-01-25 2020-07-21
 China SARS-CoV-2/Wuhan_A174/human/2020/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C19386T G22081A ACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29695-

EPI_ISL_493164 GWHALPR01000001
 2020-01-25 2020-07-21
 China SARS-CoV-2/Wuhan_A182/human/2020/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C28253T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_493165 GWHALPS01000001
 2020-01-25 2020-07-21
 China SARS-CoV-2/Wuhan_A191/human/2020/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- G2888T C8782T G18816T A26565C T28144C ACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29695-

EPI_ISL_493166 GWHALPT01000001
 2020-01-25 2020-07-21
 China SARS-CoV-2/Wuhan_A192/human/2020/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- G7615A A13175G ACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29695-

EPI_ISL_497860
 2020-01-25 2020-07-25
 China hCoV-19/Hong Kong/HKU-200723-093/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C745T C26198T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509505
 2020-01-25 2020-08-05
 Australia hCoV-19/Australia/NSW2153/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_529991
 2020-01-25 2020-09-10
 Spain hCoV-19/Spain/MD-H12-59/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G C25418A C26873T G27147T C28854T ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_539334
 2020-01-25 2020-09-16
 China hCoV-19/Hunan/HN-CIDC-P5/2020
 T25525A

GWHAORD01000001
 2020-01-25 2020-09-11
 China SARS-CoV-2/human/CHN/Beijing-P2.1/2020
 

MW011763
 2020-01-25 2020-09-16
 China SARS-CoV-2/human/CHN/P5-SARS-CoV-2/2020
 T25525A

CNA0013697
 2020-01-26 2020-03-09
 China Guangzhou/GZ8H0001/2020
 ATTAAAGGTTT1- C8782T C12534T C13072T T28144C ATGA29866GCTG AA29871CT A29874T AAA29876TGG A29881G AAAAA29883GCCCT AAAAA29890TGTGT AA29899TT A29903TTTTAGTAGTGCT

CNA0013698
 2020-01-26 2020-03-09
 China Guangzhou/GZ8H0002/2020
 ATTAAAGGTTTATA1- C16A C8782T C12534T C13072T T28144C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

CNA0013702
 2020-01-26 2020-03-09
 China Guangzhou/GZ8H0007/2020
 ATTAAAGGTTTAT1- C8782T C12534T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871G

CNA0013708
 2020-01-26 2020-03-09
 China Guangzhou/GZ8H0016/2020
 ATTAAAGGTTTAT1- C15324T C17550T C29303T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875C

EPI_ISL_413518 MT135041
 2020-01-26 2020-03-02
 China SARS-CoV-2/human/CHN/105/2020
 T4402C G5062T C8782T T28144C

EPI_ISL_413692 CNA0013889
 2020-01-26 2020-03-09
 China Weifang/WFCDC0002/2020
 ATTAAAGGTTT1- T22020C G24680T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_416042
 2020-01-26 2020-03-20
 China hCoV-19/Hangzhou/ZJU-02/2020
 -T2AGAGTGCTTAG GG7AT -10TTAATCAGCACGAAGTTCTACTTGCACCA C8782T T28144C

EPI_ISL_416473
 2020-01-26 2020-03-22
 China hCoV-19/Hangzhou/ZJU-08/2020
 A1CCCCCCCCCCCCCCCCCCCCCCCCCCCCTTTTCAAGCAGAAGACGGCATACGAGATGCGCA AA5GT -8ACTGGA T11C T13G -16GTGTGCT C21G GG23TC AAC26- C8782T C18060T T28144C

EPI_ISL_421239
 2020-01-26 2020-04-07
 China hCoV-19/Shangrao/JX105/2020
 ATTAAAGGTTTATACCTTCCCAGG1- G1265A C8782T C10741T T28144C AAAAAAAAAAAA29892-

EPI_ISL_421253
 2020-01-26 2020-04-07
 China hCoV-19/Jian/JX129/2020
 ATTAAAGGTTTATACCTTCCCAGG1- T21111G G24680T C25539T AAAAAAAAAAAA29892-

EPI_ISL_421260
 2020-01-26 2020-04-07
 China hCoV-19/Xinyu/JX124/2020
 ATTAAAGGTTTATACCTTCCCAGG1- G1397A G11083T G24812T T28688C G29742T AAAAAAAAAAAA29892-

EPI_ISL_428466 NMDC60013129-01
 2020-01-26 2020-04-21
 China hCoV-19/Guangdong/20SF629/2020
 G4184A C11074T G11083T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_428467 NMDC60013130-01
 2020-01-26 2020-04-21
 China hCoV-19/Guangdong/20SF630/2020
 C4890T C17373T G28041T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_428468 NMDC60013131-01
 2020-01-26 2020-04-21
 China hCoV-19/Guangdong/20SF632/2020
 C4890T C17373T G28041T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_437619 MT447159
 2020-01-26 2020-05-01
 Thailand SARS-CoV-2/human/THA/SI200478-NST/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C9996T G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_447915
 2020-01-26 2020-05-19
 Thailand hCoV-19/Thailand/Bangkok_269/2020
 C9996T G26144T AAAAAAAAAAAA29892-

EPI_ISL_450501 GWHACDF01000001 MT259227
 2020-01-26 2020-03-26
 China SARS-CoV-2/Wuhan_YB012611/human/2020/CHN
 ATTAAAGGTTTATA1- T1623C T3299C C20692T C25156T AT29844GG TT29847GG G29868C AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_450502 GWHACDG01000001 MT259228
 2020-01-26 2020-03-26
 China SARS-CoV-2/Wuhan_YB012605/human/2020/CHN
 ATTAAAGGTTTATA1- C20692T TT29845GA G29861A G29868C AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_450503 GWHACDH01000001 MT259229
 2020-01-26 2020-03-26
 China SARS-CoV-2/Wuhan_YB012602/human/2020/CHN
 ATTAAAGGTTTATA1- C20692T G29868C AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_451312
 2020-01-26 2020-05-24
 China hCoV-19/China/SC-GA-061/2020
 C683T A3368- C18512T G18525- C25317T

EPI_ISL_451313
 2020-01-26 2020-05-24
 China hCoV-19/China/SC-GA-062/2020
 T23287G C26478T

EPI_ISL_451365
 2020-01-26 2020-05-24
 China hCoV-19/China/SC-PHCC2-045/2020
 C8782T A22206G C25317T T28144C

EPI_ISL_455680 GWHAMMJ01000001 MT534630
 2020-01-26 2020-05-29
 China SARS-CoV-2/human/CHN/Changzhou_JS27/2020
 G11083T TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_455686 MT407652
 2020-01-26 2020-04-27
 China SARS-CoV-2/human/CHN/CN3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATC1- A19722G C23525T AAAAAAAAAAAAAAAAAAAA29884-

EPI_ISL_455687 MT407653
 2020-01-26 2020-04-27
 China SARS-CoV-2/human/CHN/CN4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATC1- C2485T T3380C C8782T T9370G T13954G C18060T T28144C AAAAAAAAAAAAAAAAAAAA29884-

EPI_ISL_493167 GWHALRI01000001
 2020-01-26 2020-07-21
 China SARS-CoV-2/Wuhan_C5/human/2020/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- A23116T ACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29695-

EPI_ISL_493168 GWHALRJ01000001
 2020-01-26 2020-07-21
 China SARS-CoV-2/Wuhan_C7/human/2020/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C8782T T28144C ACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29695-

EPI_ISL_493169 GWHALRK01000001
 2020-01-26 2020-07-21
 China SARS-CoV-2/Wuhan_C10/human/2020/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- T4402C G5062T C8782T C22747T T28144C ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_493170 GWHALRL01000001
 2020-01-26 2020-07-21
 China SARS-CoV-2/Wuhan_C12/human/2020/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_493171 GWHALRM01000001
 2020-01-26 2020-07-21
 China SARS-CoV-2/Wuhan_C13/human/2020/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C8782T C18060T T28144C ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_493172 GWHALRN01000001
 2020-01-26 2020-07-21
 China SARS-CoV-2/Wuhan_C14/human/2020/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- A1620C C2623T A25383G C28253T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_493173 GWHALRO01000001
 2020-01-26 2020-07-21
 China SARS-CoV-2/Wuhan_C26/human/2020/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- T5905C C8782T T28144C ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_493174 GWHALRP01000001
 2020-01-26 2020-07-21
 China SARS-CoV-2/Wuhan_C31/human/2020/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- G8432T C8782T G18712T T28144C C29095T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_493175 GWHALRQ01000001
 2020-01-26 2020-07-21
 China SARS-CoV-2/Wuhan_C43/human/2020/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C7482T C8782T C12513T C27213T T28144C ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_493176 GWHALRR01000001
 2020-01-26 2020-07-21
 China SARS-CoV-2/Wuhan_C45/human/2020/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- G15907A ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_493177 GWHALRS01000001
 2020-01-26 2020-07-21
 China SARS-CoV-2/Wuhan_C47/human/2020/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_493178 GWHALRT01000001
 2020-01-26 2020-07-21
 China SARS-CoV-2/Wuhan_C77/human/2020/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C8782T T13402G T28144C ACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29695-

EPI_ISL_493179 GWHALRU01000001
 2020-01-26 2020-07-21
 China SARS-CoV-2/Wuhan_C93/human/2020/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C8782T T13402G ACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29695-

EPI_ISL_493180 GWHALRV01000001
 2020-01-26 2020-07-21
 China SARS-CoV-2/Wuhan_C94/human/2020/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C8782T C13730T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_493181 GWHALRW01000001
 2020-01-26 2020-07-21
 China SARS-CoV-2/Wuhan_C98/human/2020/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C8782T C17410T T28144C ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_493182 GWHALRX01000001
 2020-01-26 2020-07-21
 China SARS-CoV-2/Wuhan_C100/human/2020/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C8782T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_493183 GWHALRY01000001
 2020-01-26 2020-07-21
 China SARS-CoV-2/Wuhan_C101/human/2020/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C8782T T28144C ACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29695-

EPI_ISL_493184 GWHALRZ01000001
 2020-01-26 2020-07-21
 China SARS-CoV-2/Wuhan_C102/human/2020/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C8782T C17410T T28144C ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_493185 GWHALSA01000001
 2020-01-26 2020-07-21
 China SARS-CoV-2/Wuhan_C103/human/2020/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C8782T C17410T T28144C ACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29695-

EPI_ISL_493186 GWHALSB01000001
 2020-01-26 2020-07-21
 China SARS-CoV-2/Wuhan_C106/human/2020/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C8782T C16349T C17410T T28144C ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_493188 GWHALSC01000001
 2020-01-26 2020-07-21
 China SARS-CoV-2/Wuhan_C109/human/2020/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C8782T C17410T T28144C ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_493189 GWHALSD01000001
 2020-01-26 2020-07-21
 China SARS-CoV-2/Wuhan_C111/human/2020/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C8782T C17410T T28144C ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_529992
 2020-01-26 2020-09-10
 Spain hCoV-19/Spain/MD-H12-61/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G3473A C8782T C19983T C26088T T28144C ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_539337
 2020-01-26 2020-09-16
 China hCoV-19/Hunan/HN-CIDC-P8/2020
 T25525A

MW011766
 2020-01-26 2020-09-16
 China SARS-CoV-2/human/CHN/P8-SARS-CoV-2/2020
 T25525A

EPI_ISL_410044 MT044258
 2020-01-27 2020-02-11
 United States 2019-nCoV/USA-CA6/2020
 TGGTCATGTTATGGT508- AAGTCATTT686- AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_410713
 2020-01-27 2020-02-18
 Singapore hCoV-19/Singapore/7/2020
 G26144T C28849T AAAAAAAAAAAA29892-

EPI_ISL_411902
 2020-01-27 2020-02-21
 Cambodia hCoV-19/Cambodia/0012/2020
 A1- G25654T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_413522 MT012098
 2020-01-27 2020-02-01
 India SARS-CoV-2/human/IND/29/2020
 ATTAAAGGTTTAT1- T2277C C6695T C14657T C17373T TTA21991- G22785T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_413693 CNA0013888
 2020-01-27 2020-03-09
 China Weifang/WFCDC0003/2020
 ATTAAAGGTTTAT1- C2334T C26198T GAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29864-

EPI_ISL_413694 CNA0013887
 2020-01-27 2020-03-09
 China Weifang/WFCDC0004/2020
 ATTAAAGGTTT1- T22020C G24680T AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_418996
 2020-01-27 2020-04-01
 Singapore hCoV-19/Singapore/15/2020
 C8782T ACTTGAACTGCAAGATCATAATGAAACTTGTCACGCCTAAACGAACATGAAATTTCTTGTTTTCTTAGGAATCATCACAACTGTAGCTGCATTTCACCAAGAATGTAGTTTACAGTCATGTACTCAACATCAACCATATGTAGTTGATGACCCGTGTCCTATTCACTTCTATTCTAAATGGTATATTAGAGTAGGAGCTAGAAAATCAGCACCTTTAATTGAATTGTGCGTGGATGAGGCTGGTTCTAAATCACCCATTCAGTACATCGATATCGGTAATTATACAGTTTCCTGTTTACCTTTTACAATTAATTGCCAGGAACCTAAATTGGGTAGTCTTGTAGTGCGTTGTTCGTTCTATGAAGACTTTTTAGAGTATCAT27848- AAAAAAAAAAAA29892-

EPI_ISL_421247
 2020-01-27 2020-04-07
 China hCoV-19/Nanchang/JX149/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C8782T T28144C AAAAAAAAAAAA29892-

EPI_ISL_421256
 2020-01-27 2020-04-07
 China hCoV-19/Jian/JX169/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C11575A G26144T G26640T AAAAAAAAAAAA29892-

EPI_ISL_421259
 2020-01-27 2020-04-07
 China hCoV-19/Pingxiang/JX151/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C22323T AAAAAAAAAAAA29892-

EPI_ISL_424359 GWHACBB01000001 MT291835
 2020-01-27 2020-04-19
 China SARS-CoV-2/human/CHN/Beijing_IME-BJ05/2020
 ATTAA1- T7082C C15866G AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_424359 GWHACBB01000001 MT291835
 2020-01-27 2020-04-19
 China SARS-CoV-2/human/CHN/Beijing_IME-BJ05/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C186T C23520T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_428469 NMDC60013132-01
 2020-01-27 2020-04-21
 China hCoV-19/Guangdong/20SF665/2020
 TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_428470 NMDC60013133-01
 2020-01-27 2020-04-21
 China hCoV-19/Guangdong/20SF684/2020
 C8782T T28144C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_428471 NMDC60013134-01
 2020-01-27 2020-04-21
 China hCoV-19/Guangdong/20SF685/2020
 C8782T T28144C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_428473 NMDC60013136-01
 2020-01-27 2020-04-21
 China hCoV-19/Guangdong/20SF758/2020
 C815T C12213T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_429102 CNA0013954
 2020-01-27 2020-04-23
 China Guangzhou/GZMU0059/2020
 C21707T AAAAAAAAAAAA29892-

EPI_ISL_434566 MT114415
 2020-01-27 2020-02-24
 China SARS-CoV-2/human/HKG/HKU-903b/2020
 G1397A G11083T T28688C G29742T AAAAAAAAAAAA29892-

EPI_ISL_434567 MT114416
 2020-01-27 2020-02-24
 China SARS-CoV-2/human/HKG/HKU-907a/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C6501T C8782T T28144C AAAAAAAAAAAA29892-

EPI_ISL_434569 MT114418
 2020-01-27 2020-02-24
 China SARS-CoV-2/human/HKG/HKU-908a/2020
 C8092T G11083T AAAAAAAAAAAA29892-

EPI_ISL_451319
 2020-01-27 2020-05-24
 China hCoV-19/China/SC-MY-053/2020
 C635T T28144C C28253T

EPI_ISL_451320
 2020-01-27 2020-05-24
 China hCoV-19/China/SC-MY-054/2020
 T28144C

EPI_ISL_451339
 2020-01-27 2020-05-24
 China hCoV-19/China/SC-NJ-090/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500-

EPI_ISL_451351
 2020-01-27 2020-05-24
 China hCoV-19/China/SC-PHCC1-030/2020
 C9565A G10178- G17590T T28144C

EPI_ISL_451353
 2020-01-27 2020-05-24
 China hCoV-19/China/SC-PHCC1-032/2020
 T28144C

EPI_ISL_451359
 2020-01-27 2020-05-24
 China hCoV-19/China/SC-PHCC2-039/2020
 G26458A

EPI_ISL_451381
 2020-01-27 2020-05-24
 China hCoV-19/China/SC-WCH-311/2020
 AT1- G26144T

EPI_ISL_451384
 2020-01-27 2020-05-24
 China hCoV-19/China/SC-WCH3-255/2020
 C8782T T28144C

EPI_ISL_451387
 2020-01-27 2020-05-24
 China hCoV-19/China/SC-WCH4-285/2020
 

EPI_ISL_462283
 2020-01-27 2020-06-08
 Singapore hCoV-19/Singapore/165/2020
 T4693Y T9642C A11451G C25214T C26873Y AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_518548 MT971484
 2020-01-27 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5749/2020
 ATTAAAGGTTTA1- C66T C241T A1163T C3037T T7540C C14408T T16491C G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_529993
 2020-01-27 2020-09-10
 Spain hCoV-19/Spain/MD-H12-62/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C14408T G22468T A23403G A24129G GGG28881AAC T29685G ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_539336
 2020-01-27 2020-09-16
 China hCoV-19/Hunan/HN-CIDC-P7/2020
 T25525A

MT123292
 2020-01-27 2020-02-28
 China SARS-CoV-2/human/CHN/IQTC04/2020
 A1C C8782T C12534T C13072T T28144C A29873T AAA29876GGT AAA29880GCG -29886TTCCTTGTC AA29888CT A29892C AA29894CG AAAAA29899GGCGC

MW011765
 2020-01-27 2020-09-16
 China SARS-CoV-2/human/CHN/P7-SARS-CoV-2/2020
 T25525A

CNA0013703
 2020-01-28 2020-03-09
 China Guangzhou/GZ8H0008/2020
 ATTAAAGGTTTATA1- G6819T C13072T G29527A GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_406862
 2020-01-28 2020-01-31
 Germany hCoV-19/Germany/BavPat1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_407894 MT050414
 2020-01-28 2020-02-06
 Australia SARS-CoV-2/human/AUS/QLD01/2020_FSS915
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C8782T T28144C G28878A G29742A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_410045 MT044257
 2020-01-28 2020-02-11
 United States 2019-nCoV/USA-IL2/2020
 T490A C3177T C8782T C24034T T26729C G28077C T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_411219
 2020-01-28 2020-02-19
 France hCoV-19/France/IDF0386-islP1/2020
 G22661T G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_411220
 2020-01-28 2020-02-19
 France hCoV-19/France/IDF0386-islP3/2020
 G22661T G26144T AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_411927
 2020-01-28 2020-02-21
 Taiwan hCoV-19/Taiwan/4/2020
 A1- AAAAAAAAAAAA29892-

EPI_ISL_413519 MT135042
 2020-01-28 2020-03-02
 China SARS-CoV-2/human/CHN/231/2020
 T4402C G5062T C8782T T28144C

EPI_ISL_413520 MT135043
 2020-01-28 2020-03-02
 China SARS-CoV-2/human/CHN/233/2020
 T4402C G5062T C8782T T28144C A29301T

EPI_ISL_413521 MT135044
 2020-01-28 2020-03-02
 China SARS-CoV-2/human/CHN/235/2020
 T4402C G5062T C8782T T28144C

EPI_ISL_416318
 2020-01-28 2020-03-20
 China hCoV-19/Shanghai/SH0004/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C23347T T28144C C29095T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416319
 2020-01-28 2020-03-20
 China hCoV-19/Shanghai/SH0005/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T28144C C29095T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416320
 2020-01-28 2020-03-20
 China hCoV-19/Shanghai/SH0007/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- A22695G C24370T T27554C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416321
 2020-01-28 2020-03-20
 China hCoV-19/Shanghai/SH0008/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C203T C14889T C21707T C26533T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416474
 2020-01-28 2020-03-22
 China hCoV-19/Hangzhou/ZJU-09/2020
 A1CCCCCCCTTTTCAAGCAGAAGACGGCATACGAGA T3C A5T -G7GCCGGTGACTGGAGTTCAGACGTGTGCTCTTCCA T10C T22303G

EPI_ISL_424357 GWHACAZ01000001 MT291833
 2020-01-28 2020-03-02
 China SARS-CoV-2/human/CHN/Beijing_IME-BJ03/2020
 ATTAAAGGTTTATACCTTCC1- T4402C G5062T C8782T T28144C TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_424357 GWHACAZ01000001 MT291833
 2020-01-28 2020-03-02
 China SARS-CoV-2/human/CHN/Beijing_IME-BJ03/2020
 ATTAAAGGTTTATACCTTCC1- T4402C G5062T C8782T T28144C TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_424358 GWHACBA01000001 MT291834
 2020-01-28 2020-03-02
 China SARS-CoV-2/human/CHN/Beijing_IME-BJ04/2020
 ATTAAAGG1- G2875A T4402C G5062T C8782T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_424358 GWHACBA01000001 MT291834
 2020-01-28 2020-03-02
 China SARS-CoV-2/human/CHN/Beijing_IME-BJ04/2020
 ATTAAAGG1- G2875A T4402C G5062T C8782T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_428472 NMDC60013135-01
 2020-01-28 2020-04-21
 China hCoV-19/Guangdong/20SF753/2020
 G16188T G26144T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_428474 NMDC60013137-01
 2020-01-28 2020-04-21
 China hCoV-19/Guangdong/20SF808/2020
 C12741T C27150T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_428475 NMDC60013138-01
 2020-01-28 2020-04-21
 China hCoV-19/Guangdong/20SF812/2020
 C2749T C15324T C16658T C25810G G28827A C29303T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_428476 NMDC60013139-01
 2020-01-28 2020-04-21
 China hCoV-19/Guangdong/20SF813/2020
 C8782T T28144C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_429853
 2020-01-28 2020-04-24
 China hCoV-19/Lishui/LS556/2020
 ATTAAAGGTTT1- C3885A C12778T T13270C G29449T AA29893CT AAAAAA29898C

EPI_ISL_430443
 2020-01-28 2020-04-27
 Malaysia hCoV-19/Malaysia/IMR_WC085/2020
 A1G TA3AC T3163A T16272C G27147C G29862T GAA29864CCT GA29868CC AAA29872GGT A29877C AA29881CC AAAAAAAAAAAAAAAAAAA29885C

EPI_ISL_450198 MT270101
 2020-01-28 2020-03-28
 Germany SARS-CoV-2/human/DEU/BavPat1-ChVir929/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_450200 MT270103
 2020-01-28 2020-03-28
 Germany SARS-CoV-2/human/DEU/BavPat3-ChVir1020/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_451376
 2020-01-28 2020-05-24
 China hCoV-19/China/SC-WCH1-005/2020
 C8529T G20635A C22482T G26144T

EPI_ISL_451378
 2020-01-28 2020-05-24
 China hCoV-19/China/SC-WCH2-017/2020
 C26370T C29640T G29742A

EPI_ISL_529994
 2020-01-28 2020-09-10
 Spain hCoV-19/Spain/MD-H12-63/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C14408T G22468T A23403G A24129G GGG28881AAC T29685G ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_539335
 2020-01-28 2020-09-16
 China hCoV-19/Hunan/HN-CIDC-P6/2020
 A8891G T13781G T25525A

MW011764
 2020-01-28 2020-09-16
 China SARS-CoV-2/human/CHN/P6-SARS-CoV-2/2020
 A8891G T13781G T25525A

NMDC60013275
 2020-01-28 2020-06-01
 China hCoV-19/Guangzhou/ID104/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G26144T C29870A

NMDC60013276
 2020-01-28 2020-06-01
 China hCoV-19/Guangzhou/ID097/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C10604T A11822G C29303T G29868A

CNA0013699
 2020-01-29 2020-03-09
 China Guangzhou/GZ8H0003/2020
 -2AACAAACCCAAGGAAATTGTCCGGACCAGGAACTAATCAGACAACGAACTGA A5C G7AACATT TTTA9GCCG C8782T C12534T C13072T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

CNA0013704
 2020-01-29 2020-03-09
 China Guangzhou/GZ8H0010/2020
 ATTAAAGGTTT1- G6819T T6996C C17373T G29527A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872C

CNA0013705
 2020-01-29 2020-03-09
 China Guangzhou/GZ8H0011/2020
 ATTAAAGGTTT1- G6819T C17373T G29527A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_407071
 2020-01-29 2020-02-03
 United Kingdom hCoV-19/England/01/2020
 C8782T T18488C T22586Y T23605G T28144C ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_407073
 2020-01-29 2020-02-03
 United Kingdom hCoV-19/England/02/2020
 C8782T T18488C T23605G T28144C A29596G ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_408008 MT027062
 2020-01-29 2020-02-06
 United States 2019-nCoV/USA-CA3/2020
 G614A A5084G C28854T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_408009 MT027063
 2020-01-29 2020-02-06
 United States 2019-nCoV/USA-CA4/2020
 G614A A5084G C28854T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_408010 MT027064
 2020-01-29 2020-02-06
 United States 2019-nCoV/USA-CA5/2020
 C2091T C21707T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_408430
 2020-01-29 2020-02-08
 France hCoV-19/France/IDF0515/2020
 A1- C1190T C9438T G11083T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_408431
 2020-01-29 2020-02-08
 France hCoV-19/France/IDF0626/2020
 ATTAAAGGTTT1- C25153T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_408665 LC522973
 2020-01-29 2020-02-10
 Japan 2019-nCoV/Japan/TY/WK-012/2020
 ATT1- C2662T C3792T C8782T T28144C C29095T AAAAAAAAAAAAAAAAAAAAAA29882-

EPI_ISL_408669 LC522972
 2020-01-29 2020-02-10
 Japan 2019-nCoV/Japan/KY/V-029/2020
 ATT1- G11557T C15324T C25810G C29303T AAAAAAAAAAAAAAAAAAAAAA29882-

EPI_ISL_409067 MT039888
 2020-01-29 2020-02-11
 United States 2019-nCoV/USA-MA1/2020
 G3518T G5480R A17423G C24034T C28854T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_410545
 2020-01-29 2020-02-17
 Italy hCoV-19/Italy/INMI1-isl/2020
 A2269T G26144T GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_410984
 2020-01-29 2020-02-18
 France hCoV-19/France/IDF0515-isl/2020
 C1190T C9438T G11083T

EPI_ISL_412967 MT123291
 2020-01-29 2020-02-28
 China SARS-CoV-2/human/CHN/IQTC02/2020
 A1CCCTGAATTAGACTCA -4CAAGG G6819T C17373T C19610T G29527A A29886CCTTGT A29888G A29890G A29892G AA29894GT AA29902TT

EPI_ISL_412974
 2020-01-29 2020-03-01
 Italy hCoV-19/Italy/SPL1/2020
 G11083T G26144T

EPI_ISL_416322
 2020-01-29 2020-03-20
 China hCoV-19/Shanghai/SH0009/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C8782T C17372T T28144C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416323
 2020-01-29 2020-03-20
 China hCoV-19/Shanghai/SH0010/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C3176T C8782T C21855T T28144C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416324
 2020-01-29 2020-03-20
 China hCoV-19/Shanghai/SH0011/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C12896T C17373T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_418993
 2020-01-29 2020-04-01
 Singapore hCoV-19/Singapore/20/2020
 C865T C6573Y C8782T C13694T C18060T T28144C AAAAAAAAAAAAA29891-

EPI_ISL_418994
 2020-01-29 2020-04-01
 Singapore hCoV-19/Singapore/3Clin/2020
 G261K G9953R T9959Y G11083T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_421238
 2020-01-29 2020-04-07
 China hCoV-19/Nanchang/JX174/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C8782T G13183A T28144C C29095T AAAAAAAAAAAA29892-

EPI_ISL_421261
 2020-01-29 2020-04-07
 China hCoV-19/Nanchang/JX176/2020
 ATTAAAGGTTTATACCTTCCCAGG1- G1397A G24812T A28305C T28688C G29742T AAAAAAAAAAAA29892-

EPI_ISL_421262
 2020-01-29 2020-04-07
 China hCoV-19/Nanchang/JX155/2020
 ATTAAAGGTTTATACCTTCCCAGG1- G1397A G11083T G24812T A28305C T28688C G29742T AAAAAAAAAAAA29892-

EPI_ISL_424360 GWHACBD01000001 MT291836
 2020-01-29 2020-03-02
 China SARS-CoV-2/human/CHN/Beijing_IME-BJ07/2020
 ATTAAAGG1- C8782T C23271T C24023T G26526T G27225T T28144C C28887T ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_424360 GWHACBD01000001 MT291836
 2020-01-29 2020-03-02
 China SARS-CoV-2/human/CHN/Beijing_IME-BJ07/2020
 ATTAAAGG1- C8782T C23271T C24023T G26526T G27225T T28144C C28887T ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_428441 NMDC60013104-01
 2020-01-29 2020-04-21
 China hCoV-19/Guangdong/20SF1107/2020
 A3842G C8782T C25521T G27632A T28144C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_428478 NMDC60013141-01
 2020-01-29 2020-04-21
 China hCoV-19/Guangdong/20SF840/2020
 C4890T C17373T G28041T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_429096 CNA0013948
 2020-01-29 2020-04-23
 China Guangzhou/GZMU0051/2020
 C21707T AAAAAAAAAAAA29892-

EPI_ISL_429097 CNA0013949
 2020-01-29 2020-04-23
 China Guangzhou/GZMU0052/2020
 C21707T AAAAAAAAAAAA29892-

EPI_ISL_429098 CNA0013950
 2020-01-29 2020-04-23
 China Guangzhou/GZMU0054/2020
 C21707T AAAAAAAAAAAA29892-

EPI_ISL_429105 CNA0013957
 2020-01-29 2020-04-23
 China Guangzhou/GZMU0055/2020
 C21707T A29866G G29868A C29870A AA29872TT AAAA29876TTTT AA29881GT AAAA29884GCGC

EPI_ISL_430722
 2020-01-29 2020-04-27
 China hCoV-19/Beijing/BJ287/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C23271T C24023T G26526T G27225T T28144C C28887T TGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29840-

EPI_ISL_430725
 2020-01-29 2020-04-27
 China hCoV-19/Beijing/BJ288/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C23271T C24023T G26526T G27225T T28144C C28887T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_430736
 2020-01-29 2020-04-27
 China hCoV-19/Beijing/BJ252/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C10604T A15647G A21137G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_430742
 2020-01-29 2020-04-27
 China hCoV-19/Beijing/BJ251/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATC1- C10604T A15647G A21137G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_434568 MT114417
 2020-01-29 2020-02-24
 China SARS-CoV-2/human/HKG/HKU-907b/2020
 C6501T C8782T T28144C AAAAAAAAAAAA29892-

EPI_ISL_434570 MT114419
 2020-01-29 2020-02-24
 China SARS-CoV-2/human/HKG/HKU-908b/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C8092T G11083T AAAAAAAAAAAAAAAA29888-

EPI_ISL_435137
 2020-01-29 2020-05-03
 United Arab Emirates hCoV-19/United Arab Emirates/L5630/2020
 C8782T C12880T T28144C C29095T

EPI_ISL_437618 MT447160
 2020-01-29 2020-05-01
 Thailand SARS-CoV-2/human/THA/SI200615-NT/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- G2117T C2915A G15327T G25217T GAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29745-

EPI_ISL_447916
 2020-01-29 2020-05-19
 Thailand hCoV-19/Thailand/Bangkok_323/2020
 C6941T A18114G C26370T AAAAAAAAAAAA29892-

EPI_ISL_447917
 2020-01-29 2020-05-19
 Thailand hCoV-19/Thailand/Nonthaburi_363/2020
 C1150T G26144T AAAAAAAAAAAA29892-

EPI_ISL_450199 MT270102
 2020-01-29 2020-03-28
 Germany SARS-CoV-2/human/DEU/BavPat4-ChVir1019/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T G6446A C9891Y A23403G AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_451330
 2020-01-29 2020-05-24
 China hCoV-19/China/SC-NC-071/2020
 AAGATTTTC729- C26404T T28144C

EPI_ISL_451335
 2020-01-29 2020-05-24
 China hCoV-19/China/SC-NC-076/2020
 C17676T CC18109-T

EPI_ISL_451336
 2020-01-29 2020-05-24
 China hCoV-19/China/SC-NC-077/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- G11369A

EPI_ISL_451363
 2020-01-29 2020-05-24
 China hCoV-19/China/SC-PHCC2-043/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500-

EPI_ISL_451366
 2020-01-29 2020-05-24
 China hCoV-19/China/SC-PHCC2-046/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- CC18109-T TG18987-

EPI_ISL_497771
 2020-01-29 2020-07-25
 China hCoV-19/Hong Kong/HKU-200723-004/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T13929C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_497797
 2020-01-29 2020-07-25
 China hCoV-19/Hong Kong/HKU-200723-030/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C9967T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_497827
 2020-01-29 2020-07-25
 China hCoV-19/Hong Kong/HKU-200723-060/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C9967T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529995
 2020-01-29 2020-09-10
 Spain hCoV-19/Spain/MD-H12-64/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C14408T G22468T A23403G A24129G GGG28881AAC T29685G ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_539338
 2020-01-29 2020-09-16
 China hCoV-19/Hunan/HN-CIDC-P10/2020
 T25525A

EPI_ISL_539339
 2020-01-29 2020-09-16
 China hCoV-19/Hunan/HN-CIDC-P11/2020
 C15951T T25525A

MT020781
 2020-01-29 2020-02-04
 Finland nCoV-FIN-29-Jan-2020
 A1C C21707T TGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29807-

MT123293
 2020-01-29 2020-02-28
 China SARS-CoV-2/human/CHN/IQTC03/2020
 ATTAAA1- G654A G6819T T6996C C17373T G29527A AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

MW011767
 2020-01-29 2020-09-16
 China SARS-CoV-2/human/CHN/P10-SARS-CoV-2/2020
 T25525A

MW011768
 2020-01-29 2020-09-16
 China SARS-CoV-2/human/CHN/P11-SARS-CoV-2/2020
 C15951T T25525A

NMDC60013277
 2020-01-29 2020-06-01
 China hCoV-19/Guangzhou/ID100/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C26447G T28144C T28250G A28254- C29095T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_407896 MT050415
 2020-01-30 2020-02-06
 Australia SARS-CoV-2/human/AUS/QLD02/2020_FSS916
 ATTAAA1- C8782T C24990T C25587T T28144C G28878A G29742A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_412029
 2020-01-30 2020-02-24
 China hCoV-19/Hong Kong/VB20024950-2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- T13929C G26144T TATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29832-

EPI_ISL_412869
 2020-01-30 2020-02-28
 South Korea hCoV-19/South Korea/KCDC05/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCAC1- A1740C T8767C C8782T C17104T G26167T T28144C G29593A A29869G AAAAAAAAAAAAAAAA29888-

EPI_ISL_412870
 2020-01-30 2020-02-28
 South Korea hCoV-19/South Korea/KCDC06/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCAC1- T4402C G5062T C8782T T28144C AAAAAAAAAAAAAAAA29888-

EPI_ISL_413853 NMDC60013020-01
 2020-01-30 2020-03-09
 China hCoV-19/Guangdong/2020XN4243-P0035/2020
 C8782T T28144C G28878A G29742A

EPI_ISL_413854 NMDC60013021-01
 2020-01-30 2020-03-09
 China hCoV-19/Guangdong/2020XN4475-P0042/2020
 C6501T C8782T T28144C

EPI_ISL_413858 NMDC60013025-01
 2020-01-30 2020-03-09
 China hCoV-19/Guangdong/2020XN4459-P0041/2020
 C8782T T28144C

EPI_ISL_413860 NMDC60013027-01
 2020-01-30 2020-03-09
 China hCoV-19/Guangdong/2020XN4273-P0036/2020
 T8767C C8782T T28144C G29593A

EPI_ISL_414941
 2020-01-30 2020-03-16
 China hCoV-19/Shandong/LY008-2/2020
 ATTAAAGGTTTATACC1- T3171C C8782T T28144C AAAAAAAAAAAAAAAAAAA29885-

EPI_ISL_416326
 2020-01-30 2020-03-20
 China hCoV-19/Shanghai/SH0013/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C8782T T28144C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416331
 2020-01-30 2020-03-20
 China hCoV-19/China/Shanghai/SH0022
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G1397A A10323G C11074T G11083T T28688C G29742T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416332
 2020-01-30 2020-03-20
 China hCoV-19/Shanghai/SH0023/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G1397A A10323G C11074T G11083T T28688C G29742T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416333
 2020-01-30 2020-03-20
 China hCoV-19/Shanghai/SH0024/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C8782T T28144C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416352
 2020-01-30 2020-03-20
 China hCoV-19/Shanghai/SH0043/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C8782T T28144C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416365
 2020-01-30 2020-03-20
 China hCoV-19/Shanghai/SH0058/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- T4463C C4596T A5084G T7144A T8800C C28854T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416366
 2020-01-30 2020-03-20
 China hCoV-19/Shanghai/SH0059/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G285T C8782T T23986C G25947T T28144C C29095T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_421241
 2020-01-30 2020-04-07
 China hCoV-19/Nanchang/JX177/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C3768T T8767C C8782T C12076T T28144C AAAAAAAAAAAA29892-

EPI_ISL_425118
 2020-01-30 2020-04-14
 South Korea hCoV-19/Korea/KCDC2002/2020
 ATTAAAGGTTTATACCT1- T8767C C8782T C17104T G26167T T28144C G29593A

EPI_ISL_428442 NMDC60013105-01
 2020-01-30 2020-04-21
 China hCoV-19/Guangdong/20SF1136/2020
 G26144T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_428444 NMDC60013107-01
 2020-01-30 2020-04-21
 China hCoV-19/Guangdong/20SF1152/2020
 G3518T G12797A A17423G G28655T C28854T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_428445 NMDC60013108-01
 2020-01-30 2020-04-21
 China hCoV-19/Guangdong/20SF1153/2020
 A5084G G27261A C28854T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_450209 MT270112
 2020-01-30 2020-03-28
 Germany SARS-CoV-2/human/DEU/BavPat2-ChVir984-ChVir1017/2020
 ATTAAAGGTTTATAC1- C241T C3037T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_450409 MT365029
 2020-01-30 2020-04-17
 China SARS-CoV-2/human/HKG/HKU-911a/2020
 C9967T AAAAAAAAAAAA29892-

EPI_ISL_450412 MT365032
 2020-01-30 2020-04-17
 China SARS-CoV-2/human/HKG/HKU-904a/2020
 ATTA1- C4158T C8782T C18828T T28144C AAAAAAAAAAAA29892-

EPI_ISL_451302
 2020-01-30 2020-05-24
 Italy hCoV-19/Italy/INMI2-N/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- G11083T G26144T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_451314
 2020-01-30 2020-05-24
 China hCoV-19/China/SC-GA-063/2020
 C18512T

EPI_ISL_451315
 2020-01-30 2020-05-24
 China hCoV-19/China/SC-GA-064/2020
 C18512T

EPI_ISL_451332
 2020-01-30 2020-05-24
 China hCoV-19/China/SC-NC-073/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- C17573T A18535- T28144C

EPI_ISL_451334
 2020-01-30 2020-05-24
 China hCoV-19/China/SC-NC-075/2020
 C3037T C16247T

EPI_ISL_451337
 2020-01-30 2020-05-24
 China hCoV-19/China/SC-NC-078/2020
 C18060T G20275T T28144C G28195T

EPI_ISL_451343
 2020-01-30 2020-05-24
 China hCoV-19/China/SC-NJ-094/2020
 CC18109-T A22511G

EPI_ISL_451389
 2020-01-30 2020-05-24
 China hCoV-19/China/SC-WCH4-287/2020
 C19145T T28144C

EPI_ISL_451395
 2020-01-30 2020-05-24
 China hCoV-19/China/SC-WCH4-301/2020
 A13175G C17676T

EPI_ISL_451396
 2020-01-30 2020-05-24
 China hCoV-19/China/SC-YA-087/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- C17373T CC18109-T

EPI_ISL_455603
 2020-01-30 2020-06-01
 Australia hCoV-19/Australia/VPRL014/2020
 C3037T C17074T C27213T T27384C

EPI_ISL_455790
 2020-01-30 2020-06-01
 Malaysia hCoV-19/Malaysia/IMR_WC119/2020
 ATTAAAGGTTTATACCTTCCCA1- G4390T C5717T C8782T G16075T T28144C TAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29693-

EPI_ISL_463894
 2020-01-30 2020-06-10
 China hCoV-19/Shaoxing/02/2020
 ATTAAAG1- C8782T T28144C AAAAAAAAAAAAAAAAA29887-

EPI_ISL_463895
 2020-01-30 2020-06-10
 China hCoV-19/Shaoxing/03/2020
 ATTAAAGGTT1- C8782T T28144C

EPI_ISL_468032
 2020-01-30 2020-06-16
 Australia hCoV-19/Australia/SAP214/2020
 AT1- C3037T C17074T C27213T T27384C

EPI_ISL_468037
 2020-01-30 2020-06-16
 Australia hCoV-19/Australia/SAP305/2020
 C3037T C17074T C27213T T27384C

EPI_ISL_480779 MT745747
 2020-01-30 2020-07-02
 Australia SARS-CoV-2/human/AUS/SA02/2020
 C3037T C17074T C27213T T27384C

EPI_ISL_480780 MT745748
 2020-01-30 2020-07-02
 Australia SARS-CoV-2/human/AUS/SA03/2020
 C3037T C17074T C27213T T27384C

EPI_ISL_497962
 2020-01-30 2020-07-26
 South Korea hCoV-19/Korea/KCDC2061/2020
 ATTAAA1- A26- C28T G7675T T8767C C8782T C17104T C18167T G26167T T28144C G29134A G29593A C29743T T29867A

EPI_ISL_529996
 2020-01-30 2020-09-10
 Spain hCoV-19/Spain/MD-H12-65/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1687T C3037T C14408T A20268G C21742T A23403G C26735T ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

MT066156
 2020-01-30 2020-02-14
 Italy SARS-CoV-2/human/ITA/INMI1/2020
 A2269T G26144T GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

CNA0013700
 2020-01-31 2020-03-09
 China Guangzhou/GZ8H0004/2020
 AT1GC AA4GC G8A -A11TGGAG C8782T C12534T C13072T G27235A T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

CNA0013701
 2020-01-31 2020-03-09
 China Guangzhou/GZ8H0005/2020
 A1G A4G -11TTAATTGTTACTTTCCTTTACAATCATATGGTTTCCAACCCAC C8782T C12534T C13072T T28144C A29878G A29882G A29887G A29890G A29893G A29896G AAAAA29899-

EPI_ISL_408489 MT066175
 2020-01-31 2020-02-09
 Taiwan SARS-CoV-2/NTU01/TWN/human/2020
 C8782T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_408666 LC522974
 2020-01-31 2020-02-10
 Japan 2019-nCoV/Japan/TY/WK-501/2020
 ATT1- C2662T C8782T T28144C C29095T AAAAAAAAAAAAAAAAAAAAAA29882-

EPI_ISL_408667 LC522975
 2020-01-31 2020-02-10
 Japan 2019-nCoV/Japan/TY/WK-521/2020
 ATT1- C2662T C8782T T28144C C29095T G29705T AAAAAAAAAAAAAAAAAAAAAA29882-

EPI_ISL_408670 MT039887
 2020-01-31 2020-02-10
 United States 2019-nCoV/USA-WI1/2020
 C17373T ATT20298- AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_410546
 2020-01-31 2020-02-17
 Italy hCoV-19/Italy/INMI1-cs/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAG1- G11083T G26144T TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_412871
 2020-01-31 2020-02-28
 South Korea hCoV-19/South Korea/KCDC07/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCAC1- C1779T T4402C G5062T C8782T C15017T T28144C AAAAAAAAAAAAAAAA29888-

EPI_ISL_413523 MT050493
 2020-01-31 2020-02-11
 India SARS-CoV-2/human/IND/166/2020
 ATTAAAGGTTTATACCTTCC1- A1691G C6501T C8782T C16877T C24351T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_413857 NMDC60013024-01
 2020-01-31 2020-03-09
 China hCoV-19/Guangdong/2020XN4448-P0002/2020
 A1430G G5155A G16535T C18568T A19705G

EPI_ISL_416390
 2020-01-31 2020-03-20
 China hCoV-19/Shanghai/SH0094/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C3885A G6513T G20335A G29449T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_428488
 2020-01-31 2020-04-21
 Taiwan hCoV-19/Taiwan/8/2020
 ATTA1- C8299T A28792T AAAAAAAAAAAA29892-

EPI_ISL_428489
 2020-01-31 2020-04-21
 Taiwan hCoV-19/Taiwan/5/2020
 A4T C8299T A28792T AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_447913
 2020-01-31 2020-05-19
 Thailand hCoV-19/Thailand/Bangkok_238/2020
 C2942T G4390T C8782T T28144C AAAAAAAAAAAA29892-

EPI_ISL_450410 MT365030
 2020-01-31 2020-04-17
 China SARS-CoV-2/human/HKG/HKU-913a/2020
 A17423G A20667G C28854T AAAAAAAAAAAA29892-

EPI_ISL_451325
 2020-01-31 2020-05-24
 China hCoV-19/China/SC-MY-059/2020
 C1342T C10507T C18060T T28144C

EPI_ISL_451344
 2020-01-31 2020-05-24
 China hCoV-19/China/SC-NJ-095/2020
 

EPI_ISL_451374
 2020-01-31 2020-05-24
 China hCoV-19/China/SC-WCH-082/2020
 A13175G

EPI_ISL_451397
 2020-01-31 2020-05-24
 China hCoV-19/China/SC-YA-088/2020
 CC18109-T

EPI_ISL_451398
 2020-01-31 2020-05-24
 China hCoV-19/China/SC-YB-085/2020
 

EPI_ISL_452363
 2020-01-31 2020-05-27
 China hCoV-19/Beijing/DT-WH04/2020
 A2966C T28144C C28253T

EPI_ISL_475997
 2020-01-31 2020-06-25
 Singapore hCoV-19/Singapore/466/2020
 C8782T C19910Y T20880Y C23896Y T28144C G28878A AAAAAAAAAAAA29892-

EPI_ISL_476139
 2020-01-31 2020-06-25
 Sweden hCoV-19/Sweden/20-02114/2020
 C12194T A17376G G26144T

EPI_ISL_497963
 2020-01-31 2020-07-26
 South Korea hCoV-19/Korea/KCDC2062/2020
 ATTAAA1- A26- C28T T4402C G5062T C8782T T28144C C29743T

EPI_ISL_529997
 2020-01-31 2020-09-10
 Spain hCoV-19/Spain/MD-H12-66/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1063T C3037T C14408T A20268G A23403G T24346C G29734C ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

GWHAORL01000001
 2020-01-31 2020-09-11
 China SARS-CoV-2/human/CHN/Beijing-P6.1/2020
 C8782T T28144C

MT077125
 2020-01-31 2020-02-17
 Italy SARS-CoV-2/human/ITA/INMI1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAG1- G11083T G26144T TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

NMDC60013278
 2020-01-31 2020-06-01
 China hCoV-19/Guangzhou/ID101/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C26447G T28144C T28250G A28254- C29095T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

NMDC60013283
 2020-01-31 2020-06-01
 China hCoV-19/Guangzhou/ID103/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A6659G C8782T C10604T A15647G G23856T T28144C G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_411929 MT039890
 2020-01-xx 2020-02-11
 South Korea SNU01
 G2971T C6031T C12115T T15597C C20936T C22224G G25775T G26144T T26354A

EPI_ISL_414511 LC529905
 2020-01-xx 2020-03-04
 Japan TKYE6182_2020
 C15324T C25810G C29303T

EPI_ISL_434560 MT186683
 2020-01-xx 2020-03-12
 China SARS-CoV-2/human/HKG/HK20/2020
 T13929C T21467C G26144T AAAAAAAAAAAAAAA29889-

EPI_ISL_450201 MT270104
 2020-01-xx 2020-03-28
 Germany SARS-CoV-2/human/DEU/BavPat6-ChVir1247/2020
 ATTAAAGGTTTATA1- C241T C3037T G6446A A23403G TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_450202 MT270105
 2020-01-xx 2020-03-28
 Germany SARS-CoV-2/human/DEU/BavPat5-ChVir1248/2020
 ATTAAAGGTT1- C241T C3037T G6446A A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_450205 MT270108
 2020-01-xx 2020-03-28
 Germany SARS-CoV-2/human/DEU/BavPat9-ChVir1433/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6446A C22323T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_450206 MT270109
 2020-01-xx 2020-03-28
 Germany SARS-CoV-2/human/DEU/BavPat11-ChVir1459/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6446A A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_407988
 2020-02-01 2020-02-07
 Singapore hCoV-19/Singapore/3/2020
 AT1- G11083T TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_409024 EPI_ISL_412030
 2020-02-01 2020-02-24
 China hCoV-19/Hong Kong/VB20026565-2/2020
 ATTAAAGGTTTATACCTTCCCA1- G11083T G29841A ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_412872
 2020-02-01 2020-02-28
 South Korea hCoV-19/South Korea/KCDC12/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCAC1- ACAAAAAAAAAAAAAA29869-

EPI_ISL_413861 NMDC60013028-01
 2020-02-01 2020-03-09
 China hCoV-19/Guangdong/GD2020080-P0010/2020
 A11782G C12473T

EPI_ISL_413863 NMDC60013030-01
 2020-02-01 2020-03-09
 China hCoV-19/Guangdong/GD2020087-P0008/2020
 C22787G G26144T

EPI_ISL_416336
 2020-02-01 2020-03-20
 China hCoV-19/Shanghai/SH0027/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- T49A C14676T C28826T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416338
 2020-02-01 2020-03-20
 China hCoV-19/Shanghai/SH0029/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C8782T C24034T T26729C G28077C T28144C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416341
 2020-02-01 2020-03-20
 China hCoV-19/Shanghai/SH0032/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C8782T C24034T T26729C G28077C T28144C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416361
 2020-02-01 2020-03-20
 China hCoV-19/Shanghai/SH0053/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C15324T G20383T C29303T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416367
 2020-02-01 2020-03-20
 China hCoV-19/Shanghai/SH0060/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A9437T C12473T C25047T A27669T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416370
 2020-02-01 2020-03-20
 China hCoV-19/Shanghai/SH0067/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C9442T T25209C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416372
 2020-02-01 2020-03-20
 China hCoV-19/Shanghai/SH0069/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A4550G C8782T T9477A T28144C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416379
 2020-02-01 2020-03-20
 China hCoV-19/Shanghai/SH0076/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C9442T T25209C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416381
 2020-02-01 2020-03-20
 China hCoV-19/Shanghai/SH0079/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C8782T C24034T T26729C G28077C T28144C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416387
 2020-02-01 2020-03-20
 China hCoV-19/Shanghai/SH0088/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C15324T T24405G C29303T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_418809
 2020-02-01 2020-03-30
 Japan hCoV-19/Japan/UT-NCGM02/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C2662T C3792T C8782T T28144C C29095T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_429085 CNA0013938
 2020-02-01 2020-04-23
 China Guangzhou/GZMU0033/2020
 C21707T AAAAAAAAAAAA29892-

EPI_ISL_429086 CNA0013939
 2020-02-01 2020-04-23
 China Guangzhou/GZMU0034/2020
 T2A AA4CT C21707T

EPI_ISL_429088 CNA0013940
 2020-02-01 2020-04-23
 China Guangzhou/GZMU0035/2020
 C21707T AAAAAAAAAAAA29892-

EPI_ISL_429104 CNA0013956
 2020-02-01 2020-04-23
 China Guangzhou/GZMU0036/2020
 AT1CC A4G C21707T A29866G G29868A C29870A AA29872TT AAAA29876TTTT AA29881GT AAAA29884GTGC

EPI_ISL_429854
 2020-02-01 2020-04-24
 China hCoV-19/Lishui/LS557/2020
 ATTAAAGGTTT1- C8782T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_437624 MT447154
 2020-02-01 2020-05-01
 Thailand SARS-CoV-2/human/THA/SI200893-NT/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C1150T G26144T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_447918
 2020-02-01 2020-05-19
 Thailand hCoV-19/Thailand/Bangkok_580/2020
 A8388T C8782T T8987C T28144C C29095T AAAA29900-

EPI_ISL_450203 MT270106
 2020-02-01 2020-03-28
 Germany SARS-CoV-2/human/DEU/BavPat7-ChVir1289/2020
 AT1- C241T C3037T G6446A A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_451316
 2020-02-01 2020-05-24
 China hCoV-19/China/SC-GA-065/2020
 C8281T G26144T

EPI_ISL_451322
 2020-02-01 2020-05-24
 China hCoV-19/China/SC-MY-056/2020
 T28144C

EPI_ISL_451327
 2020-02-01 2020-05-24
 China hCoV-19/China/SC-NC-067/2020
 C17373T

EPI_ISL_451333
 2020-02-01 2020-05-24
 China hCoV-19/China/SC-NC-074/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- T28144C C28253T

EPI_ISL_452360
 2020-02-01 2020-05-27
 China hCoV-19/Beijing/DT-WH01/2020
 

EPI_ISL_452362
 2020-02-01 2020-05-27
 China hCoV-19/Beijing/DT-WH03/2020
 T6552G T8022G

EPI_ISL_455466
 2020-02-01 2020-05-30
 China hCoV-19/Yingtan/JX2480/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C2574T T6348C AAAAAAAAAAAA29892-

EPI_ISL_529998
 2020-02-01 2020-09-10
 Spain hCoV-19/Spain/MD-H12-67/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G G29734C ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

GWHAORI01000001
 2020-02-01 2020-09-11
 China SARS-CoV-2/human/CHN/Beijing-P4.2/2020
 G237T C241T G2229A C3037T C14408T T19561A A23403G

EPI_ISL_410719
 2020-02-02 2020-02-18
 Singapore hCoV-19/Singapore/11/2020
 ATTAAAGG1- A13679G C17373T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_411218
 2020-02-02 2020-02-19
 France hCoV-19/France/IDF0571/2020
 C1190T C9438T G11083T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_413697 CNA0013886
 2020-02-02 2020-03-09
 China Weifang/WFCDC0012/2020
 ATTAAAGGTTTAT1- C207T T946C C8782T A11430G T28144C ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_414510 MT121215
 2020-02-02 2020-02-27
 China SARS-CoV-2/human/CHN/SH01/2020
 C6026T C12473T -29904AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

EPI_ISL_416047
 2020-02-02 2020-03-20
 China hCoV-19/Hangzhou/ZJU-06/2020
 AT1CCCCCTTTTCAAGCAGAAGACGGCATACGAGATACGAATTCGTGAC AA4GG -G7GTTCAGACGTGTGCTCTTCCA T10C C3885A C12778T T13270C G29449T

EPI_ISL_416325
 2020-02-02 2020-03-20
 China hCoV-19/Shanghai/SH0012/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G21853A G26144T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416330
 2020-02-02 2020-03-20
 China hCoV-19/Shanghai/SH0021/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C8782T C15480T G25767T T28144C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416335
 2020-02-02 2020-03-20
 China hCoV-19/Shanghai/SH0026/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C207T T946C C6363T C8782T A11430G T28144C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416340
 2020-02-02 2020-03-20
 China hCoV-19/Shanghai/SH0031/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C3768T A16474G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416362
 2020-02-02 2020-03-20
 China hCoV-19/Shanghai/SH0054/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G28845T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416397
 2020-02-02 2020-03-20
 China hCoV-19/Shanghai/SH0107/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- G61T C20692T C23533T C26326T G28233A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416398
 2020-02-02 2020-03-20
 China hCoV-19/Shanghai/SH0109/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C5239T C17373T C28830A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416401
 2020-02-02 2020-03-20
 China hCoV-19/Shanghai/SH0114/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C20692T C25006T G28233A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416403
 2020-02-02 2020-03-20
 China hCoV-19/Shanghai/SH0117/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- T54A C8782T T9370G T28144C G28878A G29742A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416405
 2020-02-02 2020-03-20
 China hCoV-19/Shanghai/SH0121/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C11962T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416409
 2020-02-02 2020-03-20
 China hCoV-19/Shanghai/SH0128/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A1566C C8782T C24034T T26729C G28077C T28144C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_421257
 2020-02-02 2020-04-07
 China hCoV-19/Shangrao/JX1215/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C21707T AAAAAAAAAAAA29892-

EPI_ISL_426164
 2020-02-02 2020-04-15
 South Korea hCoV-19/Korea/KCDC2004/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1-

EPI_ISL_426168
 2020-02-02 2020-04-15
 South Korea hCoV-19/Korea/KCDC2006/2020
 ATTAAAGGTTTATAC1- C16T C4276T T4402C G5062T C8782T T28144C ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_430728
 2020-02-02 2020-04-27
 China hCoV-19/Beijing/BJ492/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C16293T T28144C C29095T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_450411 MT365031
 2020-02-02 2020-04-17
 China SARS-CoV-2/human/HKG/HKU-915a/2020
 A17423G C28854T AAAAAAAAAAAA29892-

EPI_ISL_451321
 2020-02-02 2020-05-24
 China hCoV-19/China/SC-MY-055/2020
 A28145C

EPI_ISL_451324
 2020-02-02 2020-05-24
 China hCoV-19/China/SC-MY-058/2020
 T13243C CC18109-T

EPI_ISL_451326
 2020-02-02 2020-05-24
 China hCoV-19/China/SC-MY-060/2020
 G3013T T13243C G27261A T27356C

EPI_ISL_451328
 2020-02-02 2020-05-24
 China hCoV-19/China/SC-NC-068/2020
 C3717T A16824G C17373T

EPI_ISL_451331
 2020-02-02 2020-05-24
 China hCoV-19/China/SC-NC-072/2020
 C3717T A16824G C17373T

EPI_ISL_451383
 2020-02-02 2020-05-24
 China hCoV-19/China/SC-WCH3-254/2020
 C173T A3517G C8782T C21711T C23893T G25909A T28144C G28878A C29555T C29640T G29742A

EPI_ISL_451386
 2020-02-02 2020-05-24
 China hCoV-19/China/SC-WCH4-284/2020
 T14451G

EPI_ISL_529999
 2020-02-02 2020-09-10
 Spain hCoV-19/Spain/MD-H12-68/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6286T C14408T G14863A C19164T A20268G A23403G ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_536435
 2020-02-02 2020-09-16
 Singapore hCoV-19/Singapore/894/2020
 A1- C1780T C8782T T28144C C29095T AAAAAAAAAAAA29892-

NMDC60013279
 2020-02-02 2020-06-01
 China hCoV-19/Guangzhou/ID099/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C26447G T28144C T28250G A28254- G29041C C29095T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_407976
 2020-02-03 2020-02-07
 Belgium hCoV-19/Belgium/GHB-03021/2020
 C8782T T28144C A29863T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_410535
 2020-02-03 2020-02-17
 Singapore hCoV-19/Singapore/4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C8782T T28144C G28878A CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_410714
 2020-02-03 2020-02-18
 Singapore hCoV-19/Singapore/8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C21859T G26144T AGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29797-

EPI_ISL_416339
 2020-02-03 2020-03-20
 China hCoV-19/Shanghai/SH0030/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C4655T C8782T G9890T G20527T T28144C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416425
 2020-02-03 2020-03-21
 China hCoV-19/Hangzhou/ZJU-07/2020
 -T2AGAGTGCTTAG GG7AT -10TTAATCAGCACGAAGTTCTACTTGCACCA T1405C G9802T A19945G C25267T C27615G

EPI_ISL_418990
 2020-02-03 2020-04-01
 China hCoV-19/Hangzhou/ZJU-010/2020
 ATTAAAGGTTTATACCTTC1- C16114T G22205C -29904AAAAAAAAAAAAAAAAAA

EPI_ISL_421250
 2020-02-03 2020-04-07
 China hCoV-19/Shangrao/JX1177/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C1912T G6266A C12896T C28854T T28867C AAAAAAAAAAAA29892-

EPI_ISL_421251
 2020-02-03 2020-04-07
 China hCoV-19/Shangrao/JX1176/2020
 ATTAAAGGTTTATACCTTCCCAGG1- G845T C1912T A3375C C12896T C28854T T28867C AAAAAAAAAAAA29892-

EPI_ISL_421254
 2020-02-03 2020-04-07
 China hCoV-19/Shangrao/JX1178/2020
 ATTAAAGGTTTATACCTTCCCAGG1- A13555T AAAAAAAAAAAA29892-

EPI_ISL_437617 MT447161
 2020-02-03 2020-05-01
 Thailand SARS-CoV-2/human/THA/SI201712-NT/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- G26144T C29774T GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_450204 MT270107
 2020-02-03 2020-03-28
 Germany SARS-CoV-2/human/DEU/BavPat8-ChVir1356/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6446A A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_451300
 2020-02-03 2020-05-24
 Italy hCoV-19/Italy/INMI1-N/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- A2269T G11083T G26144T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_451301
 2020-02-03 2020-05-24
 Italy hCoV-19/Italy/INMI2-B/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- G11083T G26144T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_451317
 2020-02-03 2020-05-24
 China hCoV-19/China/SC-GA-066/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- G626T A23469T T28144C T28157C

EPI_ISL_451341
 2020-02-03 2020-05-24
 China hCoV-19/China/SC-NJ-092/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- A1087- T13243C

EPI_ISL_451357
 2020-02-03 2020-05-24
 China hCoV-19/China/SC-PHCC1-036/2020
 G1495T C13821T C18377T G29737A

EPI_ISL_451358
 2020-02-03 2020-05-24
 China hCoV-19/China/SC-PHCC2-038/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- T13243C TG18987-

EPI_ISL_451372
 2020-02-03 2020-05-24
 China hCoV-19/China/SC-PHCC2-052/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- T11566A T17407C CC18109-T

EPI_ISL_451373
 2020-02-03 2020-05-24
 China hCoV-19/China/SC-WCH-081/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- CC18109-T

EPI_ISL_451385
 2020-02-03 2020-05-24
 China hCoV-19/China/SC-WCH3-259/2020
 

EPI_ISL_451394
 2020-02-03 2020-05-24
 China hCoV-19/China/SC-WCH4-293/2020
 C173T C23893T T28144C G28878A C29640T G29742A

EPI_ISL_454919
 2020-02-03 2020-05-29
 China hCoV-19/Wuhan/HB-WH1-143/2020
 T28144C

EPI_ISL_455463
 2020-02-03 2020-05-30
 China hCoV-19/Jiujiang/JX490/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C9967T AAAAAAAAAAAA29892-

EPI_ISL_489996
 2020-02-03 2020-07-14
 Saudi Arabia hCoV-19/Saudi Arabia/477/2020
 C241T T826C C1218T C3037T C5173T A8031G C14408T A15257G C18877T A23403G G25563T C26735T

EPI_ISL_497783
 2020-02-03 2020-07-25
 China hCoV-19/Hong Kong/HKU-200723-016/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T13929C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530000
 2020-02-03 2020-09-10
 Spain hCoV-19/Spain/MD-H12-69/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T10012C C14408T A20268G A23403G ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

MT755883
 2020-02-03 2020-07-14
 Saudi Arabia SARS-CoV-2/human/SAU/477/2020
 C241T T826C C1218T C3037T C5173T A8031G C14408T A15257G C18877T A23403G G25563T C26735T

EPI_ISL_410715
 2020-02-04 2020-02-18
 Singapore hCoV-19/Singapore/9/2020
 C10138T G26144T AAAAAAAAAAAA29892-

EPI_ISL_410716
 2020-02-04 2020-02-18
 Singapore hCoV-19/Singapore/10/2020
 AT1- C10138T G26144T AAAAAAAAAAAA29892-

EPI_ISL_413711 CNA0013885
 2020-02-04 2020-03-09
 China Weifang/WFCDC0014/2020
 ATTAAAGGTT1- C6501T C8782T C16887T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_413761 CNA0013877
 2020-02-04 2020-03-09
 China Weifang/WFCDC0026/2020
 ATTAAAGGTTTAT1- C207T T946C C8782T A11430G T28144C ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_416337
 2020-02-04 2020-03-20
 China hCoV-19/Shanghai/SH0028/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- A14823T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416342
 2020-02-04 2020-03-20
 China hCoV-19/Shanghai/SH0033/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A871G A3027G C3787T G11083T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416353
 2020-02-04 2020-03-20
 China hCoV-19/Shanghai/SH0044/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G2293T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416355
 2020-02-04 2020-03-20
 China hCoV-19/Shanghai/SH0047/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C3885A C12778T T13270C A23670G T28340C G29449T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416886
 2020-02-04 2020-03-23
 Malaysia hCoV-19/Malaysia/MKAK-CL-2020-6430/2020
 ATTAAAGGTTTAT1- T6025C C8782T C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_417518 MT374101
 2020-02-04 2020-02-04
 Taiwan SARS-CoV-2/human/TWN/CGMH-CGU-02/2020
 C8782T A16841G C21707T C24213T ACTTGAACTGCAAGATCATAATGAAACTTGTCACGCCTAAACGAACATGAAATTTCTTGTTTTCTTAGGAATCATCACAACTGTAGCTGCATTTCACCAAGAATGTAGTTTACAGTCATGTACTCAACATCAACCATATGTAGTTGATGACCCGTGTCCTATTCACTTCTATTCTAAATGGTATATTAGAGTAGGAGCTAGAAAATCAGCACCTTTAATTGAATTGTGCGTGGATGAGGCTGGTTCTAAATCACCCATTCAGTACATCGATATCGGTAATTATACAGTTTCCTGTTTACCTTTTACAATTAATTGCCAGGAACCTAAATTGGGTAGTCTTGTAGTGCGTTGTTCGTTCTATGAAGACTTTTTAGAGTATCAT27848-

EPI_ISL_418991
 2020-02-04 2020-04-01
 China hCoV-19/Hangzhou/ZJU-011/2020
 ATTAAAGGTTTATACCTTC1- T22303G TTG27775CGA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_426166
 2020-02-04 2020-04-15
 South Korea hCoV-19/Korea/KCDC2005/2020
 ATTAAAGGTTTATACC1- AAAAAAAAAAAAAAAA29888-

EPI_ISL_447919
 2020-02-04 2020-05-19
 Thailand hCoV-19/Thailand/Samut prakarn_840/2020
 C13665T A23403G G26144T C26895T C29774T AAAAAAAAAAAA29892-

EPI_ISL_451346
 2020-02-04 2020-05-24
 China hCoV-19/China/SC-PHCC1-025/2020
 C8782T T28144C C29095T C29586T

EPI_ISL_451370
 2020-02-04 2020-05-24
 China hCoV-19/China/SC-PHCC2-050/2020
 C8782T T28144C C29095T C29586T

EPI_ISL_451399
 2020-02-04 2020-05-24
 China hCoV-19/China/SC-YB-086/2020
 TAAAA17201- C17373T T25382C

EPI_ISL_452357
 2020-02-04 2020-05-27
 China hCoV-19/Beijing/DT-WH02/2020
 G15327T C18029T G24812T A28305C G29742T

EPI_ISL_454981
 2020-02-04 2020-05-29
 China hCoV-19/Wuhan/HB-WH5-240/2020
 

EPI_ISL_455391
 2020-02-04 2020-05-29
 China hCoV-19/Wuhan/HB-WH5-228/2020
 TG14865- G20623T A20636- G22343C

EPI_ISL_489997
 2020-02-04 2020-07-14
 Saudi Arabia hCoV-19/Saudi Arabia/492/2020
 C241T C3037T A5277G C14408T C18877T A23403G G23426T T24295C G25563T C26735T

EPI_ISL_530001
 2020-02-04 2020-09-10
 Spain hCoV-19/Spain/MD-H12-70/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1063T C3037T C14408T A20268G A23403G C25427T G29734C ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

MT755884
 2020-02-04 2020-07-14
 Saudi Arabia SARS-CoV-2/human/SAU/492/2020
 C241T C3037T A5277G C14408T C18877T A23403G G23426T T24295C G25563T C26735T

EPI_ISL_410218 MT066176
 2020-02-05 2020-02-13
 Taiwan SARS-CoV-2/NTU02/TWN/human/2020
 A9034G C9491T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_410717 MT050416
 2020-02-05 2020-02-18
 Australia SARS-CoV-2/human/AUS/QLD03/2020_FSS917
 ATTAA1- C8782T T18603C T28144C G28878A G29742A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_410718
 2020-02-05 2020-02-18
 Australia hCoV-19/Australia/QLD04/2020
 ATTAA1- C8782T T28144C G28878A G29742A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_412966 MT123290
 2020-02-05 2020-02-27
 China SARS-CoV-2/human/CHN/IQTC01/2020
 A1C A4T C15324T C29303T AA29884GG A29887G AAAAAAAAAAAAAAA29889-

EPI_ISL_413729 CNA0013884
 2020-02-05 2020-03-09
 China Weifang/WFCDC0015/2020
 ATTAAAGGTTT1- C8782T T28144C AAAAAAAAAAAAA29891-

EPI_ISL_413746 CNA0013883
 2020-02-05 2020-03-09
 China Weifang/WFCDC0016/2020
 ATTAAAGGTTTAT1- C8782T T28144C ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_413791 CNA0013876
 2020-02-05 2020-03-09
 China Weifang/WFCDC0028/2020
 ATTAAAGGTTT1- C207T T946C C8782T A11430G A16474G C25000A T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_414040
 2020-02-05 2020-03-11
 United Kingdom hCoV-19/England/200641094/2020
 ATG1605- A24495R A28052W

EPI_ISL_416376
 2020-02-05 2020-03-20
 China hCoV-19/Shanghai/SH0073/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_421240
 2020-02-05 2020-04-07
 China hCoV-19/Shangrao/JX1948/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C8782T T28144C AAAAAAAAAAAA29892-

EPI_ISL_426169
 2020-02-05 2020-04-15
 South Korea hCoV-19/Korea/KCDC2007/2020
 ATTAAAGGTTTATAC1-

EPI_ISL_426171
 2020-02-05 2020-04-15
 South Korea hCoV-19/Korea/KCDC2008/2020
 ATT1- T4402C G5062T C8782T C11572T T28144C AAAAAAA29897-

EPI_ISL_426180
 2020-02-05 2020-04-15
 South Korea hCoV-19/Korea/KCDC2010/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCA1- T4402C G5062T C8782T C17474T T28144C AAAAAAAAAAAAAAAA29888-

EPI_ISL_429080 CNA0013933
 2020-02-05 2020-04-23
 China Guangzhou/GZMU0019/2020
 C241T C3037T A23403G AAAAAAAAAAAA29892-

EPI_ISL_429082 CNA0013935
 2020-02-05 2020-04-23
 China Guangzhou/GZMU0023/2020
 C8782T T28144C AAAAAAAAAAAA29892-

EPI_ISL_429083 CNA0013936
 2020-02-05 2020-04-23
 China Guangzhou/GZMU0024/2020
 C8782T T28144C AAAAAAAAAAAA29892-

EPI_ISL_429084 CNA0013937
 2020-02-05 2020-04-23
 China Guangzhou/GZMU0025/2020
 C8782T T28144C AAAAAAAAAAAA29892-

EPI_ISL_444273 MT446312
 2020-02-05 2020-05-08
 China SARS-CoV-2/human/Guangzhou/IQTC05/2020
 AT1- G6819T T6996C C14235T C17373T G29527A AAAAAAAAAAAAAAAAAAAAAA29882-

EPI_ISL_451329
 2020-02-05 2020-05-24
 China hCoV-19/China/SC-NC-069/2020
 C3717T A16824G C17373T T27645C

EPI_ISL_451338
 2020-02-05 2020-05-24
 China hCoV-19/China/SC-NJ-089/2020
 

EPI_ISL_452364
 2020-02-05 2020-05-27
 China hCoV-19/Beijing/DT-BJ04/2020
 G1397A T6552G T8022G T20891G G24812T A28305C G29742T

EPI_ISL_455462
 2020-02-05 2020-05-30
 China hCoV-19/Fuzhou/JX2012/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C1342T C8782T C16466T C18060T T28144C AAAAAAAAAAAA29892-

EPI_ISL_455464
 2020-02-05 2020-05-30
 China hCoV-19/Fuzhou/JX2009/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C1342T C8782T C18060T G23868C T28144C AAAAAAAAAAAA29892-

EPI_ISL_530002
 2020-02-05 2020-09-10
 Spain hCoV-19/Spain/MD-H12-71/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1063T C3037T C14408T A20268G A23403G C25427T G29734C ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

GWHAORJ01000001
 2020-02-05 2020-09-11
 China SARS-CoV-2/human/CHN/Beijing-P5.1/2020
 T4008C T28031C

NMDC60013142-01
 2020-02-05 2020-04-25
 China ICDC-DT005
 ATTAAAGGTTTAT1- G25064A G26144T G28077T A29869T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_410536
 2020-02-06 2020-02-17
 Singapore hCoV-19/Singapore/5/2020
 AT1- C10138T G26144T TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_411954 MT106052
 2020-02-06 2020-02-22
 United States 2019-nCoV/USA-CA7/2020
 C8782T T28144C G28878A G29742A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_412873
 2020-02-06 2020-02-28
 South Korea hCoV-19/South Korea/KCDC24/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCAC1- T3086C C6255T C8782T G11083T G17122A T28144C A29871G AAAAAAAAAAAAAAAA29888-

EPI_ISL_413017
 2020-02-06 2020-03-03
 South Korea hCoV-19/South Korea/KUMC01/2020
 T4402C G5062T G26144T G26640T T26677C T28144C

EPI_ISL_413018
 2020-02-06 2020-03-03
 South Korea hCoV-19/South Korea/KUMC02/2020
 ATTAAAGGTTTA1- A2707G G26144T G26640T T26677C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_416334
 2020-02-06 2020-03-20
 China hCoV-19/Shanghai/SH0025/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1555A C3037T A9238G A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416907
 2020-02-06 2020-03-23
 Malaysia hCoV-19/Malaysia/MKAK-CL-2020-7554/2020
 ATTAAAGGTTTATA1- C1758T C10604T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_422428
 2020-02-06 2020-04-10
 Singapore hCoV-19/Singapore/35/2020
 ATTA1- C5526Y C17074Y AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_428458 NMDC60013121-01
 2020-02-06 2020-04-21
 China hCoV-19/Guangdong/20SF2546/2020
 C8782T C17502T T28144C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_451340
 2020-02-06 2020-05-24
 China hCoV-19/China/SC-NJ-091/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- AA3174TT CT3177AG AA3180TT T13243C A18114G

EPI_ISL_454964
 2020-02-06 2020-05-29
 China hCoV-19/Wuhan/HB-WH4-216/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- C28093T C29303T

EPI_ISL_455461
 2020-02-06 2020-05-30
 China hCoV-19/Yichun/JX2391/2020
 ATTAAAGGTTTATACCTTCCCAGG1- T76A T78G C482T C6543T C8782T T14565A C14567G G26467T T28144C AAAAAAAAAAAA29892-

EPI_ISL_457726
 2020-02-06 2020-06-02
 Taiwan hCoV-19/Taiwan/TSGH-35/2020
 

EPI_ISL_457730
 2020-02-06 2020-06-02
 Taiwan hCoV-19/Taiwan/TSGH-36/2020
 G11083T G26144T -29904AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAACTAATAAAGAAACATACTGGAACATCCC

EPI_ISL_497964
 2020-02-06 2020-07-26
 South Korea hCoV-19/Korea/KCDC2063/2020
 A1- A26- T3086C C6255T C8782T G11083T G17122A T28144C

EPI_ISL_497965
 2020-02-06 2020-07-26
 South Korea hCoV-19/Korea/KCDC2064/2020
 A1- AC27- T3086C C6255T C8782T G11083T G17122A T28144C

EPI_ISL_530003
 2020-02-06 2020-09-10
 Spain hCoV-19/Spain/MD-H12-72/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G A27307G ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

GWHAORH01000001
 2020-02-06 2020-09-11
 China SARS-CoV-2/human/CHN/Beijing-P4.1/2020
 C337T C3429T C6268T C18512T

EPI_ISL_411951 MT093571
 2020-02-07 2020-02-20
 Sweden SARS-CoV-2/human/SWE/01/2020
 G2717A A9274G CT13225GC A17376G T23952G G26144T AAAAAAAAAAAAAAAAA29887-

EPI_ISL_412982 NMDC60013097-01
 2020-02-07 2020-03-02
 China BetaCoV/Wuhan/HBCDC-HB-06/2020
 ATTAAAGGTTTATAC1- G5657A C8782T A23403G A25725G T28144C CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_413748 CNA0013882
 2020-02-07 2020-03-09
 China Weifang/WFCDC0018/2020
 ATTAAAGGTTTATA1- C8782T T28144C ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_413749 CNA0013881
 2020-02-07 2020-03-09
 China Weifang/WFCDC0019/2020
 ATTAAAGGTTT1- C8782T C14768T A17805T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_413750 CNA0013880
 2020-02-07 2020-03-09
 China Weifang/WFCDC0020/2020
 A1- C8782T T28144C AAAAAAAAAAAAAAAAAAAA29884-

EPI_ISL_413751 CNA0013879
 2020-02-07 2020-03-09
 China Weifang/WFCDC0021/2020
 ATTAAAGGTTTA1- C8782T TTT27792- T28144C ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_414043
 2020-02-07 2020-03-11
 United Kingdom hCoV-19/England/200690306/2020
 ATG1605- C15237Y

EPI_ISL_416373
 2020-02-07 2020-03-20
 China hCoV-19/Shanghai/SH0070/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- G1397A G1805A G11083T T28688C C29670T G29742T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416377
 2020-02-07 2020-03-20
 China hCoV-19/Shanghai/SH0074/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C8782T T28144C C29095T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_426173
 2020-02-07 2020-04-15
 South Korea hCoV-19/Korea/KCDC2009/2020
 ATTAAAGGTTTATAC1- C16T T4402C G5062T C8782T C11572T T28144C A29869G AAAAAAAAAAAAAAAA29888-

EPI_ISL_426629
 2020-02-07 2020-04-17
 Taiwan hCoV-19/Taiwan/TSGH-01/2020
 G11083T T19355G A24762T A24788T A24818T C25339T G26144T

EPI_ISL_429074 CNA0013927
 2020-02-07 2020-04-23
 China Guangzhou/GZMU0003/2020
 C21707T AAAAAAAAAAAA29892-

EPI_ISL_429075 CNA0013928
 2020-02-07 2020-04-23
 China Guangzhou/GZMU0008/2020
 C8782T T28144C AAAAAAAAAAAA29892-

EPI_ISL_429077 CNA0013930
 2020-02-07 2020-04-23
 China Guangzhou/GZMU0010/2020
 C21707T AAAAAAAAAAAA29892-

EPI_ISL_429078 CNA0013931
 2020-02-07 2020-04-23
 China Guangzhou/GZMU0013/2020
 C21707T T29867C

EPI_ISL_430740
 2020-02-07 2020-04-27
 China hCoV-19/Beijing/BJ710/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C25460T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_437616 MT447162
 2020-02-07 2020-05-01
 Thailand SARS-CoV-2/human/THA/SI202205-NT/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C8782T G17814T T28144C C29095T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_450207 MT270110
 2020-02-07 2020-03-28
 Germany SARS-CoV-2/human/DEU/BavPat10-ChVir1482/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6446A A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_451356
 2020-02-07 2020-05-24
 China hCoV-19/China/SC-PHCC1-035/2020
 C829T G26144T

EPI_ISL_455385
 2020-02-07 2020-05-29
 China hCoV-19/Wuhan/HB-WH4-193/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- C11050A AG14142- TG14865- C25624T

EPI_ISL_493421
 2020-02-07 2020-07-21
 Singapore hCoV-19/Singapore/661/2020
 ATTA1- C17373T AATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29805-

EPI_ISL_530004
 2020-02-07 2020-09-10
 Spain hCoV-19/Spain/MD-H12-73/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G A27307G ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_410486
 2020-02-08 2020-02-14
 France hCoV-19/France/RA739/2020
 ATG1605- AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_412983 NMDC60013098-01
 2020-02-08 2020-03-02
 China BetaCoV/Tianmen/HBCDC-HB-07/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTT1- A3175G G3179A C8782T C14422T C14585T G23405C T28144C C28315T T29680K AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_413809 CNA0013893
 2020-02-08 2020-03-09
 China Weifang/WFCDC0029/2020
 ATTAAAGGTTTAT1- C8782T G18686T T28144C C29095T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_414041
 2020-02-08 2020-03-11
 United Kingdom hCoV-19/England/200690245/2020
 ATG1605- C28253Y

EPI_ISL_414042
 2020-02-08 2020-03-11
 United Kingdom hCoV-19/England/200690300/2020
 ATG1605- A11002M

EPI_ISL_414044
 2020-02-08 2020-03-11
 United Kingdom hCoV-19/England/200690756/2020
 ATG1605- C6638Y G13507R

EPI_ISL_416363
 2020-02-08 2020-03-20
 China hCoV-19/Shanghai/SH0055/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C15324T C29303T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416382
 2020-02-08 2020-03-20
 China hCoV-19/Shanghai/SH0080/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- G1397A C2570T C9333T T11032C G11083T C12073T C17502T T28688C G29742T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416415 MT450924
 2020-02-08 2020-03-20
 Australia SARS-CoV-2/human/AUS/VIC07/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C8782T C10038T T28144C G28878A G29742A

EPI_ISL_417187
 2020-02-08 2020-03-24
 China hCoV-19/Hong Kong/HKPU29_0102/2020
 C9962T T13929C C14724T T21584G G26144T

EPI_ISL_417188
 2020-02-08 2020-03-24
 China hCoV-19/Hong Kong/HKPU30_2901/2020
 C9962T T13929C C14724T T21584G G26144T

EPI_ISL_421258
 2020-02-08 2020-04-07
 China hCoV-19/Shangrao/JX1974/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C7938G C11750T C21707T AAAAAAAAAAAA29892-

EPI_ISL_429089 CNA0013941
 2020-02-08 2020-04-23
 China Guangzhou/GZMU0037/2020
 C241T C3037T A23403G AAAAAAAAAAAA29892-

EPI_ISL_429090 CNA0013942
 2020-02-08 2020-04-23
 China Guangzhou/GZMU0039/2020
 C8782T T28144C AAAAAAAAAAAA29892-

EPI_ISL_429091 CNA0013943
 2020-02-08 2020-04-23
 China Guangzhou/GZMU0041/2020
 C8782T T28144C A29882C AAAAAAAAAAAA29892-

EPI_ISL_429092 CNA0013944
 2020-02-08 2020-04-23
 China Guangzhou/GZMU0045/2020
 C8782T T28144C AAAAAAAAAAAA29892-

EPI_ISL_429093 CNA0013945
 2020-02-08 2020-04-23
 China Guangzhou/GZMU0046/2020
 C8782T T28144C AAAAAAAAAAAA29892-

EPI_ISL_429094 CNA0013946
 2020-02-08 2020-04-23
 China Guangzhou/GZMU0049/2020
 C8782T C26447G T28144C T28250G C29095T

EPI_ISL_429095 CNA0013947
 2020-02-08 2020-04-23
 China Guangzhou/GZMU0050/2020
 ATT1GAC G8A TT10CC C8782T C26447G T28144C T28250G C29095T

EPI_ISL_430724
 2020-02-08 2020-04-27
 China hCoV-19/Beijing/BJ752/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C14198T C16293T T28144C C29095T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_435134
 2020-02-08 2020-05-03
 United Arab Emirates hCoV-19/United Arab Emirates/L4280/2020
 C29303T

EPI_ISL_450208 MT270111
 2020-02-08 2020-03-28
 Germany SARS-CoV-2/human/DEU/BavPat14-ChVir1483/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6446A A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_451076 EPI_ISL_451377
 2020-02-08 2020-05-23
 China hCoV-19/Sichuan/SC-WCH2-006/2020
 T28144C C29640T G29742A

EPI_ISL_451349
 2020-02-08 2020-05-24
 China hCoV-19/China/SC-PHCC1-028/2020
 CC18109-T

EPI_ISL_451350
 2020-02-08 2020-05-24
 China hCoV-19/China/SC-PHCC1-029/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- G1820A C27247T A27300-

EPI_ISL_451352
 2020-02-08 2020-05-24
 China hCoV-19/China/SC-PHCC1-031/2020
 C683T G16197T G16325- TG18987- T21836C

EPI_ISL_451367
 2020-02-08 2020-05-24
 China hCoV-19/China/SC-PHCC2-047/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- T13243C CC18109-T

EPI_ISL_451369
 2020-02-08 2020-05-24
 China hCoV-19/China/SC-PHCC2-049/2020
 G1820A G8013A C18267T C21711T TTT21980- GCTTTA22289- C23741T G28845A G28919A

EPI_ISL_451375
 2020-02-08 2020-05-24
 China hCoV-19/China/SC-WCH1-002/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- AAGATTTTC729- T13243C CC18109-T

EPI_ISL_452359
 2020-02-08 2020-05-27
 China hCoV-19/Beijing/DT-BJ02/2020
 G11405C T21146C G26144T

EPI_ISL_455791
 2020-02-08 2020-06-01
 Malaysia hCoV-19/Malaysia/IMR_WC413/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C1758T C10604T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_457733
 2020-02-08 2020-06-02
 Taiwan hCoV-19/Taiwan/TSGH-37/2020
 A1226C C14573T G18106T C29199T T29360G -29899AACCCCCAAAAAAAAAAAAAAAAAAACAACAAATTAAAAACAAAAAAAAAAAAAAATAAAAAATATAAAGGAGATAAAAATAATATT -29904CA

EPI_ISL_530005
 2020-02-08 2020-09-10
 Spain hCoV-19/Spain/MD-H12-75/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6040T C8683T C8782T G12661A C15738T C26088T G26152A T28144C ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_410537
 2020-02-09 2020-02-17
 Singapore hCoV-19/Singapore/6/2020
 ATTAAAGGTTTATACC1- G27147C TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_412116
 2020-02-09 2020-02-24
 United Kingdom hCoV-19/England/09c/2020
 A2480G C2558T C14805T G26144T

EPI_ISL_413864 NMDC60013031-01
 2020-02-09 2020-03-09
 China hCoV-19/Guangdong/GD2020246-P0028/2020
 C15324T C29303T

EPI_ISL_414527
 2020-02-09 2020-03-13
 China hCoV-19/Hong Kong/VM20002493-2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- T13929C A23717G G26144T G29239T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_416380
 2020-02-09 2020-03-20
 China hCoV-19/Shanghai/SH0077/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G2293T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416393
 2020-02-09 2020-03-20
 China hCoV-19/Shanghai/SH0101/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G2293T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416404
 2020-02-09 2020-03-20
 China hCoV-19/Shanghai/SH0119/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_417185
 2020-02-09 2020-03-24
 China hCoV-19/Hong Kong/HKPU28_3001/2020
 G26144T

EPI_ISL_417193
 2020-02-09 2020-03-24
 China hCoV-19/Hong Kong/HKPU32_0402/2020
 C9962T T13929C C14724T T21584G G21974T G26144T

EPI_ISL_417197
 2020-02-09 2020-03-24
 China hCoV-19/Hong Kong/HKPU34_3001/2020
 C9962T T13929C T21584G G21974T G26144T

EPI_ISL_418815
 2020-02-09 2020-03-31
 China hCoV-19/Hong Kong/HKPU36-0702/2020
 C9962T C12756T T13929C C14724T T21584G G26144T

EPI_ISL_426182
 2020-02-09 2020-04-15
 South Korea hCoV-19/Korea/KCDC2012/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACT1- T490A C1101T G3119A C8782T C24034T T26729C G28077C T28144C AAAAAAAAAAAAAAAA29888-

EPI_ISL_451348
 2020-02-09 2020-05-24
 China hCoV-19/China/SC-PHCC1-027/2020
 T3086C C8782T G11083T G17122A T17407C C21711T C25721T G27261A G27967T T28144C

EPI_ISL_451354
 2020-02-09 2020-05-24
 China hCoV-19/China/SC-PHCC1-033/2020
 T3086C C8782T G11083T T15393G G17122A G27261A G27967T T28144C

EPI_ISL_451371
 2020-02-09 2020-05-24
 China hCoV-19/China/SC-PHCC2-051/2020
 C8782T C19637T T28144C

EPI_ISL_454980
 2020-02-09 2020-05-29
 China hCoV-19/Wuhan/HB-WH5-239/2020
 

EPI_ISL_455460
 2020-02-09 2020-05-30
 China hCoV-19/Yichun/JX2325/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C8782T C25046T T28144C C29095T AAAAAAAAAAAA29892-

EPI_ISL_455792
 2020-02-09 2020-06-01
 Malaysia hCoV-19/Malaysia/IMR_WC458/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C1758T C10604T ATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29850-

EPI_ISL_462293
 2020-02-09 2020-06-08
 Singapore hCoV-19/Singapore/175/2020
 T3412W C9474Y C9603Y G17847R T18339Y C20099Y C21707T A21949M AAAAAAAAAAAA29892-

EPI_ISL_464168
 2020-02-09 2020-06-11
 United Kingdom hCoV-19/England/20072030304/2020
 A2480G C2558T G11083T C14805T G26144T A29478R

EPI_ISL_482680
 2020-02-09 2020-07-05
 Singapore hCoV-19/Singapore/320nan/2020
 G27147C

EPI_ISL_489998
 2020-02-09 2020-07-14
 Saudi Arabia hCoV-19/Saudi Arabia/509/2020
 C241T C829T C3037T G7067A C14408T C18264T C18877T A23403G G25563T C26735T

EPI_ISL_497966
 2020-02-09 2020-07-26
 South Korea hCoV-19/Korea/KCDC2065/2020
 A1G TA3- T490A C1101T G3119A G3661A C8782T C24034T T26729C G28077C T28144C AAAAAAAAAAAAAAA29889-

EPI_ISL_530006
 2020-02-09 2020-09-10
 Spain hCoV-19/Spain/MD-H12-76/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C9603T G11083T G26144T ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

GWHAORB01000001
 2020-02-09 2020-09-11
 China SARS-CoV-2/human/CHN/Beijing-P1.1/2020
 G26144T

MT755885
 2020-02-09 2020-07-14
 Saudi Arabia SARS-CoV-2/human/SAU/509/2020
 C241T C829T C3037T G7067A C14408T C18264T C18877T A23403G G25563T C26735T

NMDC60013280
 2020-02-09 2020-06-01
 China hCoV-19/Guangzhou/ID004/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T G11837T T28144C C29095T C29870A

EPI_ISL_411955 MT106053
 2020-02-10 2020-02-22
 United States 2019-nCoV/USA-CA8/2020
 A24325G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_412968 LC528232
 2020-02-10 2020-02-26
 Japan SARS-CoV-2/Hu/DP/Kng/19-020
 A1TTGCTTA T3G GG7AT TA13AT CT16- G11083T AA29884TT AAAA29888TTTT AA29893GT AAAAAAAA29896GTGC

EPI_ISL_412969 LC528233
 2020-02-10 2020-02-26
 Japan SARS-CoV-2/Hu/DP/Kng/19-027
 ATT1CCC G7ATGCTGTT G11083T C29635T A29876C AAA29878GTG A29883C AAAA29886TGCT AAA29891GGG AAAAAAAAA29895-

EPI_ISL_413753 CNA0013878
 2020-02-10 2020-03-09
 China Weifang/WFCDC0024/2020
 ATTAAAGGTTTA1- A5608G C7164T CTTTACTTG22281- AAAAAAAAA29895-

EPI_ISL_414528
 2020-02-10 2020-03-13
 China hCoV-19/Hong Kong/VM20002507-2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- T13929C G26144T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_418992
 2020-02-10 2020-04-01
 Singapore hCoV-19/Singapore/17/2020
 T21524G C21575T G26144T G29737S AAAAAAAAAAAA29892-

EPI_ISL_419214
 2020-02-10 2020-04-01
 China hCoV-19/Hong Kong/HKPU39-3001/2020
 C9962T T13929C C14724T T21584G G26144T

EPI_ISL_419215
 2020-02-10 2020-04-01
 China hCoV-19/Hong Kong/HKPU40-2801/2020
 C9962T T13929C C14724T T21584G G26144T

EPI_ISL_419216
 2020-02-10 2020-04-01
 China hCoV-19/Hong Kong/HKPU41-0802/2020
 C9962T T13929C C14724T T21584G G21974T G26144T

EPI_ISL_430741
 2020-02-10 2020-04-27
 China hCoV-19/Beijing/BJ782/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C14198T C16293T T28144C C29095T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_451388
 2020-02-10 2020-05-24
 China hCoV-19/China/SC-WCH4-286/2020
 

EPI_ISL_454930
 2020-02-10 2020-05-29
 China hCoV-19/Wuhan/HB-WH2-163/2020
 T18765C T25382C

EPI_ISL_454931
 2020-02-10 2020-05-29
 China hCoV-19/Wuhan/HB-WH2-164/2020
 C8529T C17690T T25382C C25611A

EPI_ISL_455374
 2020-02-10 2020-05-29
 China hCoV-19/Wuhan/HB-WH2-162/2020
 C8529T ATA17609- G18412- C22482T

EPI_ISL_455465
 2020-02-10 2020-05-30
 China hCoV-19/Fuzhou/JX2019/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C2570T A24454G G26144T AAAAAAAAAAAA29892-

EPI_ISL_489999
 2020-02-10 2020-07-14
 Saudi Arabia hCoV-19/Saudi Arabia/518/2020
 C241T C3037T A3790G C14408T C15342T C18877T A23403G G25543T G25563T C26735T

EPI_ISL_490000
 2020-02-10 2020-07-14
 Saudi Arabia hCoV-19/Saudi Arabia/523/2020
 C241T C829T C3037T G7067A G12793T C14408T C18264T C18877T A23403G G25563T C26735T

EPI_ISL_530007
 2020-02-10 2020-09-10
 Spain hCoV-19/Spain/MD-H12-77/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C5339T G7954T G11365T T13447G C14408T C22444T A23403G GGG28881AAC ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

MT755886
 2020-02-10 2020-07-14
 Saudi Arabia SARS-CoV-2/human/SAU/518/2020
 C241T C3037T A3790G C14408T C15342T C18877T A23403G G25543T G25563T C26735T

MT755887
 2020-02-10 2020-07-14
 Saudi Arabia SARS-CoV-2/human/SAU/523/2020
 C241T C829T C3037T G7067A G12793T C14408T C18264T C18877T A23403G G25563T C26735T

EPI_ISL_411956 MT106054
 2020-02-11 2020-02-22
 United States 2019-nCoV/USA-TX1/2020
 C8782T T18603C T18975A A19175C C27925T T28144C C29095T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_416402
 2020-02-11 2020-03-20
 China hCoV-19/Shanghai/SH0115/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C289T C8782T T28144C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416429
 2020-02-11 2020-03-21
 Vietnam hCoV-19/Vietnam/CM99/2020
 C8782T A9259G G21142T C24034T T26729C G28077C T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_419222
 2020-02-11 2020-04-01
 China hCoV-19/Hong Kong/HKPU48-0202/2020
 A22474G G23088A G23090T G26144T

EPI_ISL_451342
 2020-02-11 2020-05-24
 China hCoV-19/China/SC-NJ-093/2020
 C15720T CT27874TC CACG27879TC C27883T T28144C

EPI_ISL_452358
 2020-02-11 2020-05-27
 China hCoV-19/Beijing/DT-BJ01/2020
 

EPI_ISL_452361
 2020-02-11 2020-05-27
 China hCoV-19/Beijing/DT-BJ03/2020
 T8022G G21452A T28144C

EPI_ISL_454932
 2020-02-11 2020-05-29
 China hCoV-19/Wuhan/HB-WH2-166/2020
 T22777C G22793T G22857T

EPI_ISL_454933
 2020-02-11 2020-05-29
 China hCoV-19/Wuhan/HB-WH2-167/2020
 

EPI_ISL_454934
 2020-02-11 2020-05-29
 China hCoV-19/Wuhan/HB-WH2-168/2020
 C8529T

EPI_ISL_454935
 2020-02-11 2020-05-29
 China hCoV-19/Wuhan/HB-WH2-169/2020
 G26239A

EPI_ISL_454936
 2020-02-11 2020-05-29
 China hCoV-19/Wuhan/HB-WH3-170/2020
 G26558T

EPI_ISL_454937
 2020-02-11 2020-05-29
 China hCoV-19/Wuhan/HB-WH3-171/2020
 C22482T

EPI_ISL_455011
 2020-02-11 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM2-279/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- C3768T ATA3951- T13243C C16045T

EPI_ISL_455375
 2020-02-11 2020-05-29
 China hCoV-19/Wuhan/HB-WH2-165/2020
 G18412- T25382C

EPI_ISL_457687 CNA0013981
 2020-02-11 2020-06-02
 China Guangzhou/GZMU0074/2020
 C8782T T28144C AAAAAAAAAAAA29892-

EPI_ISL_457688 CNA0013982
 2020-02-11 2020-06-02
 China Guangzhou/GZMU0075/2020
 C8782T T28144C AAAAAAAAAAAA29892-

EPI_ISL_457689 CNA0013983
 2020-02-11 2020-06-02
 China Guangzhou/GZMU0077/2020
 C8782T T28144C AAAAAAAAAAAA29892-

EPI_ISL_457690 CNA0013984
 2020-02-11 2020-06-02
 China Guangzhou/GZMU0078/2020
 C8782T T28144C AAAAAAAAAAAA29892-

EPI_ISL_457691 CNA0013985
 2020-02-11 2020-06-02
 China Guangzhou/GZMU0079/2020
 G6819T C17373T C28854T G29527A A29878C AAAAAAAAAAAA29892-

EPI_ISL_530008
 2020-02-11 2020-09-10
 Spain hCoV-19/Spain/MD-H12-78/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11071C G11083T C24616T G26144T C29659T ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_414569
 2020-02-12 2020-03-13
 China hCoV-19/Hong Kong/VM20002582-2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- T13929C G25500A G26144T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_426187
 2020-02-12 2020-04-15
 South Korea hCoV-19/Korea/KCDC2014/2020
 ATTAAAGGTTTATACC1- T490A C1101T G3119A C8782T C24034T T26729C C26873T G28077C T28144C A29869G AAAAAAAAAAAAAAAA29888-

EPI_ISL_430444
 2020-02-12 2020-04-27
 Malaysia hCoV-19/Malaysia/IMR_WC627/2020
 ATTAAAGGTTTA1- C1758T C10604T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_451298
 2020-02-12 2020-05-24
 Italy hCoV-19/Italy/INMI1-B1/2020
 ATTAAAGGTTTATACCTTCCCAGG1- A2269T G11083T G26144T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_451355
 2020-02-12 2020-05-24
 China hCoV-19/China/SC-PHCC1-034/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- T28144C

EPI_ISL_451364
 2020-02-12 2020-05-24
 China hCoV-19/China/SC-PHCC2-044/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- TTAAAAT1362- C13019T T13243C C26333T C26340T

EPI_ISL_455386
 2020-02-12 2020-05-29
 China hCoV-19/Wuhan/HB-WH4-198/2020
 TG14865-

EPI_ISL_455467
 2020-02-12 2020-05-30
 China hCoV-19/Yichun/JX2424/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C6543T C8782T T28144C AAAAAAAAAAAA29892-

EPI_ISL_530009
 2020-02-12 2020-09-10
 Spain hCoV-19/Spain/MD-H12-80/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6726T G10072T C14408T C19160T A20268G A23403G G25630T G29734C ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_414380
 2020-02-13 2020-03-12
 Singapore hCoV-19/Singapore/14/2020
 C8782T ACTTGAACTGCAAGATCATAATGAAACTTGTCACGCCTAAACGAACATGAAATTTCTTGTTTTCTTAGGAATCATCACAACTGTAGCTGCATTTCACCAAGAATGTAGTTTACAGTCATGTACTCAACATCAACCATATGTAGTTGATGACCCGTGTCCTATTCACTTCTATTCTAAATGGTATATTAGAGTAGGAGCTAGAAAATCAGCACCTTTAATTGAATTGTGCGTGGATGAGGCTGGTTCTAAATCACCCATTCAGTACATCGATATCGGTAATTATACAGTTTCCTGTTTACCTTTTACAATTAATTGCCAGGAACCTAAATTGGGTAGTCTTGTAGTGCGTTGTTCGTTCTATGAAGACTTTTTAGAGTATCAT27848- TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_416399
 2020-02-13 2020-03-20
 China hCoV-19/Shanghai/SH0110/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C7239T T8916G C16887T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_419000
 2020-02-13 2020-04-01
 Singapore hCoV-19/Singapore/21/2020
 C8782T ACTTGAACTGCAAGATCATAATGAAACTTGTCACGCCTAAACGAACATGAAATTTCTTGTTTTCTTAGGAATCATCACAACTGTAGCTGCATTTCACCAAGAATGTAGTTTACAGTCATGTACTCAACATCAACCATATGTAGTTGATGACCCGTGTCCTATTCACTTCTATTCTAAATGGTATATTAGAGTAGGAGCTAGAAAATCAGCACCTTTAATTGAATTGTGCGTGGATGAGGCTGGTTCTAAATCACCCATTCAGTACATCGATATCGGTAATTATACAGTTTCCTGTTTACCTTTTACAATTAATTGCCAGGAACCTAAATTGGGTAGTCTTGTAGTGCGTTGTTCGTTCTATGAAGACTTTTTAGAGTATCAT27848- AAAAAAAAAAAA29892-

EPI_ISL_419224
 2020-02-13 2020-04-01
 China hCoV-19/Hong Kong/HKPU52-3101/2020
 G25500A G26144T

EPI_ISL_419226
 2020-02-13 2020-04-01
 China hCoV-19/Hong Kong/HKPU54-0302/2020
 C203T C1404T A4426G C15273T A22429G G26144T

EPI_ISL_451362
 2020-02-13 2020-05-24
 China hCoV-19/China/SC-PHCC2-042/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- A1430G C6318T G16535T CC18109-T TG18987-

EPI_ISL_451391
 2020-02-13 2020-05-24
 China hCoV-19/China/SC-WCH4-289/2020
 A16824G

EPI_ISL_454417 MT510728
 2020-02-13 2020-05-25
 China SARS-CoV-2/human/CHN/SARS-CoV-2-MZ01 Meizhou_MZ01/2020
 C3817T C8782T T15983A G25598T T28144C

EPI_ISL_454999
 2020-02-13 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM2-264/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- C11897T T13243C T14684C

EPI_ISL_464169
 2020-02-13 2020-06-11
 United Kingdom hCoV-19/England/20078003804/2020
 A2480G C2558T G11083T C14805T G26144T A29478R

EPI_ISL_479850
 2020-02-13 2020-07-01
 Japan hCoV-19/Japan/PG-0114/2020
 ATTAAAGGTTT1- T8323C G11083T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_490001
 2020-02-13 2020-07-14
 Saudi Arabia hCoV-19/Saudi Arabia/545/2020
 C241T C3037T C14408T C18877T C22444T A23403G A23503G G25563T C26735T

EPI_ISL_490002
 2020-02-13 2020-07-14
 Saudi Arabia hCoV-19/Saudi Arabia/553/2020
 C241T G713T C897T C3037T T7386C A7487G C14408T C18555T C18877T A23403G G25563T C26735T

EPI_ISL_530010
 2020-02-13 2020-09-10
 Spain hCoV-19/Spain/MD-H12-81/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10747T C14408T A20268G A23403G G29734C ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

MT755888
 2020-02-13 2020-07-14
 Saudi Arabia SARS-CoV-2/human/SAU/545/2020
 C241T C3037T C14408T C18877T C22444T A23403G A23503G G25563T C26735T

MT755889
 2020-02-13 2020-07-14
 Saudi Arabia SARS-CoV-2/human/SAU/553/2020
 C241T G713T C897T C3037T T7386C A7487G C14408T C18555T C18877T A23403G G25563T C26735T

EPI_ISL_416394
 2020-02-14 2020-03-20
 China hCoV-19/Shanghai/SH0102/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G2293T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_418998
 2020-02-14 2020-04-01
 Singapore hCoV-19/Singapore/14Clin/2020
 C8782T ACTTGAACTGCAAGATCATAATGAAACTTGTCACGCCTAAACGAACATGAAATTTCTTGTTTTCTTAGGAATCATCACAACTGTAGCTGCATTTCACCAAGAATGTAGTTTACAGTCATGTACTCAACATCAACCATATGTAGTTGATGACCCGTGTCCTATTCACTTCTATTCTAAATGGTATATTAGAGTAGGAGCTAGAAAATCAGCACCTTTAATTGAATTGTGCGTGGATGAGGCTGGTTCTAAATCACCCATTCAGTACATCGATATCGGTAATTATACAGTTTCCTGTTTACCTTTTACAATTAATTGCCAGGAACCTAAATTGGGTAGTCTTGTAGTGCGTTGTTCGTTCTATGAAGACTTTTTAGAGTATCAT27848- AAAAAAAAAAAA29892-

EPI_ISL_420889 LC534418
 2020-02-14 2020-03-19
 Japan SARS-CoV-2/Hu/DP/Kng/19-031
 ATTA1- C7105T G11083T G15418T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_451368
 2020-02-14 2020-05-24
 China hCoV-19/China/SC-PHCC2-048/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- C8782T C19637T T28144C

EPI_ISL_455000
 2020-02-14 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM2-265/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- C11897T T13243C T14684C

EPI_ISL_457692 CNA0013986
 2020-02-14 2020-06-02
 China Guangzhou/GZMU0081/2020
 C8782T T28144C AAAAAAAAAAAA29892-

EPI_ISL_457693 CNA0013987
 2020-02-14 2020-06-02
 China Guangzhou/GZMU0083/2020
 C8782T T28144C AAAAAAAAAAAA29892-

EPI_ISL_530011
 2020-02-14 2020-09-10
 Spain hCoV-19/Spain/MD-H12-82/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7945T C14408T A20268G A23403G G26918T ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_416406
 2020-02-15 2020-03-20
 China hCoV-19/Shanghai/SH0125/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1397A C5869T C9474T G11083T C17502T G19518T C25207T T28688C G29742T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416407
 2020-02-15 2020-03-20
 China hCoV-19/Shanghai/SH0126/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G1397A C5869T G11083T C17502T G19518T C25207T T28688C G29742T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416565 LC570961
 2020-02-15 2020-03-23
 Japan DP0005
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- G11083T C18656T C29635T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_416566 LC570962
 2020-02-15 2020-03-23
 Japan DP0027
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- G11083T A12964G A29324G AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_416567 LC570963
 2020-02-15 2020-03-23
 Japan DP0037
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- G11083T G11410A G15907A TA29564- TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_416569 LC570967
 2020-02-15 2020-03-23
 Japan DP0059
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G11083T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_416570 LC570968
 2020-02-15 2020-03-23
 Japan DP0065
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C254T G11083T G22104T G29736T G29751C GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_416571 LC570969
 2020-02-15 2020-03-23
 Japan DP0077
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- G4127A G11083T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_416572 LC570970
 2020-02-15 2020-03-23
 Japan DP0078
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- G11083T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_416573 LC570971
 2020-02-15 2020-03-23
 Japan DP0104
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- G11083T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_416574 LC570972
 2020-02-15 2020-03-23
 Japan DP0107
 ATT1- G11083T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_416575 LC570973
 2020-02-15 2020-03-23
 Japan DP0121
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- G11083T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_416576 LC570974
 2020-02-15 2020-03-23
 Japan DP0133
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- G11083T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_416577 LC570975
 2020-02-15 2020-03-23
 Japan DP0134
 ATT1- G11083T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_416578 LC570976
 2020-02-15 2020-03-23
 Japan DP0152
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C9474T G11083T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_416579 LC570977
 2020-02-15 2020-03-23
 Japan DP0158
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- T8004C G11083T A21917G AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_416580 LC570978
 2020-02-15 2020-03-23
 Japan DP0184
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- G11083T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_416581 LC570979
 2020-02-15 2020-03-23
 Japan DP0190
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- T8323C G11083T C25658T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_416582 LC570980
 2020-02-15 2020-03-23
 Japan DP0191
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- A3854G G11083T C29635T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_416583 LC570981
 2020-02-15 2020-03-23
 Japan DP0196
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C5284T G11083T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_416584 LC570982
 2020-02-15 2020-03-23
 Japan DP0200
 ATT1- A3132G G11083T G11410A AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_451393
 2020-02-15 2020-05-24
 China hCoV-19/China/SC-WCH4-291/2020
 A16824G

EPI_ISL_454418 MT510727
 2020-02-15 2020-05-25
 China SARS-CoV-2/human/CHN/SARS-CoV-2-MZ02 Meizhou_MZ02/2020
 G2203T C2701A C3817T C8782T T15983A T28144C

EPI_ISL_455003
 2020-02-15 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM2-268/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- T4873C A4992C C11897T T13243C T14684C A26098T

EPI_ISL_479824
 2020-02-15 2020-07-01
 Japan hCoV-19/Japan/PG-0066/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C11752T C19170A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480042
 2020-02-15 2020-07-01
 Japan hCoV-19/Japan/PG-0372/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- G3179A C6982T C8782T T28144C TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_530012
 2020-02-15 2020-09-10
 Spain hCoV-19/Spain/MD-H12-83/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7945T C14408T A20268G G21296A A23403G G26918T ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_416585 LC570983
 2020-02-16 2020-03-23
 Japan DP0236
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C335T G11083T G29736T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416586 LC570984
 2020-02-16 2020-03-23
 Japan DP0274
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- G11083T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_416587 LC570985
 2020-02-16 2020-03-23
 Japan DP0278
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T A15246G C29635T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_416588 LC570986
 2020-02-16 2020-03-23
 Japan DP0286
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- TGGTCATGTTATGGT508- G11083T C29635T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_416589 LC570987
 2020-02-16 2020-03-23
 Japan DP0287
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- G11083T G11310T A24819G G29674T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_416590 LC570988
 2020-02-16 2020-03-23
 Japan DP0289
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- G11083T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_416591 LC570989
 2020-02-16 2020-03-23
 Japan DP0290
 ATT1- G11083T T24436C AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_416592 LC570990
 2020-02-16 2020-03-23
 Japan DP0294
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- G11083T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416593 LC570991
 2020-02-16 2020-03-23
 Japan DP0311
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G4127A G11083T TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_416594 LC570992
 2020-02-16 2020-03-23
 Japan DP0319
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_416595 LC570993
 2020-02-16 2020-03-23
 Japan DP0328
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- G11083T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_416596 LC570994
 2020-02-16 2020-03-23
 Japan DP0344
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_416597 LC570995
 2020-02-16 2020-03-23
 Japan DP0346
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G11083T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_416598 LC570996
 2020-02-16 2020-03-23
 Japan DP0357
 ATTAAAGG1- G11083T C29635T ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_416599 LC570997
 2020-02-16 2020-03-23
 Japan DP0361
 ATTAAAGGTTTATACCTTC1- G11083T G11410A ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_416600 LC570998
 2020-02-16 2020-03-23
 Japan DP0438
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- G11083T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_416601 LC570999
 2020-02-16 2020-03-23
 Japan DP0457
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- G4201T G11083T C25000T G25244T GAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29864-

EPI_ISL_416603 LC571002
 2020-02-16 2020-03-23
 Japan DP0464
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- G11083T C18656T C29635T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_416604 LC571003
 2020-02-16 2020-03-23
 Japan DP0476
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- G11083T C21575T C29592T C29635T TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_416605 LC571004
 2020-02-16 2020-03-23
 Japan DP0481
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- T973C G9141A G11083T G26062T TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_416606 LC571005
 2020-02-16 2020-03-23
 Japan DP0482
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- G11083T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_422429
 2020-02-16 2020-04-10
 Singapore hCoV-19/Singapore/36/2020
 ATTAAA1- G27147C T29244K CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_428822
 2020-02-16 2020-04-22
 Singapore hCoV-19/Singapore/43/2020
 ATTAAA1- C8782T G14414K ACTTGAACTGCAAGATCATAATGAAACTTGTCACGCCTAAACGAACATGAAATTTCTTGTTTTCTTAGGAATCATCACAACTGTAGCTGCATTTCACCAAGAATGTAGTTTACAGTCATGTACTCAACATCAACCATATGTAGTTGATGACCCGTGTCCTATTCACTTCTATTCTAAATGGTATATTAGAGTAGGAGCTAGAAAATCAGCACCTTTAATTGAATTGTGCGTGGATGAGGCTGGTTCTAAATCACCCATTCAGTACATCGATATCGGTAATTATACAGTTTCCTGTTTACCTTTTACAATTAATTGCCAGGAACCTAAATTGGGTAGTCTTGTAGTGCGTTGTTCGTTCTATGAAGACTTTTTAGAGTATCAT27848- G28378K AAAAAAAAAAAA29892-

EPI_ISL_454749
 2020-02-16 2020-05-29
 Japan hCoV-19/Japan/DP0321/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_464175
 2020-02-16 2020-06-11
 United Kingdom hCoV-19/England/20080000104/2020
 A2480G C2558T G11083T C14805T A23999G G26144T

EPI_ISL_466615
 2020-02-16 2020-06-11
 United Kingdom hCoV-19/England/20168037604/2020
 C241T C3037T C14408T A23223G A23403G C25587T T26483C GGG28881AAC

EPI_ISL_477170
 2020-02-16 2020-06-29
 Singapore hCoV-19/Singapore/470/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_490003
 2020-02-16 2020-07-14
 Saudi Arabia hCoV-19/Saudi Arabia/562/2020
 C241T T586A C3037T C14408T C18877T C22444T A23403G G25563T C26735T C28333T C28854T

EPI_ISL_530013
 2020-02-16 2020-09-10
 Spain hCoV-19/Spain/MD-H12-84/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1426T C3037T C6794G C14408T A20268G A23403G T25663C G29734C ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_538435
 2020-02-16 2020-09-17
 Singapore hCoV-19/Singapore/36nan/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G27147C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT755890
 2020-02-16 2020-07-14
 Saudi Arabia SARS-CoV-2/human/SAU/562/2020
 C241T T586A C3037T C14408T C18877T C22444T A23403G G25563T C26735T C28333T C28854T

EPI_ISL_413606 MT159717
 2020-02-17 2020-03-09
 United States SARS-CoV-2/human/USA/CruiseA-1/2020
 C3099T G11083T G28378T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_413612 MT159705
 2020-02-17 2020-03-09
 United States SARS-CoV-2/human/USA/CruiseA-7/2020
 C3738T G11083T G11410A C26326T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_413613 MT159706
 2020-02-17 2020-03-09
 United States SARS-CoV-2/human/USA/CruiseA-8/2020
 C9474T G11083T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_413614 MT159710
 2020-02-17 2020-03-09
 United States SARS-CoV-2/human/USA/CruiseA-9/2020
 G11083T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_413615 MT159707
 2020-02-17 2020-03-09
 United States SARS-CoV-2/human/USA/CruiseA-10/2020
 G3259T G11083T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_413616 MT159708
 2020-02-17 2020-03-09
 United States SARS-CoV-2/human/USA/CruiseA-11/2020
 C10036T G11083T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_414378
 2020-02-17 2020-03-12
 Singapore hCoV-19/Singapore/12/2020
 C8782T T24011C C25568A ACTTGAACTGCAAGATCATAATGAAACTTGTCACGCCTAAACGAACATGAAATTTCTTGTTTTCTTAGGAATCATCACAACTGTAGCTGCATTTCACCAAGAATGTAGTTTACAGTCATGTACTCAACATCAACCATATGTAGTTGATGACCCGTGTCCTATTCACTTCTATTCTAAATGGTATATTAGAGTAGGAGCTAGAAAATCAGCACCTTTAATTGAATTGTGCGTGGATGAGGCTGGTTCTAAATCACCCATTCAGTACATCGATATCGGTAATTATACAGTTTCCTGTTTACCTTTTACAATTAATTGCCAGGAACCTAAATTGGGTAGTCTTGTAGTGCGTTGTTCGTTCTATGAAGACTTTTTAGAGTATCAT27848- C29741T TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_414483 MT184911
 2020-02-17 2020-03-12
 United States 2019-nCoV/USA-CruiseA-24/2020
 C1063Y C3099T C10083Y C10507T G11083T G15193S G15586K C15810Y C28253Y G28378T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_414484 MT184912
 2020-02-17 2020-03-12
 United States 2019-nCoV/USA-CruiseA-25/2020
 G11083T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_416607 LC571006
 2020-02-17 2020-03-23
 Japan DP0543
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- A5845T G11083T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_416608 LC571007
 2020-02-17 2020-03-23
 Japan DP0544
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- A5845T G11083T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_416609 LC571008
 2020-02-17 2020-03-23
 Japan DP0568
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAG1- G11083T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_416610 LC571009
 2020-02-17 2020-03-23
 Japan DP0588
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- G11083T C29635T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_416611 LC571010
 2020-02-17 2020-03-23
 Japan DP0644
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- G11083T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_416612 LC571011
 2020-02-17 2020-03-23
 Japan DP0645
 ATTAAAGGTTTATACCTTCCCAGGT1- G11083T G27282A AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_416613 LC571012
 2020-02-17 2020-03-23
 Japan DP0654
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- G11083T C18656T C20762T C24797A C29463T C29635T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_416614 LC571013
 2020-02-17 2020-03-23
 Japan DP0687
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- G11083T G20709T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_416617 LC571019
 2020-02-17 2020-03-23
 Japan DP0699
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- G11083T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_416619 LC571022
 2020-02-17 2020-03-23
 Japan DP0703
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- G11083T C18656T C29635T TGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29691-

EPI_ISL_416620 LC571023
 2020-02-17 2020-03-23
 Japan DP0724
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- G11083T G27214T AATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29818-

EPI_ISL_416621 LC571024
 2020-02-17 2020-03-23
 Japan DP0743
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- G11083T G29227T TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_416622 LC571025
 2020-02-17 2020-03-23
 Japan DP0752
 ATTA1- C4158T G11083T GAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29864-

EPI_ISL_416624 LC571030
 2020-02-17 2020-03-23
 Japan DP0764
 ATT1- G11083T C18656T C29635T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_416625 LC571031
 2020-02-17 2020-03-23
 Japan DP0765
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGAT1- C9223T G11083T C18656T C29635T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_416627 LC571034
 2020-02-17 2020-03-23
 Japan DP0785
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- G11083T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_416628 LC571035
 2020-02-17 2020-03-23
 Japan DP0786
 ATTAAAGGTTTATACCTTCCCAGGTA1- G11083T ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_416629 LC571036
 2020-02-17 2020-03-23
 Japan DP0802
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- G11083T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_416630 LC571037
 2020-02-17 2020-03-23
 Japan DP0803
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACT1- G4162T G11083T TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_416631 LC571038
 2020-02-17 2020-03-23
 Japan DP0804
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- G11083T TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_416632 LC571039
 2020-02-17 2020-03-23
 Japan DP0827
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G11083T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_416633 LC571040
 2020-02-17 2020-03-23
 Japan DP0880
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- G11083T C27804T AATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29818-

EPI_ISL_416634 LC571041
 2020-02-17 2020-03-23
 Japan DP0890
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- G11083T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_419228
 2020-02-17 2020-04-01
 China hCoV-19/Hong Kong/HKPU60-0802/2020
 A5536G

EPI_ISL_428462 NMDC60013125-01
 2020-02-17 2020-04-21
 China hCoV-19/Guangdong/20SF4047/2020
 C8782T C17502T T28144C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_454974
 2020-02-17 2020-05-29
 China hCoV-19/Wuhan/HB-WH5-231/2020
 T490A T26729C G28077C T28144C

EPI_ISL_455002
 2020-02-17 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM2-267/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- T13243C T14684C

EPI_ISL_455006
 2020-02-17 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM2-271/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- T13243C T14684C

EPI_ISL_457694 CNA0013988
 2020-02-17 2020-06-02
 China Guangzhou/GZMU0092/2020
 G6819T C17373T C28854T G29527A AAAAAAAAAAAA29892-

EPI_ISL_457695 CNA0013989
 2020-02-17 2020-06-02
 China Guangzhou/GZMU0095/2020
 C8782T T28144C AAAAAAAAAAAA29892-

EPI_ISL_479851
 2020-02-17 2020-07-01
 Japan hCoV-19/Japan/PG-0115/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479863
 2020-02-17 2020-07-01
 Japan hCoV-19/Japan/PG-0140/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- A3132G G11083T G11410A ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480030
 2020-02-17 2020-07-01
 Japan hCoV-19/Japan/PG-0359/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACT1- G11083T C18656T C29635T TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_490004
 2020-02-17 2020-07-14
 Saudi Arabia hCoV-19/Saudi Arabia/578/2020
 C241T C3037T C14408T C18877T C22444T A23403G G25563T C26735T C27527T C28854T C29421T

EPI_ISL_497961
 2020-02-17 2020-07-26
 South Korea hCoV-19/Korea/KCDC2060/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCA1- G5572T G11083T C14805T G26144T A29869G AAAAAAAAAAAAAAAA29888-

EPI_ISL_530014
 2020-02-17 2020-09-10
 Spain hCoV-19/Spain/MD-H12-85/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9474T C14408T A20268G A23403G C29218T G29734C ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

MT755891
 2020-02-17 2020-07-14
 Saudi Arabia SARS-CoV-2/human/SAU/578/2020
 C241T C3037T C14408T C18877T C22444T A23403G G25563T C26735T C27527T C28854T C29421T

EPI_ISL_413607 MT159718
 2020-02-18 2020-03-09
 United States SARS-CoV-2/human/USA/CruiseA-2/2020
 G11083T C28409T G29736T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_413608 MT159719
 2020-02-18 2020-03-09
 United States SARS-CoV-2/human/USA/CruiseA-3/2020
 G11083T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_413620 MT159713
 2020-02-18 2020-03-09
 United States SARS-CoV-2/human/USA/CruiseA-15/2020
 G11083T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_413621 MT159714
 2020-02-18 2020-03-09
 United States SARS-CoV-2/human/USA/CruiseA-16/2020
 G11083T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_414379
 2020-02-18 2020-03-12
 Singapore hCoV-19/Singapore/13/2020
 A1- C8782T T17723C ACTTGAACTGCAAGATCATAATGAAACTTGTCACGCCTAAACGAACATGAAATTTCTTGTTTTCTTAGGAATCATCACAACTGTAGCTGCATTTCACCAAGAATGTAGTTTACAGTCATGTACTCAACATCAACCATATGTAGTTGATGACCCGTGTCCTATTCACTTCTATTCTAAATGGTATATTAGAGTAGGAGCTAGAAAATCAGCACCTTTAATTGAATTGTGCGTGGATGAGGCTGGTTCTAAATCACCCATTCAGTACATCGATATCGGTAATTATACAGTTTCCTGTTTACCTTTTACAATTAATTGCCAGGAACCTAAATTGGGTAGTCTTGTAGTGCGTTGTTCGTTCTATGAAGACTTTTTAGAGTATCAT27848- C28868T TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_414479 MT184907
 2020-02-18 2020-03-12
 United States SARS-CoV-2/human/USA/CruiseA-19/2020
 G11083T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_414482 MT184910
 2020-02-18 2020-03-12
 United States 2019-nCoV/USA-CruiseA-23/2020
 C254T C1911Y T9157C G11083T G22104T G29736T G29751C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_427810
 2020-02-18 2020-04-19
 South Korea hCoV-19/Korea/KCDC2016/2020
 ATTAAAGGTT1- G174T A2406G G5572T G11083T C14805T G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_427811
 2020-02-18 2020-04-19
 South Korea hCoV-19/Korea/KCDC2017/2020
 ATTA1- G5572T G11083T C14805T T15399C G26144T

EPI_ISL_427813
 2020-02-18 2020-04-19
 South Korea hCoV-19/Korea/KCDC2019/2020
 ATTA1- G5572T G11083T C14805T G26144T

EPI_ISL_471425
 2020-02-18 2020-06-21
 South Korea hCoV-19/Korea/KCDC2020/2020
 G5572T G11083T C14805T G26144T

EPI_ISL_471426
 2020-02-18 2020-06-21
 South Korea hCoV-19/Korea/KCDC2021/2020
 C3411T G5572T G11083T C13551T C14805T G26144T

EPI_ISL_471438
 2020-02-18 2020-06-21
 South Korea hCoV-19/Korea/KCDC2022/2020
 A1- G5572T G11083T C14805T G26144T

EPI_ISL_479797
 2020-02-18 2020-07-01
 Japan hCoV-19/Japan/PG-0010/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C6151T C11752T C12708T C23191T G24410T TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_479798
 2020-02-18 2020-07-01
 Japan hCoV-19/Japan/PG-0011/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C6151T C11752T C12708T C23191T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_490005
 2020-02-18 2020-07-14
 Saudi Arabia hCoV-19/Saudi Arabia/583/2020
 C241T C3037T A9102G C14408T C18877T A23403G G25563T C26735T C29250T

EPI_ISL_490006
 2020-02-18 2020-07-14
 Saudi Arabia hCoV-19/Saudi Arabia/596/2020
 C241T C3037T C14408T C18877T C22444T A23403G A23503G G25563T C26735T

EPI_ISL_493414
 2020-02-18 2020-07-21
 Singapore hCoV-19/Singapore/654/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- G27147C G29798T AAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29812-

EPI_ISL_530015
 2020-02-18 2020-09-10
 Spain hCoV-19/Spain/MD-H12-87/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2724T C3037T A4307G C14408T C18117T A20268G A23403G C28854T ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

MT755892
 2020-02-18 2020-07-14
 Saudi Arabia SARS-CoV-2/human/SAU/583/2020
 C241T C3037T A9102G C14408T C18877T A23403G G25563T C26735T C29250T

MT755893
 2020-02-18 2020-07-14
 Saudi Arabia SARS-CoV-2/human/SAU/596/2020
 C241T C3037T C14408T C18877T C22444T A23403G A23503G G25563T C26735T

EPI_ISL_419231
 2020-02-19 2020-04-01
 China hCoV-19/Hong Kong/HKPU63-1402/2020
 G22309T G22936T

EPI_ISL_419232
 2020-02-19 2020-04-01
 China hCoV-19/Hong Kong/HKPU64-1202/2020
 G1149T G5539A C9962T G11083T C14724T T21584G G26144T

EPI_ISL_427812
 2020-02-19 2020-04-19
 South Korea hCoV-19/Korea/KCDC2018/2020
 ATTAAAGGTTT1- T4402C G5062T C8782T T28144C

EPI_ISL_451318
 2020-02-19 2020-05-24
 China hCoV-19/China/SC-LZ-079/2020
 C18060T T28144C

EPI_ISL_454952
 2020-02-19 2020-05-29
 China hCoV-19/Wuhan/HB-WH4-200/2020
 T12706A T28144C

EPI_ISL_471439
 2020-02-19 2020-06-21
 South Korea hCoV-19/Korea/KCDC2023/2020
 ATTAA1- T3142C G5572T G11083T C14805T G26144T

EPI_ISL_471440
 2020-02-19 2020-06-21
 South Korea hCoV-19/Korea/KCDC2024/2020
 A1- T921A G5572T G11083T C14805T C15216T G26144T AAAAAAAA29896-

EPI_ISL_471441
 2020-02-19 2020-06-21
 South Korea hCoV-19/Korea/KCDC2025/2020
 ATTAAAGGTTTA1- T693C G5572T G11083T C14805T G26144T

EPI_ISL_471442
 2020-02-19 2020-06-21
 South Korea hCoV-19/Korea/KCDC2026/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- G5572T G11083T C14805T G26144T

EPI_ISL_471443
 2020-02-19 2020-06-21
 South Korea hCoV-19/Korea/KCDC2027/2020
 G5572T G11083T C14805T G26144T G29717A

EPI_ISL_471446
 2020-02-19 2020-06-21
 South Korea hCoV-19/Korea/KCDC2040/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- G5572T G11083T C14805T C21575T G26144T

EPI_ISL_471447
 2020-02-19 2020-06-21
 South Korea hCoV-19/Korea/KCDC2041/2020
 ATTAAAGGTTT1- G5572T G11083T C14805T G26144T

EPI_ISL_471448
 2020-02-19 2020-06-21
 South Korea hCoV-19/Korea/KCDC2042/2020
 AT1- G5572T C11074T G11083T C12049T C14805T A17457R T25219C G26144T

EPI_ISL_471449
 2020-02-19 2020-06-21
 South Korea hCoV-19/Korea/KCDC2043/2020
 G5572T G11083T C14805T G26144T

EPI_ISL_471450
 2020-02-19 2020-06-21
 South Korea hCoV-19/Korea/KCDC2044/2020
 ATTA1- G5572T C11074T G11083T C12049T C14805T G26144T

EPI_ISL_476795
 2020-02-19 2020-06-26
 Singapore hCoV-19/Singapore/469/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480031
 2020-02-19 2020-07-01
 Japan hCoV-19/Japan/PG-0361/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- G9141A G11083T G26062T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_497960
 2020-02-19 2020-07-26
 South Korea hCoV-19/Korea/KCDC2039/2020
 G5572T G11083T C14805T G26144T

EPI_ISL_497968
 2020-02-19 2020-07-26
 South Korea hCoV-19/Korea/KCDC2067/2020
 G5572T G11083T C14805T G21778A T22928C C23917T G26144T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_497969
 2020-02-19 2020-07-26
 South Korea hCoV-19/Korea/KCDC2068/2020
 ATTAAAGGTTT1- T3142C G5572T G11083T C14805T G26144T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_412973
 2020-02-20 2020-03-01
 Italy hCoV-19/Italy/CDG1/2020
 C241T C3037T C14408T A23403G

EPI_ISL_413456 MT598633
 2020-02-20 2020-03-05
 United States SARS-CoV-2/human/USA/WA-S2/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_413459
 2020-02-20 2020-03-05
 Japan hCoV-19/Japan/TK-20-31-3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAG1- G11083T C29635T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_413617 MT159709
 2020-02-20 2020-03-09
 United States SARS-CoV-2/human/USA/CruiseA-12/2020
 G11083T C29635T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_413618 MT159711
 2020-02-20 2020-03-09
 United States SARS-CoV-2/human/USA/CruiseA-13/2020
 G11083T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418325
 2020-02-20 2020-02-20
 Canada hCoV-19/Canada/ON_PHL5472/2020
 A1- G1397A A2832G G11083T T28688C G29742T AGTGTAC29756- AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_451347
 2020-02-20 2020-05-24
 China hCoV-19/China/SC-PHCC1-026/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- TGCAGCTTTTGCTACTGCTCAAGAAGCTTATGAGCAGGCTGTTGCTAATGGTGATTCTGAAGTTGTTCTTAAAAAGTT12127- C23895A T28144C G28878A

EPI_ISL_454965
 2020-02-20 2020-05-29
 China hCoV-19/Wuhan/HB-WH5-220/2020
 C8055T C8266T C18329T C22006T C22858T C23298A

EPI_ISL_457696 CNA0013990
 2020-02-20 2020-06-02
 China Guangzhou/GZMU0099/2020
 C8782T T28144C AAAAAAAAAAAA29892-

EPI_ISL_457697 CNA0013991
 2020-02-20 2020-06-02
 China Guangzhou/GZMU0101/2020
 T3160C G6819T C17373T C21711T G29527A AAAAAAAAAAAA29892-

EPI_ISL_471444
 2020-02-20 2020-06-21
 South Korea hCoV-19/Korea/KCDC2028/2020
 ATTAAAGGTTTA1- G5572T G11083T C14805T G26144T

EPI_ISL_471445
 2020-02-20 2020-06-21
 South Korea hCoV-19/Korea/KCDC2029/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTC1- C1342A G11083T C14805T G26144T C26681T AAAAAAAAAAAAAAAA29888-

EPI_ISL_471451
 2020-02-20 2020-06-21
 South Korea hCoV-19/Korea/KCDC2045/2020
 ATTAAAGGTTTATAC1- G5572T A9889G G11083T C14805T G26144T

EPI_ISL_471453
 2020-02-20 2020-06-21
 South Korea hCoV-19/Korea/KCDC2047/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCAC1- T490A C1101T G3119A C8782T C24034T T26729C G28077C T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481376
 2020-02-20 2020-07-03
 South Korea hCoV-19/Korea/KCDC2056/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C176T G5572T G11083T C14805T C19983T G26144T

EPI_ISL_490007
 2020-02-20 2020-07-14
 Saudi Arabia hCoV-19/Saudi Arabia/610/2020
 C241T C3037T C14408T C18877T A23403G G25563T C26735T C27527T C28854T

EPI_ISL_497951
 2020-02-20 2020-07-26
 South Korea hCoV-19/Korea/KCDC2030/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCAC1- A118G G11083T C14805T G26144T C26681T ACAAAAAAAAAAAAAA29869-

EPI_ISL_497953
 2020-02-20 2020-07-26
 South Korea hCoV-19/Korea/KCDC2032/2020
 G11083T C14805T A23512G C25416T G26144T C26681T

EPI_ISL_497954
 2020-02-20 2020-07-26
 South Korea hCoV-19/Korea/KCDC2033/2020
 G11083T C14805T G26144T C26681T

EPI_ISL_497955
 2020-02-20 2020-07-26
 South Korea hCoV-19/Korea/KCDC2034/2020
 A1C G11083T C14805T T21769C G26144T C26681T

EPI_ISL_497956
 2020-02-20 2020-07-26
 South Korea hCoV-19/Korea/KCDC2035/2020
 ATTA1- G11083T C14805T G26144T C26681T G27556T

EPI_ISL_497957
 2020-02-20 2020-07-26
 South Korea hCoV-19/Korea/KCDC2036/2020
 ATTA1- G11083T C14805T G26144T C26681T

EPI_ISL_497958
 2020-02-20 2020-07-26
 South Korea hCoV-19/Korea/KCDC2037/2020
 AT1- G11083T C14805T G26144T C26681T

EPI_ISL_497959
 2020-02-20 2020-07-26
 South Korea hCoV-19/Korea/KCDC2038/2020
 A1- G11083T C14805T G26144T C26681T

EPI_ISL_497967
 2020-02-20 2020-07-26
 South Korea hCoV-19/Korea/KCDC2066/2020
 ATTAAAGGTTTATAC1- G5572T G11083T C14805T G26144T ACAAAAAAAAAAAAAA29869-

EPI_ISL_497971
 2020-02-20 2020-07-26
 South Korea hCoV-19/Korea/KCDC2070/2020
 G5572T G11083T C14805T G22955T G26144T T29851A CTTAGGAGAATG29857-

EPI_ISL_497972
 2020-02-20 2020-07-26
 South Korea hCoV-19/Korea/KCDC2071/2020
 ATTAAAGGTTTATAC1- G5572T G11083T C14805T G26144T ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_497973
 2020-02-20 2020-07-26
 South Korea hCoV-19/Korea/KCDC2072/2020
 ATTAAA1- G5572T G11083T C14805T G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_497974
 2020-02-20 2020-07-26
 South Korea hCoV-19/Korea/KCDC2073/2020
 T921A G5572T G11083T C14805T G26144T ATTTTAATAGCTTCTTAGGAGAATGAC29844-

EPI_ISL_530016
 2020-02-20 2020-09-10
 Spain hCoV-19/Spain/MD-H12-89/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7122C C14408T T17126C A20268G A23403G ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_538436
 2020-02-20 2020-09-17
 Singapore hCoV-19/Singapore/913/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C2325A T21524G C21575T C24784T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540993
 2020-02-20 2020-09-22
 South korea hCoV-19/South Korea/IHC597/2020
 ATTAAAGGTTTATACC1- G5572T G11083T C14805T G26144T AAAAAAAAAAAAAAAA29888-

EPI_ISL_540994
 2020-02-20 2020-09-22
 South korea hCoV-19/South Korea/IHC610/2020
 ATTAAAGGTTTATACC1- T3142C G5572T G11083T C14805T G26144T AAAAAAAAAAAAAAAA29888-

MT755894
 2020-02-20 2020-07-14
 Saudi Arabia SARS-CoV-2/human/SAU/610/2020
 C241T C3037T C14408T C18877T A23403G G25563T C26735T C27527T C28854T

EPI_ISL_413609 MT159720
 2020-02-21 2020-03-09
 United States SARS-CoV-2/human/USA/CruiseA-4/2020
 C1385T G11083T C29230T C29635T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_413610 MT159721
 2020-02-21 2020-03-09
 United States SARS-CoV-2/human/USA/CruiseA-5/2020
 G11083T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_413611 MT159722
 2020-02-21 2020-03-09
 United States SARS-CoV-2/human/USA/CruiseA-6/2020
 G11083T G11410A C26326T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_414480 MT184908
 2020-02-21 2020-03-12
 United States SARS-CoV-2/human/USA/CruiseA-21/2020
 C254T G11083T G29736T G29751C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_414481 MT184909
 2020-02-21 2020-03-12
 United States SARS-CoV-2/human/USA/CruiseA-22/2020
 G11083T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_417137 MT627270
 2020-02-21 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S84/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_418218
 2020-02-21 2020-03-29
 France hCoV-19/France/HF1465/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTT1- C241T C1059T C3037T C14408T A23403G G25563T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_419831 MT641645
 2020-02-21 2020-04-03
 Australia SARS-CoV-2/human/AUS/NT01/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C3099T G11083T G28378T

EPI_ISL_419832 MT641646
 2020-02-21 2020-04-03
 Australia SARS-CoV-2/human/AUS/NT02/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C9333T G11083T C11671T T11737C

EPI_ISL_429968
 2020-02-21 2020-04-24
 France hCoV-19/France/HF1463/2020
 C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_447900 MT476384
 2020-02-21 2020-05-15
 United States SARS-CoV-2/ENV/USA/UF-11/2020
 A1T C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAA29888-

EPI_ISL_451306
 2020-02-21 2020-05-24
 Italy hCoV-19/Italy/PV-5314-B/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T C14408T A23403G GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_451307
 2020-02-21 2020-05-24
 Italy hCoV-19/Italy/PV-5314-N/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G G24077T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_454920
 2020-02-21 2020-05-29
 China hCoV-19/Wuhan/HB-WH2-148/2020
 G26144T C29545T

EPI_ISL_454921
 2020-02-21 2020-05-29
 China hCoV-19/Wuhan/HB-WH2-149/2020
 C1218T A5027G C15324T G22343C C27247T C29303T

EPI_ISL_454995
 2020-02-21 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM-115/2020
 A4800G A9737G C10626T C29109T

EPI_ISL_471452
 2020-02-21 2020-06-21
 South Korea hCoV-19/Korea/KCDC2046/2020
 AT1- C11074T G11083T C14805T G26144T C26681T

EPI_ISL_471454
 2020-02-21 2020-06-21
 South Korea hCoV-19/Korea/KCDC2048/2020
 ATTAAAGGTTTAT1- G5572T C6327T G11083T C14805T G26144T

EPI_ISL_471455
 2020-02-21 2020-06-21
 South Korea hCoV-19/Korea/KCDC2049/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C2857M G5572T A9204R G11083T A13614W C14805T G26144T

EPI_ISL_479870
 2020-02-21 2020-07-01
 Japan hCoV-19/Japan/PG-0159/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C11752T C28854T G29543C TAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29817-

EPI_ISL_480032
 2020-02-21 2020-07-01
 Japan hCoV-19/Japan/PG-0362/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- G11083T C18656T C29635T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_480043
 2020-02-21 2020-07-01
 Japan hCoV-19/Japan/PG-0373/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- G3179A C6982T C8782T T28144C TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_481370
 2020-02-21 2020-07-03
 South Korea hCoV-19/Korea/KCDC2050/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCAC1- G5572T G11083T C14805T G26144T AAAAAAAAAAAAAAAA29888-

EPI_ISL_481371
 2020-02-21 2020-07-03
 South Korea hCoV-19/Korea/KCDC2051/2020
 T4402C G5062T C8782T C21846T T22117G T28144C

EPI_ISL_481372
 2020-02-21 2020-07-03
 South Korea hCoV-19/Korea/KCDC2052/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- G5572T G11083T C14805T G26144T

EPI_ISL_481374
 2020-02-21 2020-07-03
 South Korea hCoV-19/Korea/KCDC2054/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- G1721S G5572T G11083T C14805T C19983T G26144T

EPI_ISL_497970
 2020-02-21 2020-07-26
 South Korea hCoV-19/Korea/KCDC2069/2020
 G5572T G11083T C14805T C16575T A18095G G20974T T23395A G26144T TTTAATAGCTTCTTAGGAGAATG29846-

EPI_ISL_497975
 2020-02-21 2020-07-26
 South Korea hCoV-19/Korea/KCDC2074/2020
 ATTAAAGGTTTATACC1- C2146T G11083T C14805T G26144T C26681T ACAAAAAAAAAAAAAA29869-

EPI_ISL_497976
 2020-02-21 2020-07-26
 South Korea hCoV-19/Korea/KCDC2075/2020
 ATTAAAGGTT1- G5572T G11083T C12488T C14805T G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497977
 2020-02-21 2020-07-26
 South Korea hCoV-19/Korea/KCDC2076/2020
 ATTAAAGGTTTA1- G5572T G11083T C14805T G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_497978
 2020-02-21 2020-07-26
 South Korea hCoV-19/Korea/KCDC2077/2020
 ATTAAAGGTTT1- G662A G5572T G11083T C14805T G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497979
 2020-02-21 2020-07-26
 South Korea hCoV-19/Korea/KCDC2078/2020
 ATTAAAGGTTT1- G5572T G11083T C14805T G26144T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_497980
 2020-02-21 2020-07-26
 South Korea hCoV-19/Korea/KCDC2079/2020
 ATTAAAGGTTTA1- G5572T G11083T C14805T G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_497981
 2020-02-21 2020-07-26
 South Korea hCoV-19/Korea/KCDC2080/2020
 ATTAAAGGTTT1- G5572T G11083T C14805T C17747T G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_497982
 2020-02-21 2020-07-26
 South Korea hCoV-19/Korea/KCDC2081/2020
 ATTAAAGGTTT1- G5572T G11083T C14805T G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_497984
 2020-02-21 2020-07-26
 South Korea hCoV-19/Korea/KCDC2083/2020
 ATTAAAGGTTTATACCTTCCCAGG1- G5572T G11083T C14805T G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497991
 2020-02-21 2020-07-26
 South Korea hCoV-19/Korea/KCDC2090/2020
 ATTAAAGGTTTATACCTTC1- G5572T G11083T C14805T G26144T ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_497992
 2020-02-21 2020-07-26
 South Korea hCoV-19/Korea/KCDC2091/2020
 ATTAAAGGTTTA1- G5572T G11083T C14805T G26144T ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_497993
 2020-02-21 2020-07-26
 South Korea hCoV-19/Korea/KCDC2092/2020
 ATTAAAGGTTTATACCTTCCC1- G5572T G11083T C14805T G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_527873
 2020-02-21 2020-09-05
 Nigeria hCoV-19/Nigeria/ED01-CV155/2020
 ATTAA1- C21T A2480G C2558T G11083T C14805T G26144T C26625T C27297T G28851T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_530017
 2020-02-21 2020-09-10
 Spain hCoV-19/Spain/MD-H12-90/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G C26208T G29734C ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_540995
 2020-02-21 2020-09-22
 South korea hCoV-19/South Korea/IHC614/2020
 ATTAAAGGTTTATACC1- G5572T G11083T C14805T A15337G G26144T AAAAAAAAAAAAAAAA29888-

EPI_ISL_414571
 2020-02-22 2020-03-13
 China hCoV-19/Hong Kong/VM20002849/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- G11083T C29366T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_417135 MT627288
 2020-02-22 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S82/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_420456
 2020-02-22 2020-04-06
 Australia hCoV-19/Australia/WA11/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C3037T C9333T G11083T C11671T T11737C CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_430131 MT627630
 2020-02-22 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S277/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_437615 MT447163
 2020-02-22 2020-05-01
 Thailand SARS-CoV-2/human/THA/SI202620-NT/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C2942T G4390T C8782T G20134T G24047A T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_454911
 2020-02-22 2020-05-29
 China hCoV-19/Wuhan/HB-WH1-134/2020
 G3013T C17167A

EPI_ISL_454973
 2020-02-22 2020-05-29
 China hCoV-19/Wuhan/HB-WH5-229/2020
 T28144C

EPI_ISL_455010
 2020-02-22 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM2-278/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- T4873C T13243C T14684C A23503T

EPI_ISL_457699
 2020-02-22 2020-06-02
 Italy hCoV-19/Italy/206/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C241T C3037T C14408T A23403G TGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29809-

EPI_ISL_460079
 2020-02-22 2020-06-05
 Italy hCoV-19/Italy/BG-5825-22Feb/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G A26530G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_460091
 2020-02-22 2020-06-05
 Italy hCoV-19/Italy/MI-5925-22Feb/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T C14408T A23403G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_468039
 2020-02-22 2020-06-16
 Australia hCoV-19/Australia/SAP097/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C3099T G11083T G28378T

EPI_ISL_480033
 2020-02-22 2020-07-01
 Japan hCoV-19/Japan/PG-0363/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- G11083T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_480044
 2020-02-22 2020-07-01
 Japan hCoV-19/Japan/PG-0374/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1244T G3179A C6982T C8782T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480045
 2020-02-22 2020-07-01
 Japan hCoV-19/Japan/PG-0375/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A691T G3179A C6982T C8782T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480046
 2020-02-22 2020-07-01
 Japan hCoV-19/Japan/PG-0376/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- G3179A C6982T C8782T T28144C TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_481375
 2020-02-22 2020-07-03
 South Korea hCoV-19/Korea/KCDC2055/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- G5572T G11083T C14805T G26144T

EPI_ISL_481378
 2020-02-22 2020-07-03
 South Korea hCoV-19/Korea/KCDC2058/2020
 G5572T G11083T T12520C C14805T G26144T

EPI_ISL_486659
 2020-02-22 2020-07-10
 Italy hCoV-19/Italy/Hsacco-3/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

EPI_ISL_497983
 2020-02-22 2020-07-26
 South Korea hCoV-19/Korea/KCDC2082/2020
 ATTAAAGGTTTAT1- G5572T G11083T C14805T G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_497985
 2020-02-22 2020-07-26
 South Korea hCoV-19/Korea/KCDC2084/2020
 G5572T G11083T C14805T G26144T

EPI_ISL_497987
 2020-02-22 2020-07-26
 South Korea hCoV-19/Korea/KCDC2086/2020
 ATTAAAGGTTTATAC1- G5572T G11083T G13564T C14805T G15708T G26144T

EPI_ISL_497989
 2020-02-22 2020-07-26
 South Korea hCoV-19/Korea/KCDC2088/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- G5572T G11083T C14805T C25521T G26144T

EPI_ISL_530018
 2020-02-22 2020-09-10
 Spain hCoV-19/Spain/MD-H12-91/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C17639T A18585T A20268G A23403G C28638T ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_540996
 2020-02-22 2020-09-22
 South korea hCoV-19/South Korea/IHC685/2020
 ATTAAAGGTTTATACC1- G5572T G11083T C14805T G26144T AAAAAAAAAAAAAAAA29888-

EPI_ISL_412026
 2020-02-23 2020-02-24
 China hCoV-19/Hefei/2/2020
 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_412862 MT118835
 2020-02-23 2020-02-27
 United States 2019-nCoV/USA-CA9/2020
 C9924T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_419211
 2020-02-23 2020-04-01
 Israel hCoV-19/Israel/ISR_JP0320/2020
 ATTAAAGGTTTATACCTTCC1- CA21GG G11083T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871C

EPI_ISL_425117
 2020-02-23 2020-04-14
 South Korea hCoV-19/Korea/KCDC2001/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCT1- G26144T AAAAAAAAAAAAAAAA29888-

EPI_ISL_426163
 2020-02-23 2020-04-15
 South Korea hCoV-19/Korea/KCDC2003/2020
 TTAAAGGTTTATACC2- G7675T T8767C C8782T C17104T C18167T G26167T T28144C G29593A ACAAAAAAAAAAAAAA29869- A29885G

EPI_ISL_426167
 2020-02-23 2020-04-15
 South Korea hCoV-19/Korea/KCDC2003/2020/P1
 TTAAAGGTTTATACC2- G7675T T8767C C8782T C17104T C18167T G26167T T28144C G29593A ACAAAAAAAAAAAAAA29869- A29885G

EPI_ISL_426181
 2020-02-23 2020-04-15
 South Korea hCoV-19/Korea/KCDC2011/2020
 ATTAAAGGTTTATAC1- C16T T4402C G5062T C8782T C17474T T28144C A29871G AAAAAAAAAAAAAAAA29888-

EPI_ISL_426183
 2020-02-23 2020-04-15
 South Korea hCoV-19/Korea/KCDC2013/2020
 ATTAAAGGTTTATAC1- T490A C1101T G3119A C8782T C24034T T26729C G28077C T28144C AAAAAAAAAAAAAAAA29888-

EPI_ISL_455008
 2020-02-23 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM2-274/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- A9243G C11074T G11083T T13243C G29742T

EPI_ISL_455365
 2020-02-23 2020-05-29
 China hCoV-19/Wuhan/HB-WH1-132/2020
 G9130T G18412- T25382C T28144C C29095T G29179T

EPI_ISL_455366
 2020-02-23 2020-05-29
 China hCoV-19/Wuhan/HB-WH1-133/2020
 G10412T C26447G T28144C T29251- G29737T

EPI_ISL_455367
 2020-02-23 2020-05-29
 China hCoV-19/Wuhan/HB-WH1-139/2020
 G18412- C26447G

EPI_ISL_455368
 2020-02-23 2020-05-29
 China hCoV-19/Wuhan/HB-WH1-144/2020
 C8782T C19154T C26447G T28144C T28250G A28254- C29095T G29179T

EPI_ISL_457701
 2020-02-23 2020-06-02
 Oman hCoV-19/Oman/RESP-20-797/2020
 C884T G1397A G8653T G11083T T28688C G29742T

EPI_ISL_479864
 2020-02-23 2020-07-01
 Japan hCoV-19/Japan/PG-0141/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- G1458T GG28903CT TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_481373
 2020-02-23 2020-07-03
 South Korea hCoV-19/Korea/KCDC2053/2020
 G5572T C6267T G11083T C14805T G26144T

EPI_ISL_481377
 2020-02-23 2020-07-03
 South Korea hCoV-19/Korea/KCDC2057/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- G2129K G5572T A9889G G11083T G11999K G12758R C14805T G26144T T27705K

EPI_ISL_486660
 2020-02-23 2020-07-10
 Italy hCoV-19/Italy/Hsacco-4/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T C14408T A23403G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_490008 MT755895
 2020-02-23 2020-07-14
 Saudi Arabia SARS-CoV-2/human/SAU/627/2020
 C241T C1549T C3037T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_497988
 2020-02-23 2020-07-26
 South Korea hCoV-19/Korea/KCDC2087/2020
 ATTAAAGGTTTATACCT1- G5572T G11083T C14805T G26144T

EPI_ISL_497994
 2020-02-23 2020-07-26
 South Korea hCoV-19/Korea/KCDC2093/2020
 A1- G5572T A10699G G11083T C14805T G26144T

EPI_ISL_530019
 2020-02-23 2020-09-10
 Spain hCoV-19/Spain/MD-H12-93/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1181T C3037T C14408T A20268G A23403G G29734C ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_540997
 2020-02-23 2020-09-22
 South korea hCoV-19/South Korea/IHC719/2020
 ATTAAAGGTTTATACC1- T3142C G5572T G11083T C14805T G26144T AAAAAAAAAAAAAAAA29888-

EPI_ISL_412970 MT152824
 2020-02-24 2020-03-01
 United States SARS-CoV-2/human/USA/WA2/2020
 C5784T C8782T C17747T A17858G C18060T T28144C

EPI_ISL_413622 MT159715
 2020-02-24 2020-03-09
 United States SARS-CoV-2/human/USA/CruiseA-17/2020
 A5845T G11083T A25137C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_413623 MT159716
 2020-02-24 2020-03-09
 United States SARS-CoV-2/human/USA/CruiseA-18/2020
 TGGTCATGTTATGGT508- G11083T C22033A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_413996
 2020-02-24 2020-03-10
 Switzerland hCoV-19/Switzerland/TI9486/2020
 ATTAAAG1- A187G C241T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_414485 MT184913
 2020-02-24 2020-03-12
 United States 2019-nCoV/USA-CruiseA-26/2020
 G11083T C12513Y T20988Y C25587Y C28367Y G28916A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_414519 MT215194
 2020-02-24 2020-03-13
 China SARS-CoV-2/human/HKG.85_VM20002868/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- G1595A C9962T C11704T T13929C C14724T T21584G G26144T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_417445
 2020-02-24 2020-02-24
 Italy hCoV-19/Italy/UniMI01/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- C241T C3037T A11827T G11831T C11871T T11987A T12538A A12547T T12551A C14408T A23403G GAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29864-

EPI_ISL_417446
 2020-02-24 2020-02-24
 Italy hCoV-19/Italy/UniMI02/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C3037T C7239A T7249G G7272A C7279A G7290A C7296A C7299A T7345A T7348A T7351G A7603C A7606T G7646C T7666A A7710G C14408T A23403G A23450T GAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29864A

EPI_ISL_417447
 2020-02-24 2020-03-26
 Italy hCoV-19/Italy/UniMI03/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C3037T C14408T A23403G GAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29864A

EPI_ISL_419247
 2020-02-24 2020-04-01
 China hCoV-19/Hong Kong/HKPU83-1702/2020
 G1149T C9962T G11083T C14724T T21584G G26144T

EPI_ISL_419835 MT641648
 2020-02-24 2020-04-03
 Australia SARS-CoV-2/human/AUS/NT05/2020
 ATTAAAGGT1- G11083T C29635T

EPI_ISL_430292 MT632586
 2020-02-24 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S254/2020
 C5784T C8782T C17747T A17858G C18060T T28144C

EPI_ISL_437932
 2020-02-24 2020-05-12
 Austria hCoV-19/Austria/CeMM0045/2020
 C241T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAA29886-

EPI_ISL_450442 MT412134
 2020-02-24 2020-04-29
 China SARS-CoV-2/human/CHN/HN03/2020
 ATTAAAGGTTTATACCTTCCCAGG1- A270G T4402C G5062T C8782T T28144C AAAAAAAAAAAA29892-

EPI_ISL_454915
 2020-02-24 2020-05-29
 China hCoV-19/Wuhan/HB-WH1-138/2020
 C15324T C28093T C29303T

EPI_ISL_454998
 2020-02-24 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM-120/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- C8782T T28144C

EPI_ISL_455004
 2020-02-24 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM2-269/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- T13243C T14684C

EPI_ISL_455009
 2020-02-24 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM2-276/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- C11897T T13243C T14684C G24262T

EPI_ISL_455013
 2020-02-24 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM2-282/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- T13243C T14684C C26447G

EPI_ISL_455370
 2020-02-24 2020-05-29
 China hCoV-19/Wuhan/HB-WH2-146/2020
 G625T C19154T C26447G T28144C T28250G A28254-

EPI_ISL_457704
 2020-02-24 2020-06-02
 Oman hCoV-19/Oman/RESP-20-837/2020
 C635T C884T G1397A G8653T G11083T G14443T T24211C C27155T T28688C G29742T

EPI_ISL_460086
 2020-02-24 2020-06-05
 Italy hCoV-19/Italy/CR-7070-24Feb/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_479997
 2020-02-24 2020-07-01
 Japan hCoV-19/Japan/PG-0322/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C11752T C19170A TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_481379
 2020-02-24 2020-07-03
 South Korea hCoV-19/Korea/KCDC2059/2020
 ATTAAAGGTTTATACCTTCCCAGG1- G5572T A9889G G11083T C14805T C16961T G26144T

EPI_ISL_490009
 2020-02-24 2020-07-14
 Saudi Arabia hCoV-19/Saudi Arabia/640/2020
 C241T C3037T C11956T T13345G C14408T T17796G C18877T A23403G G25563T C26735T

EPI_ISL_497784
 2020-02-24 2020-07-25
 China hCoV-19/Hong Kong/HKU-200723-017/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C29366T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_497986
 2020-02-24 2020-07-26
 South Korea hCoV-19/Korea/KCDC2085/2020
 ATTAAAGGTTTATACCTTCC1- G5572T G11083T C14805T G22346T G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497990
 2020-02-24 2020-07-26
 South Korea hCoV-19/Korea/KCDC2089/2020
 ATTAAAGGTTTA1- G5572T G11083T C14805T G26144T AAA29901-

EPI_ISL_506947
 2020-02-24 2020-08-02
 South Korea hCoV-19/Korea/KCDC2153/2020
 ATTAAAGGTTTATA1- G256T G5572T G11083T C14805T C21575T G26144T C29098T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_530020
 2020-02-24 2020-09-10
 Spain hCoV-19/Spain/MD-H12-94/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_539531
 2020-02-24 2020-09-18
 Spain hCoV-19/Spain/CN-ISCIII-201048/2020
 C241T C3037T C3792T A4000C C8645A C14408T G21280A A21487G T21539C T21656C A23403G A23880T T29760C ATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29850-

EPI_ISL_568579
 2020-02-24 2020-10-02
 Italy hCoV-19/Italy/LOM-INMI-10734/2020
 C241T C3037T C14408T A23403G A26530G AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

MT755896
 2020-02-24 2020-07-14
 Saudi Arabia SARS-CoV-2/human/SAU/640/2020
 C241T C3037T C11956T T13345G C14408T T17796G C18877T A23403G G25563T C26735T

EPI_ISL_412912
 2020-02-25 2020-02-28
 Germany hCoV-19/Germany/Baden-Wuerttemberg-1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T G10265A C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_412964
 2020-02-25 2020-02-28
 Brazil hCoV-19/Brazil/SPBR-01/2020
 C241T C3037T C14408T A23403G AAAAAAAAAAAAA29891-

EPI_ISL_413619 MT159712
 2020-02-25 2020-03-09
 United States SARS-CoV-2/human/USA/CruiseA-14/2020
 C6636T G11083T C11750T C11956T T25795C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_414005
 2020-02-25 2020-03-10
 United Kingdom hCoV-19/England/200940527/2020
 A2480G C2558T C11171Y C14805T T21072C G26144T

EPI_ISL_414009
 2020-02-25 2020-03-10
 United Kingdom hCoV-19/England/200960515/2020
 C10741T C14805T G26144T

EPI_ISL_414497 MT582498
 2020-02-25 2020-03-12
 Germany SARS-CoV-2/human/DEU/NRW-02.1/2020
 G1440A G2891A

EPI_ISL_414517 MT215195
 2020-02-25 2020-03-13
 China SARS-CoV-2/human/HKG/90_VM20002907/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- G1595A C9962T C11704T T13929C C14724T T21584G G26144T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_414623
 2020-02-25 2020-03-15
 France hCoV-19/France/GE1583/2020/P1
 C8782T T9477A C14805T C25553T G25979T T28144C C28657T C28863T A29887C A29891C A29894C

EPI_ISL_414663 CNA0013710 MT568635
 2020-02-25 2020-03-16
 China Guangzhou/GZMU0016/2020
 ATTAAAGGTTT1- C8782T T28144C ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_414687 CNA0013712 MT568637
 2020-02-25 2020-03-16
 China Guangzhou/GZMU0031/2020
 ATTAAAGGTTTA1- AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872G

EPI_ISL_414688 CNA0013713 MT568638
 2020-02-25 2020-03-16
 China Guangzhou/GZMU0042/2020
 ATTAAAGGTTTAT1- C8782T C26447G T28144C T28250G A28254- C29095T ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_414689 CNA0013714 MT568639
 2020-02-25 2020-03-16
 China Guangzhou/GZMU0044/2020
 ATTAAAGGTTT1- C8782T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872G

EPI_ISL_414690 CNA0013715 MT568640
 2020-02-25 2020-03-16
 China Guangzhou/GZMU0047/2020
 ATTAAAGGTTTAT1- C8782T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_414691 CNA0013716 MT568641
 2020-02-25 2020-03-16
 China Guangzhou/GZMU0048/2020
 AT1- C8782T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_414692 CNA0013717 MT568634
 2020-02-25 2020-03-16
 China Guangzhou/GZMU0014/2020
 ATTAAAGGTTTA1- A1430G G16535T C18568T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_418251
 2020-02-25 2020-02-25
 Spain hCoV-19/Spain/Madrid201105/2020
 C241T C3037T C8782T T11244C C14408T C21263T A23403G AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_430737
 2020-02-25 2020-04-27
 China hCoV-19/Beijing/BJ1112/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1848T T8767C C8782T C9520T C17104T A22622G G26167T GAT27382CTC A28055G T28144C G29593A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_435121
 2020-02-25 2020-05-03
 United Arab Emirates hCoV-19/United Arab Emirates/L0184/2020
 C1170T C1185T G1397A G11083T T16545C C18377T T28688C G29374A G29742T

EPI_ISL_435126
 2020-02-25 2020-05-03
 United Arab Emirates hCoV-19/United Arab Emirates/L0904/2020
 G61T G1397A G11083T C20235A T20787C T22042C T28688C T28835C A29060G G29742T

EPI_ISL_435131
 2020-02-25 2020-05-03
 United Arab Emirates hCoV-19/United Arab Emirates/L2409/2020
 G1397A G11083T T28688C G29742T

EPI_ISL_435135
 2020-02-25 2020-05-03
 United Arab Emirates hCoV-19/United Arab Emirates/L4682/2020
 G1397A G2246A C9246T T28688C G29742T

EPI_ISL_435138
 2020-02-25 2020-05-03
 United Arab Emirates hCoV-19/United Arab Emirates/L6599/2020
 C13957T C15324T T21644C C23170T C24378T C29303T

EPI_ISL_435139
 2020-02-25 2020-05-03
 United Arab Emirates hCoV-19/United Arab Emirates/L6627/2020
 G1397A C2724T G11083T T28688C G29742T

EPI_ISL_437613 MT447165
 2020-02-25 2020-05-01
 Thailand SARS-CoV-2/human/THA/SI202872-NT/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- A895G C2942T G4390T G6865T C8782T G10670C G20134T G24047A T28144C TTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29709-

EPI_ISL_437614 MT447164
 2020-02-25 2020-05-01
 Thailand SARS-CoV-2/human/THA/SI202769-NT/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- G529T A895G T1891G C2652T G20134T G24047A T28144C CCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29732-

EPI_ISL_447252
 2020-02-25 2020-05-17
 Taiwan hCoV-19/Taiwan/TSGH-26/2020
 G199T C1059T G1397A A1637T T2290G -11075TTT G11083T G25785T A28288G T28648C T28688C T28888A G29742T -29870CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAC

EPI_ISL_447920
 2020-02-25 2020-05-19
 Thailand hCoV-19/Thailand/Bangkok_1716/2020
 A895G C2942T G4390T C8782T C9598T G20134T G24047A T28144C A29873G AAAAAAAAAAAA29892-

EPI_ISL_454912
 2020-02-25 2020-05-29
 China hCoV-19/Wuhan/HB-WH1-135/2020
 

EPI_ISL_455012
 2020-02-25 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM2-280/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- T4873C T13243C T14684C

EPI_ISL_460094
 2020-02-25 2020-06-05
 Italy hCoV-19/Italy/PV-8058-25Feb/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A20255G A23403G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_464185
 2020-02-25 2020-06-11
 United Kingdom hCoV-19/England/20094061404/2020
 G11083T A19949W A20055R

EPI_ISL_464186
 2020-02-25 2020-06-11
 United Kingdom hCoV-19/England/20094061504/2020
 C635Y C6606Y C7735Y G11083T C11976Y C28253Y

EPI_ISL_479802
 2020-02-25 2020-07-01
 Japan hCoV-19/Japan/PG-0031/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C11752T A14513G AAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29813-

EPI_ISL_479852
 2020-02-25 2020-07-01
 Japan hCoV-19/Japan/PG-0119/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- G11083T TTTGGGTGTTTA21982- C28310A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479871
 2020-02-25 2020-07-01
 Japan hCoV-19/Japan/PG-0160/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C11752T G28380T C28854T G29543C ATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29833-

EPI_ISL_479998
 2020-02-25 2020-07-01
 Japan hCoV-19/Japan/PG-0323/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C11752T C19170A TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_480047
 2020-02-25 2020-07-01
 Japan hCoV-19/Japan/PG-0377/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- G3179A C6982T C8782T T28144C TAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29817-

EPI_ISL_493137 MT781415
 2020-02-25 2020-07-21
 Thailand SARS-CoV-2/human/THA/MUMT-3/2020
 ATT1- A895G C2942T G4390T C8782T G24047A T28144C GTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29828-

EPI_ISL_501220
 2020-02-25 2020-07-31
 Malaysia hCoV-19/Malaysia/6359/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C11752T C19170A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_530021
 2020-02-25 2020-09-10
 Spain hCoV-19/Spain/MD-H12-95/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G15327T A20268G A23403G G29734C C29741T ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_413019
 2020-02-26 2020-03-03
 Switzerland hCoV-19/Switzerland/1000477102/2020
 -11075TTT G11083T C14805T T17247C C24378T G26144T C26894T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_413997
 2020-02-26 2020-03-10
 Switzerland hCoV-19/Switzerland/GE3895/2020
 ATTAAAGGTTTAT1- C241T C3037T C14408T T19839C A23403G GGG28881AAC

EPI_ISL_414011
 2020-02-26 2020-03-10
 United Kingdom hCoV-19/England/200990006/2020
 G11083T C14805T T17247C G26144T

EPI_ISL_414499 MT582496
 2020-02-26 2020-03-12
 Germany SARS-CoV-2/human/DEU/NRW-04/2020
 G1440A G2891A C4655T C22323Y

EPI_ISL_414600
 2020-02-26 2020-03-14
 France hCoV-19/France/GE1583/2020
 C8782T T9477A C14805T C25553T G25979T T28144C C28657T C28863T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_414624
 2020-02-26 2020-03-15
 France hCoV-19/France/N1620/2020/P1
 T18C A187G C241T C3037T C10728T C14408T A23403G

EPI_ISL_414625
 2020-02-26 2020-03-15
 France hCoV-19/France/PL1643/2020
 C241T C1059T C3037T C12049T T13521C C14408T A23403G G25563T

EPI_ISL_415741 MT370516
 2020-02-26 2020-03-19
 Taiwan SARS-CoV-2/human/TWN/CGMH-CGU-03/2020
 AT1- C1059T G1397A G11083T C23934T T28648C T28688C G29742T A29903-

EPI_ISL_416142
 2020-02-26 2020-03-20
 Denmark hCoV-19/Denmark/SSI-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23116T A23403G GGG28881AAC ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_416502
 2020-02-26 2020-03-22
 France hCoV-19/France/B2330/2020
 C241T C1059T C3037T G12866A C14408T A23403G G25563T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_417134 MT627263
 2020-02-26 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S81/2020
 A4494G C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417484
 2020-02-26 2020-03-26
 Norway hCoV-19/Norway/1380/2020
 ATTAAAGGT1- C884T G1397A C3040T G8653T A9353R G11083T T28688C G29742T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_418219
 2020-02-26 2020-03-29
 France hCoV-19/France/B1623/2020
 C241T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_418247
 2020-02-26 2020-02-26
 Spain hCoV-19/Spain/CastillayLeon201061/2020
 C241T C3037T C8782T C14408T C17285T A23403G GAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29795-

EPI_ISL_419250
 2020-02-26 2020-04-01
 China hCoV-19/Hong Kong/HKPU89-2502/2020
 G1149T C9962T G11083T C14724T T21584G G26144T

EPI_ISL_419554
 2020-02-26 2020-04-02
 United States hCoV-19/USA/CA_2602/2020
 G14718T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_419656
 2020-02-26 2020-04-03
 Austria hCoV-19/Austria/CeMM0003/2020
 C241T C3037T G12832A C14408T A23403G GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_421246
 2020-02-26 2020-04-07
 China hCoV-19/Nanchang/JXN3T4/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C8782T T28144C AAAAAAAAAAAA29892-

EPI_ISL_427809
 2020-02-26 2020-04-19
 South Korea hCoV-19/Korea/KCDC2015/2020
 ATTAAAGGTTTATACC1- CA117TG G5572T G11083T C14805T G26144T C28311T A29871T AAAAAAAAAAAAAAAA29888-

EPI_ISL_430126 MT627627
 2020-02-26 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S272/2020
 A4494G C8782T C17747T A17858G C18060T T28144C

EPI_ISL_435580
 2020-02-26 2020-05-05
 United States hCoV-19/USA/CA-SCCPHD-UC101/2020
 G14718T

EPI_ISL_450747
 2020-02-26 2020-05-22
 Canada hCoV-19/Canada/ON_SHSC-01/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C835T C884T G1397A G8653T G11083T T28688C AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_454996
 2020-02-26 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM-116/2020
 C6720T C8782T C21034T T28144C

EPI_ISL_455007
 2020-02-26 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM2-272/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- C965T T4873C T13243C T14684C A26098T

EPI_ISL_457698 CNA0013992
 2020-02-26 2020-06-02
 China Guangzhou/GZMU0117/2020
 T3160C G6819T C17373T C21711T G29527A AAAAAAAAAAAA29892-

EPI_ISL_460082
 2020-02-26 2020-06-05
 Italy hCoV-19/Italy/BG-9209-26Feb/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A20268G A23403G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_460083
 2020-02-26 2020-06-05
 Italy hCoV-19/Italy/BG-9225-26Feb/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G A26530G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_460087
 2020-02-26 2020-06-05
 Italy hCoV-19/Italy/CR-9206-26Feb/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_460088
 2020-02-26 2020-06-05
 Italy hCoV-19/Italy/CR-9214-26Feb/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C3037T C14408T C23191T A23403G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_460089
 2020-02-26 2020-06-05
 Italy hCoV-19/Italy/CR-9491-26Feb/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T C14408T A23403G GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_460095
 2020-02-26 2020-06-05
 Italy hCoV-19/Italy/PV-9675-26Feb/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T C14980T A20268G A23403G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_464187
 2020-02-26 2020-06-11
 United Kingdom hCoV-19/England/20096051004/2020
 T3628Y G11083T C11976Y

EPI_ISL_464195
 2020-02-26 2020-06-11
 United Kingdom hCoV-19/England/20098017604/2020
 C241T C3037T C7420T C14408T A23403G

EPI_ISL_475544
 2020-02-26 2020-06-23
 Sweden hCoV-19/Sweden/20-04736/2020
 T1391G G1397A C3393T T14577C T28688C G29742T

EPI_ISL_479826
 2020-02-26 2020-07-01
 Japan hCoV-19/Japan/PG-0071/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C11752T G16636T C19170A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480048
 2020-02-26 2020-07-01
 Japan hCoV-19/Japan/PG-0378/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- G3179A C6982T C8782T T28144C TAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29817-

EPI_ISL_480049
 2020-02-26 2020-07-01
 Japan hCoV-19/Japan/PG-0379/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- G3179A C6982T C8782T G25106A T28144C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_485398 MT730002
 2020-02-26 2020-07-08
 South Korea SARS-CoV-2/human/KOR/2020-CoV55_Nasopharynx/2020
 ATTAAAGGTTTATAC1- T3142C G5572T G11083T C14805T G26144T AAAAAAAAAAAAAAAA29888-

EPI_ISL_486664
 2020-02-26 2020-07-10
 Italy hCoV-19/Italy/Hsacco-8/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

EPI_ISL_490010 MT755897
 2020-02-26 2020-07-14
 Saudi Arabia SARS-CoV-2/human/SAU/656/2020
 C241T C3037T G3476A C14408T C18877T A23403G G25563T G25687T C26735T

EPI_ISL_497995
 2020-02-26 2020-07-26
 South Korea hCoV-19/Korea/KCDC2094/2020
 G5572T G11083T C14805T C19145T G26144T

EPI_ISL_510547
 2020-02-26 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2203/2020
 AC27- A29T C32A G5572T G11083T C14805T G26144T C28311T

EPI_ISL_516083 MT479216
 2020-02-26 2020-05-18
 Italy SARS-CoV-2/human/ITA/71205/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C3037T C14408T G22205S A23403G T25464Y A26530G GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_527916
 2020-02-26 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42167340/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C313T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_527917
 2020-02-26 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42167842/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T T19839C A23403G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_530022
 2020-02-26 2020-09-10
 Spain hCoV-19/Spain/MD-H12-96/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G5411A C6541T A11830G C14408T A20268G A23403G ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

MT276324
 2020-02-26 2020-04-02
 United States SARS-CoV-2/human/USA/CA_2602/2020
 G14718T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_412972
 2020-02-27 2020-03-01
 Mexico hCoV-19/Mexico/CDMX-InDRE_01/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_413020
 2020-02-27 2020-03-03
 Switzerland hCoV-19/Switzerland/1000477377/2020
 C241T C3037T C3373A C14408T A23403G GGG28881AAC G29422T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_413025 MT163716
 2020-02-27 2020-03-03
 United States SARS-CoV-2/human/USA/WA3-UW1/2020
 A1T AC35TT T2446C C3411T G5572T G11083T C14805T G26144T G29864A TG29867AA C29870A

EPI_ISL_413490
 2020-02-27 2020-03-05
 New Zealand hCoV-19/New Zealand/01/2020
 G1397A G11083T G25618A T28688C G29742T

EPI_ISL_413513
 2020-02-27 2020-03-06
 South Korea hCoV-19/South Korea/KUMC03/2020
 ATTAAAGGTTTA1- T4402C G5062T C8782T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_413514
 2020-02-27 2020-03-06
 South Korea hCoV-19/South Korea/KUMC04/2020
 ATTAAAGGTTTA1- T4402C G5062T C8782T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_413515
 2020-02-27 2020-03-06
 South Korea hCoV-19/South Korea/KUMC05/2020
 ATTAAAGGTTTA1- T4402C G5062T C8782T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_413516
 2020-02-27 2020-03-06
 South Korea hCoV-19/South Korea/KUMC06/2020
 ATTAAAGGTTTA1- T4402C G5062T C8782T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_413555
 2020-02-27 2020-03-07
 United Kingdom hCoV-19/Wales/PHW1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_413558 MT419831
 2020-02-27 2020-03-07
 United States SARS-CoV-2/human/USA/CA-CDPH-UC2/2020
 C9924T A15641C TAT29832CTG

EPI_ISL_413559 MT419830
 2020-02-27 2020-03-07
 United States SARS-CoV-2/human/USA/CA-CDPH-UC3/2020
 C21T C9924T C9951T

EPI_ISL_413999
 2020-02-27 2020-03-10
 Switzerland hCoV-19/Switzerland/AG0361/2020
 ATTAAAGGTTT1- C241T C3037T C14408T G20398A A23403G A26530G AAAAA29899-

EPI_ISL_414008
 2020-02-27 2020-03-10
 United Kingdom hCoV-19/England/200960041/2020
 G1397A G11083T C12249T G21641K C21658T T28688C G29742T

EPI_ISL_414012
 2020-02-27 2020-03-10
 United Kingdom hCoV-19/England/200990723/2020
 C241T C3037T G11842A C14408T A23403G GGG28881AAC

EPI_ISL_414019
 2020-02-27 2020-03-10
 Switzerland hCoV-19/Switzerland/GE3121/2020
 ATTAAAG1- C241T C3037T C14408T A20268G A23403G AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_414020
 2020-02-27 2020-03-10
 Switzerland hCoV-19/Switzerland/GE5373/2020
 ATTAAAGGTTT1- C241T C3037T C14408T A20268G A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_414021
 2020-02-27 2020-03-10
 Switzerland hCoV-19/Switzerland/BL0902/2020
 ATTAAAGGTT1- C241T C3037T C14408T T19839C A23403G GGG28881AAC AAA29901-

EPI_ISL_414022
 2020-02-27 2020-03-10
 Switzerland hCoV-19/Switzerland/GE9586/2020
 ATTAAAGG1- C241T C3037T C14408T T19839C A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_414505 MT582494
 2020-02-27 2020-03-13
 Germany SARS-CoV-2/human/DEU/NRW-06/2020
 G1440A G2891A

EPI_ISL_414523
 2020-02-27 2020-03-13
 United Kingdom hCoV-19/England/200990660/2020
 C241T C3037T C14408T A23403G C25350T

EPI_ISL_414686
 2020-02-27 2020-03-16
 China hCoV-19/Guangzhou/GZMU0030/2020/P2
 ATTAAAGGTTTA1- C186T C1734T G26458T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_415641
 2020-02-27 2020-03-18
 Georgia hCoV-19/Georgia/Tb-54/2020
 ATTAAAGGTTTATACCTTCCCAGG1- A915G G11083T G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_415698
 2020-02-27 2020-03-19
 Switzerland hCoV-19/Switzerland/GR2988/2020
 ATTA1- C241T C3037T C13176T C14408T A23403G GGG28881AAC

EPI_ISL_415699
 2020-02-27 2020-03-19
 Switzerland hCoV-19/Switzerland/GR3043/2020
 ATTAAAGGT1- C241T C3037T C13176T C14408T A23403G GGG28881AAC

EPI_ISL_415743 MT370518
 2020-02-27 2020-03-19
 Taiwan SARS-CoV-2/human/TWN/CGMH-CGU-05/2020
 C1059T G1397A G11083T C23934T T28648C T28688C G29742T

EPI_ISL_416484 MT233519
 2020-02-27 2020-03-22
 Spain SARS-CoV-2/human/ESP/Valencia5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417096 MT627276
 2020-02-27 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S43/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417483
 2020-02-27 2020-03-26
 Norway hCoV-19/Norway/1379/2020
 ATTAAAG1- C1346M G11083T C14805T G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_419555
 2020-02-27 2020-04-02
 United States hCoV-19/USA/WA_5030/2020
 T2446C C3411T G5572T G11083T C14805T G26144T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_419558
 2020-02-27 2020-04-02
 United States hCoV-19/USA/OR_2656/2020
 G11083T C14805T G26144T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_420799 MT304474
 2020-02-27 2020-04-06
 South Korea SARS-CoV-2/human/KOR/BA-ACH_2604/2020
 G5572T G11083T C14805T G26144T C28311T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_428830
 2020-02-27 2020-04-22
 Singapore hCoV-19/Singapore/51/2020
 ATTAAA1- C8782T ACTTGAACTGCAAGATCATAATGAAACTTGTCACGCCTAAACGAACATGAAATTTCTTGTTTTCTTAGGAATCATCACAACTGTAGCTGCATTTCACCAAGAATGTAGTTTACAGTCATGTACTCAACATCAACCATATGTAGTTGATGACCCGTGTCCTATTCACTTCTATTCTAAATGGTATATTAGAGTAGGAGCTAGAAAATCAGCACCTTTAATTGAATTGTGCGTGGATGAGGCTGGTTCTAAATCACCCATTCAGTACATCGATATCGGTAATTATACAGTTTCCTGTTTACCTTTTACAATTAATTGCCAGGAACCTAAATTGGGTAGTCTTGTAGTGCGTTGTTCGTTCTATGAAGACTTTTTAGAGTATCAT27848- GTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29759-

EPI_ISL_430847
 2020-02-27 2020-04-28
 Sweden hCoV-19/Sweden/20-04631/2020
 G1397A A7970G G11083T G14653A C18788T T28688C G29742T

EPI_ISL_437993
 2020-02-27 2020-05-12
 Austria hCoV-19/Austria/CeMM0143/2020
 C241T C3037T G12832A C14408T A23403G GGG28881AAC A29865R AAAAAAAAAAAAAA29890-

EPI_ISL_450512
 2020-02-27 2020-05-21
 Lebanon hCoV-19/Lebanon/S5_762/2020
 G8A C884T G1397A C1884T A7766G G8653T G11083T C25578T T28688C G29742T

EPI_ISL_454750
 2020-02-27 2020-05-29
 Netherlands hCoV-19/Netherlands/NoordHolland_10001/2020
 ATTA1- C241T C3037T C14408T A23403G GGG28881AAC T29148C AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_454916
 2020-02-27 2020-05-29
 China hCoV-19/Wuhan/HB-WH1-140/2020
 C17690T C22482T

EPI_ISL_454992
 2020-02-27 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM-109/2020
 G26144T

EPI_ISL_457749
 2020-02-27 2020-06-02
 Italy hCoV-19/Italy/484/2020
 ATTAAA1- C241T C3037T C14408T A23403G A26530G GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_464193
 2020-02-27 2020-06-11
 United Kingdom hCoV-19/England/20098017204/2020
 C635Y C7735Y G11083T C11976Y C28253Y

EPI_ISL_464194
 2020-02-27 2020-06-11
 United Kingdom hCoV-19/England/20098017504/2020
 C241T C3037T C14408T A23403G C25350T

EPI_ISL_470851
 2020-02-27 2020-06-19
 Australia hCoV-19/Australia/WA34/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C9333T G11083T C11671T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_476559
 2020-02-27 2020-06-25
 Morocco hCoV-19/Morocco/refstage1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_479827
 2020-02-27 2020-07-01
 Japan hCoV-19/Japan/PG-0072/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- A10276G C11752T C19170A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479828
 2020-02-27 2020-07-01
 Japan hCoV-19/Japan/PG-0074/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAAC1- C11752T C19170A A29433G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_490011 MT755898
 2020-02-27 2020-07-14
 Saudi Arabia SARS-CoV-2/human/SAU/671/2020
 C66T C241T C3037T T4096C C5700T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_497996
 2020-02-27 2020-07-26
 South Korea hCoV-19/Korea/KCDC2095/2020
 ATTAAAGGTTTATACC1- G5572T G11083T C14805T C25416T G26144T AATGACAAAAAAAAAAAA29865- A29885G

EPI_ISL_497998
 2020-02-27 2020-07-26
 South Korea hCoV-19/Korea/KCDC2097/2020
 ATTAA1- C203T G5572T G11083T C14805T G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_506948
 2020-02-27 2020-08-02
 South Korea hCoV-19/Korea/KCDC2154/2020
 ATTAA1- G256T G5572T G11083T C14805T C21575T G26144T C29098T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_506949
 2020-02-27 2020-08-02
 South Korea hCoV-19/Korea/KCDC2155/2020
 AT1- G256T G5572T G11083T C14805T C21575T G26144T C29098T

EPI_ISL_530023
 2020-02-27 2020-09-10
 Spain hCoV-19/Spain/MD-H12-97/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T A12048G C13115T T25541C C26088T T28144C ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_547499
 2020-02-27 2020-09-24
 Netherlands hCoV-19/Netherlands/NH-RIVM-10073/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G T24079A GGG28881AAC T29148C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT276325
 2020-02-27 2020-04-02
 United States SARS-CoV-2/human/USA/WA_5030/2020
 T2446C C3411T G5572T G11083T C14805T G26144T AAAAAAAAAAAAAAAAAAAAA29883-

MT276328
 2020-02-27 2020-04-02
 United States SARS-CoV-2/human/USA/OR_2656/2020
 G11083T C14805T G26144T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_412975
 2020-02-28 2020-03-02
 Australia hCoV-19/Australia/NSW05/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1397A G4255A G11083T A20047G T28688C G29742T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_413016
 2020-02-28 2020-03-02
 Brazil hCoV-19/Brazil/SPBR-02/2020
 C2388T G11083T C14805T T17247C G26144T

EPI_ISL_413455 MT163717
 2020-02-28 2020-03-04
 United States SARS-CoV-2/human/USA/WA4-UW2/2020
 ATTAAA1- C8782T C17747T A17858G C18060T T28144C TG29867AA C29870A

EPI_ISL_413488 MT582499
 2020-02-28 2020-03-05
 Germany SARS-CoV-2/human/DEU/NRW-01/2020
 G1440A G2891A C4655T G8422A C22323T C29546A

EPI_ISL_413557 MT419829
 2020-02-28 2020-03-07
 United States SARS-CoV-2/human/USA/CA-CDPH-UC1/2020
 C5184T C8782T C17747T A17858G C18060T T28144C C29253T

EPI_ISL_413560 MT598634
 2020-02-28 2020-03-07
 United States SARS-CoV-2/human/USA/WA-S3/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_413594
 2020-02-28 2020-03-08
 Australia hCoV-19/Australia/NSW08/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- G25323T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_413595
 2020-02-28 2020-03-09
 Australia hCoV-19/Australia/NSW09/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C884T G1397A G8653T G11083T C24381T G28457A T28688C C29627T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_413596
 2020-02-28 2020-03-08
 Australia hCoV-19/Australia/NSW10/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- T18351Y G25323T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_414006
 2020-02-28 2020-03-10
 United Kingdom hCoV-19/England/200990724/2020
 A2480G C2558T C14805T T21072C G26144T

EPI_ISL_414007
 2020-02-28 2020-03-10
 United Kingdom hCoV-19/England/200990725/2020
 A2480G C2558T C14805T T21072C G26144T

EPI_ISL_414509 MT582491
 2020-02-28 2020-03-13
 Germany SARS-CoV-2/human/DEU/NRW-09/2020
 G1440A G2891A C27849T

EPI_ISL_414522
 2020-02-28 2020-03-13
 United Kingdom hCoV-19/England/200990002/2020
 G1397A A3263G A8981G G9479T A9514G T9931C T28688C G29742T

EPI_ISL_415454
 2020-02-28 2020-03-17
 Switzerland hCoV-19/Switzerland/GE1422/2020
 ATTAAAG1- C241T C3037T C10834T C14408T A23403G GGG28881AAC T29148C

EPI_ISL_415455
 2020-02-28 2020-03-17
 Switzerland hCoV-19/Switzerland/GE0199/2020
 ATTAAAGGTTT1- C241T C3037T C14408T T19839C A23403G GGG28881AAC

EPI_ISL_415700
 2020-02-28 2020-03-19
 Switzerland hCoV-19/Switzerland/GE1402/2020
 ATTAAAGGTTTAT1- C241T C3037T C14408T A23403G GGG28881AAC T29148C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416143
 2020-02-28 2020-03-20
 Denmark hCoV-19/Denmark/SSI-02/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C3037T T13402G C14408T A23403G GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_417093 MT627286
 2020-02-28 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S40/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417095 MT627295
 2020-02-28 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S42/2020
 C5784T C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417097 MT627275
 2020-02-28 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S44/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417147 MT627258
 2020-02-28 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S94/2020
 C8782T C14805T C17747T A17858G C18060T T28144C

EPI_ISL_417148 MT627235
 2020-02-28 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S95/2020
 C1326T C8782T C17304T C17747T A17858G C18060T T28144C

EPI_ISL_417149 MT627226
 2020-02-28 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S96/2020
 C1326T C8782T C17304T C17747T A17858G C18060T T28144C

EPI_ISL_417150 MT627219
 2020-02-28 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S97/2020
 C8782T C17304T C17747T A17858G C18060T T28144C

EPI_ISL_417152 MT627318
 2020-02-28 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S99/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417154 MT627290
 2020-02-28 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S101/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417155 MT627274
 2020-02-28 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S102/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417156 MT627253
 2020-02-28 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S103/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417158 MT627252
 2020-02-28 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S105/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417922 MT527178
 2020-02-28 2020-03-27
 Italy SARS-CoV-2/human/ITA/INMI4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATC1- C241T C3037T C14408T A23403G GGG28881AAC TGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29809-

EPI_ISL_418220
 2020-02-28 2020-03-29
 France hCoV-19/France/HF1645/2020
 C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_418243
 2020-02-28 2020-03-29
 Spain hCoV-19/Spain/Andalucia201272/2020
 G11083T C14805T C23707T G26144T T27384C AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_418382
 2020-02-28 2020
 Canada hCoV-19/Canada/ON_PHL5930/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C3037T C14408T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418799
 2020-02-28 2020-03-31
 Australia hCoV-19/Australia/QLDID922/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C15324T A15477G T21644C C24130T C29303T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_418995
 2020-02-28 2020-04-01
 Singapore hCoV-19/Singapore/12Clin/2020
 C8782T C25568A ACTTGAACTGCAAGATCATAATGAAACTTGTCACGCCTAAACGAACATGAAATTTCTTGTTTTCTTAGGAATCATCACAACTGTAGCTGCATTTCACCAAGAATGTAGTTTACAGTCATGTACTCAACATCAACCATATGTAGTTGATGACCCGTGTCCTATTCACTTCTATTCTAAATGGTATATTAGAGTAGGAGCTAGAAAATCAGCACCTTTAATTGAATTGTGCGTGGATGAGGCTGGTTCTAAATCACCCATTCAGTACATCGATATCGGTAATTATACAGTTTCCTGTTTACCTTTTACAATTAATTGCCAGGAACCTAAATTGGGTAGTCTTGTAGTGCGTTGTTCGTTCTATGAAGACTTTTTAGAGTATCAT27848- AAAAAAAAAAAA29892-

EPI_ISL_419553 MT276323
 2020-02-28 2020-04-02
 United States SARS-CoV-2/human/USA/RI_0520/2020
 C241T C3037T C3369T C6190T C14408T A20268G A23403G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_419559 MT276329
 2020-02-28 2020-04-02
 United States SARS-CoV-2/human/USA/FL_5125/2020
 C241T C313T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_419560 MT276330
 2020-02-28 2020-04-02
 United States SARS-CoV-2/human/USA/FL_5091/2020
 A5995G C8782T C16457T A17858G C18060T C22480T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_420135
 2020-02-28 2020-04-05
 Norway hCoV-19/Norway/1455/2020
 ATTAAAGGTT1- T7876A G11083T T22392Y A22404W G22454R G22462K G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_425178
 2020-02-28 2020-04-14
 Spain hCoV-19/Spain/Valencia54/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_430272 MT632567
 2020-02-28 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S234/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_437994
 2020-02-28 2020-05-12
 Austria hCoV-19/Austria/CeMM0146/2020
 C241T C3037T G12832A C14408T A23403G GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_437995
 2020-02-28 2020-05-12
 Austria hCoV-19/Austria/CeMM0147/2020
 C241T G2447K C3037T G12832A C14408T G14701K C14703Y T22521K A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_452139
 2020-02-28 2020-05-26
 Mexico hCoV-19/Mexico/CDMX-InDRE_07/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23403G GGG28881AAC TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_454751
 2020-02-28 2020-05-29
 Netherlands hCoV-19/Netherlands/NoordHolland_10002/2020
 ATTA1- C241T C3037T A6314T T7570C A10018T C14408T G15392A A23403G GGG28881AAC T29148C GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_454752
 2020-02-28 2020-05-29
 Netherlands hCoV-19/Netherlands/NoordBrabant_10003/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- T514C ATG1605- C17410T G25116T AAAAAAAAAAAAAAAAAAAA29884-

EPI_ISL_454753
 2020-02-28 2020-05-29
 Netherlands hCoV-19/Netherlands/ZuidHolland_10004/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C3037T C14408T A23403G GGG28881AAC TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_454754
 2020-02-28 2020-05-29
 Netherlands hCoV-19/Netherlands/ZuidHolland_10005/2020
 ATTAAA1- C241T C3037T C14408T A18172T A23403G GGG28881AAC AAAAAA29898-

EPI_ISL_454922
 2020-02-28 2020-05-29
 China hCoV-19/Wuhan/HB-WH2-152/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- T25382C

EPI_ISL_454923
 2020-02-28 2020-05-29
 China hCoV-19/Wuhan/HB-WH2-155/2020
 G10412T A18114G T25382C

EPI_ISL_454924
 2020-02-28 2020-05-29
 China hCoV-19/Wuhan/HB-WH2-156/2020
 C17894T G25074T

EPI_ISL_454925
 2020-02-28 2020-05-29
 China hCoV-19/Wuhan/HB-WH2-157/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- G6622T G10412T ATA17609- C22482T

EPI_ISL_454926
 2020-02-28 2020-05-29
 China hCoV-19/Wuhan/HB-WH2-158/2020
 C9534A A17423G C28854T

EPI_ISL_454927
 2020-02-28 2020-05-29
 China hCoV-19/Wuhan/HB-WH2-159/2020
 G10412T

EPI_ISL_454928
 2020-02-28 2020-05-29
 China hCoV-19/Wuhan/HB-WH2-160/2020
 

EPI_ISL_454929
 2020-02-28 2020-05-29
 China hCoV-19/Wuhan/HB-WH2-161/2020
 AAGATTTTC729- G3013T C8529T C17690T

EPI_ISL_454939
 2020-02-28 2020-05-29
 China hCoV-19/Wuhan/HB-WH3-173/2020
 AAGATTTTC729- G3013T C22482T

EPI_ISL_454940
 2020-02-28 2020-05-29
 China hCoV-19/Wuhan/HB-WH3-176/2020
 

EPI_ISL_454993
 2020-02-28 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM-113/2020
 G26144T

EPI_ISL_455314
 2020-02-28 2020-05-29
 Spain hCoV-19/Spain/Andalucia201257/2020
 AT1- C6449T C8782T TG8827AT C16267T G16507T A19659G A20264C T28144C

EPI_ISL_455373
 2020-02-28 2020-05-29
 China hCoV-19/Wuhan/HB-WH2-154/2020
 G18412- T26330C

EPI_ISL_455376
 2020-02-28 2020-05-29
 China hCoV-19/Wuhan/HB-WH3-174/2020
 C8782T C19154T C26447G T28144C T28250G A28254- C29095T G29179T

EPI_ISL_460080
 2020-02-28 2020-06-05
 Italy hCoV-19/Italy/BG-11639-28Feb/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T A2342G C3037T C14408T A23403G GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_460090
 2020-02-28 2020-06-05
 Italy hCoV-19/Italy/LO-11550-28Feb/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T C17676T A23403G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_460092
 2020-02-28 2020-06-05
 Italy hCoV-19/Italy/PV-11951-28Feb/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A20268G A23403G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_464199
 2020-02-28 2020-06-11
 United Kingdom hCoV-19/England/20099000304/2020
 G1397A G11083T C12249Y C21658T T28688C G29742T

EPI_ISL_464201
 2020-02-28 2020-06-11
 United Kingdom hCoV-19/England/20099000804/2020
 C7735Y G11083T C20956Y C22432G C25521Y C27735Y C28253Y

EPI_ISL_464219
 2020-02-28 2020-06-11
 United Kingdom hCoV-19/England/20099071804/2020
 C241T C3037T C14408T G19406A A23403G

EPI_ISL_464224
 2020-02-28 2020-06-11
 United Kingdom hCoV-19/England/20099072604/2020
 A2480G C2558T G11083T C14805T T21072C G22427R G26144T

EPI_ISL_464228
 2020-02-28 2020-06-11
 United Kingdom hCoV-19/England/20099089504/2020
 G1397A C2881Y G4866A A9514G G11083T A17799G T28688C G29742T

EPI_ISL_469253 MT627325
 2020-02-28 2020-06-16
 China SARS-CoV-2/human/CHN/Shanghai_CH-02/2020
 ATTAAAG1- C14676T C19884T C23525T C28826T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_475545
 2020-02-28 2020-06-23
 Sweden hCoV-19/Sweden/20-04850/2020
 G1397A A7970G G14653A C18788T T28688C G29742T

EPI_ISL_475546
 2020-02-28 2020-06-23
 Sweden hCoV-19/Sweden/20-04851/2020
 G1397A A7970G G14653A C18788T T28688C G29742T

EPI_ISL_475547
 2020-02-28 2020-06-23
 Sweden hCoV-19/Sweden/20-04852/2020
 G1397A A7970G G14653A C18788T T28688C G29742T

EPI_ISL_475836
 2020-02-28 2020-06-25
 Austria hCoV-19/Austria/CeMM0401/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10039T G12832A C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479803
 2020-02-28 2020-07-01
 Japan hCoV-19/Japan/PG-0033/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C11752T TAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29817-

EPI_ISL_479829
 2020-02-28 2020-07-01
 Japan hCoV-19/Japan/PG-0076/2020
 ATTAAAGGTTT1- C11752T C19170A AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_479830
 2020-02-28 2020-07-01
 Japan hCoV-19/Japan/PG-0077/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C11752T C19170A ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_479913
 2020-02-28 2020-07-01
 Japan hCoV-19/Japan/PG-0213/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- T4402C G5062T C8782T T28144C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_506950
 2020-02-28 2020-08-02
 South Korea hCoV-19/Korea/KCDC2156/2020
 ATTAAA1- G256T G5572T G11083T C14805T C21575T G26144T C29098T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_506952
 2020-02-28 2020-08-02
 South Korea hCoV-19/Korea/KCDC2158/2020
 ATTA1- G256T G5572T G11083T C14805T C21575T G26144T C29098T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_506953
 2020-02-28 2020-08-02
 South Korea hCoV-19/Korea/KCDC2159/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- G256T G5572T G11083T C14805T T20177C C21575T G26144T C29098T

EPI_ISL_508933
 2020-02-28 2020-08-04
 France hCoV-19/France/ARA05288/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAA1- C241T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_516084 MT483875
 2020-02-28 2020-05-19
 Italy SARS-CoV-2/human/ITA/73696/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T C3037T C14408T A23403G A26530G GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_516085 MT483881
 2020-02-28 2020-05-19
 Italy SARS-CoV-2/human/ITA/73702/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C1302Y C3037T C14408T T21765W A23403G A26530G GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_530024
 2020-02-28 2020-09-10
 Spain hCoV-19/Spain/MD-H12-98/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_537558
 2020-02-28 2020-09-16
 United States hCoV-19/USA/CA-UCLA-260/2020
 ATTAAAGGTTTAT1- C313T G1397A C7594A G11083T G20238T T28688C G29742T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_539497
 2020-02-28 2020-09-18
 Spain hCoV-19/Spain/AN-ISCIII-201273/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A436C C8438T A8445T A8456T A8472G G8491A G11083T C14805T G19620A C21263T C23707T C26088T A26108G GAAT29864-

EPI_ISL_539557
 2020-02-28 2020-09-18
 Spain hCoV-19/Spain/EX-ISCIII-201239/2020
 C241T C3037T C8319T C14408T T19597A A19673G A22168G A23403G A26530G

EPI_ISL_539558
 2020-02-28 2020-09-18
 Spain hCoV-19/Spain/EX-ISCIII-201248/2020
 C6449T T16324C TT16478AC G16745A C16792T C22444T C26088T T28144C

GWHAORF01000001
 2020-02-28 2020-09-11
 China SARS-CoV-2/human/CHN/Beijing-P3.1/2020
 G13617T G26144T

MT126808
 2020-02-28 2020-03-01
 Brazil SARS-CoV-2/human/BRA/SP02/2020
 G11083T C14805T T17247C G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_413021
 2020-02-29 2020-03-03
 Switzerland hCoV-19/Switzerland/1000477757/2020
 C241T C959T C3037T C5812Y G10265A C14408T A23403G T27618C GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_413022
 2020-02-29 2020-03-03
 Switzerland hCoV-19/Switzerland/1000477796/2020
 C241T C3037T C14408T A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_413023
 2020-02-29 2020-03-03
 Switzerland hCoV-19/Switzerland/1000477797/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C313T C3037T C14408T A22168C A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_413024
 2020-02-29 2020-03-03
 Switzerland hCoV-19/Switzerland/1000477806/2020
 C241T C3037T C13647Y C14408T T19839C A23403G G26227K GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_413213
 2020-02-29 2020-03-04
 Australia hCoV-19/Australia/NSW06/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C884T G1397A G8653T G11083T C24904T T28688C G29742T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_413214
 2020-02-29 2020-03-04
 Australia hCoV-19/Australia/NSW07/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1397A G11083T T28688C G29374A G29742T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_413457 MT163718
 2020-02-29 2020-03-05
 United States SARS-CoV-2/human/USA/WA6-UW3/2020
 A1T TAAA3GGTT C20S C8782T C17747T A17858G C18060T T28144C

EPI_ISL_413593
 2020-02-29 2020-03-07
 Luxembourg hCoV-19/Luxembourg/Lux1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T C14408T A23403G C23575T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_414015
 2020-02-29 2020-03-10
 Brazil hCoV-19/Brazil/SPBR-06/2020
 ATTA1- C241T C3037T C14408T A23403G AAAAAAAAAAAAA29891-

EPI_ISL_414016
 2020-02-29 2020-03-10
 Brazil hCoV-19/Brazil/SPBR-05/2020
 C241T C3037T C14408T A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_414414
 2020-02-29 2020-03-12
 Australia hCoV-19/Australia/QLD09/2020
 ATTAAA1- G1397A C11074T G11083T T28688C G29374A G29742T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_414476 MT370904
 2020-02-29 2020-03-12
 United States SARS-CoV-2/human/USA/NY1-PV08001/2020
 G1397A G3242A A9514G G11083T C25214T T28688C G29027T G29742T

EPI_ISL_414626
 2020-02-29 2020-03-15
 France hCoV-19/France/HF1684/2020
 C241T C2416T C3037T C14408T A23403G G25563T

EPI_ISL_415128
 2020-02-29 2020-03-16
 Brazil hCoV-19/Brazil/ES-225/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A2480G C2558T C4423T G11083T C14805T G26144T TGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29793-

EPI_ISL_415129
 2020-02-29 2020-03-16
 United Kingdom hCoV-19/England/20099038206/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_415159
 2020-02-29 2020-03-16
 Belgium hCoV-19/Belgium/BA-02291/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1666C C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_415456
 2020-02-29 2020-03-17
 Switzerland hCoV-19/Switzerland/BE6651/2020
 ATTA1- C241T C3037T C6861T C14408T T19839C A23403G GGG28881AAC

EPI_ISL_415457
 2020-02-29 2020-03-17
 Switzerland hCoV-19/Switzerland/AG7120/2020
 ATTAAAG1- C241T C3037T C14408T A23403G GGG28881AAC T29148C

EPI_ISL_415459
 2020-02-29 2020-03-17
 Switzerland hCoV-19/Switzerland/VD0503/2020
 ATTAAAGGTTT1- C241T C3037T G13503T C14408T A23403G GGG28881AAC

EPI_ISL_416460 MT598640
 2020-02-29 2020-03-22
 United States SARS-CoV-2/human/USA/WA-S5/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_416461 MT598639
 2020-02-29 2020-03-22
 United States SARS-CoV-2/human/USA/WA-S6/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_416465 MT598641
 2020-02-29 2020-03-22
 United States SARS-CoV-2/human/USA/WA-S10/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_416742
 2020-02-29 2020-03-23
 Czech Republic hCoV-19/Czech Republic/ChVir1630/2020
 ATTAAAGGTTTATAC1- C241T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_417098 MT627307
 2020-02-29 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S45/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417099 MT627299
 2020-02-29 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S46/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417100 MT627267
 2020-02-29 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S47/2020
 C5784T C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417101 MT627279
 2020-02-29 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S48/2020
 C5784T C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417108 MT627293
 2020-02-29 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S55/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417142 MT627233
 2020-02-29 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S89/2020
 C8782T C15240T C17747T A17858G C18060T C21774T T28144C

EPI_ISL_417143 MT627243
 2020-02-29 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S90/2020
 C8782T C15240T C17747T A17858G C18060T C21774T T28144C

EPI_ISL_417145 MT627261
 2020-02-29 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S92/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417146 MT627269
 2020-02-29 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S93/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417151 MT627248
 2020-02-29 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S98/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417153 MT627315
 2020-02-29 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S100/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417159 MT627216
 2020-02-29 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S106/2020
 C5622T C8782T C17747T A17858G C18060T T23010C T28144C

EPI_ISL_417160 MT627245
 2020-02-29 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S107/2020
 C8782T C17747T A17858G C18060T T23010C T28144C

EPI_ISL_417161 MT627304
 2020-02-29 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S108/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417168 MT627312
 2020-02-29 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S115/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417172 MT627242
 2020-02-29 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S119/2020
 C8782T G14638T C17747T A17858G C18060T T28144C

EPI_ISL_417318 MT419841
 2020-02-29 2020-03-25
 United States SARS-CoV-2/human/USA/CA-SCCPHD-UC14/2020
 G29711T

EPI_ISL_417488
 2020-02-29 2020-03-26
 Norway hCoV-19/Norway/1493/2020
 ATTAAAGGTT1- T7876A G11083T G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_418344
 2020-02-29 2020
 Canada hCoV-19/Canada/ON_PHL2259/2020
 A1- C241T C3037T C14408T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418345
 2020-02-29 2020-02-29
 Canada hCoV-19/Canada/ON_PHL8751/2020
 A1- C241T C3037T C14408T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_419556 MT276326
 2020-02-29 2020-04-02
 United States SARS-CoV-2/human/USA/GA_2741/2020
 C241T C3037T C14408T G18898T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_419557 MT276327
 2020-02-29 2020-04-02
 United States SARS-CoV-2/human/USA/GA_2742/2020
 C241T C3037T C14408T G18898T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_420791 MT304484
 2020-02-29 2020-04-06
 United States SARS-CoV-2/human/USA/NH_0004/2020
 C241T C1059T C3037T T13006C C14408T A23403G G25563T C25688T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_420796 MT304489
 2020-02-29 2020-04-06
 United States SARS-CoV-2/human/USA/TX_2039/2020
 C367Y G1785K C5208Y C9195Y C10747Y G10916K G11083T C12830Y C20703Y T22333Y C23492Y C29353T C29546T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_420800 MT304475
 2020-02-29 2020-04-06
 South Korea SARS-CoV-2/human/KOR/BA-ACH_2718/2020
 G5572T G11083T C14805T G26144T C28311T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_420801 MT304476
 2020-02-29 2020-04-06
 South Korea SARS-CoV-2/human/KOR/BA-ACH_2719/2020
 G5572T G11083T C14805T G26144T C28311T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_430135 MT627625
 2020-02-29 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S281/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_430160 MT632605
 2020-02-29 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S123/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_430273 MT632612
 2020-02-29 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S235/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_430281 MT632545
 2020-02-29 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S243/2020
 C8782T C17747T A17858G C18060T T28144C C28957T

EPI_ISL_430441
 2020-02-29 2020-04-27
 Malaysia hCoV-19/Malaysia/IMR_WC1097/2020
 ATTA1- A29881T AAAA29884TGCC A29889G A29891GTGTCTT A29893T A29897GTCTCT AA29902GGCCGGGCGCAGTGGC

EPI_ISL_430442
 2020-02-29 2020-04-27
 Malaysia hCoV-19/Malaysia/IMR_WC1098/2020
 ATTAAAGGTTT1- ATCAGACTCAGACTA23583- AAA29872GTG AA29877TG AAAAA29880TTGTG AAAA29886GCTT AA29892CC AAAAA29897TGGTG A29903CTCCAATTGC

EPI_ISL_430469
 2020-02-29 2020-04-27
 Greece hCoV-19/Greece/127_HPI/2020
 C241T C3037T C14408T A23403G G29868R AAAAAAAAAAAA29892-

EPI_ISL_435583
 2020-02-29 2020-05-05
 United States hCoV-19/USA/CA-SCCPHD-UC104/2020
 C241T C3037T C14408T C18877T A23403G G25563T

EPI_ISL_435587
 2020-02-29 2020-05-05
 United States hCoV-19/USA/CA-SCCPHD-UC108/2020
 G14718T C23430T

EPI_ISL_444274 MT479223
 2020-02-29 2020-05-13
 Taiwan SARS-CoV-2/human/TWN/CGMH-CGU-21/2020
 ATT1- C1059T G1397A C7521T G11083T A12555C C23606T C23934T T28648C T28688C G29742T

EPI_ISL_452332
 2020-02-29 2020-05-27
 China hCoV-19/Beijing/DT-travelUSA01/2020
 

EPI_ISL_455326
 2020-02-29 2020-05-29
 Spain hCoV-19/Spain/Canarias201939/2020
 C241T C3037T T4579A A6466G G10447A C14408T A23403G G25444T GGG28881AAC CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

EPI_ISL_455336
 2020-02-29 2020-05-29
 Spain hCoV-19/Spain/LaRioja201277/2020
 C8782T T9477A C14805T G24040T G25979T T28144C C28657T C28863T ATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29677-

EPI_ISL_455350
 2020-02-29 2020-05-29
 Spain hCoV-19/Spain/PaisVasco201385/2020
 A3765G G8353T G8553T C8782T T9477A C14805T T23926G C23934A TA24071CT G25979T T28144C C28657T C28863T T29840C TG29842AT T29846C TA29848GC T29851G CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_455351
 2020-02-29 2020-05-29
 Spain hCoV-19/Spain/PaisVasco201388/2020
 T8586A C8782T T9477A C14805T G25979T T28144C C28657T C28863T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_455793
 2020-02-29 2020-06-01
 Malaysia hCoV-19/Malaysia/IMR_WC1114/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- G677A G15689A T21408C G23607A TCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29834-

EPI_ISL_460084
 2020-02-29 2020-06-05
 Italy hCoV-19/Italy/BS-12256-29Feb/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A20268G A23403G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_461101
 2020-02-29 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_666/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- C17410T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_464212
 2020-02-29 2020-06-11
 United Kingdom hCoV-19/England/20099068604/2020
 G1397A A3263G A8981G G9479T A9514G T9931C G11083T T28688C G29742T

EPI_ISL_464215
 2020-02-29 2020-06-11
 United Kingdom hCoV-19/England/20099069504/2020
 C241T C3037T C14408T A23403G C25350T

EPI_ISL_464217
 2020-02-29 2020-06-11
 United Kingdom hCoV-19/England/20099070104/2020
 C11074T G11083T C14805T T17247C G26144T

EPI_ISL_479804
 2020-02-29 2020-07-01
 Japan hCoV-19/Japan/PG-0036/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCT1- C11752T TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_488388
 2020-02-29 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F565/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C25350T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_506951
 2020-02-29 2020-08-02
 South Korea hCoV-19/Korea/KCDC2157/2020
 ATTAAAGGTTTATA1- C16A G256T G5572T G11083T C14805T C21575T G26144T C29098T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_525575
 2020-02-29 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-10131-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- G1397A G3242A A9514G G11083T C25214T C27657T T28688C G29027T G29742T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_530025
 2020-02-29 2020-09-10
 Spain hCoV-19/Spain/MD-LP100-1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3990T C14408T A20268G A23403G G29734C ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_416741
 2020-02-xx 2020-03-23
 Lithuania hCoV-19/Lithuania/ChVir1632/2020
 ATTAAAGGTTT1- C241T C3037T C14408T A23403G A26530G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_434561
 2020-02-xx 2020-04-22
 Japan hCoV-19/Japan/TKYE6968/2020
 C1997T C8782T C27503T T28144C

EPI_ISL_447608 MT358638 MT539726
 2020-02-xx 2020-04-17
 Germany SARS-CoV-2/human/DEU/FFM1/2020
 G3518T G12704T G12797A A17423G T27272C C28854T

EPI_ISL_447609 MT358639
 2020-02-xx 2020-04-17
 Germany SARS-CoV-2/human/DEU/FFM3/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_447610 MT358640
 2020-02-xx 2020-04-17
 Germany SARS-CoV-2/human/DEU/FFM4/2020
 C241T C3037T A6228G C14408T C16289Y A23403G GGG28881AAC C28961T C29870M

EPI_ISL_447611 MT358641
 2020-02-xx 2020-04-17
 Germany SARS-CoV-2/human/DEU/FFM5/2020
 G1440A G2891A A23235G

EPI_ISL_447612 MT358642
 2020-02-xx 2020-04-17
 Germany SARS-CoV-2/human/DEU/FFM6/2020
 C241T C3037T A6228G C14408T A23403G GGG28881AAC C29870M

EPI_ISL_447613 MT358643
 2020-02-xx 2020-04-17
 Germany SARS-CoV-2/human/DEU/FFM7/2020
 C241T C3037T C14408T C15324T C23179Y A23403G

EPI_ISL_450210 MT270113
 2020-02-xx 2020-03-28
 Germany SARS-CoV-2/human/DEU/BavPat16-ChVir1530/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTG1- C241T C3037T G6446A A23403G GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_450211 MT270114
 2020-02-xx 2020-03-28
 Germany SARS-CoV-2/human/DEU/BavPat15-ChVir1484-ChVir1536/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A5714G A9019R T15152Y C17410T A17635R T20020Y A23403G C25466T A28549R CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_463220
 2020-02-xx 2020-06-10
 Canada hCoV-19/Canada/BC_25367465/2020
 A187G C241T C1616T C3037T C14408T A23403G C29311T

EPI_ISL_468724 LC553269
 2020-02-xx 2020-06-03
 Japan TKYE6938_2020
 ATTAAAGGTTTATA1- G11083T

EPI_ISL_479792
 2020-02-xx 2020-07-01
 Japan hCoV-19/Japan/PG-0003/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- A6561G C11752T C19170A TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_479793
 2020-02-xx 2020-07-01
 Japan hCoV-19/Japan/PG-0004/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C11752T C19170A ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_479794
 2020-02-xx 2020-07-01
 Japan hCoV-19/Japan/PG-0005/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C11752T C19170A ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_479795
 2020-02-xx 2020-07-01
 Japan hCoV-19/Japan/PG-0006/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACT1- C11752T C19170A A29433G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479796
 2020-02-xx 2020-07-01
 Japan hCoV-19/Japan/PG-0009/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C1059T C3037T C14408T A23403G G25563T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_479801
 2020-02-xx 2020-07-01
 Japan hCoV-19/Japan/PG-0022/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C11752T C19170A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479809
 2020-02-xx 2020-07-01
 Japan hCoV-19/Japan/PG-0045/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- G5008T C8782T G16381A T17877C T28144C G28878A G29742A TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_479810
 2020-02-xx 2020-07-01
 Japan hCoV-19/Japan/PG-0046/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- G5008T C8782T G16381A T17877C T28144C G28878A G29742A ATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29833-

EPI_ISL_479811
 2020-02-xx 2020-07-01
 Japan hCoV-19/Japan/PG-0048/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- G5008T C8782T T9093C G16381A T17877C C19269T T28144C G28878A G29742A AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_479825
 2020-02-xx 2020-07-01
 Japan hCoV-19/Japan/PG-0068/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T4351C G11083T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_479865
 2020-02-xx 2020-07-01
 Japan hCoV-19/Japan/PG-0143/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G1458T T7153C GG28903CT CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_479866
 2020-02-xx 2020-07-01
 Japan hCoV-19/Japan/PG-0144/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- G1458T G22632A GG28903CT CTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29803-

EPI_ISL_479867
 2020-02-xx 2020-07-01
 Japan hCoV-19/Japan/PG-0145/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- G1458T GG28903CT TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_507039
 2020-02-xx 2020-08-03
 South Korea hCoV-19/South Korea/CBNU-nCoV01/2020
 TA3CG -7AGTTGGTT T3086C C6255T C8782T G11083T G17122A T28144C -29865A AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

LC542976
 2020-02-xx 2020-04-20
 Japan TKYE6968_2020
 C1997T C8782T C27503T T28144C

MT276597
 2020-02-xx 2020-04-02
 Israel SARS-CoV-2/human/ISR/ISR_JP0320/2020
 ATTAAAGGTTTATACCTTCC1- CA21GG G11083T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871C

EPI_ISL_413458 MT163719
 2020-03-01 2020-03-05
 United States SARS-CoV-2/human/USA/WA7-UW4/2020
 C8782T C17747T A17858G C18060T T20281C T28144C

EPI_ISL_413486 MT163720
 2020-03-01 2020-03-05
 United States SARS-CoV-2/human/USA/WA8-UW5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAAC1- A3406C C5784T C8782T C17747T A17858G C18060T C23525T T28144C

EPI_ISL_413572 LR878224
 2020-03-01 2020-03-07
 Netherlands hCoV-19/Netherlands/Haarlem_1363688/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C1059T T1666C C3037T C14408T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_413582 LR878241
 2020-03-01 2020-03-07
 Netherlands hCoV-19/Netherlands/Rotterdam_1363790/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- ATG1605- C12621T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_413589 LR878358
 2020-03-01 2020-03-07
 Netherlands hCoV-19/Netherlands/Utrecht_1363628/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T G2527T C3037T C6428T G11083T C14408T A23403G A25575C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_413647
 2020-03-01 2020-03-09
 Portugal hCoV-19/Portugal/CV62/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_413648
 2020-03-01 2020-03-09
 Portugal hCoV-19/Portugal/CV63/2020
 C241T C3037T C14408T A23403G C29144T

EPI_ISL_414023
 2020-03-01 2020-03-10
 Switzerland hCoV-19/Switzerland/VD5615/2020
 ATTAAAGGTTT1- C241T C3037T G13503T C14408T A23403G GGG28881AAC A29903-

EPI_ISL_414524
 2020-03-01 2020-03-13
 United Kingdom hCoV-19/England/200991076/2020
 C241T C3037T C14408T C16949Y A23403G A26530G G28739T

EPI_ISL_415154
 2020-03-01 2020-03-16
 Belgium hCoV-19/Belgium/BM-03012/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_415155
 2020-03-01 2020-03-16
 Belgium hCoV-19/Belgium/VAG-03013/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C20148T A23403G A26530G C28826T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_415156
 2020-03-01 2020-03-16
 Belgium hCoV-19/Belgium/SH-03014/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T15504G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_415157
 2020-03-01 2020-03-16
 Belgium hCoV-19/Belgium/BC-03016/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_415158
 2020-03-01 2020-03-16
 Belgium hCoV-19/Belgium/QKJ-03015/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A13947T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_415458
 2020-03-01 2020-03-17
 Switzerland hCoV-19/Switzerland/GE8102/2020
 ATTAAA1- C241T C313T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_415581
 2020-03-01 2020-03-18
 Canada hCoV-19/Canada/BC_02421/2020
 G1397A G11083T C19484T T28688C G29742T

EPI_ISL_415703
 2020-03-01 2020-03-19
 Switzerland hCoV-19/Switzerland/TI2045/2020
 ATTAAAG1- C241T C3037T C12357T C14408T A23403G GGG28881AAC

EPI_ISL_416144
 2020-03-01 2020-03-20
 Denmark hCoV-19/Denmark/SSI-03/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C7392T C14408T A23403G GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_416503
 2020-03-01 2020-03-22
 France hCoV-19/France/B2334/2020
 C3987T G5357T G11083T G20887A G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_417086 MT627244
 2020-03-01 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S33/2020
 C8782T C17747T A17858G C18060T T28144C T28976C

EPI_ISL_417139 MT627246
 2020-03-01 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S86/2020
 C8782T C17747T A17858G C18060T T23010C T28144C

EPI_ISL_417140 MT627225
 2020-03-01 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S87/2020
 C8782T C17747T A17858G C18060T T20281C T28144C

EPI_ISL_417141 MT627287
 2020-03-01 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S88/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417162 MT627298
 2020-03-01 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S109/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417171 MT627254
 2020-03-01 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S118/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417236
 2020-03-01 2020-03-25
 United Kingdom hCoV-19/England/20104015302/2020
 C241T C3037T A11755R C14408T C20031M A23403G C27046T GGG28881RRS

EPI_ISL_417418
 2020-03-01 2020-03-25
 Italy hCoV-19/Italy/FVG/ICGEB_S1/2020
 C241T C3037T C14408T A23403G -29904AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

EPI_ISL_417419
 2020-03-01 2020-03-25
 Italy hCoV-19/Italy/FVG/ICGEB_S5/2020
 AT1- C241T C3037T C14408T A23403G G29009A -29904AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

EPI_ISL_417421
 2020-03-01 2020-03-25
 Italy hCoV-19/Italy/FVG/ICGEB_S8/2020
 C241T C3037T C14408T A23403G A29874G A29876G A29882G A29890G A29896G AA29899GG -29904GAGAAAAAAGAAAGAAAAAGAAGAAAAGAGAAAAGGGAAAAGGAAGAGGAAAAGGAGAAAGAGATCGGAAGACG

EPI_ISL_417423
 2020-03-01 2020-03-25
 Italy hCoV-19/Italy/FVG/ICGEB_S9/2020
 A1GGA C241T C3037T C14408T A23403G AAAAAAAAAAAAA29891-

EPI_ISL_417486
 2020-03-01 2020-03-26
 Norway hCoV-19/Norway/1538/2020
 ATTAAAG1- G4142R C7390T G11083T C11833T C15495M G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_417487
 2020-03-01 2020-03-26
 Norway hCoV-19/Norway/1539/2020
 ATTAAAGGTTT1- C7390T G11083T C11833T T20197Y G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_417688
 2020-03-01 2020-03-27
 Iceland hCoV-19/Iceland/12/2020
 C241T C3037T C14408T A23403G C27046T C28344A GGG28881AAC

EPI_ISL_417736
 2020-03-01 2020-03-27
 Iceland hCoV-19/Iceland/14/2020
 C241T C3037T C14408T A23403G G24077T

EPI_ISL_417921 MT525950
 2020-03-01 2020-03-27
 Italy SARS-CoV-2/human/ITA/INMI3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATC1- C241T C3037T C14408T A23403G TGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29809-

EPI_ISL_418245
 2020-03-01 2020-03-01
 Spain hCoV-19/Spain/CastillaLaMancha201328/2020
 C6449T C8782T C26088T T28144C AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_418246
 2020-03-01 2020-03-01
 Spain hCoV-19/Spain/CastillaLaMancha201329/2020
 C6449T C8782T G13617T C26088T T28144C AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_418248
 2020-03-01 2020-03-01
 Spain hCoV-19/Spain/CastillayLeon201323/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_418987
 2020-03-01 2020-03-31
 Belgium hCoV-19/Belgium/CG-030158/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_418999
 2020-03-01 2020-04-01
 Singapore hCoV-19/Singapore/18/2020
 C3426T C8782T ACTTGAACTGCAAGATCATAATGAAACTTGTCACGCCTAAACGAACATGAAATTTCTTGTTTTCTTAGGAATCATCACAACTGTAGCTGCATTTCACCAAGAATGTAGTTTACAGTCATGTACTCAACATCAACCATATGTAGTTGATGACCCGTGTCCTATTCACTTCTATTCTAAATGGTATATTAGAGTAGGAGCTAGAAAATCAGCACCTTTAATTGAATTGTGCGTGGATGAGGCTGGTTCTAAATCACCCATTCAGTACATCGATATCGGTAATTATACAGTTTCCTGTTTACCTTTTACAATTAATTGCCAGGAACCTAAATTGGGTAGTCTTGTAGTGCGTTGTTCGTTCTATGAAGACTTTTTAGAGTATCAT27848- AAAAAAAAAAAA29892-

EPI_ISL_419210 MT276598
 2020-03-01 2020-04-01
 Israel SARS-CoV-2/human/ISR/ISR_IT0320/2020
 A1GGGGGA C241T C313T C3037T C14408T A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_420789 MT304483
 2020-03-01 2020-04-06
 United States SARS-CoV-2/human/USA/IL_1375/2020
 C17249Y C28057Y AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_420790 MT304482
 2020-03-01 2020-04-06
 United States SARS-CoV-2/human/USA/IL_1293/2020
 AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_420794 MT304487
 2020-03-01 2020-04-06
 United States SARS-CoV-2/human/USA/OR_5430/2020
 G11083T C14805T G26144T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_420795 MT304488
 2020-03-01 2020-04-06
 United States SARS-CoV-2/human/USA/RI_0556/2020
 C241T C3037T C14408T A20268G A23403G C27684T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_420797 MT304490
 2020-03-01 2020-04-06
 United States SARS-CoV-2/human/USA/TX_2817/2020
 C241T G932A C3037T C14408T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_420798 MT304491
 2020-03-01 2020-04-06
 United States SARS-CoV-2/human/USA/TX_2967/2020
 C241T C3037T C5663Y C7860Y T11654Y T12122Y C14408T C18877T A23403G G25563T C28315Y AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_430274 MT632597
 2020-03-01 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S236/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_430285 MT632585
 2020-03-01 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S247/2020
 C8782T C17747T A17858G C18060T C20234T T28144C

EPI_ISL_430287 MT632607
 2020-03-01 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S249/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_430793
 2020-03-01 2020-04-27
 Argentina hCoV-19/Argentina/PAIS_A001/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATC1- C241T C1059Y C3037T G13489R C14408T C17165T A20268R A23403G C23731Y T27299C GGG28881AAC T29148Y TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_431101
 2020-03-01 2020-04-29
 India hCoV-19/India/GMC-RK100/2020
 G9479K C15324T A15477G T21644C C24130T C29303T C29870A

EPI_ISL_437604 MT447174
 2020-03-01 2020-05-01
 Thailand SARS-CoV-2/human/THA/SI206377-NST/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- A895G C2942T G4390T C8782T C9598T G20134T G24047A G27877T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_447330
 2020-03-01 2020-05-17
 Israel hCoV-19/Israel/51137031/2020
 C241T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_451308
 2020-03-01 2020-05-24
 Italy hCoV-19/Italy/LO-13075-B/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_451309
 2020-03-01 2020-05-24
 Italy hCoV-19/Italy/LO-13075-N/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_454733 MT531537
 2020-03-01 2020-05-28
 Italy SARS-CoV-2/human/ITA/Siena-1/2020
 AT1- C241T C3037T C14408T T19839C A23403G GGG28881AAC AAAAAA29898-

EPI_ISL_454918
 2020-03-01 2020-05-29
 China hCoV-19/Wuhan/HB-WH1-142/2020
 

EPI_ISL_454955
 2020-03-01 2020-05-29
 China hCoV-19/Wuhan/HB-WH4-205/2020
 

EPI_ISL_454975
 2020-03-01 2020-05-29
 China hCoV-19/Wuhan/HB-WH5-232/2020
 C1060A A7902G G26144T C29518T

EPI_ISL_455337
 2020-03-01 2020-05-29
 Spain hCoV-19/Spain/LaRioja201334/2020
 C8782T T9477A C14805T T17328G A17337T A17346C T21321C T24765C G25979T T28144C C28657T C28863T TATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29832-

EPI_ISL_460085
 2020-03-01 2020-06-05
 Italy hCoV-19/Italy/CR-13221-1Mar/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_464227
 2020-03-01 2020-06-11
 United Kingdom hCoV-19/England/20099089404/2020
 G1397A G4866A A9514G G11083T A17799R T28688C G29742T

EPI_ISL_464334
 2020-03-01 2020-06-11
 United Kingdom hCoV-19/England/201040152/2020
 C241T C3037T A11755G C14408T A23403G C27046T GGG28881AAC

EPI_ISL_464335
 2020-03-01 2020-06-11
 United Kingdom hCoV-19/England/201040154/2020
 C241T C3037T A11755R C14408T C20031M A23403G C27046T GGG28881RRS

EPI_ISL_467161
 2020-03-01 2020-06-12
 Spain hCoV-19/Spain/COV001608/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T C29870A

EPI_ISL_468764
 2020-03-01 2020-06-17
 Spain hCoV-19/Spain/Logrono_h2285/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T

EPI_ISL_479812
 2020-03-01 2020-07-01
 Japan hCoV-19/Japan/PG-0049/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C11752T C19170A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479823
 2020-03-01 2020-07-01
 Japan hCoV-19/Japan/PG-0063/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C37A C8782T G16381A T17877C T28144C G28878A G29742A TTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29820-

EPI_ISL_479914
 2020-03-01 2020-07-01
 Japan hCoV-19/Japan/PG-0214/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- T4402C G5062T C8782T C23185T T28144C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_479915
 2020-03-01 2020-07-01
 Japan hCoV-19/Japan/PG-0215/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- T4402C G5062T C8782T T28144C CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_479916
 2020-03-01 2020-07-01
 Japan hCoV-19/Japan/PG-0216/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- T4402C G5062T C8782T T28144C TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_480050
 2020-03-01 2020-07-01
 Japan hCoV-19/Japan/PG-0381/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G3179A C6982T C8782T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480051
 2020-03-01 2020-07-01
 Japan hCoV-19/Japan/PG-0382/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- G3179A C6982T C8782T T28144C TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_490012 MT755899
 2020-03-01 2020-07-14
 Saudi Arabia SARS-CoV-2/human/SAU/677/2020
 C241T C2644T C3037T C14408T C18877T A22528G A23403G G23755T G25563T T26038C C26735T

EPI_ISL_497997
 2020-03-01 2020-07-26
 South Korea hCoV-19/Korea/KCDC2096/2020
 ATTAAAGGTTTATACC1- G256T G5572T G11083T C14805T C21575T G26144T C29098T AAAA29900-

EPI_ISL_508934
 2020-03-01 2020-08-04
 France hCoV-19/France/ARA0591/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAA1- C241T C3037T C14408T A23403G A26530G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_509712 MT844024
 2020-03-01 2020-08-05
 Belize SARS-CoV-2/human/BLZ/CDC-6846/2020
 C241T C313T C3037T C14408T A23403G G25456T GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_523503
 2020-03-01 2020-08-26
 Netherlands hCoV-19/Netherlands/un-EMC-747/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_524474
 2020-03-01 2020-08-28
 Switzerland hCoV-19/Switzerland/AG-1000477914/2020
 C241T C3037T C14408T A23403G GGG28881AAC T29148C AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_524475
 2020-03-01 2020-08-28
 Switzerland hCoV-19/Switzerland/ZH-1000477916/2020
 ATTAAAGGTTTATACCTTC1- C241T C3037T C14408T C14571Y T15071W A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524782
 2020-03-01 2020-08-28
 Switzerland hCoV-19/Switzerland/ZH-1000477909/2020
 ATTAAA1- C241T C3037T C14408T C20762Y A23403G GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_530026
 2020-03-01 2020-09-10
 Spain hCoV-19/Spain/MD-LP100-2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_535716
 2020-03-01 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00210314/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C506T G1397A C9967T G11083T G14335T C22414T T28688C C28854T G29742T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_535717
 2020-03-01 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00212401/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535718
 2020-03-01 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00213013/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17747T A17858G C18060T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539550
 2020-03-01 2020-09-18
 Spain hCoV-19/Spain/CT-ISCIII-202045/2020
 G11083T C14805T T17247C G26144T ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_539551
 2020-03-01 2020-09-18
 Spain hCoV-19/Spain/CT-ISCIII-202050/2020
 C241T C3037T T5359G C14408T A20268G C23123A A23403G AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

MT415320
 2020-03-01 2020-04-29
 India SARS-CoV-2/human/IND/OUMRK100/2020
 AT1- G9479K C15324T A15477G T21644C C24130T C29303T C29870A

EPI_ISL_413566 LR878232
 2020-03-02 2020-03-07
 Netherlands hCoV-19/Netherlands/Blaricum_1364780/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T C14408T A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_413573 LR878238
 2020-03-02 2020-03-07
 Netherlands hCoV-19/Netherlands/Hardinxveld_Giessendam_1364806/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- T514C ATG1605- C16762T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_413577 LR878236
 2020-03-02 2020-03-07
 Netherlands hCoV-19/Netherlands/Naarden_1364774/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- T514C ATG1605- GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_413580 LR878243
 2020-03-02 2020-03-07
 Netherlands hCoV-19/Netherlands/Oisterwijk_1364072/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- ATG1605- GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_413583 LR878230
 2020-03-02 2020-03-07
 Netherlands hCoV-19/Netherlands/Rotterdam_1364040/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- T514C ATG1605- GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_413590 LR878242
 2020-03-02 2020-03-07
 Netherlands hCoV-19/Netherlands/Utrecht_1364066/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- ATG1605- GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_413591 LR878235
 2020-03-02 2020-03-07
 Netherlands hCoV-19/Netherlands/Zeewolde_1365080/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T C14408T A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_413592
 2020-03-02 2020-03-07
 Taiwan hCoV-19/Taiwan/NTU03/2020
 C241T C3037T C14408T C15857Y C18877T A23403G G25563T G26211K AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_413597
 2020-03-02 2020-03-08
 Australia hCoV-19/Australia/NSW11/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C884T G1397A G8653T G11083T T28688C CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_414014
 2020-03-02 2020-03-10
 Brazil hCoV-19/Brazil/SPBR-03/2020
 ATTAAAGGTTTATACC1- C241T C3037T C14408T A23403G C27046T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_414423 LR878258 LR878325
 2020-03-02 2020-03-12
 Netherlands hCoV-19/Netherlands/Gelderland_1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_414428 LR878231
 2020-03-02 2020-03-12
 Netherlands hCoV-19/Netherlands/NoordBrabant_1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T T514C C3037T C14408T A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_414429 LR878251
 2020-03-02 2020-03-12
 Netherlands hCoV-19/Netherlands/NoordBrabant_3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T C14408T A23403G C27046T C28344A GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_414439 LR878260
 2020-03-02 2020-03-12
 Netherlands hCoV-19/Netherlands/Utrecht_5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_414520
 2020-03-02 2020-03-13
 Germany hCoV-19/Germany/BavPat2/2020
 ATTAAAGG1- G1397A C8880T G9479T A9514G T9931C G11083T T28688C G29742T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_414521
 2020-03-02 2020-03-13
 Germany hCoV-19/Germany/BavPat3/2020
 ATTAAAG1- C8782T G23900C T28144C C29095T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_414525
 2020-03-02 2020-03-13
 United Kingdom hCoV-19/England/201040081/2020
 C241T T1927W C3037T C14408T A23403G

EPI_ISL_414577
 2020-03-02 2020-03-13
 Chile hCoV-19/Chile/Talca-1/2020
 AT1GG A4G AGGT6CATC C8782T C17470T G18907T C26088T T28144C G28580T TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_414627
 2020-03-02 2020-03-15
 France hCoV-19/France/HF1795/2020
 ATTAAA1- T13A G45C C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_414628
 2020-03-02 2020-03-15
 France hCoV-19/France/HF1805/2020
 C241T C3037T C14408T A23403G A24956G G25563T G29868- A29892C A29894C

EPI_ISL_415584
 2020-03-02 2020-03-18
 Canada hCoV-19/Canada/BC_41851/2020
 C8782T A17858G C18060T T28144C G29736T

EPI_ISL_415650
 2020-03-02 2020-03-18
 France hCoV-19/France/IDF2075/2020
 C241T C1059T C3037T C14408T A23403G G25563T G28857A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_415701
 2020-03-02 2020-03-19
 Switzerland hCoV-19/Switzerland/BS0914/2020
 ATTA1- C241T C3037T C14408T T19839C A23403G GGG28881AAC

EPI_ISL_415702
 2020-03-02 2020-03-19
 Switzerland hCoV-19/Switzerland/SZ1417/2020
 ATTAAAGG1- C241T C3037T G11083T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_416140
 2020-03-02 2020-03-20
 Denmark hCoV-19/Denmark/SSI-05/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_416153
 2020-03-02 2020-03-20
 Denmark hCoV-19/Denmark/SSI-04/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- A30T A187G C241T C3037T T13402G C14408T T20891G A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416412 MT450921
 2020-03-02 2020-03-20
 Australia SARS-CoV-2/human/AUS/VIC04/2020
 ATTAAAGGTT1- C884T G1397A G8653T G11083T C12357T C13506T C26447T T28688C G29742T A29865R

EPI_ISL_416458
 2020-03-02 2020-03-22
 Kuwait hCoV-19/Kuwait/KU12/2020
 ATTAAAGGT1- C884T G1397A A3472G C4999Y G8653T G11083T G27613T T28688C G29742T

EPI_ISL_416467
 2020-03-02 2020-03-22
 Belgium hCoV-19/Belgium/MTR-03021/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_416468
 2020-03-02 2020-03-22
 Belgium hCoV-19/Belgium/GMH-03022/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_416470
 2020-03-02 2020-03-22
 Belgium hCoV-19/Belgium/DB-03023/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3130T C3784T T3793C C14408T A23403G A26530G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_416471
 2020-03-02 2020-03-22
 Belgium hCoV-19/Belgium/DBD-03024/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A13947T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_416472
 2020-03-02 2020-03-22
 Belgium hCoV-19/Belgium/UMF-03025/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A13947T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_416476
 2020-03-02 2020-03-22
 Belgium hCoV-19/Belgium/MTR-03026/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_416505
 2020-03-02 2020-03-22
 France hCoV-19/France/B2336/2020
 C241T C1059T C3037T C14408T A23403G G25563T ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_416519
 2020-03-02 2020-03-22
 New Zealand hCoV-19/NewZealand/20VR0189/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_416541
 2020-03-02 2020-03-23
 Kuwait hCoV-19/Kuwait/KU09/2020
 A1- C884T G1397A A2239C G8653T G11083T A20059T A25980C T28688C G29742T

EPI_ISL_416542
 2020-03-02 2020-03-23
 Kuwait hCoV-19/Kuwait/KU17/2020
 ATTAAAGGTT1- G1397A G11083T G14653A T28688C G29742T

EPI_ISL_416543
 2020-03-02 2020-03-23
 Kuwait hCoV-19/Kuwait/KU18/2020
 ATTAAAG1- C884T G1397A C2143A T2241Y C7008M G8653T G11083T C13860T C26882Y T28688C G29742T

EPI_ISL_417068 MT627273
 2020-03-02 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S15/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417072 MT627281
 2020-03-02 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S19/2020
 C8782T C17747T A17858G C18060T T23010C T28144C

EPI_ISL_417073 MT627316
 2020-03-02 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S20/2020
 C8782T C17747T A17858G C18060T T23010C T28144C

EPI_ISL_417074 MT627296
 2020-03-02 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S21/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417075 MT627228
 2020-03-02 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S22/2020
 G2422A C8782T C17747T A17858G C18060T T23010C T28144C

EPI_ISL_417076 MT627231
 2020-03-02 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S23/2020
 G2422A C8782T C17747T A17858G C18060T T23010C T28144C

EPI_ISL_417077 MT627272
 2020-03-02 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S24/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417079 MT627262
 2020-03-02 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S26/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417081 MT627266
 2020-03-02 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S28/2020
 C8782T C17747T A17858G C18060T G22988A T28144C

EPI_ISL_417082 MT627280
 2020-03-02 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S29/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417085 MT627241
 2020-03-02 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S32/2020
 C8782T C17747T A17858G C18060T G22988A T28144C

EPI_ISL_417087 MT627309
 2020-03-02 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S34/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417088 MT627217
 2020-03-02 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S35/2020
 T5941G C11095T C17747T A17858G C18060T G26596T T28144C

EPI_ISL_417089 MT627317
 2020-03-02 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S36/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417112 MT627305
 2020-03-02 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S59/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417144 MT627283
 2020-03-02 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S91/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417169 MT627271
 2020-03-02 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S116/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417170 MT627251
 2020-03-02 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S117/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417175 MT627249
 2020-03-02 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S122/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417226
 2020-03-02 2020-03-25
 United Kingdom hCoV-19/England/20104004902/2020
 C241T C3037T C14408T A23403G C25350T

EPI_ISL_417233
 2020-03-02 2020-03-25
 United Kingdom hCoV-19/England/20104009002/2020
 C241T C3037T C14408T A23403G G24077T

EPI_ISL_417234
 2020-03-02 2020-03-25
 United Kingdom hCoV-19/England/20104009102/2020
 C241T C3037T C14408T C20031A A23403G C27046T GGG28881AAC

EPI_ISL_417235
 2020-03-02 2020-03-25
 United Kingdom hCoV-19/England/20104013703/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_417427
 2020-03-02 2020-03-25
 Belgium hCoV-19/Belgium/VI-03027/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C11412T C14408T A23403G C27046T GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_417428
 2020-03-02 2020-03-25
 Belgium hCoV-19/Belgium/FR-03029/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C5730T C14408T A23403G GGG28881AAC TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_417693
 2020-03-02 2020-03-27
 Iceland hCoV-19/Iceland/25/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_417734
 2020-03-02 2020-03-27
 Iceland hCoV-19/Iceland/22/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_417800
 2020-03-02 2020-03-27
 Iceland hCoV-19/Iceland/15/2020
 C241T C3037T C14408T C23086T A23403G C27046T GGG28881AAC C29095T

EPI_ISL_417817
 2020-03-02 2020-03-27
 Iceland hCoV-19/Iceland/19/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_417840
 2020-03-02 2020-03-27
 Iceland hCoV-19/Iceland/23/2020
 C241T C3037T C14408T A23403G C27046T C28344A GGG28881AAC

EPI_ISL_417981
 2020-03-02 2020-03-27
 Spain hCoV-19/Spain/Madrid_R10_33/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C8782T T9477A C14805T T28144C C28863T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_418207
 2020-03-02 2020-03-29
 Senegal hCoV-19/Senegal/016/2020
 C241T C1059T C3037T T13006C C14408T A23403G G25563T C25688T

EPI_ISL_418241
 2020-03-02 2020-03-29
 Algeria hCoV-19/Algeria/G0638_2264/2020
 C241T C1059T C3037T C10582T C14408T C18115T A23403G G25563T C25777T C26461T C29353T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_418244
 2020-03-02 2020-03-02
 Spain hCoV-19/Spain/Andalucia201373/2020
 ATG1605- C8782T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_418253
 2020-03-02 2020-03-02
 Spain hCoV-19/Spain/PaisVasco201382/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_418986
 2020-03-02 2020-03-31
 Belgium hCoV-19/Belgium/RS-030257/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T T13402G T13408C C14408T A20268G A23403G ACAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_419001
 2020-03-02 2020-04-01
 Singapore hCoV-19/Singapore/19/2020
 C8782T ACTTGAACTGCAAGATCATAATGAAACTTGTCACGCCTAAACGAACATGAAATTTCTTGTTTTCTTAGGAATCATCACAACTGTAGCTGCATTTCACCAAGAATGTAGTTTACAGTCATGTACTCAACATCAACCATATGTAGTTGATGACCCGTGTCCTATTCACTTCTATTCTAAATGGTATATTAGAGTAGGAGCTAGAAAATCAGCACCTTTAATTGAATTGTGCGTGGATGAGGCTGGTTCTAAATCACCCATTCAGTACATCGATATCGGTAATTATACAGTTTCCTGTTTACCTTTTACAATTAATTGCCAGGAACCTAAATTGGGTAGTCTTGTAGTGCGTTGTTCGTTCTATGAAGACTTTTTAGAGTATCAT27848- AAAAAAAAAAAA29892-

EPI_ISL_419679
 2020-03-02 2020-04-03
 Spain hCoV-19/Spain/Valencia15/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T9477A C14805T C21691T G25979T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420037
 2020-03-02 2020-04-04
 Algeria hCoV-19/Algeria/G0860_2262/2020
 C241T C1059T C3037T C5730T C10582T C14408T A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_420099
 2020-03-02 2020-04-05
 Singapore hCoV-19/Singapore/22/2020
 C8782T ACTTGAACTGCAAGATCATAATGAAACTTGTCACGCCTAAACGAACATGAAATTTCTTGTTTTCTTAGGAATCATCACAACTGTAGCTGCATTTCACCAAGAATGTAGTTTACAGTCATGTACTCAACATCAACCATATGTAGTTGATGACCCGTGTCCTATTCACTTCTATTCTAAATGGTATATTAGAGTAGGAGCTAGAAAATCAGCACCTTTAATTGAATTGTGCGTGGATGAGGCTGGTTCTAAATCACCCATTCAGTACATCGATATCGGTAATTATACAGTTTCCTGTTTACCTTTTACAATTAATTGCCAGGAACCTAAATTGGGTAGTCTTGTAGTGCGTTGTTCGTTCTATGAAGACTTTTTAGAGTATCAT27848- TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_420100
 2020-03-02 2020-04-05
 Singapore hCoV-19/Singapore/23/2020
 ATTA1- C8782T ACTTGAACTGCAAGATCATAATGAAACTTGTCACGCCTAAACGAACATGAAATTTCTTGTTTTCTTAGGAATCATCACAACTGTAGCTGCATTTCACCAAGAATGTAGTTTACAGTCATGTACTCAACATCAACCATATGTAGTTGATGACCCGTGTCCTATTCACTTCTATTCTAAATGGTATATTAGAGTAGGAGCTAGAAAATCAGCACCTTTAATTGAATTGTGCGTGGATGAGGCTGGTTCTAAATCACCCATTCAGTACATCGATATCGGTAATTATACAGTTTCCTGTTTACCTTTTACAATTAATTGCCAGGAACCTAAATTGGGTAGTCTTGTAGTGCGTTGTTCGTTCTATGAAGACTTTTTAGAGTATCAT27848- TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_420784 MT304477
 2020-03-02 2020-04-06
 United States SARS-CoV-2/human/USA/AZ_4811/2020
 C241T C3037T C14408T C16762Y T19839C A23403G G26918K GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_420785 MT304478
 2020-03-02 2020-04-06
 United States SARS-CoV-2/human/USA/FL_6318/2020
 C241T C313Y C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_420792 MT304485
 2020-03-02 2020-04-06
 United States SARS-CoV-2/human/USA/NH_0008/2020
 C241T C1059T C3037T T13006C C14408T A23403G G25563T C25688T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_420793 MT304486
 2020-03-02 2020-04-06
 United States SARS-CoV-2/human/USA/NY_2929/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_422865 LR878121
 2020-03-02 2020-04-11
 Netherlands hCoV-19/Netherlands/NoordBrabant_69/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C9223T G11083T C14805T T17247C G26144T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_424855
 2020-03-02 2020-04-13
 United States hCoV-19/USA/FL_7169/2020
 C241T C3037T C8389T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426179
 2020-03-02 2020-04-15
 India hCoV-19/India/c31/2020
 ATTAAAGGTTTAT1- C241T C313T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_429335
 2020-03-02 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI103/2020
 C884T G1397A A6646G G8653T G11083T G11534A G14371T C18570T T28688C G29742T

EPI_ISL_430202 MT632549
 2020-03-02 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S164/2020
 C8782T G15664A C17747T A17858G C18060T T28144C

EPI_ISL_430276 MT632548
 2020-03-02 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S238/2020
 C8782T T15927G C17747T A17858G C18060T C26936T T28144C

EPI_ISL_430290 MT632518
 2020-03-02 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S252/2020
 C8782T T17475C C17747T A17858G C18060T T28144C G29783T

EPI_ISL_430294 MT632581
 2020-03-02 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S256/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_436050 MT434813
 2020-03-02 2020-05-05
 United States SARS-CoV-2/human/USA/NY-CDC-SURV0144NYC/2020
 A11217G C17440T G29711T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_437663
 2020-03-02 2020-05-11
 Denmark hCoV-19/Denmark/ALAB-SSI-248/2020
 C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC

EPI_ISL_437996
 2020-03-02 2020-05-12
 Austria hCoV-19/Austria/CeMM0148/2020
 C241T C3037T G12832A C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_452218
 2020-03-02 2020-05-27
 Germany hCoV-19/Germany/FrankfurtFFM1/2020
 G3518T G12704T G12797A A17423G T27272C C28854T

EPI_ISL_452219
 2020-03-02 2020-05-27
 Germany hCoV-19/Germany/FrankfurtFFM3/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_452220
 2020-03-02 2020-05-27
 Germany hCoV-19/Germany/FrankfurtFFM4/2020
 C241T C3037T A6228G C14408T C16289Y A23403G GGG28881AAC C28961T C29870M

EPI_ISL_452221
 2020-03-02 2020-05-27
 Germany hCoV-19/Germany/FrankfurtFFM5/2020
 G1440A G2891A A23235G

EPI_ISL_452222
 2020-03-02 2020-05-27
 Germany hCoV-19/Germany/FrankfurtFFM6/2020
 C241T C3037T A6228G C14408T A23403G GGG28881AAC C29870M

EPI_ISL_452223
 2020-03-02 2020-05-27
 Germany hCoV-19/Germany/FrankfurtFFM7/2020
 C241T C3037T C14408T C15324T C23179Y A23403G

EPI_ISL_454868
 2020-03-02 2020-05-29
 Sweden hCoV-19/Sweden/20-50052/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_454869
 2020-03-02 2020-05-29
 Sweden hCoV-19/Sweden/20-50053/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_454904
 2020-03-02 2020-05-29
 China hCoV-19/Wuhan/HB-WH1-122/2020
 

EPI_ISL_454905
 2020-03-02 2020-05-29
 China hCoV-19/Wuhan/HB-WH1-124/2020
 T28144C

EPI_ISL_454906
 2020-03-02 2020-05-29
 China hCoV-19/Wuhan/HB-WH1-125/2020
 C8529T C17690T

EPI_ISL_454907
 2020-03-02 2020-05-29
 China hCoV-19/Wuhan/HB-WH1-126/2020
 A4884G T28144C C29095T

EPI_ISL_454908
 2020-03-02 2020-05-29
 China hCoV-19/Wuhan/HB-WH1-127/2020
 T25043C

EPI_ISL_454909
 2020-03-02 2020-05-29
 China hCoV-19/Wuhan/HB-WH1-130/2020
 C26447G

EPI_ISL_454910
 2020-03-02 2020-05-29
 China hCoV-19/Wuhan/HB-WH1-131/2020
 A9243G G11083T

EPI_ISL_454938
 2020-03-02 2020-05-29
 China hCoV-19/Wuhan/HB-WH3-172/2020
 AAGATTTTC729- G10412T T25382C

EPI_ISL_454942
 2020-03-02 2020-05-29
 China hCoV-19/Wuhan/HB-WH3-181/2020
 G3013T

EPI_ISL_454943
 2020-03-02 2020-05-29
 China hCoV-19/Wuhan/HB-WH3-182/2020
 A9243G C9598T C11074T C14183T C16376T

EPI_ISL_454968
 2020-03-02 2020-05-29
 China hCoV-19/Wuhan/HB-WH5-223/2020
 G26144T

EPI_ISL_454985
 2020-03-02 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM-098/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- G26144T

EPI_ISL_454986
 2020-03-02 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM-099/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- G1397A G3328T T7237C A9243G C10789T G11083T A14651C

EPI_ISL_454987
 2020-03-02 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM-100/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- G1397A G29742T

EPI_ISL_454988
 2020-03-02 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM-102/2020
 G1397A A9243G C10789T G11083T G29742T

EPI_ISL_454989
 2020-03-02 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM-104/2020
 C8782T T18603C C23220T C27925T T28144C C29095T

EPI_ISL_454990
 2020-03-02 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM-107/2020
 G1397A G11083T G29742T A29776T

EPI_ISL_454991
 2020-03-02 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM-108/2020
 C203T G1397A C3096T A9243G C10789T C11074T G11083T C12459T C25046T G29742T

EPI_ISL_454994
 2020-03-02 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM-114/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- C11897T T13243C T14684C

EPI_ISL_454997
 2020-03-02 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM-117/2020
 G1264T G1397A G3328T T7237C A9243G C10789T C11074T G11083T A14651C G29742T

EPI_ISL_455001
 2020-03-02 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM2-266/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- C11897T T13243C C13799T T14684C

EPI_ISL_455005
 2020-03-02 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM2-270/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- T13243C T14684C

EPI_ISL_455014
 2020-03-02 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM2-283/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- C8782T T13243C A19887G C29095T G29742T

EPI_ISL_455327
 2020-03-02 2020-05-29
 Spain hCoV-19/Spain/CastillaLaMancha201306/2020
 C241T C3037T C14408T A23403G C29144T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_455363
 2020-03-02 2020-05-29
 China hCoV-19/Wuhan/HB-WH1-123/2020
 TG14865- C23286- T25382C C26447G C28422A

EPI_ISL_455364
 2020-03-02 2020-05-29
 China hCoV-19/Wuhan/HB-WH1-129/2020
 C19154T C26447G T28144C T28250G A28254- C29095T G29179T

EPI_ISL_455369
 2020-03-02 2020-05-29
 China hCoV-19/Wuhan/HB-WH2-145/2020
 T383C C8529T TG14865- T25382C

EPI_ISL_455371
 2020-03-02 2020-05-29
 China hCoV-19/Wuhan/HB-WH2-147/2020
 T20965- C25041A

EPI_ISL_455399
 2020-03-02 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM-101/2020
 C3168A C6990T CC18109-T G21724T

EPI_ISL_455400
 2020-03-02 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM-103/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- G11083T C11173T C13019T T13243C C17130T CC18109-T G21004A

EPI_ISL_455401
 2020-03-02 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM-105/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- CC18109-T T22549C

EPI_ISL_455402
 2020-03-02 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM-106/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- T13243C TG14865- CC18109-T

EPI_ISL_455403
 2020-03-02 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM-110/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- C8481T T14749C CC18109-T

EPI_ISL_455404
 2020-03-02 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM-111/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- G12761A T13243C A15201T CC18109-T C21587T G26144T C26222T C26344T

EPI_ISL_455405
 2020-03-02 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM-112/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- T4873C AAG12147- CC18109-T G21004A

EPI_ISL_455406
 2020-03-02 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM-118/2020
 C8782T G11230T C14408A A15668G T18603C A19887G A26161- C27925T T28144C C29095T

EPI_ISL_455407
 2020-03-02 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM-119/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- T13243C C15857T CC18109-T C21711T

EPI_ISL_455408
 2020-03-02 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM-121/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- CC18109-T C21707T

EPI_ISL_455411
 2020-03-02 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM2-277/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- G914- T13243C T14684C CC18109-T A26098T C26139T C26198T G26475T

EPI_ISL_455848
 2020-03-02 2020-06-01
 Sweden hCoV-19/Sweden/20-50056/2020
 C241T C3037T C9857T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_457706
 2020-03-02 2020-06-02
 Oman hCoV-19/Oman/RESP-20-1189/2020
 C884T T1209C G1397A G8653T C17069T G27561T T28688C C29250T G29742T

EPI_ISL_459909
 2020-03-02 2020-06-05
 China hCoV-19/Harbin/HRB-26/2020
 C9491T C25603T AAAAAAAAAAAA29892-

EPI_ISL_461113
 2020-03-02 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_678/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8139T C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_464275
 2020-03-02 2020-06-11
 United Kingdom hCoV-19/England/20102003804/2020
 A2480G C2558T G11083T C14805T T21072C A23570R G26144T

EPI_ISL_464347
 2020-03-02 2020-06-11
 United Kingdom hCoV-19/England/201041387/2020
 C241T C3037T C5817T C14408T A23403G GGG28881AAC

EPI_ISL_468763
 2020-03-02 2020-06-17
 Spain hCoV-19/Spain/Logrono_h2286/2020
 A6616R C8782T T9477A C14805T G25979T T28144C C28657T C28863T

EPI_ISL_475551
 2020-03-02 2020-06-23
 Sweden hCoV-19/Sweden/20-08067/2020
 G1397A C17550T A18425C T28688C G29742T

EPI_ISL_479821
 2020-03-02 2020-07-01
 Japan hCoV-19/Japan/PG-0058/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C8782T G16381A T17877C T28144C G28878A G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479831
 2020-03-02 2020-07-01
 Japan hCoV-19/Japan/PG-0080/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C11752T C19170A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479832
 2020-03-02 2020-07-01
 Japan hCoV-19/Japan/PG-0081/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C11752T C19170A TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_479833
 2020-03-02 2020-07-01
 Japan hCoV-19/Japan/PG-0082/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C8782T G16381A T17877C T28144C G28878A G29742A AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_479979
 2020-03-02 2020-07-01
 Japan hCoV-19/Japan/PG-0303/2020
 ATTAAAGGTTTA1- G3179A C6982T C8782T C25904T T28144C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_479980
 2020-03-02 2020-07-01
 Japan hCoV-19/Japan/PG-0304/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- G3179A C6982T C8782T C25904T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488371
 2020-03-02 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F583/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488788
 2020-03-02 2020-07-14
 United Kingdom hCoV-19/England/NORT-281050/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C25350T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488800
 2020-03-02 2020-07-14
 United Kingdom hCoV-19/England/NORT-281041/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4890Y C14408T A23403G C25350T G29777R CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_500085
 2020-03-02 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A4D52/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC C29421T

EPI_ISL_500105
 2020-03-02 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A50C1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1514T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_508935
 2020-03-02 2020-08-04
 France hCoV-19/France/ARA0592/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCT1- C241T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_524476
 2020-03-02 2020-08-28
 Switzerland hCoV-19/Switzerland/AG-1000478260/2020
 C241T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_524478
 2020-03-02 2020-08-28
 Switzerland hCoV-19/Switzerland/ZH-1000478320/2020
 C241T C3037T C3373A C14408T A23403G GGG28881AAC G29422T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_529065
 2020-03-02 2020-09-10
 Peru hCoV-19/Peru/LIM-UPCH-0003/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C4002T T4092G A7479G G10097A C13297T C13536T C14408T A23403G C23731T G27478T GGG28881AAC G29179T TGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29689-

EPI_ISL_530027
 2020-03-02 2020-09-10
 Spain hCoV-19/Spain/MD-LP101/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C527T C1722T A1866G C3037T G13240A C14408T G18271A A20268G A23403G ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_539556
 2020-03-02 2020-09-18
 Spain hCoV-19/Spain/CT-ISCIII-34696/2020
 C241T C3037T C14408T A23403G GGG28881AAC GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

GWHAORO01000001
 2020-03-02 2020-09-11
 China SARS-CoV-2/human/CHN/Beijing-CP2/2020
 C241T C3037T C14408T T14950C A23403G

MT292574
 2020-03-02 2020-04-05
 Spain SARS-CoV-2/human/ESP/Valencia15/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T9477A C14805T C21691T G25979T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT325565
 2020-03-02 2020-04-10
 United States SARS-CoV-2/human/USA/FL_7169/2020
 C241T C3037T C8389T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_413489
 2020-03-03 2020-03-05
 Italy hCoV-19/Italy/UniSR1/2020
 ATTAAA1- A187G C241T C3037T A6956C C14408T A23403G AAAAAAAAAA29894-

EPI_ISL_413563
 2020-03-03 2020-03-07
 United States hCoV-19/USA/WA12-UW8/2020
 ATTAAA1- C8782T C9430A C17747T A17858G C18060T T28144C

EPI_ISL_413579 LR878240
 2020-03-03 2020-03-07
 Netherlands hCoV-19/Netherlands/Nootdorp_1364222/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T C14408T A23403G GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_413584 LR878237
 2020-03-03 2020-03-07
 Netherlands hCoV-19/Netherlands/Rotterdam_1364740/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_413587 LR878233
 2020-03-03 2020-03-07
 Netherlands hCoV-19/Netherlands/Tilburg_1364286/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T C14408T A23403G GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_413600
 2020-03-03 2020-03-09
 Australia hCoV-19/Australia/NSW14/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- G1397A G4255A G11083T A20047G T28688C CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_413602
 2020-03-03 2020-03-09
 Finland hCoV-19/Finland/FIN03032020A/2020
 C241T C3037T C14408T G22865T A23403G C29585T TGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29809-

EPI_ISL_413603
 2020-03-03 2020-03-09
 Finland hCoV-19/Finland/FIN03032020B/2020
 ATT1- G11083T C14805T G26144T G29405C ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_413604
 2020-03-03 2020-03-09
 Finland hCoV-19/Finland/FIN03032020C/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC TGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29807C

EPI_ISL_414433 LR878257
 2020-03-03 2020-03-12
 Netherlands hCoV-19/Netherlands/NoordHolland_1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_414435 LR878245
 2020-03-03 2020-03-12
 Netherlands hCoV-19/Netherlands/Utrecht_1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T C14408T C15407T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_414443 LR878259
 2020-03-03 2020-03-12
 Netherlands hCoV-19/Netherlands/Utrecht_11/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T C14408T A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_414445 LR878253
 2020-03-03 2020-03-12
 Netherlands hCoV-19/Netherlands/ZuidHolland_9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T G4255T C5284T C14408T T16456G C20051T A23403G C24117T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_414446 LR878249
 2020-03-03 2020-03-12
 Netherlands hCoV-19/Netherlands/ZuidHolland_10/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_414526
 2020-03-03 2020-03-13
 United Kingdom hCoV-19/England/201040141/2020
 C241T C3037T C14408T A23403G C25350T

EPI_ISL_414545 LR878310
 2020-03-03 2020-03-13
 Netherlands hCoV-19/Netherlands/NoordBrabant_36/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3145T C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_414549 LR878305
 2020-03-03 2020-03-13
 Netherlands hCoV-19/Netherlands/NoordHolland_2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3145T C14408T T19839C A23403G GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_414562 LR878311
 2020-03-03 2020-03-13
 Netherlands hCoV-19/Netherlands/ZuidHolland_20/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2507T C3037T G3145T C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_414563 LR878312
 2020-03-03 2020-03-13
 Netherlands hCoV-19/Netherlands/ZuidHolland_21/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- G3145T C12621T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_414579
 2020-03-03 2020-03-13
 Chile hCoV-19/Chile/Santiago-1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C1884Y C8782T T9477A C14805T G25979T T28144C C28657T C28863T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_414586
 2020-03-03 2020-03-13
 Ireland hCoV-19/Ireland/Limerick-19934/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C29769T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_414587
 2020-03-03 2020-03-13
 Ireland hCoV-19/Ireland/Limerick-19935/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_414629
 2020-03-03 2020-03-15
 France hCoV-19/France/HF1870/2020
 C241T C3037T C14408T C15324T C16428T A23403G T29867-

EPI_ISL_414630
 2020-03-03 2020-03-15
 France hCoV-19/France/HF1871/2020
 C241T C1059T C2003T C3037T C10582T C14408T A23403G G25563T C27059T

EPI_ISL_415153
 2020-03-03 2020-03-16
 Belgium hCoV-19/Belgium/VLM-03011/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C20148T A23403G A26530G C28826T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_415646
 2020-03-03 2020-03-18
 Italy hCoV-19/Denmark/SSI-101/2020
 -TA2AGAGAACAGATCTACAAGAGACG G7A TA11GGTTGGTTTGT TCCC18GGGA C241T C3037T C14408T A23403G C23575T G23587C AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_415648
 2020-03-03 2020-03-18
 Italy hCoV-19/Denmark/SSI-104/2020
 ATTAAAGGTTTATACCTTCC1- C241T C1059T C1302T C3037T C14408T C18656T A23403G G25563T T29858G G29861A G29864A ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_416028
 2020-03-03 2020-03-20
 Brazil hCoV-19/Brazil/SPBR-07/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416033
 2020-03-03 2020-03-20
 Brazil hCoV-19/Brazil/SPBR-11/2020
 G1440A G2891A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416141
 2020-03-03 2020-03-20
 Denmark hCoV-19/Denmark/SSI-09/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T C14408T A23403G TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_416466 MT598642
 2020-03-03 2020-03-22
 United States SARS-CoV-2/human/USA/WA-S11/2020
 C8782T T15927G C17747T A17858G C18060T C26936T T28144C

EPI_ISL_416469
 2020-03-03 2020-03-22
 Belgium hCoV-19/Belgium/SN-03031/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3130T T3793C C14408T A23403G A26530G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_416475
 2020-03-03 2020-03-22
 Belgium hCoV-19/Belgium/DBA-03032/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_416488
 2020-03-03 2020-03-22
 Poland hCoV-19/Poland/PL_P1/2020
 G198A G1440A G2891A

EPI_ISL_416506
 2020-03-03 2020-03-22
 France hCoV-19/France/B2337/2020
 C241T C1059T C3037T C14408T A23403G G25563T GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_416730
 2020-03-03 2020-03-23
 United Kingdom hCoV-19/England/SHEF-BFCB1/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_416731
 2020-03-03 2020-03-23
 United Kingdom hCoV-19/England/SHEF-BFCC0/2020
 C241T C3037T C14408T G20434T A23403G C25350T C26858T

EPI_ISL_416732
 2020-03-03 2020-03-23
 United Kingdom hCoV-19/England/SHEF-BFCDF/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_416740
 2020-03-03 2020-03-23
 United Kingdom hCoV-19/England/SHEF-BFD54/2020
 T514C

EPI_ISL_416746
 2020-03-03 2020-03-23
 France hCoV-19/France/Valence_425/2020
 C241T C3037T C14408T G18266T G22199T A23403G C27046T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_417065 MT627303
 2020-03-03 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S12/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417066 MT627285
 2020-03-03 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S13/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417069 MT627265
 2020-03-03 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S16/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417070 MT627292
 2020-03-03 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S17/2020
 C8782T C17747T A17858G C18060T C23202T T28144C

EPI_ISL_417071 MT627237
 2020-03-03 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S18/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417104 MT627311
 2020-03-03 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S51/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417105 MT627255
 2020-03-03 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S52/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417106 MT627308
 2020-03-03 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S53/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417110 MT627284
 2020-03-03 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S57/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417115 MT627221
 2020-03-03 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S62/2020
 C8782T C9430A C17747T A17858G C18060T T28144C

EPI_ISL_417117 MT627223
 2020-03-03 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S64/2020
 C8782T T16701C C17747T A17858G C18060T T28144C

EPI_ISL_417118 MT627297
 2020-03-03 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S65/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417227
 2020-03-03 2020-03-25
 United Kingdom hCoV-19/England/20104007503/2020
 C241T C3037T C14408T A23403G

EPI_ISL_417231
 2020-03-03 2020-03-25
 United Kingdom hCoV-19/England/20104008802/2020
 C241T C3037T C7528T C14408T C17762T A23403G C25350T

EPI_ISL_417240
 2020-03-03 2020-03-25
 United Kingdom hCoV-19/England/20106004803/2020
 C241T C3037T C14408T G20434T A23403G C25350T C26858T

EPI_ISL_417244
 2020-03-03 2020-03-25
 United Kingdom hCoV-19/England/20106005403/2020
 C241T C3037T C14408T A23403G GGG28881AAC G29256T

EPI_ISL_417246
 2020-03-03 2020-03-25
 United Kingdom hCoV-19/England/20106145903/2020
 C2091T G11083T C14805T T17247C G26144T

EPI_ISL_417248
 2020-03-03 2020-03-25
 United Kingdom hCoV-19/England/20108003302/2020
 T2C C241T C3037T C14408T A23403G G24077T

EPI_ISL_417256
 2020-03-03 2020-03-25
 United Kingdom hCoV-19/England/20108007302/2020
 C241T C3037T C14408T C20031A A23403G C27046T GGG28881AAC

EPI_ISL_417383
 2020-03-03 2020-03-25
 Australia hCoV-19/Australia/NSW15/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1397A C2113T G11083T C18928T T28688C G29374A G29742T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417429
 2020-03-03 2020-03-25
 Belgium hCoV-19/Belgium/MMJ-03034/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T A23403G C27046T GGG28881AAC TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_417430
 2020-03-03 2020-03-25
 Belgium hCoV-19/Belgium/RT-03035/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C575T C3037T C14408T A23403G TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_417491
 2020-03-03 2020-03-26
 Italy hCoV-19/Italy/UnivPM1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T C3037T C14408T A23403G A26530G GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_417773
 2020-03-03 2020-03-27
 Iceland hCoV-19/Iceland/30/2020
 C241T C1059T C3037T C14408T A23403G G25563T G29195T

EPI_ISL_417842
 2020-03-03 2020-03-27
 Iceland hCoV-19/Iceland/31/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_417979
 2020-03-03 2020-03-27
 Spain hCoV-19/Spain/Madrid_R2_15/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C8782T A9204G A11636T A21352G T25356C T28144C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_417980
 2020-03-03 2020-03-27
 Spain hCoV-19/Spain/Madrid_R5_8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C8782T T12364A A19719T C26088T T28144C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_417986
 2020-03-03 2020-03-28
 Portugal hCoV-19/Portugal/PT0001b/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G C27046T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_417987
 2020-03-03 2020-03-28
 Portugal hCoV-19/Portugal/PT0003/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G C29144T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_418010
 2020-03-03 2020-03-28
 Portugal hCoV-19/Portugal/PT0025/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G C29144T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_418209
 2020-03-03 2020-03-29
 Senegal hCoV-19/Senegal/026/2020
 T3C C241T C1059T C3037T T13006C C14408T A23403G G25563T C25688T T28297C

EPI_ISL_418249
 2020-03-03 2020-03-03
 Spain hCoV-19/Spain/CastillayLeon201372/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_418824
 2020-03-03 2020-03-31
 Canada hCoV-19/Canada/BC_4078583/2020
 G1397A G11083T T28688C G29742T

EPI_ISL_419234
 2020-03-03 2020-04-01
 Spain hCoV-19/Spain/LaRioja201575/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T TATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29832-

EPI_ISL_419240
 2020-03-03 2020-04-01
 Spain hCoV-19/Spain/PaisVasco201607/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T CTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29788-

EPI_ISL_420543 MT577009
 2020-03-03 2020-04-06
 India SARS-CoV-2/human/IND/763/2020
 AT1- C241T C3037T C4809T C8782T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_420545 MT577010
 2020-03-03 2020-04-06
 India SARS-CoV-2/human/IND/770/2020
 ATTAAAGGT1- C241T C3037T C4809T C8782T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_420547 MT577011
 2020-03-03 2020-04-06
 India SARS-CoV-2/human/IND/772/2020
 ATTA1- C241T C3037T C4809T C14408T A23403G TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_420549 MT577012
 2020-03-03 2020-04-06
 India SARS-CoV-2/human/IND/773/2020
 ATTAAAGGTTTAT1- C241T C3037T C4809T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_420551 MT577013
 2020-03-03 2020-04-06
 India SARS-CoV-2/human/IND/777/2020
 ATTAAAGGTTTATAC1- C241T C3037T C4809T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_420553 MT577014
 2020-03-03 2020-04-06
 India SARS-CoV-2/human/IND/781/2020
 A1- A4T C241T C3037T C4809T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_420555
 2020-03-03 2020-04-06
 India hCoV-19/India/c32/2020
 ATTAAAGGTTTAT1- C241T C313T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_420786 MT304480
 2020-03-03 2020-04-06
 United States SARS-CoV-2/human/USA/GA_1320/2020
 T490A C3177T C8782T T18736C C24034T T26729C G28077C T28144C A29700G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_420787 MT304479
 2020-03-03 2020-04-06
 United States SARS-CoV-2/human/USA/GA_1299/2020
 C241T C3037T C14408T A23403G T25554G GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_422825 LR878152
 2020-03-03 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_64/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422898 LR877782
 2020-03-03 2020-04-11
 Netherlands hCoV-19/Netherlands/Utrecht_21/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_425224
 2020-03-03 2020-04-14
 United States hCoV-19/USA/NY-Wadsworth-10495-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_425795
 2020-03-03 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR64/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C20031A A23403G C27046T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_425807
 2020-03-03 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR77/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12455Y C14408T A23403G C25350T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_426025
 2020-03-03 2020-04-14
 United States hCoV-19/USA/NY-Wadsworth-10496-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C12396T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426026
 2020-03-03 2020-04-14
 United States hCoV-19/USA/NY-Wadsworth-10528-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T G28808T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_428683
 2020-03-03 2020-04-21
 Spain hCoV-19/Spain/Madrid_H12_13/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C3037T C8782T A20268G A23403G C26088T T28144C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_429447
 2020-03-03 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI29/2020
 C241T C3037T C14408T G20060T A23403G GGG28881AAC

EPI_ISL_430118 MT627609
 2020-03-03 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S264/2020
 T6178C C8782T C17747T A17858G C18060T G25993A A27525G T28144C

EPI_ISL_430271 MT632558
 2020-03-03 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S233/2020
 C8782T C17747T A17858G C18060T C20234T T28144C

EPI_ISL_430288 MT632606
 2020-03-03 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S250/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_430837
 2020-03-03 2020-04-28
 Thailand hCoV-19/Thailand/TNIC-1889/2020
 ATTAAAGGTTTATACC1- C241T C3037T C14408T G18938A A23403G GGG28881AAC GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_434697
 2020-03-03 2020-05-01
 Thailand hCoV-19/Thailand/NIH-1889/2020
 ATTAAAGGTTTATACC1- C241T C3037T C14408T G18938A A23403G GGG28881AAC GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_437997
 2020-03-03 2020-05-12
 Austria hCoV-19/Austria/CeMM0149/2020
 C241T C3037T G12832A C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_437998
 2020-03-03 2020-05-12
 Austria hCoV-19/Austria/CeMM0150/2020
 C241T C3037T G12832A C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_437999
 2020-03-03 2020-05-12
 Austria hCoV-19/Austria/CeMM0153/2020
 C241T C3037T C14408T T22521K A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_438001
 2020-03-03 2020-05-12
 Italy hCoV-19/Austria/CeMM0155/2020
 C241T C3037T G3994T C14408T A23403G AAAAAAAAAAAAAAAA29888-

EPI_ISL_438002
 2020-03-03 2020-05-12
 Italy hCoV-19/Austria/CeMM0156/2020
 C241T C3037T G3994T C14408T T22521K A23403G AAAAAAAA29896-

EPI_ISL_452099
 2020-03-03 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-97/2020
 C241T C313T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_452116 MT512444
 2020-03-03 2020-05-26
 United States SARS-CoV-2/human/USA/NJ-CDC-3036/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_452124 MT512424
 2020-03-03 2020-05-26
 United States SARS-CoV-2/human/USA/NC-CDC-6999/2020
 C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_452780
 2020-03-03 2020-05-27
 Spain hCoV-19/Spain/COV000678/2020
 C8782T T9477A C14805T C17285T G25979T T28144C C28657T C28863T

EPI_ISL_454447
 2020-03-03 2020-05-28
 Sweden hCoV-19/Sweden/20-08060/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_454448
 2020-03-03 2020-05-28
 Sweden hCoV-19/Sweden/20-08071/2020
 C241T C1190T C3037T C9857T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_454449
 2020-03-03 2020-05-28
 Sweden hCoV-19/Sweden/20-08072/2020
 C241T C3037T C9693T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_454450
 2020-03-03 2020-05-28
 Sweden hCoV-19/Sweden/20-08073/2020
 C241T C3037T C14408T G22583A A23403G

EPI_ISL_454755
 2020-03-03 2020-05-29
 Netherlands hCoV-19/Netherlands/NoordHolland_10006/2020
 ATTAAAGGTTTAT1- G1397A C4755T G11083T A18800T T28688C G29742T AAAAAA29898-

EPI_ISL_454870
 2020-03-03 2020-05-29
 Sweden hCoV-19/Sweden/20-50055/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_454872
 2020-03-03 2020-05-29
 Sweden hCoV-19/Sweden/20-50089/2020
 C241T C3037T A13947T C14408T A23403G GGG28881AAC

EPI_ISL_454873
 2020-03-03 2020-05-29
 Sweden hCoV-19/Sweden/20-50090/2020
 C241T C3037T A13947T C14408T A23403G GGG28881AAC

EPI_ISL_454878
 2020-03-03 2020-05-29
 Sweden hCoV-19/Sweden/20-50099/2020
 C241T C3037T C3373A C14408T A23403G GGG28881AAC

EPI_ISL_454879
 2020-03-03 2020-05-29
 Sweden hCoV-19/Sweden/20-50101/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_454880
 2020-03-03 2020-05-29
 Sweden hCoV-19/Sweden/20-50104/2020
 C241T C3037T C14408T A23403G

EPI_ISL_454881
 2020-03-03 2020-05-29
 Sweden hCoV-19/Sweden/20-50107/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_454913
 2020-03-03 2020-05-29
 China hCoV-19/Wuhan/HB-WH1-136/2020
 A9243G G11083T

EPI_ISL_454914
 2020-03-03 2020-05-29
 China hCoV-19/Wuhan/HB-WH1-137/2020
 C23538T T25382C

EPI_ISL_454917
 2020-03-03 2020-05-29
 China hCoV-19/Wuhan/HB-WH1-141/2020
 T711A C10594T

EPI_ISL_454947
 2020-03-03 2020-05-29
 China hCoV-19/Wuhan/HB-WH3-191/2020
 C1707A T28144C

EPI_ISL_455324
 2020-03-03 2020-05-29
 Spain hCoV-19/Spain/Andalucia201649/2020
 C241T C3037T C8782T A20655T AA20657TG C20660A

EPI_ISL_455341
 2020-03-03 2020-05-29
 Spain hCoV-19/Spain/LaRioja201570/2020
 C8782T T9477A C14805T G18268A G25979T T28144C C28657T C28863T TATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29832-

EPI_ISL_455342
 2020-03-03 2020-05-29
 Spain hCoV-19/Spain/LaRioja201572/2020
 A29T T87G T10849C G25979T G27915A T28144C TATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29832-

EPI_ISL_455343
 2020-03-03 2020-05-29
 Spain hCoV-19/Spain/LaRioja201576/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_455372
 2020-03-03 2020-05-29
 China hCoV-19/Wuhan/HB-WH2-151/2020
 C8529T G10412T TG14865-

EPI_ISL_455377
 2020-03-03 2020-05-29
 China hCoV-19/Wuhan/HB-WH3-177/2020
 G18412- C22482T

EPI_ISL_455382
 2020-03-03 2020-05-29
 China hCoV-19/Wuhan/HB-WH3-187/2020
 C2980A G3013T A3298T C14768A T20965- C22482T

EPI_ISL_455383
 2020-03-03 2020-05-29
 China hCoV-19/Wuhan/HB-WH3-188/2020
 C11481A TG14865- C27925A

EPI_ISL_455410
 2020-03-03 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM2-275/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- T13243C T14684C CC18109-T

EPI_ISL_455596
 2020-03-03 2020-06-01
 Australia hCoV-19/Australia/VPRL004/2020
 G1397A G11083T A18425C G26730T T28688C C28868A G29742T

EPI_ISL_455853
 2020-03-03 2020-06-01
 Sweden hCoV-19/Sweden/20-50100/2020
 C241T C3037T C5730T C14408T A23403G G25456T GGG28881AAC

EPI_ISL_455854
 2020-03-03 2020-06-01
 Sweden hCoV-19/Sweden/20-50103/2020
 C241T C1190T C3037T C9857T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_455855
 2020-03-03 2020-06-01
 Sweden hCoV-19/Sweden/20-50105/2020
 C241T C3037T C14408T C23393T A23403G

EPI_ISL_456190
 2020-03-03 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1109/2020
 C3096T G11083T C12781T G13627T C14805T C15540T C15656T G17944T A21863G G26144T A28338G

EPI_ISL_459965
 2020-03-03 2020-06-05
 Morocco hCoV-19/Morocco/6887/2020
 ATTAAAGGTTTATACCTTC1- C241T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_461114
 2020-03-03 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_679/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T C28344A GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_464294
 2020-03-03 2020-06-11
 United Kingdom hCoV-19/England/201021555/2020
 C11074T G11083T C14805T T17247C G22468K G26144T

EPI_ISL_464295
 2020-03-03 2020-06-11
 United Kingdom hCoV-19/England/201021557/2020
 G11083T C14805T T17247C G26144T C26353Y C28253Y

EPI_ISL_464296
 2020-03-03 2020-06-11
 United Kingdom hCoV-19/England/201021559/2020
 C241T C3037T C14408T A23403G C25350T

EPI_ISL_464318
 2020-03-03 2020-06-11
 United Kingdom hCoV-19/England/201040073/2020
 C241T T1927W C3037T C14408T A19304R A23403G

EPI_ISL_464323
 2020-03-03 2020-06-11
 United Kingdom hCoV-19/England/201040079/2020
 C241T T1456Y C3037T T7090K C14408T G15829K G20098K C22530Y A23403G G24077K

EPI_ISL_464356
 2020-03-03 2020-06-11
 United Kingdom hCoV-19/England/201060004/2020
 C241T C3037T C14408T G20434T A23403G C25350T C26858T

EPI_ISL_464361
 2020-03-03 2020-06-11
 United Kingdom hCoV-19/England/201060015/2020
 C241T C3037T G13348K C14408T A23403G C27046T GGG28881AAC

EPI_ISL_464363
 2020-03-03 2020-06-11
 United Kingdom hCoV-19/England/201060018/2020
 T514C ATG1605- C16375Y

EPI_ISL_464365
 2020-03-03 2020-06-11
 United Kingdom hCoV-19/England/201060020/2020
 C241T C3037T C14408T C20031A A22538R A23403G C27046T GGG28881AAC

EPI_ISL_464372
 2020-03-03 2020-06-11
 United Kingdom hCoV-19/England/201060035/2020
 C241T C3037T T9668Y C14408T A23403G C25350T

EPI_ISL_464383
 2020-03-03 2020-06-11
 United Kingdom hCoV-19/England/201060052/2020
 C241T C1625Y C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_464401
 2020-03-03 2020-06-11
 United Kingdom hCoV-19/England/201060300/2020
 A1305T C2976Y G3774R C10408Y G11083T G26144T

EPI_ISL_464441
 2020-03-03 2020-06-11
 United Kingdom hCoV-19/England/201080049/2020
 C241T C3037T C4999Y C14408T A23403G GGG28881AAC

EPI_ISL_464443
 2020-03-03 2020-06-11
 United Kingdom hCoV-19/England/201080051/2020
 A113G C241T C3037T C14408T A23403G C26942T GGG28881AAC

EPI_ISL_464452
 2020-03-03 2020-06-11
 United Kingdom hCoV-19/England/201080064/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_464461
 2020-03-03 2020-06-11
 United Kingdom hCoV-19/England/201080078/2020
 C241T C3037T C14408T C20031A A23403G C27046T GGG28881AAC G29000K

EPI_ISL_469075
 2020-03-03 2020-06-17
 Sweden hCoV-19/Sweden/20-50106/2020
 C241T C3037T C14408T C21855T A23403G C27046T GGG28881AAC

EPI_ISL_479813
 2020-03-03 2020-07-01
 Japan hCoV-19/Japan/PG-0050/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C11752T C19170A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479814
 2020-03-03 2020-07-01
 Japan hCoV-19/Japan/PG-0051/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGA1- A6561G C11752T C19170A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479890
 2020-03-03 2020-07-01
 Japan hCoV-19/Japan/PG-0182/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C8782T C10615T G16381A T17877C T28144C G28878A G29742A TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_480052
 2020-03-03 2020-07-01
 Japan hCoV-19/Japan/PG-0383/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACT1- G3179A C6982T C8782T T28144C TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_480053
 2020-03-03 2020-07-01
 Japan hCoV-19/Japan/PG-0384/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- G3179A C6982T C8782T T28144C TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_482672
 2020-03-03 2020-07-05
 Singapore hCoV-19/Singapore/24nan/2020
 A23359G

EPI_ISL_482746 MT705205
 2020-03-03 2020-07-04
 Netherlands SARS-CoV-2/human/NLD/Leiden-0001/2020
 ATTAAAGGTT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_483066
 2020-03-03 2020-07-07
 Australia hCoV-19/Australia/SAP098/2020
 A1- G1397A G11083T A18425C G26730T T28688C C28868A G29742T

EPI_ISL_488202
 2020-03-03 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F5ED/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A113G C241T C3037T C14408T A23403G C26942T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488219
 2020-03-03 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F5A1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G24077T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488244
 2020-03-03 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F5B0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488450
 2020-03-03 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F5DE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A113G C241T C3037T C14408T A23403G C26942T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488760
 2020-03-03 2020-07-14
 United Kingdom hCoV-19/England/NORT-281023/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488803
 2020-03-03 2020-07-14
 United Kingdom hCoV-19/England/NORT-28106F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3994T C14408T G15910T TTA21991- A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492397
 2020-03-03 2020-07-20
 United Kingdom hCoV-19/England/BRIS-1854521/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7528T C14408T C17762T A23403G C25350T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493139 MT781414
 2020-03-03 2020-07-21
 Thailand SARS-CoV-2/human/THA/MUMT-4/2020
 ATTAAAGGT1- A1515G C9223T C14805T A17799G T21765G G26144T GTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29828-

EPI_ISL_500097
 2020-03-03 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A4F10/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T C20031A A23403G C27046T GGG28881AAC C29870A

EPI_ISL_524477
 2020-03-03 2020-08-28
 Switzerland hCoV-19/Switzerland/ZH-1000478309/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T C14408T A23403G GGG28881AAC AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_524479
 2020-03-03 2020-08-28
 Switzerland hCoV-19/Switzerland/ZH-1000478554/2020
 C241T C3037T C14408T C21178T A23403G C24026T GGG28881AAC AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_524482
 2020-03-03 2020-08-28
 Switzerland hCoV-19/Switzerland/ZH-1000478518/2020
 C241T C3037T C14408T C14708Y A23403G GGG28881AAC T29148C AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_524484
 2020-03-03 2020-08-28
 Switzerland hCoV-19/Switzerland/SZ-1000478990/2020
 ATTAAA1- C241T C3037T C4777T C14408T C23086T A23403G C27046T A27764C GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_530028
 2020-03-03 2020-09-10
 Spain hCoV-19/Spain/MD-LP102-1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C14404T C14703T C19983T A20239G C26088T T28144C ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_537403
 2020-03-03 2020-09-16
 Spain hCoV-19/Spain/RI-CSIC-99005860/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T AATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29849-

EPI_ISL_537811
 2020-03-03 2020-09-16
 Spain hCoV-19/Spain/RI-CSIC-98002288/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C8782T C26088T G27915A T28144C AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_539500
 2020-03-03 2020-09-18
 Spain hCoV-19/Spain/AR-ISCIII-201435/2020
 G11071C G11083T C24382T

EPI_ISL_539549
 2020-03-03 2020-09-18
 Spain hCoV-19/Spain/CT-ISCIII-202044/2020
 C241T C3037T G8330C G8470A C14408T A22496G A23403G ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_540998
 2020-03-03 2020-09-22
 South korea hCoV-19/South Korea/IHC1215/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C3168T C8090T G11083T C14805T T17247C G26144T AAAAAAAAAAAAAAAA29888-

EPI_ISL_540999
 2020-03-03 2020-09-22
 South korea hCoV-19/South Korea/IHC1217/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCAC1- C3168T C8090T G11083T C14805T T17247C G26144T G27470A AAAAAAAAAAAAAAAA29888-

MT873497
 2020-03-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00002/2020
 ATTAAA1- G11083T C14805T T17247C G26144T G28895T

EPI_ISL_413598
 2020-03-04 2020-03-08
 Australia hCoV-19/Australia/NSW12/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C884T G1397A G8653T G11083T C24381T G28457A T28688C C29627T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_413599
 2020-03-04 2020-03-08
 Australia hCoV-19/Australia/NSW13/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- G1397A C2113T G11083T C18928T C26213Y T28688C G29374A CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_414017
 2020-03-04 2020-03-10
 Brazil hCoV-19/Brazil/SPBR-04/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_414027
 2020-03-04 2020-03-10
 United Kingdom hCoV-19/Scotland/CVR05/2020
 C241T C3037T C14408T A23403G A26530G

EPI_ISL_414045
 2020-03-04 2020-03-11
 Brazil hCoV-19/Brazil/RJ-314/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C3037T C14408T A23403G GAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29795-

EPI_ISL_414363
 2020-03-04 2020-03-11
 United States hCoV-19/USA/WA-UW15/2020
 C8782T C17747T A17858G C18060T C23758T T28144C G29861A G29864A

EPI_ISL_414487
 2020-03-04 2020-03-12
 Ireland hCoV-19/Ireland/COR-20134/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_414500
 2020-03-04 2020-03-12
 United Kingdom hCoV-19/England/Sheff01/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_414578
 2020-03-04 2020-03-13
 Chile hCoV-19/Chile/Talca-2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C8782T C17470T G18907K C26088T T28144C G28580T ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_414597
 2020-03-04 2020-03-14
 United States hCoV-19/USA/WA-UW28/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACT1- T150C T153G T5860C C8782T C17747T A17858G C18060T T28144C

EPI_ISL_414631
 2020-03-04 2020-03-15
 France hCoV-19/France/GE1973/2020
 C241T C3037T C14408T A23403G

EPI_ISL_414632
 2020-03-04 2020-03-15
 France hCoV-19/France/GE1977/2020
 G210T C241T C2416T C3037T C14408T A23403G C24378T G25563T G29543T A29876C

EPI_ISL_414633
 2020-03-04 2020-03-15
 France hCoV-19/France/IDF1980/2020
 C241T C2416T C3037T C14408T A23403G G25563T AATGA29865CCCAT A29871T A29887G

EPI_ISL_414634
 2020-03-04 2020-03-15
 France hCoV-19/France/HF1986/2020
 T18C A26- C28T C241T C1059T C3037T C5348T A8651G C14408T A23403G C25046G G25563T A29866C

EPI_ISL_414635
 2020-03-04 2020-03-15
 France hCoV-19/France/HF1988/2020
 G105T C241T C1059T C3037T C14408T A20766G A23403G G25563T

EPI_ISL_414636
 2020-03-04 2020-03-15
 France hCoV-19/France/HF1989/2020
 A26- C28T G105T C241T C1059T C3037T C14408T A15213G A20766G A23403G G25563T G26199T

EPI_ISL_414637
 2020-03-04 2020-03-15
 France hCoV-19/France/HF1993/2020
 T13A C241T C2416T C3037T C14408T C19884T A23403G G25563T A29888G A29892G A29896G A29900G

EPI_ISL_414638
 2020-03-04 2020-03-15
 France hCoV-19/France/HF1995/2020
 C241T C2416T C3037T T12722C C14408T A23403G G25563T

EPI_ISL_414646
 2020-03-04 2020-03-15
 Finland hCoV-19/Finland/FIN-266/2020
 C241T C3037T C14408T A23403G A26530G GTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29808-

EPI_ISL_415105
 2020-03-04 2020-03-16
 Brazil hCoV-19/Brazil/BA-312/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C313T C3037T C14408T A23403G A26945T GGG28881AAC GAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29795-

EPI_ISL_415151 MT370842
 2020-03-04 2020-03-16
 United States SARS-CoV-2/human/USA/NY2-PV08100/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T TATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29791-

EPI_ISL_415629
 2020-03-04 2020-03-18
 United Kingdom hCoV-19/Scotland/EDB004/2020
 C241T C3037T C14408T A23403G

EPI_ISL_415704
 2020-03-04 2020-03-19
 Switzerland hCoV-19/Switzerland/BE2536/2020
 ATTAAAGG1- C241T C3037T C14408T C15324T A23403G

EPI_ISL_416029
 2020-03-04 2020-03-20
 Brazil hCoV-19/Brazil/SPBR-08/2020
 C241T C313T C3037T C14408T A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416031
 2020-03-04 2020-03-20
 Brazil hCoV-19/Brazil/SPBR-09/2020
 C241T C3037T C14408T A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416032
 2020-03-04 2020-03-20
 Brazil hCoV-19/Brazil/SPBR-10/2020
 C14805T T17247C G26144T GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_416034
 2020-03-04 2020-03-20
 Brazil hCoV-19/Brazil/SPBR-12/2020
 C241T C3037T G10265A G11083T C14408T A23403G GGG28881AAC G29868T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_416487 MT233523
 2020-03-04 2020-03-22
 Spain SARS-CoV-2/human/ESP/Valencia8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_416494
 2020-03-04 2020-03-22
 France hCoV-19/France/N2223/2020
 A187G C241T C3037T C14408T A23403G AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_416747
 2020-03-04 2020-03-23
 France hCoV-19/France/Lyon_487/2020
 C241T C3037T C14408T C15324T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_416748
 2020-03-04 2020-03-23
 France hCoV-19/France/Lyon_508/2020
 C241T C1059T C2306T C3037T C14408T C15952T G20134A A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_416749
 2020-03-04 2020-03-23
 France hCoV-19/France/Valence_532/2020
 C241T A618G C3037T C14408T C15324T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_416752
 2020-03-04 2020-03-23
 France hCoV-19/France/Clermont-Ferrand_650/2020
 C241T C3037T C14408T C15324T A23403G A23720G AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_416994
 2020-03-04 2020-03-23
 Spain hCoV-19/Spain/CastillayLeon201437/2020
 C8782T T9477A C14805T C18582T G25979T T28144C C28657T C28863T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_417010
 2020-03-04 2020-03-23
 Spain hCoV-19/Spain/Madrid201442/2020
 C241T C3037T C14408T A20268G A23403G AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_417091 MT627291
 2020-03-04 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S38/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417092 MT627300
 2020-03-04 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S39/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417102 MT627260
 2020-03-04 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S49/2020
 C8782T C17747T A17858G C18060T T28144C C29250T

EPI_ISL_417116 MT627306
 2020-03-04 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S63/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417120 MT627240
 2020-03-04 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S67/2020
 C8782T C17747T A17858G C18060T T28144C A28709T

EPI_ISL_417121 MT627277
 2020-03-04 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S68/2020
 C8782T C17747T A17858G C18060T T28144C A28709T

EPI_ISL_417222
 2020-03-04 2020-03-25
 United Kingdom hCoV-19/England/20104003002/2020
 C241T C3037T C14408T A23403G C29632Y

EPI_ISL_417232
 2020-03-04 2020-03-25
 United Kingdom hCoV-19/England/20104008902/2020
 C241T C1514T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_417255
 2020-03-04 2020-03-25
 United Kingdom hCoV-19/England/20108007002/2020
 C241T C3037T C14408T A23403G C25350T

EPI_ISL_417264
 2020-03-04 2020-03-25
 United Kingdom hCoV-19/England/20109050306/2020
 T514C ATG1605-

EPI_ISL_417320 MT419842
 2020-03-04 2020-03-25
 United States SARS-CoV-2/human/USA/CA-SCCPHD-UC16/2020
 C7815T G29711T

EPI_ISL_417334
 2020-03-04 2020-03-25
 France hCoV-19/France/Lyon_06056/2020
 C241T C3037T C14408T C15324T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_417386
 2020-03-04 2020-03-25
 Australia hCoV-19/Australia/NSW21/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1397A G11083T G11634T T28688C G29374A G29742T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417422
 2020-03-04 2020-03-25
 Belgium hCoV-19/Belgium/DHWM-03041/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T A23403G GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_417424
 2020-03-04 2020-03-25
 Belgium hCoV-19/Belgium/Human/KA-03042/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T A17215G A23403G A26530G CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_417426
 2020-03-04 2020-03-25
 Belgium hCoV-19/Belgium/SQ-03043/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T A23403G C27046T GGG28881AAC TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_417444 GWHACDD01000001 MT240479
 2020-03-04 2020-03-25
 Pakistan SARS-CoV-2/Gilgit1/Human/2020/PAK
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C884T C1348T G1397A C9159T G11083T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_417444 GWHACDD01000001 MT240479
 2020-03-04 2020-03-25
 Pakistan SARS-CoV-2/Gilgit1/Human/2020/PAK
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C884T C1348T G1397A C9159T G11083T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_417677
 2020-03-04 2020-03-27
 Iceland hCoV-19/Iceland/39/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_417681
 2020-03-04 2020-03-27
 Iceland hCoV-19/Iceland/37/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_417715
 2020-03-04 2020-03-27
 Iceland hCoV-19/Iceland/45/2020
 C241T C1059T G1874A C3037T C14408T C18261T A23403G G25563T

EPI_ISL_417844
 2020-03-04 2020-03-27
 Iceland hCoV-19/Iceland/36/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_417846
 2020-03-04 2020-03-27
 Iceland hCoV-19/Iceland/40/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_417923
 2020-03-04 2020-03-27
 Italy hCoV-19/Italy/INMI5/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T C14408T A20268G A23403G TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_417989
 2020-03-04 2020-03-28
 Portugal hCoV-19/Portugal/PT0005/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C335T C3037T C14408T G20398A A23403G A26530G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_418011
 2020-03-04 2020-03-28
 Portugal hCoV-19/Portugal/PT0026/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G C25791T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_418208
 2020-03-04 2020-03-29
 Senegal hCoV-19/Senegal/020/2020
 C241T C1059T C3037T T13006C C14408T A23403G G25563T C25688T

EPI_ISL_418222
 2020-03-04 2020-03-29
 France hCoV-19/France/CVL2000/2020
 C241T C3037T C14408T C15324T C18656T A23403G C25433T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_418252
 2020-03-04 2020-03-04
 Spain hCoV-19/Spain/Madrid201449/2020
 C8782T TGA21248- C26088T T28144C GAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29795-

EPI_ISL_418270
 2020-03-04 2020-03-04
 Belgium hCoV-19/Belgium/JL-03044/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G C27046T GGG28881AAC AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_418988
 2020-03-04 2020-03-31
 Belgium hCoV-19/Belgium/JRH-030459/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T T19299G A23403G C27046T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_418989
 2020-03-04 2020-03-31
 Belgium hCoV-19/Belgium/RT-030460/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C575T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_419233
 2020-03-04 2020-04-01
 Spain hCoV-19/Spain/Canarias201495/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

EPI_ISL_419709
 2020-03-04 2020-04-03
 Spain hCoV-19/Spain/PaisVasco201602/2020
 C8782T C8874T C14805T A23586G G25979T T28144C C28657T C28863T CTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29788-

EPI_ISL_420101
 2020-03-04 2020-04-05
 Singapore hCoV-19/Singapore/24/2020
 ATTA1- A23359G TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_420136
 2020-03-04 2020-04-05
 Norway hCoV-19/Norway/1694/2020
 ATTAAAG1- T7876A G11083T G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_420314
 2020-03-04 2020-04-06
 Belgium hCoV-19/Belgium/NL-030447/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420319
 2020-03-04 2020-04-06
 Belgium hCoV-19/Belgium/GJ-030458/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1487A C2094T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420324
 2020-03-04 2020-04-06
 Belgium hCoV-19/Belgium/DVBJ-030468/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420442
 2020-03-04 2020-04-06
 Belgium hCoV-19/Belgium/BGM-030444/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4320T C14408T C21590T A23403G G25563T C25688T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420443
 2020-03-04 2020-04-06
 Belgium hCoV-19/Belgium/RA-030445/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G20398A A23403G A26530G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420447
 2020-03-04 2020-04-06
 Belgium hCoV-19/Belgium/DJ-030452/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T T8022G T13402G C14408T A23403G C27046T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_420448
 2020-03-04 2020-04-06
 Belgium hCoV-19/Belgium/GSA-030454/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420454
 2020-03-04 2020-04-06
 Belgium hCoV-19/Belgium/VJP-030463/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T A4050C T4053C T8022G T13402G C14408T A23403G C27046T T28785G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_420534
 2020-03-04 2020-04-06
 Australia hCoV-19/Australia/WA06/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1714T C3037T C14408T A23403G C25350T GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_420788 MT304481
 2020-03-04 2020-04-06
 United States SARS-CoV-2/human/USA/GA_1445/2020
 T490A C3177T C8782T T18736C C24034T T26729C G28077C T28144C A29700G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_422407
 2020-03-04 2020-04-10
 Taiwan hCoV-19/Taiwan/NTU04/2020
 C1288T C6312A G11083T C13730T C23929T C28311T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_424344 MT528239
 2020-03-04 2020-04-12
 Italy SARS-CoV-2/human/ITA/INMI10/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C2062T C3037T C14408T A23403G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_424667
 2020-03-04 2020-04-13
 Mexico hCoV-19/Mexico/EdoMex-InDRE_03/2020
 C8782T C17470T C26088T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_424858
 2020-03-04 2020-04-13
 United States hCoV-19/USA/GA_1621/2020
 C241T C3037T C14408T T19839C T22016W A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424869
 2020-03-04 2020-04-13
 United States hCoV-19/USA/MD_0026/2020
 C241T C3037T C14408T G15672T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424878
 2020-03-04 2020-04-13
 United States hCoV-19/USA/NJ_3592/2020
 C241T C1059T C3037T C14408T GG18505RK T22270Y TT22274WK A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424901
 2020-03-04 2020-04-13
 United States hCoV-19/USA/NJ_3201/2020
 C241T C3037T C14408T C18877T G19847A A23403G G25563T A28480T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424906
 2020-03-04 2020-04-13
 United States hCoV-19/USA/NY_1922/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424911
 2020-03-04 2020-04-13
 United States hCoV-19/USA/MA_9704/2020
 C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424912
 2020-03-04 2020-04-13
 United States hCoV-19/USA/MA_9889/2020
 C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_425803
 2020-03-04 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR72/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C25350T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_426027
 2020-03-04 2020-04-14
 United States hCoV-19/USA/NY-Wadsworth-10683-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- A2480G C2558T G11083T C14805T C17010A C21575T G26144T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_426028
 2020-03-04 2020-04-14
 United States hCoV-19/USA/NY-Wadsworth-10690-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T G10523C C12119T C14408T C18086A A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426029
 2020-03-04 2020-04-14
 United States hCoV-19/USA/NY-Wadsworth-10695-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T G28808T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426030
 2020-03-04 2020-04-14
 United States hCoV-19/USA/NY-Wadsworth-10703-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426031
 2020-03-04 2020-04-14
 United States hCoV-19/USA/NY-Wadsworth-10704-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426032
 2020-03-04 2020-04-14
 United States hCoV-19/USA/NY-Wadsworth-10707-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T C25611T C25693T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426033
 2020-03-04 2020-04-14
 United States hCoV-19/USA/NY-Wadsworth-10935-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T G28808T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426034
 2020-03-04 2020-04-14
 United States hCoV-19/USA/NY-Wadsworth-10955-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426035
 2020-03-04 2020-04-14
 United States hCoV-19/USA/NY-Wadsworth-10957-02/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426036
 2020-03-04 2020-04-14
 United States hCoV-19/USA/NY-Wadsworth-10958-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426425 MT344953
 2020-03-04 2020-04-15
 United States SARS-CoV-2/human/USA/MD_0027/2020
 C241T G558K C3037T C14408T G16508K C18877T A23403G G24933K G25563T C26735Y T29244Y AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_429136
 2020-03-04 2020-04-23
 Sweden hCoV-19/Sweden/20-50048/2020
 C241T G1306T C3037T G11535T A12790G C13568T C14408T A23403G

EPI_ISL_429137
 2020-03-04 2020-04-23
 Sweden hCoV-19/Sweden/20-50076/2020
 C241T C3037T C13517T C14408T A23403G A26530G

EPI_ISL_429341
 2020-03-04 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI109/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_430113 MT627638
 2020-03-04 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S259/2020
 C8782T T15927G C17747T A17858G C18060T C26936T T28144C

EPI_ISL_430133 MT627618
 2020-03-04 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S279/2020
 C8782T C17747T A17858G C18060T C23758T T28144C

EPI_ISL_430200 MT632571
 2020-03-04 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S162/2020
 C8782T G16377T C17747T A17858G C18060T T28144C

EPI_ISL_430201 MT632604
 2020-03-04 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S163/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_430279 MT632616
 2020-03-04 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S241/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_430860
 2020-03-04 2020-04-28
 Sweden hCoV-19/Sweden/20-50043/2020
 C241T C3037T A12790G C13568T C14408T A23403G

EPI_ISL_435594
 2020-03-04 2020-05-05
 United States hCoV-19/USA/CA-SCCPHD-UC115/2020
 C10834T C17104T

EPI_ISL_435596
 2020-03-04 2020-05-05
 United States hCoV-19/USA/CA-SCCPHD-UC117/2020
 G9653T C27493T G29711T

EPI_ISL_436047 MT434786
 2020-03-04 2020-05-05
 United States SARS-CoV-2/human/USA/NY-CDC-SURV0052NYC/2020
 A6639G C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_438003
 2020-03-04 2020-05-12
 Austria hCoV-19/Austria/CeMM0157/2020
 C241T C3037T G12832A C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_438004
 2020-03-04 2020-05-12
 Austria hCoV-19/Austria/CeMM0158/2020
 C241T C3037T G12832A C14408T T22521K A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_438005
 2020-03-04 2020-05-12
 Austria hCoV-19/Austria/CeMM0159/2020
 C241T C3037T G12832A C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAA29889-

EPI_ISL_438006
 2020-03-04 2020-05-12
 Austria hCoV-19/Austria/CeMM0160/2020
 C241T C3037T G12832A C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_447843 MT472622
 2020-03-04 2020-05-14
 United States SARS-CoV-2/human/USA/MD-CDC-0025/2020
 C241T C1221Y C3037T C5211Y C14408T G14874K C16586Y C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_450120
 2020-03-04 2020-05-20
 United States hCoV-19/USA/NY-PV09444/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C3037T A8565G C14408T C18877T A23403G G25563T GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_450508
 2020-03-04 2020-05-21
 Lebanon hCoV-19/Lebanon/S1_758/2020
 CT40AC C241T C3037T C14408T C18877T A23403G G25563T

EPI_ISL_450511
 2020-03-04 2020-05-21
 Lebanon hCoV-19/Lebanon/S4_761/2020
 C37G CT40AC C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_452254
 2020-03-04 2020-05-27
 United Kingdom hCoV-19/England/20109003304/2020
 T514C ATG1605- C29400Y

EPI_ISL_452351
 2020-03-04 2020-05-27
 China hCoV-19/Beijing/DT-travelIT04/2020
 

EPI_ISL_454871
 2020-03-04 2020-05-29
 Sweden hCoV-19/Sweden/20-50088/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_454874
 2020-03-04 2020-05-29
 Sweden hCoV-19/Sweden/20-50091/2020
 C241T C3037T C14408T G22583A A23403G

EPI_ISL_454875
 2020-03-04 2020-05-29
 Sweden hCoV-19/Sweden/20-50093/2020
 C241T C3037T C14408T C23393T A23403G

EPI_ISL_454876
 2020-03-04 2020-05-29
 Sweden hCoV-19/Sweden/20-50096/2020
 C241T C3037T C5730T C14408T A23403G GGG28881AAC

EPI_ISL_454877
 2020-03-04 2020-05-29
 Sweden hCoV-19/Sweden/20-50098/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_454882
 2020-03-04 2020-05-29
 Sweden hCoV-19/Sweden/20-50136/2020
 C241T C3037T C9857T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_454883
 2020-03-04 2020-05-29
 Sweden hCoV-19/Sweden/20-50139/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_454884
 2020-03-04 2020-05-29
 Sweden hCoV-19/Sweden/20-50144/2020
 C241T C3037T C14408T A23403G A26530G G28739T

EPI_ISL_454885
 2020-03-04 2020-05-29
 Sweden hCoV-19/Sweden/20-50147/2020
 C241T C3037T C14408T A23403G A26530G G28739T

EPI_ISL_454886
 2020-03-04 2020-05-29
 Sweden hCoV-19/Sweden/20-50151/2020
 C241T C3037T C14408T C23393T A23403G

EPI_ISL_454887
 2020-03-04 2020-05-29
 Sweden hCoV-19/Sweden/20-50153/2020
 C241T C3037T C9857T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_454888
 2020-03-04 2020-05-29
 Sweden hCoV-19/Sweden/20-50155/2020
 C241T C3037T C9857T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_454976
 2020-03-04 2020-05-29
 China hCoV-19/Wuhan/HB-WH5-233/2020
 C21707T

EPI_ISL_455315
 2020-03-04 2020-05-29
 Spain hCoV-19/Spain/Andalucia201488/2020
 C241T C1059T C3037T C12400T C14408T A23403G G25563T

EPI_ISL_455338
 2020-03-04 2020-05-29
 Spain hCoV-19/Spain/LaRioja201563/2020
 G4148T C8782T T9477A C14805T G25979T T28144C C28657T C28863T TATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29832-

EPI_ISL_455339
 2020-03-04 2020-05-29
 Spain hCoV-19/Spain/LaRioja201565/2020
 A30T CA3188GC A3889G A3943T A4020G T8724C C8782T T8854G T8869C C8980T T9477A C14805T G25979T T28144C C28657T C28863T TATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29832-

EPI_ISL_455352
 2020-03-04 2020-05-29
 Spain hCoV-19/Spain/PaisVasco201491/2020
 C241T C8782T C8874T C14408T A23403G G29734C ATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29850-

EPI_ISL_455353
 2020-03-04 2020-05-29
 Spain hCoV-19/Spain/PaisVasco201492/2020
 C241T C3037T C14408T A23403G T29822G TGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29840-

EPI_ISL_455846
 2020-03-04 2020-06-01
 Sweden hCoV-19/Sweden/20-08069/2020
 C241T C3037T C5730T C14408T A23403G GGG28881AAC

EPI_ISL_455849
 2020-03-04 2020-06-01
 Sweden hCoV-19/Sweden/20-50092/2020
 C241T C3037T C5730T C14408T A23403G GGG28881AAC

EPI_ISL_455850
 2020-03-04 2020-06-01
 Sweden hCoV-19/Sweden/20-50094/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_455851
 2020-03-04 2020-06-01
 Sweden hCoV-19/Sweden/20-50095/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_455852
 2020-03-04 2020-06-01
 Sweden hCoV-19/Sweden/20-50097/2020
 C241T C3037T G7042T C14408T A23403G GGG28881AAC

EPI_ISL_455856
 2020-03-04 2020-06-01
 Sweden hCoV-19/Sweden/20-50140/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_455857
 2020-03-04 2020-06-01
 Sweden hCoV-19/Sweden/20-50141/2020
 C241T C3037T C14408T C22277A A23403G C27046T GGG28881AAC

EPI_ISL_455859
 2020-03-04 2020-06-01
 Sweden hCoV-19/Sweden/20-50149/2020
 C241T C3037T C9857T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_455862
 2020-03-04 2020-06-01
 Sweden hCoV-19/Sweden/20-50156/2020
 C241T C3037T C9857T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_455873
 2020-03-04 2020-06-01
 Sweden hCoV-19/Sweden/20-50214/2020
 C241T C3037T C14408T C23393T A23403G

EPI_ISL_457728
 2020-03-04 2020-06-02
 Italy hCoV-19/Italy/2389/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_460116 MT520191
 2020-03-04 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00440/2020
 ATTAAAGGTTTA1- C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_460250 MT520325
 2020-03-04 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00438/2020
 ATTAAA1- C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAA29892-

EPI_ISL_461146
 2020-03-04 2020-06-06
 Netherlands hCoV-19/Netherlands/NoordBrabant_110/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- C17410T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_464343
 2020-03-04 2020-06-11
 United Kingdom hCoV-19/England/201040706/2020
 C241T C3037T C14408T G23126K A23403G

EPI_ISL_464344
 2020-03-04 2020-06-11
 United Kingdom hCoV-19/England/201040707/2020
 C241T C3037T C14408T G23126K A23403G

EPI_ISL_464362
 2020-03-04 2020-06-11
 United Kingdom hCoV-19/England/201060017/2020
 C241T C3037T C14408T A23403G G24077T

EPI_ISL_464380
 2020-03-04 2020-06-11
 United Kingdom hCoV-19/England/201060046/2020
 C241T C3037T C14408T G20434T A23403G C25350T C26858T

EPI_ISL_464389
 2020-03-04 2020-06-11
 United Kingdom hCoV-19/England/201060061/2020
 G1397A G11083T C12249T C21658T T28688C G29742T

EPI_ISL_464397
 2020-03-04 2020-06-11
 United Kingdom hCoV-19/England/201060144/2020
 G1397A C3117T G11083T A13889G C22452T G28109T T28688C G29742T

EPI_ISL_464399
 2020-03-04 2020-06-11
 United Kingdom hCoV-19/England/201060160/2020
 G1397A C3117T G3847K T6978Y G11083T A13889G A19939T C22513T G28109T T28688C G29742T

EPI_ISL_464402
 2020-03-04 2020-06-11
 United Kingdom hCoV-19/England/201060323/2020
 A2480G C2558T G11083T C14805T G26144T C26994T

EPI_ISL_464404
 2020-03-04 2020-06-11
 United Kingdom hCoV-19/England/201061034/2020
 A1515G C2862Y C9223T G11083T C14805T T17247C A17799G G26144T

EPI_ISL_464424
 2020-03-04 2020-06-11
 United Kingdom hCoV-19/England/201080012/2020
 T514C ATG1605- C21575T G28950R

EPI_ISL_464425
 2020-03-04 2020-06-11
 United Kingdom hCoV-19/England/201080013/2020
 T514C ATG1605- C21575T G28950R

EPI_ISL_464456
 2020-03-04 2020-06-11
 United Kingdom hCoV-19/England/201080071/2020
 C241T C3037T C14408T A23403G C25350T

EPI_ISL_464460
 2020-03-04 2020-06-11
 United Kingdom hCoV-19/England/201080077/2020
 A2480G C2558T G11083T C14805T T21072C G26144T

EPI_ISL_464508
 2020-03-04 2020-06-11
 United Kingdom hCoV-19/England/20109002904/2020
 C241T T898C C3037T C7834T C14408T A23403G C26907Y GGG28881AAC A29771C

EPI_ISL_464561
 2020-03-04 2020-06-11
 United Kingdom hCoV-19/England/20109041904/2020
 A2480G C2558T G11083T C14805T G26144T C26994T

EPI_ISL_468038
 2020-03-04 2020-06-16
 Australia hCoV-19/Australia/SAP099/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- G1397A G2778T G11083T A18425C G26730T T28688C C28868A G29742T

EPI_ISL_469076
 2020-03-04 2020-06-17
 Sweden hCoV-19/Sweden/20-50120/2020
 C241T C3037T C14408T A23403G A26530G

EPI_ISL_475552
 2020-03-04 2020-06-23
 Sweden hCoV-19/Sweden/20-08074/2020
 C14805T T17247C A20116G A21417G G26144T

EPI_ISL_479805
 2020-03-04 2020-07-01
 Japan hCoV-19/Japan/PG-0038/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C8782T A10555G G16381A T17877C T28144C G28878A G29742A AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_479806
 2020-03-04 2020-07-01
 Japan hCoV-19/Japan/PG-0039/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C8782T A10555G G16381A T17877C T28144C G28878A G29742A AATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29818-

EPI_ISL_479834
 2020-03-04 2020-07-01
 Japan hCoV-19/Japan/PG-0084/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C11752T C19170A ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_479835
 2020-03-04 2020-07-01
 Japan hCoV-19/Japan/PG-0087/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C8782T G16381A T17877C T28144C G28878A G29742A AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_479917
 2020-03-04 2020-07-01
 Japan hCoV-19/Japan/PG-0217/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- T4402C G5062T C8782T T28144C TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_480054
 2020-03-04 2020-07-01
 Japan hCoV-19/Japan/PG-0385/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- G3179A C6982T C8782T T28144C TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_480055
 2020-03-04 2020-07-01
 Japan hCoV-19/Japan/PG-0386/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- G3179A C6982T C8782T T28144C TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_480056
 2020-03-04 2020-07-01
 Japan hCoV-19/Japan/PG-0387/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- G3179A C6982T C8782T T28144C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_480057
 2020-03-04 2020-07-01
 Japan hCoV-19/Japan/PG-0388/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- G3179A C6982T C8782T T28144C TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_483194
 2020-03-04 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0515-SAN/2020
 ATTAAAGGTTTATACC1- C241T C1059T C1887T C3037T C14408T G22205C A23403G G25563T A29558G

EPI_ISL_489992
 2020-03-04 2020-07-15
 Malaysia hCoV-19/Malaysia/IMR-WC9205/2020
 ATTAAAGGTTTA1- G1467A C6312A G11083T C13730T C23929T C28311T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_489993
 2020-03-04 2020-07-15
 Malaysia hCoV-19/Malaysia/IMR-WC9174/2020
 TT2AC -5AGTGTGCCTATT G1467A C6312A G11083T C13730T C23929T C28311T -A29865CCCTGGGCTCCCGCCGGCTTCTATTGACTTGGGTTAATCGTGTGACCGCGGTGGCTGGCACGAAT A29871C A29874CCCTGGGGTTAGTATAGCTTAGTTAAACTTTCGTTTATTGCTAAAGGTTAATCACTGCTGTTTCCCGTGGGGGTGTGGCTAGGCTAAGCGTTTTGAGCTGCATTGCTGCGTGCTTGATGCTTGTCCCTTTTGATCGTGGTGATTTAGAGGGTGAACTCACTGGAACGGGGATGCTTGCATGTGTAATCTTACT A29877G AAA29879GCT A29884T A29886G AAAA29890GGCT AA29895GG AA29898CC A29903C

EPI_ISL_493329
 2020-03-04 2020-07-21
 Italy hCoV-19/Italy/INMI17/2020
 ATTAAAGGTTTATACCTT1- C241T C3037T C14408T A23403G A26530G T27501G GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_497999
 2020-03-04 2020-07-26
 South Korea hCoV-19/Korea/KCDC2098/2020
 ATTAAAG1- G5572T G11083T G13564T C14805T G15708T G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_498000
 2020-03-04 2020-07-26
 South Korea hCoV-19/Korea/KCDC2099/2020
 ATTAAA1- G5572T G11083T G13564T C14805T G15708T G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_498001
 2020-03-04 2020-07-26
 South Korea hCoV-19/Korea/KCDC2100/2020
 ATTAAAG1- G5572T G11083T G13564T C14805T G15708T G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_498003
 2020-03-04 2020-07-26
 South Korea hCoV-19/Korea/KCDC2102/2020
 ATTAAAG1- G5572T G9923C G11083T G13564T C14805T G15708T G26144T AAAAAAAAAAAAAAAAAAAA29884-

EPI_ISL_500106
 2020-03-04 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A50D0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G C23575T G23587C

EPI_ISL_501181
 2020-03-04 2020-07-31
 Malaysia hCoV-19/Malaysia/0956/2020
 ATTA1- C29870A

EPI_ISL_508936
 2020-03-04 2020-08-04
 France hCoV-19/France/ARA06032/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTT1- C241T C3037T C12116T C14408T C16640A A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_512990
 2020-03-04 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH721/2020
 C3037T C8782T C14408T C21549T A23403G G27281T G29742A

EPI_ISL_512991
 2020-03-04 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH722/2020
 C241T C3037T C8782T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_512992
 2020-03-04 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH723/2020
 C241T C3037T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_516086 MT483867
 2020-03-04 2020-05-18
 Italy SARS-CoV-2/human/ITA/78952/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C2910S C3037T C14408T C17822T A23403G A26530G G29462K GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_516087 MT483874
 2020-03-04 2020-05-18
 Italy SARS-CoV-2/human/ITA/78955/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C3037T G4255T C14408T T15893Y A23403G A26530G GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_516642
 2020-03-04 2020-08-21
 Germany hCoV-19/Berlin/ChVir-D679-14/2020
 ATTAAAGGTTTA1- C241T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_524481
 2020-03-04 2020-08-28
 Switzerland hCoV-19/Switzerland/AG-1000478772/2020
 C241T C3037T C9561Y C14408T A23403G GGG28881AAC T29148C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_524483
 2020-03-04 2020-08-28
 Switzerland hCoV-19/Switzerland/ZH-1000478869/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- A187G C241T C3037T C14408T A23403G C27494Y T27653C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_527928
 2020-03-04 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42176753/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G3239A C14408T C15324T G21800T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_530029
 2020-03-04 2020-09-10
 Spain hCoV-19/Spain/MD-LP102-2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G9479T C14408T A20268G A23403G C29171T ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_539505
 2020-03-04 2020-09-18
 Spain hCoV-19/Spain/AR-ISCIII-201664/2020
 G11083T G26144T

EPI_ISL_547560
 2020-03-04 2020-09-24
 Netherlands hCoV-19/Netherlands/ZH-RIVM-10079/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A26530G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT325569
 2020-03-04 2020-04-10
 United States SARS-CoV-2/human/USA/GA_1621/2020
 C241T C3037T C14408T T19839C T22016W A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

MT325587
 2020-03-04 2020-04-10
 United States SARS-CoV-2/human/USA/MD_0026/2020
 C241T C3037T C14408T G15672T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MT325596
 2020-03-04 2020-04-10
 United States SARS-CoV-2/human/USA/NJ_3592/2020
 C241T C1059T C3037T C14408T GG18505RK T22270Y TT22274WK A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MT325622
 2020-03-04 2020-04-10
 United States SARS-CoV-2/human/USA/NJ_3201/2020
 C241T C3037T C14408T C18877T G19847A A23403G G25563T A28480T AAAAAAAAAAAAAAAAAAAAA29883-

MT325627
 2020-03-04 2020-04-10
 United States SARS-CoV-2/human/USA/NY_1922/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MT325632
 2020-03-04 2020-04-10
 United States SARS-CoV-2/human/USA/MA_9704/2020
 C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MT325633
 2020-03-04 2020-04-10
 United States SARS-CoV-2/human/USA/MA_9889/2020
 C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MT483880
 2020-03-04 2020-05-18
 Italy SARS-CoV-2/human/ITA/78955/2020/P1
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C3037T G4255T C14408T G22205S A23403G A26530G GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_413650
 2020-03-05 2020-03-09
 United States hCoV-19/USA/WA15-UW11/2020
 A1T C8782T C17747T A17858G C18060T T23010C T28144C

EPI_ISL_413651
 2020-03-05 2020-03-09
 United States hCoV-19/USA/WA16-UW12/2020
 A1T T3G C8782T C17747T A17858G C18060T T23010C T28144C

EPI_ISL_413653
 2020-03-05 2020-03-09
 United States hCoV-19/USA/WA18-UW14/2020
 A1T A6T C8782T C17747T A17858G C18060T T28144C

EPI_ISL_413925 MT419835
 2020-03-05 2020-03-10
 United States SARS-CoV-2/human/USA/CA-CDPH-UC7/2020
 A1G A3046G C8782T A16467G C17747T A17858G C18060T C23185T T28144C

EPI_ISL_413928 MT419837
 2020-03-05 2020-03-10
 United States SARS-CoV-2/human/USA/CA-CDPH-UC9/2020
 A3046G C8782T A16467G G16975T C17747T A17858G C18060T C23185T T28144C

EPI_ISL_413931 MT419839
 2020-03-05 2020-03-10
 United States SARS-CoV-2/human/USA/CA-CDPH-UC11/2020
 A3046G C8782T A16467G G16975T C17747T A17858G C18060T C23185T T28144C

EPI_ISL_414366
 2020-03-05 2020-03-11
 United States hCoV-19/USA/WA-UW18/2020
 ATTAAAGGT1- C8782T C17747T A17858G C18060T T28144C -29904GAA

EPI_ISL_414367
 2020-03-05 2020-03-11
 United States hCoV-19/USA/WA-UW19/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACT1- GG260CC A263- C8782T C17747T A17858G C18060T C25731T T28144C AAAAAAAAA29895-

EPI_ISL_414368
 2020-03-05 2020-03-11
 United States hCoV-19/USA/WA-UW20/2020
 ATTAAAGGTTTAT1- A35T C8782T C17747T A17858G C18060T T28144C

EPI_ISL_414369
 2020-03-05 2020-03-11
 United States hCoV-19/USA/WA-UW21/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- TT77AA A80T A82T C84A G86A C8782T C17747T A17858G C18060T T28144C -29904AAAAAANANANANV

EPI_ISL_414467 LR878283
 2020-03-05 2020-03-12
 Netherlands hCoV-19/Netherlands/ZuidHolland_7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- ATG1605- C12068T C12621T TTA21991- GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_414561 LR878316
 2020-03-05 2020-03-13
 Netherlands hCoV-19/Netherlands/ZuidHolland_19/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3145T C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_414580
 2020-03-05 2020-03-13
 Chile hCoV-19/Chile/Santiago-2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C3393T C14408T A23403G GGG28881AAC CCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29835-

EPI_ISL_414588 MT188341
 2020-03-05 2020-03-13
 United States USA/MN1-MDH1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A6035G C8782T A16467G C17747T A17858G C18060T -C21385TTCT C23185T T28144C CCATGTGATTTTAATAGCTTCTT29837- TG29867CCTCTCGA C29870A A29892G AA29896GG

EPI_ISL_414593
 2020-03-05 2020-03-14
 United States hCoV-19/USA/WA-UW24/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- C8782T C17747T A17858G C18060T T28144C AAAAAAAA29896-

EPI_ISL_414594
 2020-03-05 2020-03-14
 United States hCoV-19/USA/WA-UW25/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAGATGGAGAGCCTTGTCCCTGGTT1- T3011C C3037T C14408T A23403G AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_414595
 2020-03-05 2020-03-14
 United States hCoV-19/USA/WA-UW26/2020
 A1- T3G C832T C8782T C17747T A17858G C18060T T28144C AAAA29900-

EPI_ISL_414598 MT198652
 2020-03-05 2020-03-16
 Spain SARS-CoV-2/human/ESP/Valencia003/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_414641
 2020-03-05 2020-03-15
 Finland hCoV-19/Finland/FIN-313/2020
 C241T C3037T C14408T C22277A A23403G C23635T C27046T GGG28881AAC GTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29808-

EPI_ISL_415605 MT252801
 2020-03-05 2020-03-18
 United States SARS-CoV-2/human/USA/WA-UW40/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGAT1- G261T C8782T C17747T A17858G C18060T T23010C T28144C TG29867AA C29870A -29904AAAAAAAAAAAAAAAA

EPI_ISL_415649
 2020-03-05 2020-03-18
 France hCoV-19/France/HF2039/2020
 C241T C1059T T1666C C3037T C14408T A23403G C23520T G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_415651
 2020-03-05 2020-03-18
 France hCoV-19/France/BFC2094/2020
 C241T C3037T G3728T C14408T C15324T A23403G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_415652
 2020-03-05 2020-03-18
 France hCoV-19/France/BFC2147/2020
 C241T C3037T C13051T C14408T C15324T A23403G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_416035
 2020-03-05 2020-03-20
 Brazil hCoV-19/Brazil/SPBR-13/2020
 C241T C313T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAA29891-

EPI_ISL_416036
 2020-03-05 2020-03-20
 Brazil hCoV-19/Brazil/SPBR-14/2020
 ATTAAAGGTTTATACCT1- C241T C3037T C14408T A23403G G25088T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416479
 2020-03-05 2020-03-22
 Georgia hCoV-19/Georgia/Tb-273/2020
 ATT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_416507
 2020-03-05 2020-03-22
 France hCoV-19/France/B2340/2020
 C3987T G11083T G20887A T23084C G26144T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_416743
 2020-03-05 2020-03-23
 Czech Republic hCoV-19/Czech Republic/ChVir1912/2020
 ATTAAAG1- C241T C3037T C14408T A23403G GGG28881AAC T29148C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_416751
 2020-03-05 2020-03-23
 France hCoV-19/France/Clermont-Ferrand_651/2020
 C241T C3037T C14408T C15324T G19684T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_417103 MT627236
 2020-03-05 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S50/2020
 C8782T C16466T C17747T A17858G C18060T T28144C

EPI_ISL_417107 MT627259
 2020-03-05 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S54/2020
 C8782T C16466T C17747T A17858G C18060T T28144C

EPI_ISL_417114 MT627282
 2020-03-05 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S61/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417122 MT627302
 2020-03-05 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S69/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417123 MT627250
 2020-03-05 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S70/2020
 C6813T C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417124 MT627294
 2020-03-05 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S71/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417126 MT627229
 2020-03-05 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S73/2020
 C8782T G11083T C17747T A17858G C18060T T28144C

EPI_ISL_417127 MT627278
 2020-03-05 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S74/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417128 MT627314
 2020-03-05 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S75/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417129 MT627238
 2020-03-05 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S76/2020
 C8782T A14604G C17747T A17858G C18060T C21911T T28144C

EPI_ISL_417132 MT627257
 2020-03-05 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S79/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417133 MT627247
 2020-03-05 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S80/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417136 MT627232
 2020-03-05 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S83/2020
 C8782T G14126A C17747T A17858G C18060T T28144C

EPI_ISL_417157 MT627256
 2020-03-05 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S104/2020
 C6317T C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417163 MT605816
 2020-03-05 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S110/2020
 C8782T T15927G C17747T A17858G C18060T C18401T C26936T T28144C

EPI_ISL_417167 MT627268
 2020-03-05 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S114/2020
 C6317T C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417252
 2020-03-05 2020-03-25
 United Kingdom hCoV-19/England/20108006003/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_417260
 2020-03-05 2020-03-25
 United Kingdom hCoV-19/England/20109035906/2020
 C241T C3037T C10116Y C14408T A23403G GGG28881AAC

EPI_ISL_417266
 2020-03-05 2020-03-25
 United Kingdom hCoV-19/England/20109050506/2020
 C241T C3037T C14408T A23403G C25350Y

EPI_ISL_417268
 2020-03-05 2020-03-25
 United Kingdom hCoV-19/England/20109050706/2020
 C2558T G11083T C14805T G26144T

EPI_ISL_417282
 2020-03-05 2020-03-25
 United Kingdom hCoV-19/England/20109056906/2020
 A2480G C2558T G11083T C14805T G26144T

EPI_ISL_417286
 2020-03-05 2020-03-25
 United Kingdom hCoV-19/England/20109093706/2020
 ATG1605- C20270T A29683T

EPI_ISL_417302
 2020-03-05 2020-03-25
 United Kingdom hCoV-19/England/20110000706/2020
 C241T C3037T C14408T A23403G G24077T

EPI_ISL_417384
 2020-03-05 2020-03-25
 Australia hCoV-19/Australia/NSW18/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1397A C5223T G11083T T22213C T28688C C29563T G29742T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417388
 2020-03-05 2020-03-25
 Australia hCoV-19/Australia/NSW25/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6312A G11083T C13730T C21034T C23929T C28311T C29732T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417519 MT374102
 2020-03-05 2020-03-27
 Taiwan SARS-CoV-2/human/TWN/CGMH-CGU-06/2020
 AT1- C1059T G1397A G11083T C23934T T28648C T28688C G29742T

EPI_ISL_417683
 2020-03-05 2020-03-27
 Iceland hCoV-19/Iceland/47/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_417851
 2020-03-05 2020-03-27
 Iceland hCoV-19/Iceland/53/2020
 A187G C241T C3037T C14408T A23403G

EPI_ISL_417988
 2020-03-05 2020-03-28
 Portugal hCoV-19/Portugal/PT0004/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G C29144T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_418223
 2020-03-05 2020-03-29
 France hCoV-19/France/HF2060/2020
 C241T C2416T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_418330
 2020-03-05 2020-03-05
 Canada hCoV-19/Canada/ON_PHL8580/2020
 A1- C8782T C17747T A17858G C18060T T18863C A24694T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418366
 2020-03-05 2020-03-05
 Canada hCoV-19/Canada/ON_PHL3350/2020
 A1- C241T C3037T A10630G C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418792
 2020-03-05 2020-03-31
 Belgium hCoV-19/Belgium/GL-030546/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1437T C3037T C14408T C23393T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_418796
 2020-03-05 2020-03-31
 Belgium hCoV-19/Belgium/VDLH-030548/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_418797
 2020-03-05 2020-03-31
 Belgium hCoV-19/Belgium/VDLH-030548/2020/P1
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_418798
 2020-03-05 2020-03-31
 Belgium hCoV-19/Belgium/GS-030549/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4320T C14408T C21590T A23403G G25563T C25688T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_418806
 2020-03-05 2020-03-31
 Belgium hCoV-19/Belgium/BG-030551/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_418848
 2020-03-05 2020-03-31
 Canada hCoV-19/Canada/BC_8159203/2020
 C8782T A17858G C18060T T28144C

EPI_ISL_418863
 2020-03-05 2020-03-31
 Belgium hCoV-19/Belgium/VS-030542/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C17002T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_419230
 2020-03-05 2020-04-01
 Spain hCoV-19/Spain/Andalucia201617/2020
 C8782T C26088T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_419238
 2020-03-05 2020-04-01
 Spain hCoV-19/Spain/PaisVasco201493/2020
 T9477A C14805T G25979T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_419566
 2020-03-05 2020-04-02
 Luxembourg hCoV-19/Luxembourg/LNS0641910/2020
 G11083T C14805T T17247C G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_420102
 2020-03-05 2020-04-05
 Singapore hCoV-19/Singapore/25/2020
 ATTAAAGG1- C18888T C21306T G24368C TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_420103
 2020-03-05 2020-04-05
 Singapore hCoV-19/Singapore/26/2020
 ATTAAAGGTTTA1- C17536Y C18680Y C21306T T27919Y G29773K TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_420104
 2020-03-05 2020-04-05
 Singapore hCoV-19/Singapore/27/2020
 ATT1- T9W A7479G G11083T C14805T T17247C C25572T G26144T TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_420139
 2020-03-05 2020-04-05
 Norway hCoV-19/Norway/1811/2020
 ATTAAAGGTTT1- C241T C3037T C14408T G15575T A23403G A26530G C29541T AAAAAA29898-

EPI_ISL_420317
 2020-03-05 2020-04-06
 Belgium hCoV-19/Belgium/RJ-030552/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T A4050C T4053C C14408T A23403G C27046T T28785G GGG28881AAC ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_420322
 2020-03-05 2020-04-06
 Belgium hCoV-19/Belgium/DBOM-030566/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1666C C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420325
 2020-03-05 2020-04-06
 Belgium hCoV-19/Belgium/DLDJ-030569/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A26530G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420329
 2020-03-05 2020-04-06
 Belgium hCoV-19/Belgium/GE-030573/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A12982G C14408T A23403G A26530G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420330
 2020-03-05 2020-04-06
 Belgium hCoV-19/Belgium/MCW-030574/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A13947T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420331
 2020-03-05 2020-04-06
 Belgium hCoV-19/Belgium/LY-030575/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A13947T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420334
 2020-03-05 2020-04-06
 Belgium hCoV-19/Belgium/GOF-030578/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4320T C14408T C21590T A23403G G25563T C25688T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420337
 2020-03-05 2020-04-06
 Belgium hCoV-19/Belgium/PAN-030681/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420339
 2020-03-05 2020-04-06
 Belgium hCoV-19/Belgium/SJ-030583/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420344
 2020-03-05 2020-04-06
 Belgium hCoV-19/Belgium/RJL-030588/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420348
 2020-03-05 2020-04-06
 Belgium hCoV-19/Belgium/FM-030592/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_420349
 2020-03-05 2020-04-06
 Belgium hCoV-19/Belgium/DD-030593/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T12139C A13947T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420353
 2020-03-05 2020-04-06
 Belgium hCoV-19/Belgium/LD-030597/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241Y C1376T C3037T A8072G C14408T C18131T A23403G GGG28881AAC C29774T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420354
 2020-03-05 2020-04-06
 Belgium hCoV-19/Belgium/BS-030598/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420367
 2020-03-05 2020-04-06
 Belgium hCoV-19/Belgium/JK-0305110/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420444
 2020-03-05 2020-04-06
 Belgium hCoV-19/Belgium/MF-030546/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420453
 2020-03-05 2020-04-06
 Belgium hCoV-19/Belgium/VF-030562/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T A4050C T13402G C14408T A23403G C27046T C28344A GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_420541
 2020-03-05 2020-04-06
 Slovenia hCoV-19/Slovenia/808/2020
 ATTAAA1- G11083T C14805T C23707T G26144T T27384C C28826T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_421171
 2020-03-05 2020-04-07
 Spain hCoV-19/Spain/Madrid_H12_1301/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421182
 2020-03-05 2020-04-07
 Belgium hCoV-19/Belgium/ULG-10001/2020
 C241T C1059T C3037T C14408T A23403G C23679T G25563T G28857A

EPI_ISL_424843
 2020-03-05 2020-04-13
 United States hCoV-19/USA/MA_0020/2020
 C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424853
 2020-03-05 2020-04-13
 United States hCoV-19/USA/FL_9590/2020
 G11083T C14805T A15779C T17247C G26144T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424854
 2020-03-05 2020-04-13
 United States hCoV-19/USA/FL_9655/2020
 T490A C3177T C8782T T18736C G19684T C24034T T26729C C27635Y G28077C T28144C A29700G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424859
 2020-03-05 2020-04-13
 United States hCoV-19/USA/GA_1847/2020
 T490A C3177T C8782T T18736C C24034T T26729C G28077C T28144C A29700G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424874
 2020-03-05 2020-04-13
 United States hCoV-19/USA/NE_6605/2020
 G1440A G2891A C12651T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424881
 2020-03-05 2020-04-13
 United States hCoV-19/USA/PA_1802/2020
 C241T C3037T C14408T A20268G A23403G G29734C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424882
 2020-03-05 2020-04-13
 United States hCoV-19/USA/PA_1881/2020
 C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424887
 2020-03-05 2020-04-13
 United States hCoV-19/USA/RI_0702/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424889
 2020-03-05 2020-04-13
 United States hCoV-19/USA/UT_8199/2020
 C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424902
 2020-03-05 2020-04-13
 United States hCoV-19/USA/SC_3520/2020
 T490A C3177T C8782T T18736C C24034T T26729C G28077C T28144C A29700G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424905
 2020-03-05 2020-04-13
 United States hCoV-19/USA/SC_3572/2020
 C241T C3037T G4255T C14408T A23403G A26530G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424908
 2020-03-05 2020-04-13
 United States hCoV-19/USA/MA_8932/2020
 C241T C2416T C3037T C14408T A23403G G25563T G26233T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424909
 2020-03-05 2020-04-13
 United States hCoV-19/USA/MA_8933/2020
 C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424910
 2020-03-05 2020-04-13
 United States hCoV-19/USA/MA_9703/2020
 C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424913
 2020-03-05 2020-04-13
 United States hCoV-19/USA/MA_1355/2020
 C14805T T17247C G26144T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_425806
 2020-03-05 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR76/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6364A C14408T A18710G A20268G A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_425819
 2020-03-05 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB002/2020
 T514C C19484T

EPI_ISL_426037
 2020-03-05 2020-04-14
 United States hCoV-19/USA/NY-Wadsworth-10999-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426038
 2020-03-05 2020-04-14
 United States hCoV-19/USA/NY-Wadsworth-11000-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- A2480G C2558T G11083T C14805T C17010A C21575T G26144T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426039
 2020-03-05 2020-04-14
 United States hCoV-19/USA/NY-Wadsworth-11003-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426040
 2020-03-05 2020-04-14
 United States hCoV-19/USA/NY-Wadsworth-11017-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426420 MT344948
 2020-03-05 2020-04-15
 United States SARS-CoV-2/human/USA/HI_4970/2020
 C241T C3037T C14408T A20268G A23403G C28854T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426426 MT344954
 2020-03-05 2020-04-15
 United States SARS-CoV-2/human/USA/MN_0100/2020
 A6035G C8782T A16467G C17747T A17858G C18060T C23185T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426512
 2020-03-05 2020-04-17
 United States hCoV-19/USA/AZ-TG268893/2020
 C4633T C8782T C14645T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_427299
 2020-03-05 2020-04-18
 Brazil hCoV-19/Brazil/RJ-352/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C8782T T9477A C14805T A21694G G25979T T28144C C28657T C28863T GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_429138
 2020-03-05 2020-04-23
 Sweden hCoV-19/Sweden/20-50087/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_430117 MT627626
 2020-03-05 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S263/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_430119 MT627637
 2020-03-05 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S265/2020
 C8782T C17747T A17858G C18060T G22984A T27384C T28144C

EPI_ISL_430122 MT627632
 2020-03-05 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S268/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_430146 MT627612
 2020-03-05 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S292/2020
 C8782T C17747T A17858G C18060T G26466A T28144C

EPI_ISL_430152 MT627623
 2020-03-05 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S298/2020
 C8782T C16750T C17747T A17858G C18060T T28144C

EPI_ISL_430439
 2020-03-05 2020-04-27
 Malaysia hCoV-19/Malaysia/IMR_WC1177/2020
 A1GGGCAGACGGGCGA A4T C11752T C19170A A29877G AA29879TG A29882T AAAAAAAAAAAAAAAAAA29886G

EPI_ISL_430440
 2020-03-05 2020-04-27
 Malaysia hCoV-19/Malaysia/IMR_WC1170/2020
 A1TTTTTTACTATGGTTGAAAAGATGTGCCCTACTGAACAAAAATCACACATGAAGATTTACTTTGTGA -A3CAG AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_435601
 2020-03-05 2020-05-05
 United States hCoV-19/USA/CA-SCCPHD-UC122/2020
 

EPI_ISL_436048 MT434782
 2020-03-05 2020-05-05
 United States SARS-CoV-2/human/USA/NY-CDC-SURV0076NYC/2020
 C241T C1059T C3037T C11916T C13536T C14408T C18998T A23403G G25563T A28989W G29540A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_437204
 2020-03-05 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0002/2020
 C241T C3037T C14408T A23403G C27046T C28344A GGG28881AAC

EPI_ISL_437894 MT459897
 2020-03-05 2020-05-11
 Greece SARS-CoV-2/human/GRC/234_31670/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T C18877T A23403G G25563T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_437929
 2020-03-05 2020-05-12
 Austria hCoV-19/Austria/CeMM0041/2020
 C241T C3037T C14408T T22521K A23403G AAAAAAAAAAAAAAAAAAA29885-

EPI_ISL_438007
 2020-03-05 2020-05-12
 Austria hCoV-19/Austria/CeMM0161/2020
 C241T C3037T G12832A C14408T A23403G G24102C C26894T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_438008
 2020-03-05 2020-05-12
 Austria hCoV-19/Austria/CeMM0162/2020
 C241T C3037T G12832A C14408T A23403G G24102C GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_443313
 2020-03-05 2020-05-12
 France hCoV-19/France/B6041/2020
 C241T C3037T C14408T C22120T A23403G C23575T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_445246
 2020-03-05 2020-05-15
 Chile hCoV-19/Chile/Puerto_Montt_1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G GATTTT29843A AT29850GA TC29856AT TAGG29859- G29864A G29868C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_447846 MT472623
 2020-03-05 2020-05-14
 United States SARS-CoV-2/human/USA/VT-CDC-0303/2020
 C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_451934
 2020-03-05 2020-05-25
 Croatia hCoV-19/Croatia/ZG-297-20/2020
 ATTAAAGGTT1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T G28209T GGG28881AAC

EPI_ISL_452134 MT512417
 2020-03-05 2020-05-26
 United States SARS-CoV-2/human/USA/IL-CDC-1732/2020
 C8782Y G13571K C16694M G16912K C17747T A17858G G18002K C18060T T28144C G28631R AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_452352
 2020-03-05 2020-05-27
 China hCoV-19/Beijing/DT-travelIT01/2020
 A12C C241T C3037T T6552G C14408T C18568T A23118C A23403G

EPI_ISL_452751
 2020-03-05 2020-05-27
 Spain hCoV-19/Spain/COV000717/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T

EPI_ISL_452754
 2020-03-05 2020-05-27
 Spain hCoV-19/Spain/COV000714/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T C29870A

EPI_ISL_452759
 2020-03-05 2020-05-27
 Spain hCoV-19/Spain/COV000707/2020
 C8782T T9477A C14805T G25785T G25979T T28144C C28657T C28863T

EPI_ISL_454451
 2020-03-05 2020-05-28
 Sweden hCoV-19/Sweden/20-08076/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_454452
 2020-03-05 2020-05-28
 Sweden hCoV-19/Sweden/20-08077/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_454453
 2020-03-05 2020-05-28
 Sweden hCoV-19/Sweden/20-08078/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_454454
 2020-03-05 2020-05-28
 Sweden hCoV-19/Sweden/20-08079/2020
 C241T C3037T C14408T A20608G A23403G C27046T GGG28881AAC

EPI_ISL_454455
 2020-03-05 2020-05-28
 Sweden hCoV-19/Sweden/20-08081/2020
 C241T C3037T C14408T A20608G A23403G C27046T GGG28881AAC

EPI_ISL_454456
 2020-03-05 2020-05-28
 Sweden hCoV-19/Sweden/20-08082/2020
 C241T C3037T C14408T A23403G

EPI_ISL_454457
 2020-03-05 2020-05-28
 Sweden hCoV-19/Sweden/20-08083/2020
 C241T C3037T C14408T G22583A A23403G

EPI_ISL_454458
 2020-03-05 2020-05-28
 Sweden hCoV-19/Sweden/20-08084/2020
 C241T C3037T C5730T C14408T A23403G GGG28881AAC

EPI_ISL_454459
 2020-03-05 2020-05-28
 Sweden hCoV-19/Sweden/20-08085/2020
 C241T C3037T A13947T C14408T A23403G GGG28881AAC

EPI_ISL_454460
 2020-03-05 2020-05-28
 Sweden hCoV-19/Sweden/20-08086/2020
 C241T C3037T A13947T C14408T A23403G GGG28881AAC

EPI_ISL_454461
 2020-03-05 2020-05-28
 Sweden hCoV-19/Sweden/20-08088/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_454462
 2020-03-05 2020-05-28
 Sweden hCoV-19/Sweden/20-08090/2020
 C241T C3037T C9857T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_454592
 2020-03-05 2020-05-28
 Croatia hCoV-19/Croatia/297_Varazdin/2020
 ATTAAA1- C241T C3037T C4002T G10097A TA12494WM AC12498WM C13536T C14408T A23403G G25593C TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_454756
 2020-03-05 2020-05-29
 Netherlands hCoV-19/Netherlands/Utrecht_10007/2020
 ATTA1- T514C ATG1605- C18647T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_455316
 2020-03-05 2020-05-29
 Spain hCoV-19/Spain/Andalucia201613/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T

EPI_ISL_455317
 2020-03-05 2020-05-29
 Spain hCoV-19/Spain/Andalucia201614/2020
 A436C G7160T C8782T T9477A A19673G T19843C T28144C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_455318
 2020-03-05 2020-05-29
 Spain hCoV-19/Spain/Andalucia201615/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C14805T C21342G C23707T T27384C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_455319
 2020-03-05 2020-05-29
 Spain hCoV-19/Spain/Andalucia201616/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- ATG1605- A21187C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_455320
 2020-03-05 2020-05-29
 Spain hCoV-19/Spain/Andalucia201620/2020
 C8782T T9477A C12513T C14805T T23590A A25765T C26681T T28144C C28657T C28863T

EPI_ISL_455321
 2020-03-05 2020-05-29
 Spain hCoV-19/Spain/Andalucia201622/2020
 C2143T T3981C A3985G C8782T T9477A C14805T G25979T T28144C C28657T

EPI_ISL_455322
 2020-03-05 2020-05-29
 Spain hCoV-19/Spain/Andalucia201623/2020
 C1419T C8782T T9477A C14805T T21657A A22110T T28144C C28657T C28863T

EPI_ISL_455325
 2020-03-05 2020-05-29
 Spain hCoV-19/Spain/Canarias201811/2020
 A391G C635T C1875T C3792T T4579A C8782T T9477A A9673T C9687T C14805T A21620T C28657T T29760C ATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29850-

EPI_ISL_455340
 2020-03-05 2020-05-29
 Spain hCoV-19/Spain/LaRioja201568/2020
 C8782T T9477A C14805T T28144C C28657T C28863T TATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29832-

EPI_ISL_455354
 2020-03-05 2020-05-29
 Spain hCoV-19/Spain/PaisVasco201920/2020
 C241T C8782T C8874T C14408T A23403G G29734C ATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29850-

EPI_ISL_455409
 2020-03-05 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM2-273/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- T13243C T14684C CC18109-T

EPI_ISL_455444
 2020-03-05 2020-05-29
 Poland hCoV-19/Poland/PL_P31/2020
 C241T C3037T C14408T A23403G

EPI_ISL_455858
 2020-03-05 2020-06-01
 Sweden hCoV-19/Sweden/20-50148/2020
 C241T C3037T C14408T C23393T A23403G

EPI_ISL_455860
 2020-03-05 2020-06-01
 Sweden hCoV-19/Sweden/20-50150/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_455861
 2020-03-05 2020-06-01
 Sweden hCoV-19/Sweden/20-50154/2020
 C241T C3037T C14408T G22583A A23403G

EPI_ISL_455863
 2020-03-05 2020-06-01
 Sweden hCoV-19/Sweden/20-50194/2020
 C241T C3037T C14408T G22583A A23403G

EPI_ISL_455864
 2020-03-05 2020-06-01
 Sweden hCoV-19/Sweden/20-50196/2020
 C241T C3037T C14408T A23403G C27046T G27506T GGG28881AAC

EPI_ISL_455867
 2020-03-05 2020-06-01
 Sweden hCoV-19/Sweden/20-50201/2020
 C241T C3037T C14408T A23403G C23575T G23587C

EPI_ISL_455868
 2020-03-05 2020-06-01
 Sweden hCoV-19/Sweden/20-50202/2020
 C241T C3037T C14408T G17658T G22583A A23403G T24152C

EPI_ISL_455958
 2020-03-05 2020-06-01
 Belgium hCoV-19/Belgium/ULG-10170/2020
 C241T C3037T C5175T T11638C C14408T A23403G GGG28881AAC C29708T G29736T

EPI_ISL_464417
 2020-03-05 2020-06-11
 United Kingdom hCoV-19/England/201080001/2020
 C241T C3037T C14408T A23403G GGG28881AAC G29256T

EPI_ISL_464423
 2020-03-05 2020-06-11
 United Kingdom hCoV-19/England/201080010/2020
 C241T T586W C3037T C14408T A23403G C25350T

EPI_ISL_464427
 2020-03-05 2020-06-11
 United Kingdom hCoV-19/England/201080017/2020
 G11083T C14805T G22464T C23707T G26144T T27384C

EPI_ISL_464432
 2020-03-05 2020-06-11
 United Kingdom hCoV-19/England/201080027/2020
 A2480G C2558T G11083T C14805T T21072C G26144T

EPI_ISL_464447
 2020-03-05 2020-06-11
 United Kingdom hCoV-19/England/201080056/2020
 C241T C3037T G3994T C14408T G15910T TTA21991- A23403G

EPI_ISL_464449
 2020-03-05 2020-06-11
 United Kingdom hCoV-19/England/201080059/2020
 C241T C3037T C14408T A23403G

EPI_ISL_464467
 2020-03-05 2020-06-11
 United Kingdom hCoV-19/England/201080091/2020
 A39R C241T C3037T C14408T T17835C A23403G

EPI_ISL_464473
 2020-03-05 2020-06-11
 United Kingdom hCoV-19/England/201080164/2020
 T514C ATG1605- A28973T

EPI_ISL_464479
 2020-03-05 2020-06-11
 United Kingdom hCoV-19/England/201081250/2020
 G1397A C2511T G11083T T17659G C23625T C28253Y T28688Y C28849G G29742T

EPI_ISL_464480
 2020-03-05 2020-06-11
 United Kingdom hCoV-19/England/20108125404/2020
 G1397A G11083T T17659G C23625T G28242K T28688C C28849G G29742T

EPI_ISL_464545
 2020-03-05 2020-06-11
 United Kingdom hCoV-19/England/20109019704/2020
 A2480G C2558T G11083T C14805T G26144T

EPI_ISL_466927 LR824035
 2020-03-05 2020-06-12
 Switzerland 100002
 C241T C835Y C3037T C3096Y G3243R AA3361WW C3597Y A5257W C5497Y A6105W T7302Y T11182Y G12838R C14408T C15324T C15328Y T16614Y A19437W A19767M G20291K G20730R AC20761MY T20765Y GA20781KW G21508R G21604S T21628Y C22347M G22644K C22735Y A23403G C23435Y C24213Y A25591R A25986R T26094Y C26735Y C27002Y A27062M C27219Y G28727S C29750M C29754M C29762M C29769M T29772K A29796R

EPI_ISL_469079
 2020-03-05 2020-06-17
 Sweden hCoV-19/Sweden/20-08089/2020
 C241T C3037T G5572T C14408T A23403G A25024G C27046T GGG28881AAC

EPI_ISL_475843
 2020-03-05 2020-06-25
 Austria hCoV-19/Austria/CeMM0413/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1397A G11083T G14653A C18252T T28688C G29742T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475853
 2020-03-05 2020-06-25
 Austria hCoV-19/Austria/CeMM0425/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A T25304C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475866
 2020-03-05 2020-06-25
 Austria hCoV-19/Austria/CeMM0449/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15277T C15324T A16734G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476797
 2020-03-05 2020-06-26
 Singapore hCoV-19/Singapore/28nan/2020
 CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_479807
 2020-03-05 2020-07-01
 Japan hCoV-19/Japan/PG-0040/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTT1- C8782T G16381A T17877C T28144C G28878A G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479815
 2020-03-05 2020-07-01
 Japan hCoV-19/Japan/PG-0052/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C8782T G16381A T17877C T28144C G28878A G29742A AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_479836
 2020-03-05 2020-07-01
 Japan hCoV-19/Japan/PG-0089/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C11752T T18144A C19170A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479886
 2020-03-05 2020-07-01
 Japan hCoV-19/Japan/PG-0178/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- ATG1605- C17898T A29596G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_479887
 2020-03-05 2020-07-01
 Japan hCoV-19/Japan/PG-0179/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- ATG1605- C17898T TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_479888
 2020-03-05 2020-07-01
 Japan hCoV-19/Japan/PG-0180/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T G16381A T17877C T28144C G28878A G29742A AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_479925
 2020-03-05 2020-07-01
 Japan hCoV-19/Japan/PG-0229/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C8782T T9490C G16381A T17877C T28144C G28878A G29742A ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480034
 2020-03-05 2020-07-01
 Japan hCoV-19/Japan/PG-0364/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACT1- C8782T G16381A T17877C C26139T T28144C G28878A G29742A AATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29818-

EPI_ISL_480058
 2020-03-05 2020-07-01
 Japan hCoV-19/Japan/PG-0389/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- G3179A C6982T C8782T T28144C ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480059
 2020-03-05 2020-07-01
 Japan hCoV-19/Japan/PG-0390/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- G3179A C6982T C8782T T28144C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_480060
 2020-03-05 2020-07-01
 Japan hCoV-19/Japan/PG-0391/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- G3179A C6982T C8782T T28144C TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_482468
 2020-03-05 2020-07-03
 Peru hCoV-19/Peru/01/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTG1- C241T C3037T C14408T C15277T A21917G A23403G A26530G TTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29680-

EPI_ISL_482469
 2020-03-05 2020-07-03
 Canada hCoV-19/Canada/NS_40/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10851T C14408T A23403G G25563T ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_482575
 2020-03-05 2020-07-04
 China hCoV-19/Hangzhou/HZCDC6111/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_488337
 2020-03-05 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F671/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G C9223T G11083T C14805T T17247C G26144T C26735T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488831
 2020-03-05 2020-07-14
 United Kingdom hCoV-19/England/NORT-28115D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492987
 2020-03-05 2020-07-20
 Italy hCoV-19/Italy/NegrarVR_8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C3037T C13620T C14408T A23403G GGG28881AAC C29870A

EPI_ISL_498002
 2020-03-05 2020-07-26
 South Korea hCoV-19/Korea/KCDC2101/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- G11083T G13564T C14805T G15708T G26144T CTTAGGAGAATG29857-

EPI_ISL_500086
 2020-03-05 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A4D70/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C3373A C14408T A23403G GGG28881AAC

EPI_ISL_500091
 2020-03-05 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A4E04/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C2558T G11083T C14805T G26144T

EPI_ISL_500099
 2020-03-05 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A4FB6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_500101
 2020-03-05 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A5058/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC AAAAAAAAA29895-

EPI_ISL_500112
 2020-03-05 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A5207/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G C25350T

EPI_ISL_500391
 2020-03-05 2020-07-28
 Spain hCoV-19/Spain/COV005957/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_523199
 2020-03-05 2020-08-26
 Netherlands hCoV-19/Netherlands/GE-EMC-217/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C11109T C14408T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_524485
 2020-03-05 2020-08-28
 Switzerland hCoV-19/Switzerland/ZH-1000479112/2020
 C241T C3037T G5008T C14408T C19170T G19509A A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_525576
 2020-03-05 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-10713-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_525577
 2020-03-05 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-10715-01/2020/P1
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_527931
 2020-03-05 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42177239/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_527932
 2020-03-05 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42177430/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T C15324T A23403G TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_527933
 2020-03-05 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42177434/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_527934
 2020-03-05 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42177585/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_530030
 2020-03-05 2020-09-10
 Spain hCoV-19/Spain/MD-LP103/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G G25273C C25585T ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_537410
 2020-03-05 2020-09-16
 Spain hCoV-19/Spain/RI-CSIC-99005867/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C8782T T9477A C14805T G24386K G25979T T28144C C28657T C28863T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_539498
 2020-03-05 2020-09-18
 Spain hCoV-19/Spain/AN-ISCIII-201618/2020
 ATG1605- C5318T TTGAATATG22065- A22116T A22155G

EPI_ISL_539501
 2020-03-05 2020-09-18
 Spain hCoV-19/Spain/AR-ISCIII-201587/2020
 G11071C C11074T G11083T C24382T G26144T

EPI_ISL_539502
 2020-03-05 2020-09-18
 Spain hCoV-19/Spain/AR-ISCIII-201588/2020
 C8782T G26144T

EPI_ISL_547525
 2020-03-05 2020-09-24
 Netherlands hCoV-19/Netherlands/UT-RIVM-10080/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C T1606C C6078T C18647T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547559
 2020-03-05 2020-09-24
 Netherlands hCoV-19/Netherlands/ZH-RIVM-10076/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A26530G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560620
 2020-03-05 2020-09-29
 France hCoV-19/France/GE8767/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT325566
 2020-03-05 2020-04-10
 United States SARS-CoV-2/human/USA/FL_9590/2020
 G11083T C14805T A15779C T17247C G26144T AAAAAAAAAAAAAAAAAAAAA29883-

MT325567
 2020-03-05 2020-04-10
 United States SARS-CoV-2/human/USA/FL_9655/2020
 T490A C3177T C8782T T18736C G19684T C24034T T26729C C27635Y G28077C T28144C A29700G AAAAAAAAAAAAAAAAAAAAA29883-

MT325570
 2020-03-05 2020-04-10
 United States SARS-CoV-2/human/USA/GA_1847/2020
 T490A C3177T C8782T T18736C C24034T T26729C G28077C T28144C A29700G AAAAAAAAAAAAAAAAAAAAA29883-

MT325582
 2020-03-05 2020-04-10
 United States SARS-CoV-2/human/USA/MA_0020/2020
 C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MT325592
 2020-03-05 2020-04-10
 United States SARS-CoV-2/human/USA/NE_6605/2020
 G1440A G2891A C12651T AAAAAAAAAAAAAAAAAAAAA29883-

MT325599
 2020-03-05 2020-04-10
 United States SARS-CoV-2/human/USA/PA_1802/2020
 C241T C3037T C14408T A20268G A23403G G29734C AAAAAAAAAAAAAAAAAAAAA29883-

MT325600
 2020-03-05 2020-04-10
 United States SARS-CoV-2/human/USA/PA_1881/2020
 C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MT325605
 2020-03-05 2020-04-10
 United States SARS-CoV-2/human/USA/RI_0702/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MT325609
 2020-03-05 2020-04-10
 United States SARS-CoV-2/human/USA/UT_8199/2020
 C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

MT325623
 2020-03-05 2020-04-10
 United States SARS-CoV-2/human/USA/SC_3520/2020
 T490A C3177T C8782T T18736C C24034T T26729C G28077C T28144C A29700G AAAAAAAAAAAAAAAAAAAAA29883-

MT325626
 2020-03-05 2020-04-10
 United States SARS-CoV-2/human/USA/SC_3572/2020
 C241T C3037T G4255T C14408T A23403G A26530G AAAAAAAAAAAAAAAAAAAAA29883-

MT325629
 2020-03-05 2020-04-10
 United States SARS-CoV-2/human/USA/MA_8932/2020
 C241T C2416T C3037T C14408T A23403G G25563T G26233T AAAAAAAAAAAAAAAAAAAAA29883-

MT325630
 2020-03-05 2020-04-10
 United States SARS-CoV-2/human/USA/MA_8933/2020
 C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MT325631
 2020-03-05 2020-04-10
 United States SARS-CoV-2/human/USA/MA_9703/2020
 C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MT325634
 2020-03-05 2020-04-10
 United States SARS-CoV-2/human/USA/MA_1355/2020
 C14805T T17247C G26144T AAAAAAAAAAAAAAAAAAAAA29883-

MT873080
 2020-03-05 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00003/2020
 ATTAAA1- G11083T C14805T T17247C G26144T AAAAAAAAAAAAAA29890-

EPI_ISL_414451 LR878275
 2020-03-06 2020-03-12
 Netherlands hCoV-19/Netherlands/NoordBrabant_6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- G11083T C14805T T17247C T23926C G26144T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_414452 LR878295
 2020-03-06 2020-03-12
 Netherlands hCoV-19/Netherlands/NoordBrabant_12/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- T514C ATG1605- C4763T G29392T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_414457 LR878293
 2020-03-06 2020-03-12
 Netherlands hCoV-19/Netherlands/NoordBrabant_17/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T C7063T C14408T A23403G G28739T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_414468 LR878272
 2020-03-06 2020-03-12
 Netherlands hCoV-19/Netherlands/ZuidHolland_8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- G11083T C14805T G15535T T17247C G26144T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_414470 LR878267
 2020-03-06 2020-03-12
 Netherlands hCoV-19/Netherlands/ZuidHolland_13/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T C14408T A23403G GGG28881AAC C29362T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_414558 LR878287
 2020-03-06 2020-03-13
 Netherlands hCoV-19/Netherlands/ZuidHolland_16/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G61T G1397A G3145T G11083T C20235A T20787C T22042C T28688C T28835C G29742T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_414591
 2020-03-06 2020-03-14
 United States hCoV-19/USA/WA-UW22/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAAC19- C37T C40T G1397A G11083T T28688C G29742T AAAAAAAAAA29894-

EPI_ISL_414592
 2020-03-06 2020-03-14
 United States hCoV-19/USA/WA-UW23/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- A35W C8782T C17747T A17858G C18060T T28144C AA29902-

EPI_ISL_415435
 2020-03-06 2020-03-17
 United Kingdom hCoV-19/Wales/PHW06/2020
 ATTAAAGGTTTA1- C241T C3037T C6990T C14408T TATGTAAATAAACATGCATTCCACACACCAGCTTTTGATAAAAGTGCTTTTGTTAATTTAAAACAATTACCATTTTTCTATTACTCTGACAGTCCATGTGAGTCTCATGGAAAACAAGTAGTGTCAGATATAGATTATGTACCACTAAAGTCTGCTACGTGTATAACACGTTGCAATTTAGGTGGTGCTGTCTGTAGACATCATGCTAATGAGTACAGATTGTATCTCGATGCTTATAACATGATGATCTCAGC19297- A23403G TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_415658
 2020-03-06 2020-03-19
 Chile hCoV-19/Chile/Santiago_op2d1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_415705
 2020-03-06 2020-03-19
 Switzerland hCoV-19/Switzerland/GE4135/2020
 ATTAAAGGTTT1- C241T C3037T C14408T C15324T A23403G

EPI_ISL_415706
 2020-03-06 2020-03-19
 Switzerland hCoV-19/Switzerland/GE06207/2020
 A4T C241T C3037T C14408T C15324T A23403G

EPI_ISL_416430
 2020-03-06 2020-03-21
 Vietnam hCoV-19/Vietnam/CM295/2020
 ATTAAAGGTTTAT1- C241T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_416431
 2020-03-06 2020-03-21
 Vietnam hCoV-19/Vietnam/CM296/2020
 ATTAAAGGTTTATAC1- C241T C3037T C14408T A23403G GGG28881AAC A29879C A29885T

EPI_ISL_416454 MT252822
 2020-03-06 2020-03-21
 United States SARS-CoV-2/human/USA/WA-UW37/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACT1- T150C T153G C8782T C17747T A17858G C18060T T28144C C29870A A29903G

EPI_ISL_416509
 2020-03-06 2020-03-22
 France hCoV-19/France/B2344/2020
 C241T C1059T A1547G C3037T C14408T G21920A A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_416510
 2020-03-06 2020-03-22
 France hCoV-19/France/B2346/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_416750
 2020-03-06 2020-03-23
 France hCoV-19/France/Lyon_683/2020
 C241T C3037T C14408T C15324T C21552T A23403G C24990T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_416753
 2020-03-06 2020-03-23
 France hCoV-19/France/Lyon_06464 /2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_416754
 2020-03-06 2020-03-23
 France hCoV-19/France/Lyon_06487/2020
 C241T C3037T C14408T C15324T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_416756
 2020-03-06 2020-03-23
 France hCoV-19/France/Lyon_06531/2020
 C241T C3037T C14408T C15324T A15860G A23403G AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_417119 MT627310
 2020-03-06 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S66/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417125 MT627289
 2020-03-06 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S72/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417258
 2020-03-06 2020-03-25
 United Kingdom hCoV-19/England/20108034006/2020
 C241T C3037T C14408T C19170T G19509A A23403G GGG28881AAC

EPI_ISL_417272
 2020-03-06 2020-03-25
 United Kingdom hCoV-19/England/20109052006/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_417283
 2020-03-06 2020-03-25
 United Kingdom hCoV-19/England/20109058906/2020
 T514C ATG1605-

EPI_ISL_417285
 2020-03-06 2020-03-25
 United Kingdom hCoV-19/England/20109093606/2020
 T931C ATG1605- T12418C G20024A G26416C G29425A

EPI_ISL_417289
 2020-03-06 2020-03-25
 United Kingdom hCoV-19/England/20109094006/2020
 A1515G C9223T G11083T C14805T T17247C G26144T

EPI_ISL_417297
 2020-03-06 2020-03-25
 United Kingdom hCoV-19/England/20109099006/2020
 C241T C3037T C14408T A23403G GGG28881AAC G29256T

EPI_ISL_417301
 2020-03-06 2020-03-25
 United Kingdom hCoV-19/England/20110000606/2020
 C241T C3037T C14408T A23403G G24077T

EPI_ISL_417335
 2020-03-06 2020-03-25
 France hCoV-19/France/Lyon_06573/2020
 ATG1605- C3787T C12621T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_417336
 2020-03-06 2020-03-25
 France hCoV-19/France/Lyon_0668/2020
 C241T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_417385
 2020-03-06 2020-03-25
 Australia hCoV-19/Australia/NSW19/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1397A A10912G G11083T T22213C T28688C C29563T G29742T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417387
 2020-03-06 2020-03-25
 Australia hCoV-19/Australia/NSW24/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C884T G1397A G8653T G11083T C24904T T28688C G29742T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417425
 2020-03-06 2020-03-25
 Belgium hCoV-19/Belgium/VBK-03061/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C6628T C14408T A23403G GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_417684
 2020-03-06 2020-03-27
 Iceland hCoV-19/Iceland/54/2020
 C241T C3037T T3862A C14408T A23403G C27046T C28344A GGG28881AAC

EPI_ISL_417692
 2020-03-06 2020-03-27
 Iceland hCoV-19/Iceland/57/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_417731
 2020-03-06 2020-03-27
 Iceland hCoV-19/Iceland/61/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_417757
 2020-03-06 2020-03-27
 Iceland hCoV-19/Iceland/62/2020
 C241T C3037T C14408T A23403G C24054T A25958G C27046T GGG28881AAC

EPI_ISL_417852
 2020-03-06 2020-03-27
 Iceland hCoV-19/Iceland/56/2020
 C241T C3037T C14408T A23403G A25958G C27046T GGG28881AAC

EPI_ISL_417853
 2020-03-06 2020-03-27
 Iceland hCoV-19/Iceland/59/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_417877
 2020-03-06 2020-03-27
 Slovakia hCoV-19/Slovakia/SK-BMC1/2020
 C241T C884T C3037T C14408T A23403G A26530G

EPI_ISL_417879
 2020-03-06 2020-03-27
 Slovakia hCoV-19/Slovakia/SK-BMC5/2020
 C241T C2416T C3037T G8371T C14408T A23403G G25563T

EPI_ISL_418012
 2020-03-06 2020-03-28
 Portugal hCoV-19/Portugal/PT0027/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G C29144T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_418516
 2020-03-06 2020-03-30
 Ireland hCoV-19/Ireland/21023/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC C29095T

EPI_ISL_418548
 2020-03-06 2020-03-30
 Ireland hCoV-19/Ireland/21145/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_418794
 2020-03-06 2020-03-31
 Belgium hCoV-19/Belgium/VHRA-030644/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2893G C3037T C14408T A20276G A23403G A26530G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_418795
 2020-03-06 2020-03-31
 Belgium hCoV-19/Belgium/NKR-030645/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_418805
 2020-03-06 2020-03-31
 Belgium hCoV-19/Belgium/VPE-030650/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G9388T C11020T C18501T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_418818
 2020-03-06 2020-03-31
 Canada hCoV-19/Canada/BC_1318414/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_418981
 2020-03-06 2020-03-31
 Belgium hCoV-19/Belgium/VRAR-030643/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A8072G C14408T T15504G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_419658
 2020-03-06 2020-04-03
 Austria hCoV-19/Austria/CeMM0005/2020
 T10721K G11083T C14805T T17247C G26144T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_420105
 2020-03-06 2020-04-05
 Singapore hCoV-19/Singapore/28/2020
 ATTAAAGGTTTAT1- TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_420294
 2020-03-06 2020-04-06
 Slovenia hCoV-19/Slovenia/4584/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C3037T C14408T TTA21991- A23403G -29904AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

EPI_ISL_420315
 2020-03-06 2020-04-06
 Belgium hCoV-19/Belgium/RYR-030649/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1487A C2094T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420321
 2020-03-06 2020-04-06
 Belgium hCoV-19/Belgium/WWM-030665/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420326
 2020-03-06 2020-04-06
 Belgium hCoV-19/Belgium/AKM-030670/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A13947T C14408T C21676T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420328
 2020-03-06 2020-04-06
 Belgium hCoV-19/Belgium/VGA-030672/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4396G C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420332
 2020-03-06 2020-04-06
 Belgium hCoV-19/Belgium/WAM-030676/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420333
 2020-03-06 2020-04-06
 Belgium hCoV-19/Belgium/RS-030677/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1487A C3037T C14408T A23403G GGG28881AAC G29690T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420335
 2020-03-06 2020-04-06
 Belgium hCoV-19/Belgium/CD-030679/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420336
 2020-03-06 2020-04-06
 Belgium hCoV-19/Belgium/PA-030680/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420340
 2020-03-06 2020-04-06
 Belgium hCoV-19/Belgium/MJP-030684/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1487A C2094T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420341
 2020-03-06 2020-04-06
 Belgium hCoV-19/Belgium/LM-030685/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420342
 2020-03-06 2020-04-06
 Belgium hCoV-19/Belgium/ECC-030686/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A26530G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420343
 2020-03-06 2020-04-06
 Belgium hCoV-19/Belgium/BM-030687/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4320T C14408T A23403G G25563T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420345
 2020-03-06 2020-04-06
 Belgium hCoV-19/Belgium/MC-030689/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420347
 2020-03-06 2020-04-06
 Belgium hCoV-19/Belgium/DA-030691/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3130T C14408T A23403G A26530G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420350
 2020-03-06 2020-04-06
 Belgium hCoV-19/Belgium/BDW-030694/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420351
 2020-03-06 2020-04-06
 Belgium hCoV-19/Belgium/VMC-030695/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1376T C3037T A8072G C14408T C18131T A23403G GGG28881AAC C29774T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420355
 2020-03-06 2020-04-06
 Belgium hCoV-19/Belgium/RR-030699/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A13947T C14408T G19525T C21676T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420356
 2020-03-06 2020-04-06
 Belgium hCoV-19/Belgium/MJP-0306100/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420441
 2020-03-06 2020-04-06
 Belgium hCoV-19/Belgium/RA-030664/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C5654T C14408T A23403G C24034T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420446
 2020-03-06 2020-04-06
 Belgium hCoV-19/Belgium/DAL-030650/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420449
 2020-03-06 2020-04-06
 Belgium hCoV-19/Belgium/VHC-030655/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T A4050C G4255T T13402G C14408T A23403G A26530G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_424841
 2020-03-06 2020-04-13
 United States hCoV-19/USA/SC_3569/2020
 T490A C3177T C8782T T18736C C24034T T26729C G28077C T28144C A29700G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424844
 2020-03-06 2020-04-13
 United States hCoV-19/USA/MA_3672/2020
 C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424845
 2020-03-06 2020-04-13
 United States hCoV-19/USA/MA_3699/2020
 C241T C2416T C3037T C3261M C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424846
 2020-03-06 2020-04-13
 United States hCoV-19/USA/MA_3878/2020
 C241T C2416T C3037T C14408T C17747Y A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424852
 2020-03-06 2020-04-13
 United States hCoV-19/USA/DC_0004/2020
 C8782T C16667Y C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424856
 2020-03-06 2020-04-13
 United States hCoV-19/USA/FL_9656/2020
 C8782T A16467G C17747T A17858G C18060T C23185T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424857
 2020-03-06 2020-04-13
 United States hCoV-19/USA/FL_1177/2020
 C241T C3037T C5467T C8389T C14408T A23403G T25245Y G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424867
 2020-03-06 2020-04-13
 United States hCoV-19/USA/KS_4126/2020
 C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424870
 2020-03-06 2020-04-13
 United States hCoV-19/USA/MO_4470/2020
 C241T C313T C3037T C13384T C14408T A23403G GGG28881AAC C29353T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424871
 2020-03-06 2020-04-13
 United States hCoV-19/USA/NC_6999/2020
 C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424876
 2020-03-06 2020-04-13
 United States hCoV-19/USA/NH_0029/2020
 C241T C3037T C5007T C14408T C14554T A23403G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424877
 2020-03-06 2020-04-13
 United States hCoV-19/USA/NH_0033/2020
 C241T C1059T C3037T T13006C C14408T A23403G G25563T C25688T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424886
 2020-03-06 2020-04-13
 United States hCoV-19/USA/PA_4405/2020
 C241T C3037T C14408T GG18505RK C18877T G19847A A23403G G25563T A28480T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424907
 2020-03-06 2020-04-13
 United States hCoV-19/USA/VA_6171/2020
 A361G C8782T G22468T T25559G T28144C G28878A G29742A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424914
 2020-03-06 2020-04-13
 United States hCoV-19/USA/MA_2652/2020
 C241T C2416T C3037T C14408T A23403G G25563T G26109T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424915
 2020-03-06 2020-04-13
 United States hCoV-19/USA/MA_3614/2020
 C241T C2416T C3037T C14408T A23403G G25563T G26233T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424916
 2020-03-06 2020-04-13
 United States hCoV-19/USA/MA_3616/2020
 C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424917
 2020-03-06 2020-04-13
 United States hCoV-19/USA/MA_3623/2020
 C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424918
 2020-03-06 2020-04-13
 United States hCoV-19/USA/MA_3626/2020
 C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424920
 2020-03-06 2020-04-13
 United States hCoV-19/USA/MA_3653/2020
 C241T C2416T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_425796
 2020-03-06 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR65/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_425797
 2020-03-06 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR66/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C20823T A23403G C23422T T23849C C29686T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425802
 2020-03-06 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR71/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425805
 2020-03-06 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR75/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425808
 2020-03-06 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR78/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C23422T T23849C C29686T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_426041
 2020-03-06 2020-04-14
 United States hCoV-19/USA/NY-Wadsworth-11180-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426042
 2020-03-06 2020-04-14
 United States hCoV-19/USA/NY-Wadsworth-11202-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C2416T C3037T C11651T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426043
 2020-03-06 2020-04-14
 United States hCoV-19/USA/NY-Wadsworth-11284-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426044
 2020-03-06 2020-04-14
 United States hCoV-19/USA/NY-Wadsworth-11291-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T A8882G C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426045
 2020-03-06 2020-04-14
 United States hCoV-19/USA/NY-Wadsworth-11344-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426046
 2020-03-06 2020-04-14
 United States hCoV-19/USA/NY-Wadsworth-11353-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426047
 2020-03-06 2020-04-14
 United States hCoV-19/USA/NY-Wadsworth-11354-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426048
 2020-03-06 2020-04-14
 United States hCoV-19/USA/NY-Wadsworth-11379-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426049
 2020-03-06 2020-04-14
 United States hCoV-19/USA/NY-Wadsworth-11380-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C4084T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426292
 2020-03-06 2020-04-15
 United States hCoV-19/USA/NY-Wadsworth-11207-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C2416T C3037T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_427293
 2020-03-06 2020-04-18
 Brazil hCoV-19/Brazil/BA-510/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C313T C3037T C14408T A23403G A26945T GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_429139
 2020-03-06 2020-04-23
 Sweden hCoV-19/Sweden/20-50123/2020
 C241T C3037T A12790G A13308G C13568T C14408T A23403G

EPI_ISL_429140
 2020-03-06 2020-04-23
 Sweden hCoV-19/Sweden/20-50125/2020
 

EPI_ISL_429141
 2020-03-06 2020-04-23
 Sweden hCoV-19/Sweden/20-50130/2020
 C241T C3037T A12790G C13568T C14408T A23403G

EPI_ISL_429142
 2020-03-06 2020-04-23
 Sweden hCoV-19/Sweden/20-50131/2020
 C241T C3037T A12790G C13568T C14408T A23403G

EPI_ISL_429143
 2020-03-06 2020-04-23
 Sweden hCoV-19/Sweden/20-50132/2020
 C241T C313T C3037T G4109A C14408T A23403G GGG28881AAC

EPI_ISL_429144
 2020-03-06 2020-04-23
 Sweden hCoV-19/Sweden/20-50133/2020
 C241T C3037T A12790G C13568T C14408T A23403G

EPI_ISL_429239
 2020-03-06 2020-04-23
 China hCoV-19/Yunnan/0306-466/2020
 ATG1431- G15910T

EPI_ISL_429346
 2020-03-06 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI117/2020
 C241T C3037T C14408T A23403G

EPI_ISL_430124 MT627614
 2020-03-06 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S270/2020
 C8782T T15927G C17747T A17858G C18060T C18401T C26936T T28144C

EPI_ISL_430129 MT627624
 2020-03-06 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S275/2020
 C8782T C16887T C17747T A17858G C18060T T28144C

EPI_ISL_430141 MT627633
 2020-03-06 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S287/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_430142 MT627629
 2020-03-06 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S288/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_430278 MT632619
 2020-03-06 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S240/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_430297
 2020-03-06 2020-04-26
 South Africa hCoV-19/South Africa/R02827/2020
 

EPI_ISL_430861
 2020-03-06 2020-04-28
 Sweden hCoV-19/Sweden/20-50129/2020
 C241T C3037T C10252T A12790G C13568T C14408T A23403G

EPI_ISL_435609
 2020-03-06 2020-05-05
 United States hCoV-19/USA/CA-SCCPHD-UC130/2020
 G29711T

EPI_ISL_437660
 2020-03-06 2020-05-11
 Denmark hCoV-19/Denmark/ALAB-SSI-245/2020
 C241T C3037T C14408T A23403G

EPI_ISL_438009
 2020-03-06 2020-05-12
 Italy hCoV-19/Austria/CeMM0163/2020
 C241T C3037T G3994T C14408T T22521K A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_438010
 2020-03-06 2020-05-12
 Austria hCoV-19/Austria/CeMM0165/2020
 C241T C3037T G12832A C14408T A23403G AG28877WS GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_438011
 2020-03-06 2020-05-12
 Austria hCoV-19/Austria/CeMM0166/2020
 C241T C3037T G12832A C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_438012
 2020-03-06 2020-05-12
 Austria hCoV-19/Austria/CeMM0167/2020
 C241T C3037T C9857T C14408T A23403G C27046T GGG28881AAC AAAA29900-

EPI_ISL_445245
 2020-03-06 2020-05-15
 Chile hCoV-19/Chile/Santiago_3/2020
 ATTAAAGGTTTA1- C8782T T9477A C14805T A15165R G25979T T28144C C28657T C28863T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_447841 MT472624
 2020-03-06 2020-05-14
 United States SARS-CoV-2/human/USA/FL-CDC-7619/2020
 C241T C683Y C3037T G4263K C4703Y A4725W C5184Y C5654Y A5891R C12123Y C14408T C14662Y C18877T A23403G G25563T G25696K G26596K C28475Y C28687Y AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_452353
 2020-03-06 2020-05-27
 China hCoV-19/Beijing/DT-travelIT02/2020
 C241T C3037T T8022G C14408T C18568T A23403G

EPI_ISL_452763
 2020-03-06 2020-05-27
 Spain hCoV-19/Spain/COV000703/2020
 C8782T T9477A C14805T C15654T G25979T T28144C C28657T C28863T

EPI_ISL_452773
 2020-03-06 2020-05-27
 Spain hCoV-19/Spain/COV000691/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T

EPI_ISL_454464
 2020-03-06 2020-05-28
 Sweden hCoV-19/Sweden/20-08092/2020
 C241T C3037T C14408T G22583A A23403G

EPI_ISL_454465
 2020-03-06 2020-05-28
 Sweden hCoV-19/Sweden/20-08093/2020
 C241T C843T C3037T C3743T C14408T T22153C G22583A A23403G

EPI_ISL_454466
 2020-03-06 2020-05-28
 Sweden hCoV-19/Sweden/20-08094/2020
 C241T C843T C3037T C14408T G22583A A23403G

EPI_ISL_454467
 2020-03-06 2020-05-28
 Sweden hCoV-19/Sweden/20-08095/2020
 C241T C3037T C14408T A23403G C24138T GGG28881AAC

EPI_ISL_454468
 2020-03-06 2020-05-28
 Sweden hCoV-19/Sweden/20-08096/2020
 C241T C3037T C3373A C14408T C23271T A23403G GGG28881AAC

EPI_ISL_454469
 2020-03-06 2020-05-28
 Sweden hCoV-19/Sweden/20-08098/2020
 C241T C3037T C14408T A23403G C24138T GGG28881AAC

EPI_ISL_454470
 2020-03-06 2020-05-28
 Sweden hCoV-19/Sweden/20-08099/2020
 C241T C3037T C10377T C14408T T23084C A23403G GGG28881AAC

EPI_ISL_454471
 2020-03-06 2020-05-28
 Sweden hCoV-19/Sweden/20-08100/2020
 C241T C3037T C9857T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_454475
 2020-03-06 2020-05-28
 Sweden hCoV-19/Sweden/20-08104/2020
 C241T C3037T C14408T A23403G

EPI_ISL_454757
 2020-03-06 2020-05-29
 Netherlands hCoV-19/Netherlands/NoordHolland_10008/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_454889
 2020-03-06 2020-05-29
 Sweden hCoV-19/Sweden/20-50208/2020
 C241T C3037T C14408T C19718T G22583A A23403G

EPI_ISL_455323
 2020-03-06 2020-05-29
 Spain hCoV-19/Spain/Andalucia201636/2020
 AT1- T5077C A5222G T6998G A7015T C8782T TG8827AT T10962G G11083T C14805T T19346C T19713A T19826C A23403G C23707T T27384C T27560C A29285G

EPI_ISL_455595
 2020-03-06 2020-06-01
 Australia hCoV-19/Australia/VPRL002/2020
 G11083T C14805T T17247C G26144T

EPI_ISL_455713
 2020-03-06 2020-06-01
 Vietnam hCoV-19/Vietnam/VNHN_148/2020
 A1- A4G C241T C3037T GT5513A C14408T A23403G T27794A GGG28881AAC AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_455865
 2020-03-06 2020-06-01
 Sweden hCoV-19/Sweden/20-50198/2020
 C241T C3037T C14408T A21875G A23403G C27046T GGG28881AAC T29834G

EPI_ISL_455866
 2020-03-06 2020-06-01
 Sweden hCoV-19/Sweden/20-50199/2020
 C241T C3037T C5730T C14408T A23403G GGG28881AAC

EPI_ISL_455869
 2020-03-06 2020-06-01
 Sweden hCoV-19/Sweden/20-50206/2020
 C241T C3037T C14408T G15850T G17658T G22583A A23403G

EPI_ISL_455870
 2020-03-06 2020-06-01
 Sweden hCoV-19/Sweden/20-50209/2020
 C241T C3037T C14408T G22583A A23403G

EPI_ISL_455871
 2020-03-06 2020-06-01
 Sweden hCoV-19/Sweden/20-50212/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_455872
 2020-03-06 2020-06-01
 Sweden hCoV-19/Sweden/20-50213/2020
 C241T C3037T C14408T C23393T A23403G

EPI_ISL_455875
 2020-03-06 2020-06-01
 Sweden hCoV-19/Sweden/20-50218/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_455876
 2020-03-06 2020-06-01
 Sweden hCoV-19/Sweden/20-50219/2020
 C241T C3037T C14408T A23403G

EPI_ISL_455907
 2020-03-06 2020-06-01
 Sweden hCoV-19/Sweden/20-50266/2020
 C241T C3037T C14408T A23403G A26530G

EPI_ISL_457700
 2020-03-06 2020-06-02
 Italy hCoV-19/Italy/2629/2020
 ATTAAA1- C241T C3037T C14408T A23403G GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_460333 MT520408
 2020-03-06 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00428/2020
 ATTAAA1- C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_464438
 2020-03-06 2020-06-11
 United Kingdom hCoV-19/England/201080039/2020
 C241T C3037T C14408T G20434T A22625R A23403G C25350T C26858T

EPI_ISL_464444
 2020-03-06 2020-06-11
 United Kingdom hCoV-19/England/201080053/2020
 C241T C3037T C14408T A23403G C27046T GGG28881RRS

EPI_ISL_464450
 2020-03-06 2020-06-11
 United Kingdom hCoV-19/England/201080061/2020
 C241T C3037T C14408T A23403G C25350T

EPI_ISL_464464
 2020-03-06 2020-06-11
 United Kingdom hCoV-19/England/201080081/2020
 G1397A G2246A C3817Y G11083T C27549Y T28688Y G29742T

EPI_ISL_464525
 2020-03-06 2020-06-11
 United Kingdom hCoV-19/England/20109007104/2020
 C241T C3037T C14408T T19839C A23403G GGG28881AAC

EPI_ISL_464549
 2020-03-06 2020-06-11
 United Kingdom hCoV-19/England/20109028804/2020
 C241T C2638Y C2940T C3037T C14408T A23403G

EPI_ISL_466936 LR824043
 2020-03-06 2020-06-12
 Switzerland 100011
 C241T G284R C3037T C12896T C14408T A19298W G19481R T22384Y T22516W A23403G G25952R

EPI_ISL_466937 LR824045
 2020-03-06 2020-06-12
 Switzerland 100012
 C241T C3037T C12896T C14408T A19410R C19512Y C22445M T22516W A23403G

EPI_ISL_469077
 2020-03-06 2020-06-17
 Sweden hCoV-19/Sweden/20-50216/2020
 C241T C3037T C14408T AGC19005- A23403G C27046T C28344A GGG28881AAC

EPI_ISL_475871
 2020-03-06 2020-06-25
 Austria hCoV-19/Austria/CeMM0460/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A A4284M C17518Y A20255R CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475877
 2020-03-06 2020-06-25
 Austria hCoV-19/Austria/CeMM0472/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G12832A C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475886
 2020-03-06 2020-06-25
 Austria hCoV-19/Austria/CeMM0484/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T19839C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476796
 2020-03-06 2020-06-26
 Singapore hCoV-19/Singapore/27nan/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A7479G G11083T C14805T T17247C C25572T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476903 MT827812
 2020-03-06 2020-06-27
 United States SARS-CoV-2/human/USA/WA-UW-114/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C8782T C17747T A17858G C18060T T28144C -29904AAAAAAAAAAA

EPI_ISL_479808
 2020-03-06 2020-07-01
 Japan hCoV-19/Japan/PG-0041/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C11752T C19170A AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_479816
 2020-03-06 2020-07-01
 Japan hCoV-19/Japan/PG-0053/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C11752T C19170A TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_479837
 2020-03-06 2020-07-01
 Japan hCoV-19/Japan/PG-0091/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C11752T C19170A G28857T TTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29822-

EPI_ISL_479838
 2020-03-06 2020-07-01
 Japan hCoV-19/Japan/PG-0092/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C11752T C19170A A29433G ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_479889
 2020-03-06 2020-07-01
 Japan hCoV-19/Japan/PG-0181/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C11752T G17721T TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_480061
 2020-03-06 2020-07-01
 Japan hCoV-19/Japan/PG-0392/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- G3179A C6982T C8782T G17523T T28144C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_480062
 2020-03-06 2020-07-01
 Japan hCoV-19/Japan/PG-0393/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- G3179A C6982T C8782T T28144C TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_480063
 2020-03-06 2020-07-01
 Japan hCoV-19/Japan/PG-0394/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- G3179A C6982T C8782T T28144C ATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29833-

EPI_ISL_480064
 2020-03-06 2020-07-01
 Japan hCoV-19/Japan/PG-0395/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- G3179A C6982T C8782T T28144C ATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29833-

EPI_ISL_482576
 2020-03-06 2020-07-04
 China hCoV-19/Hangzhou/HZCDC6224/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G9190T G11083T T14034C C14805T C16468T T17247C T19646C C24133T G26144T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_486663
 2020-03-06 2020-07-10
 Italy hCoV-19/Italy/Hsacco-7/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_487269
 2020-03-06 2020-07-14
 Peru hCoV-19/Peru/Peru002/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACA1- C241T C3037T C14408T C15277T A21917G A23403G A26530G ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_488253
 2020-03-06 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F617/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G24077T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488254
 2020-03-06 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F6BD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3955T C14408T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488262
 2020-03-06 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F6CC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488324
 2020-03-06 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F608/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3365T A6030G C14408T A23403G C25350T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488364
 2020-03-06 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F6AE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3955T C14408T A23403G C27046T GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_488829
 2020-03-06 2020-07-14
 United Kingdom hCoV-19/England/NORT-2811C6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G C9223T G11083T C14805T T17247C G17658R G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489836
 2020-03-06 2020-07-14
 Peru hCoV-19/Peru/Peru003/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAA1- C241T C3037T C14408T C15277T A21917G A23403G A26530G ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_489837
 2020-03-06 2020-07-14
 Peru hCoV-19/Peru/Peru004/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAA1- C241T C3037T C14408T C15277T A21917G A23403G A26530G ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_491431
 2020-03-06 2020-07-16
 Peru hCoV-19/Peru/INS-026/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAA1- C241T C813T C3037T C14408T A23403G G25429T ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_491438
 2020-03-06 2020-07-17
 Costa Rica hCoV-19/Costa Rica/INC-0026/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- C241T C3037T C14408T C21638T A23403G G26143A GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_497791
 2020-03-06 2020-07-25
 China hCoV-19/Hong Kong/HKU-200723-024/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1595A C7735T C9962T G11083T C11704T T13929C C14724T T21584G G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_500100
 2020-03-06 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A4FC5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G GGG28881AAC G29256T

EPI_ISL_500398
 2020-03-06 2020-07-28
 Spain hCoV-19/Spain/COV005964/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C8782T C8980T T9477A C14805T G25979T T28144C C28657T C28863T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_506955
 2020-03-06 2020-08-02
 South Korea hCoV-19/Korea/KCDC2161/2020
 G5572T C10808T G11083T C14805T C21575T G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_513314
 2020-03-06 2020-08-13
 Czech Republic hCoV-19/Czech Republic/NRL_1259/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25563T G26109T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_515293
 2020-03-06 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0004/2020
 ATTA1- G29711T

EPI_ISL_516634
 2020-03-06 2020-08-21
 Germany hCoV-19/Berlin/ChVir-D665-6/2020
 ATT1- C241T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_516645
 2020-03-06 2020-08-21
 Germany hCoV-19/Berlin/ChVir-D715-D799-17/2020
 ATTAAAGGTTTATAC1- C241T C3037T C14408T A23403G G29254T GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_523935
 2020-03-06 2020-08-27
 Germany hCoV-19/Germany/NW-64/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A T17803K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525536
 2020-03-06 2020-08-31
 France hCoV-19/France/ARA06391/2020
 ATT1- C241T C3037T C14408T C15324T A23403G AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_525579
 2020-03-06 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-11171-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T T22795C A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_525580
 2020-03-06 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-11244-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T G7320A C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_527739
 2020-03-06 2020-09-04
 Costa Rica hCoV-19/Costa Rica/INC-0071/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C1059T C3037T C14408T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_530031
 2020-03-06 2020-09-10
 Spain hCoV-19/Spain/MD-LP104-1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C9165T G9928T T21378C C26088T T28144C ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_538446
 2020-03-06 2020-09-17
 Singapore hCoV-19/Singapore/50nan/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A23359G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539503
 2020-03-06 2020-09-18
 Spain hCoV-19/Spain/AR-ISCIII-201596/2020
 T1483C C2836T G11071C G11083T G26144T

EPI_ISL_539504
 2020-03-06 2020-09-18
 Spain hCoV-19/Spain/AR-ISCIII-201597/2020
 T1483C C2836T G11071C G11083T G26144T

EPI_ISL_539509
 2020-03-06 2020-09-18
 Spain hCoV-19/Spain/AR-ISCIII-201687/2020
 G11071C G11083T C16466T G26144T

EPI_ISL_539510
 2020-03-06 2020-09-18
 Spain hCoV-19/Spain/AR-ISCIII-201688/2020
 T6549A A6551T G11071C G11083T C24382T G26144T

EPI_ISL_539532
 2020-03-06 2020-09-18
 Spain hCoV-19/Spain/CN-ISCIII-201810/2020
 A391G C635T A3245T T3360A C3792T T4579A A4860G A6063G C8645A T11134C C14805T T19616C T19843C G21280A A21487G T21539C T21656C C21678T T22917A A23013C A23880T A24500T T28144C C28657T C28863T T29760C ATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29850-

EPI_ISL_547524
 2020-03-06 2020-09-24
 Netherlands hCoV-19/Netherlands/UT-RIVM-10077/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T G16381A T28144C G28878A G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547526
 2020-03-06 2020-09-24
 Netherlands hCoV-19/Netherlands/UT-RIVM-10082/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4255T C14408T A23403G A26530G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566047
 2020-03-06 2020-10-01
 United Kingdom hCoV-19/England/201090128/2020
 ATTAAAGGTTTAT1- C241T C3037T C14408T C20031A A23403G C27046T GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

GWHAORP01000001
 2020-03-06 2020-09-11
 China SARS-CoV-2/human/CHN/Beijing-CP3/2020
 C241T C313T C3037T C14408T T16254C A23403G A25497G

GWHAORQ01000001
 2020-03-06 2020-09-11
 China SARS-CoV-2/human/CHN/Beijing-CP4/2020
 C241T C1059T C3037T A23403G

MT325563
 2020-03-06 2020-04-10
 United States SARS-CoV-2/human/USA/DC_0004/2020
 C8782T C16667Y C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

MT325564
 2020-03-06 2020-04-10
 United States SARS-CoV-2/human/USA/FL_1177/2020
 C241T C3037T C5467T C8389T C14408T A23403G T25245Y G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MT325568
 2020-03-06 2020-04-10
 United States SARS-CoV-2/human/USA/FL_9656/2020
 C8782T A16467G C17747T A17858G C18060T C23185T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

MT325580
 2020-03-06 2020-04-10
 United States SARS-CoV-2/human/USA/KS_4126/2020
 C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MT325583
 2020-03-06 2020-04-10
 United States SARS-CoV-2/human/USA/MA_3672/2020
 C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MT325584
 2020-03-06 2020-04-10
 United States SARS-CoV-2/human/USA/MA_3699/2020
 C241T C2416T C3037T C3261M C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MT325585
 2020-03-06 2020-04-10
 United States SARS-CoV-2/human/USA/MA_3878/2020
 C241T C2416T C3037T C14408T C17747Y A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MT325588
 2020-03-06 2020-04-10
 United States SARS-CoV-2/human/USA/MO_4470/2020
 C241T C313T C3037T C13384T C14408T A23403G GGG28881AAC C29353T AAAAAAAAAAAAAAAAAAAAA29883-

MT325591
 2020-03-06 2020-04-10
 United States SARS-CoV-2/human/USA/NC_6999/2020
 C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

MT325594
 2020-03-06 2020-04-10
 United States SARS-CoV-2/human/USA/NH_0029/2020
 C241T C3037T C5007T C14408T C14554T A23403G AAAAAAAAAAAAAAAAAAAAA29883-

MT325595
 2020-03-06 2020-04-10
 United States SARS-CoV-2/human/USA/NH_0033/2020
 C241T C1059T C3037T T13006C C14408T A23403G G25563T C25688T AAAAAAAAAAAAAAAAAAAAA29883-

MT325604
 2020-03-06 2020-04-10
 United States SARS-CoV-2/human/USA/PA_4405/2020
 C241T C3037T C14408T GG18505RK C18877T G19847A A23403G G25563T A28480T AAAAAAAAAAAAAAAAAAAAA29883-

MT325606
 2020-03-06 2020-04-10
 United States SARS-CoV-2/human/USA/SC_3569/2020
 T490A C3177T C8782T T18736C C24034T T26729C G28077C T28144C A29700G AAAAAAAAAAAAAAAAAAAAA29883-

MT325616
 2020-03-06 2020-04-10
 United States SARS-CoV-2/human/USA/MA_3623/2020
 C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MT325628
 2020-03-06 2020-04-10
 United States SARS-CoV-2/human/USA/VA_6171/2020
 A361G C8782T G22468T T25559G T28144C G28878A G29742A AAAAAAAAAAAAAAAAAAAAA29883-

MT325635
 2020-03-06 2020-04-10
 United States SARS-CoV-2/human/USA/MA_2652/2020
 C241T C2416T C3037T C14408T A23403G G25563T G26109T AAAAAAAAAAAAAAAAAAAAA29883-

MT325636
 2020-03-06 2020-04-10
 United States SARS-CoV-2/human/USA/MA_3614/2020
 C241T C2416T C3037T C14408T A23403G G25563T G26233T AAAAAAAAAAAAAAAAAAAAA29883-

MT325637
 2020-03-06 2020-04-10
 United States SARS-CoV-2/human/USA/MA_3616/2020
 C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MT325638
 2020-03-06 2020-04-10
 United States SARS-CoV-2/human/USA/MA_3626/2020
 C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MT325640
 2020-03-06 2020-04-10
 United States SARS-CoV-2/human/USA/MA_3653/2020
 C241T C2416T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MT396241
 2020-03-06 2020-04-21
 China SARS-CoV-2/human/CHN/YN-0306-466/2020
 ATG1431- G15910T

EPI_ISL_414551
 2020-03-07 2020-03-13
 Netherlands hCoV-19/Netherlands/Utrecht_47/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_414552
 2020-03-07 2020-03-13
 Netherlands hCoV-19/Netherlands/Utrecht_46/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_414559 LR878303
 2020-03-07 2020-03-13
 Netherlands hCoV-19/Netherlands/ZuidHolland_17/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3145T C14408T A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_414589 MT188340
 2020-03-07 2020-03-13
 United States USA/MN2-MDH2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C C17410T AAAA29900-

EPI_ISL_414619
 2020-03-07 2020-03-15
 United States hCoV-19/USA/WA-UW32/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAGATGGA1- C6317T C8782T C9693T C17747T A17858G C18060T T28144C

EPI_ISL_414621
 2020-03-07 2020-03-15
 United States hCoV-19/USA/WA-UW34/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGG1- C8782T C17747T A17858G C18060T T28144C AAAAAAA29897-

EPI_ISL_414643
 2020-03-07 2020-03-15
 Finland hCoV-19/Finland/FIN-508/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC GTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29810-

EPI_ISL_415491 LR878112
 2020-03-07 2020-03-17
 Netherlands hCoV-19/Netherlands/NA_34/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- G11083T C14805T T17247C G26144T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415660
 2020-03-07 2020-03-19
 Chile hCoV-19/Chile/Santiago_op3d1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_415708
 2020-03-07 2020-03-19
 Switzerland hCoV-19/Switzerland/GE4984/2020
 ATTAAAGG1- C241T C3037T C13862T C14408T A23403G C28836T

EPI_ISL_416428
 2020-03-07 2020-03-21
 Vietnam hCoV-19/Vietnam/39607/2020
 ATTAAAGGT1- C241T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_416432
 2020-03-07 2020-03-21
 Saudi Arabia hCoV-19/SaudiArabia/KAIMRC-Alghoribi/2020
 AT1CC A4G T10A T13A -16CTTA C6312A G11083T C13730T C23929T A25615G C28311T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_416455 MT252823
 2020-03-07 2020-03-21
 United States SARS-CoV-2/human/USA/WA-UW38/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATA1- C8782T TG9704CT C17747T A17858G C18060T T28144C -29904AAANANANDAA

EPI_ISL_416511
 2020-03-07 2020-03-22
 France hCoV-19/France/B2348/2020
 C241T C1059T C3037T A5608G C14408T A23403G G25563T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_416512
 2020-03-07 2020-03-22
 France hCoV-19/France/B2349/2020
 C241T C1059T C3037T C14408T G21920A A23403G G25563T CCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29801-

EPI_ISL_416513
 2020-03-07 2020-03-22
 France hCoV-19/France/B2351/2020
 C241T C1059T C3037T C14408T C18928T G21920A A23403G G25563T AAAAAAAAAAAAAAAAAAAAAA29882-

EPI_ISL_416733
 2020-03-07 2020-03-23
 United Kingdom hCoV-19/England/SHEF-BFCEE/2020
 A1515G C9223T G11083T C14805T T17247C G26144T

EPI_ISL_416757
 2020-03-07 2020-03-23
 France hCoV-19/France/Bourg-en-Bresse_06678/2020
 C241T C3037T C14408T C15324T G21724T A23403G C25433T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_417007
 2020-03-07 2020-03-23
 Spain hCoV-19/Spain/Galicia201663/2020
 C241T C3037T C14408T A20268G A23403G AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_417009
 2020-03-07 2020-03-23
 Belgium hCoV-19/Belgium/ULG-3665/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A3859G G11083T C14805T T17247C C22323T G26144T A29598G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417164 MT605817
 2020-03-07 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S111/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417186 MT324062
 2020-03-07 2020-04-10
 South Africa SARS-CoV-2/human/ZAF/R03006/2020
 C241T C3037T C13620T C14408T C21595T A23403G

EPI_ISL_417276
 2020-03-07 2020-03-25
 United Kingdom hCoV-19/England/20109052506/2020
 G1125A ATG1605- C3787T C27911T

EPI_ISL_417279
 2020-03-07 2020-03-25
 United Kingdom hCoV-19/England/20109053606/2020
 C241T C3037T C14408T C20031A A23403G C27046T GGG28881AAC G29392T

EPI_ISL_417280
 2020-03-07 2020-03-25
 United Kingdom hCoV-19/England/20109054806/2020
 C21T A1515G C9223T G11083T C14805T T17247C G26144T

EPI_ISL_417337
 2020-03-07 2020-03-25
 France hCoV-19/France/Lyon_06625/2020
 C241T C3037T A11935C C14408T C15324T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_417338
 2020-03-07 2020-03-25
 France hCoV-19/France/Macon_06756/2020
 C241T C1059T C1684T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_417340
 2020-03-07 2020-03-25
 France hCoV-19/France/Bourg-en-Bresse_06813/2020
 C241T C1059T C3037T C3176T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_417705
 2020-03-07 2020-03-27
 Iceland hCoV-19/Iceland/65/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_417855
 2020-03-07 2020-03-27
 Iceland hCoV-19/Iceland/63/2020
 C241T C1059T C3037T C14408T G20419T A23403G G25563T

EPI_ISL_417857
 2020-03-07 2020-03-27
 Iceland hCoV-19/Iceland/66/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_417878
 2020-03-07 2020-03-27
 Slovakia hCoV-19/Slovakia/SK-BMC2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C2416T C3037T C14408T A23403G G25563T G26233T

EPI_ISL_417992
 2020-03-07 2020-03-28
 Portugal hCoV-19/Portugal/PT0007/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3373A C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_417997
 2020-03-07 2020-03-28
 Portugal hCoV-19/Portugal/PT0012/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_417999
 2020-03-07 2020-03-28
 Portugal hCoV-19/Portugal/PT0014/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_418013
 2020-03-07 2020-03-28
 Portugal hCoV-19/Portugal/PT0028/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3373A C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_418334
 2020-03-07 2020-03-07
 Canada hCoV-19/Canada/ON_PHL4069/2020
 A1- T8767C C8782T T10771C C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418346
 2020-03-07 2020-03-07
 Canada hCoV-19/Canada/ON_PHL0743/2020
 A1- C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418349
 2020-03-07 2020-03-07
 Canada hCoV-19/Canada/ON_PHL3650/2020
 A1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418371
 2020-03-07 2020-03-07
 Canada hCoV-19/Canada/ON_PHL2653/2020
 A1- C241T C3037T C9246T C14408T A23403G T27299C GGG28881AAC T29148C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418667
 2020-03-07 2020-03-30
 United Kingdom hCoV-19/England/20109047803/2020
 C241T C3037T C14408T A23403G

EPI_ISL_418852
 2020-03-07 2020-03-31
 Canada hCoV-19/Canada/BC_8718874/2020
 C8782T A17858G C18060T T28144C

EPI_ISL_419235
 2020-03-07 2020-04-01
 Spain hCoV-19/Spain/Madrid201706/2020
 C241T C3037T G11719A C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_419237
 2020-03-07 2020-04-01
 Spain hCoV-19/Spain/Madrid201738/2020
 G11083T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_419736 MT450932
 2020-03-07 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC17/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- T490A C3177T C8782T T18736C G19684T C24034T T26729C C27635T G28077C T28144C A29700G

EPI_ISL_419737 MT450933
 2020-03-07 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC18/2020
 ATTAA1- A2480G C2558T T6971C G6975T G6977A C8895Y C9170T G11083T C14805T C23034G G26144T

EPI_ISL_420316
 2020-03-07 2020-04-06
 Belgium hCoV-19/Belgium/QOJ-030751/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C3037T A4050C T8022G T13002C C14408T CA23266AG A23403G G23441C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_420318
 2020-03-07 2020-04-06
 Belgium hCoV-19/Belgium/TG-030757/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C5886T A12307G T13402G C14408T A23403G GGG28881AAC GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_420323
 2020-03-07 2020-04-06
 Belgium hCoV-19/Belgium/BJ-030767/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12880T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420327
 2020-03-07 2020-04-06
 Belgium hCoV-19/Belgium/HL-030771/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C23393T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420352
 2020-03-07 2020-04-06
 Belgium hCoV-19/Belgium/DCS-030796/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420450
 2020-03-07 2020-04-06
 Belgium hCoV-19/Belgium/KN-030756/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T A4050C T13402G T13408C C14408T C15324T C15371T A23403G G28690T T28785G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_420451
 2020-03-07 2020-04-06
 Belgium hCoV-19/Belgium/HC-030760/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G4255T G8687A T13402G C14408T T16456G A23403G A26530G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_420600
 2020-03-07 2020-04-06
 Argentina hCoV-19/Argentina/C121/2020
 A26C C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_422804 LR878113
 2020-03-07 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_43/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T1570C G11083T C14805T T17247C T21462C G26144T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_424342 MT528237
 2020-03-07 2020-04-12
 Italy SARS-CoV-2/human/ITA/INMI8/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G C23575T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_424842
 2020-03-07 2020-04-13
 United States hCoV-19/USA/SC_3575/2020
 T490A C3177T C8782T C16466T T18736C C24034T T26729C G28077C T28144C A29700G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424847
 2020-03-07 2020-04-13
 United States hCoV-19/USA/MA_4811/2020
 C241T C2416T C3037T C14408T A23403G G25563T G26233T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424850
 2020-03-07 2020-04-13
 United States hCoV-19/USA/IL_0087/2020
 C241T C3037T C10507T C14408T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424851
 2020-03-07 2020-04-13
 United States hCoV-19/USA/IL_0089/2020
 C8782T G16396T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424873
 2020-03-07 2020-04-13
 United States hCoV-19/USA/NC_0031/2020
 C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424875
 2020-03-07 2020-04-13
 United States hCoV-19/USA/NE_7025/2020
 G1440A G2891A C12651T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424883
 2020-03-07 2020-04-13
 United States hCoV-19/USA/PA_2317/2020
 C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424890
 2020-03-07 2020-04-13
 United States hCoV-19/USA/UT_8906/2020
 C241T C379A C1059T C3037T C14408T GG18505RK A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424899
 2020-03-07 2020-04-13
 United States hCoV-19/USA/IA_6391/2020
 C241T C3037T C14408T G22335T A23403G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424900
 2020-03-07 2020-04-13
 United States hCoV-19/USA/IA_6390/2020
 C241T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424903
 2020-03-07 2020-04-13
 United States hCoV-19/USA/SC_3570/2020
 T490A C3177T C8782T T18736C C24034T T26729C G28077C T28144C A29700G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424904
 2020-03-07 2020-04-13
 United States hCoV-19/USA/SC_3571/2020
 T490A C3177T C8782T T11635C T18736C C24034T T26729C G28077C T28144C A29700G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424919
 2020-03-07 2020-04-13
 United States hCoV-19/USA/MA_3642/2020
 C241T C2416T C3037T C14408T A23403G G25563T G26233T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_425798
 2020-03-07 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR67/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G14829K A23403G C25350T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_425804
 2020-03-07 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR74/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13694T C14408T A23403G C28310T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_426417 MT344945
 2020-03-07 2020-04-15
 United States SARS-CoV-2/human/USA/GA_2070/2020
 T490A C3177T C8782T T18736C C24034T T26729C G28077C T28144C A29700G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426421 MT344949
 2020-03-07 2020-04-15
 United States SARS-CoV-2/human/USA/HI_7881/2020
 C8717Y C8782T C14724T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426422 MT344950
 2020-03-07 2020-04-15
 United States SARS-CoV-2/human/USA/IN_72003/2020
 C241T C2416T C3037T C14408T A23403G C25169T G25563T CGAGGCCACGCGGAGTACGAT29733- AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426427 MT344962
 2020-03-07 2020-04-15
 United States SARS-CoV-2/human/USA/MN_0101/2020
 T514C ATG1605- C17410T AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_426429 MT344961
 2020-03-07 2020-04-15
 United States SARS-CoV-2/human/USA/NV_0016/2020
 ATG1605- C20270T A29683T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426431 MT344956
 2020-03-07 2020-04-15
 United States SARS-CoV-2/human/USA/OH_0020/2020
 C241T GTTATG515- C3037T C14408T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426432 MT344957
 2020-03-07 2020-04-15
 United States SARS-CoV-2/human/USA/PA_2734/2020
 C241T GTTATG515- C3037T C14408T C18877T A23403G C25516T G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426433 MT344958
 2020-03-07 2020-04-15
 United States SARS-CoV-2/human/USA/PA_2735/2020
 C241T GTTATG515- C3037T C14408T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_427370
 2020-03-07 2020-04-18
 Belgium hCoV-19/Belgium/ULG-10122/2020
 C241T C3037T C5974T C8394T C12469T C14408T C15277T C15324T A23403G

EPI_ISL_428676
 2020-03-07 2020-04-21
 Spain hCoV-19/Spain/Madrid_LP19_4952/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C3037T C8782T A20268G A23403G C26088T T28144C TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_429339
 2020-03-07 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI107/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429340
 2020-03-07 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI108/2020
 C241T C3037T A8072G C14408T A23403G

EPI_ISL_430064
 2020-03-07 2020-04-25
 Australia hCoV-19/Australia/VIC-CBA4/2020
 C8782T C17747T A17858G C18060T A24694T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_430291 MT632593
 2020-03-07 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S253/2020
 C8782T C17747T A17858G C18060T C20235T T28144C

EPI_ISL_434687
 2020-03-07 2020-05-01
 United States hCoV-19/USA/DC-HP00006/2020
 C241T C2416T C3037T A3094G C14408T A23403G G25563T

EPI_ISL_435303
 2020-03-07 2020-05-04
 Vietnam hCoV-19/Vietnam/VNHN_022/2020
 ATTAA1- C241T C3037T C14408T A23403G GGG28881AAC AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_435305
 2020-03-07 2020-05-04
 Vietnam hCoV-19/Vietnam/VNHN_026/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23403G GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_435612
 2020-03-07 2020-05-05
 United States hCoV-19/USA/CA-SCCPHD-UC133/2020
 C26601T

EPI_ISL_435615
 2020-03-07 2020-05-05
 United States hCoV-19/USA/CA-SCCPHD-UC136/2020
 C26032T G29711T

EPI_ISL_437210
 2020-03-07 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0009/2020
 C241T C3037T C14408T A23403G C27046T G27762T GGG28881AAC

EPI_ISL_437895 MT459899
 2020-03-07 2020-05-11
 Greece SARS-CoV-2/human/GRC/236_31815/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C2508T G9190T G11083T C12213T C14805T G15919T T17247C G26144T G26172A ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_438013
 2020-03-07 2020-05-12
 Austria hCoV-19/Austria/CeMM0168/2020
 C241T C3037T G12832A C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_438014
 2020-03-07 2020-05-12
 Austria hCoV-19/Austria/CeMM0169/2020
 C241T C3037T G12832A C14408T A23403G GGG28881AAC

EPI_ISL_438015
 2020-03-07 2020-05-12
 Austria hCoV-19/Austria/CeMM0170/2020
 C241T C3037T G12832A C14408T T22521K A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_438016
 2020-03-07 2020-05-12
 Austria hCoV-19/Austria/CeMM0171/2020
 C241T C3037T T4747Y G12832A C14408T A23403G GGG28881AAC AAAAAAAAA29895-

EPI_ISL_438017
 2020-03-07 2020-05-12
 Austria hCoV-19/Austria/CeMM0172/2020
 C241T C3037T G12832A C14408T T22521K A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_447842 MT472626
 2020-03-07 2020-05-14
 United States SARS-CoV-2/human/USA/IA-CDC-8200/2020
 C241T C3037T C14408T G22335T A23403G G28931A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_450116
 2020-03-07 2020-05-20
 United States hCoV-19/USA/NY-PV09439/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T C1059T C3037T C14408T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_452100
 2020-03-07 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-99/2020
 C241T C3037T A8072G C14408T A23403G GGG28881AAC

EPI_ISL_452125 MT512425
 2020-03-07 2020-05-26
 United States SARS-CoV-2/human/USA/GA-CDC-2059/2020
 T490A C3177T C6720T C8782Y T18736C C24034T T26729C G28077S T28144C A29700G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_452127 MT512427
 2020-03-07 2020-05-26
 United States SARS-CoV-2/human/USA/CO-CDC-5610/2020
 C8782Y A12787G C17747T A17858G C18060T A24694T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_452130 MT512430
 2020-03-07 2020-05-26
 United States SARS-CoV-2/human/USA/CO-CDC-5607/2020
 C9803T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_452345
 2020-03-07 2020-05-27
 China hCoV-19/Beijing/DT-travelES03/2020
 C241T C3037T C14408T A20268G C20897T T20901C A23403G

EPI_ISL_452354
 2020-03-07 2020-05-27
 China hCoV-19/Beijing/DT-travelIT03/2020
 C241T C3037T T8022G C14408T C18568T T20891G A23403G

EPI_ISL_452452
 2020-03-07 2020-05-27
 Spain hCoV-19/Spain/COV001922/2020
 C8782T T9477A C11674Y C14805T G25979T T28144C C28657T C28863T T29148Y G29402T

EPI_ISL_452742
 2020-03-07 2020-05-27
 Spain hCoV-19/Spain/COV000738/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T

EPI_ISL_452744
 2020-03-07 2020-05-27
 Spain hCoV-19/Spain/COV000736/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T C29870A

EPI_ISL_452747
 2020-03-07 2020-05-27
 Spain hCoV-19/Spain/COV000728/2020
 C8782T T9477A C14805T G19086K A23586G G25979T T28144C C28657T C28863T C29870A

EPI_ISL_452748
 2020-03-07 2020-05-27
 Spain hCoV-19/Spain/COV000727/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T

EPI_ISL_452749
 2020-03-07 2020-05-27
 Spain hCoV-19/Spain/COV000721/2020
 G343K C8782T T9477A C14805T G25979T T28144C C28657T C28863T

EPI_ISL_452755
 2020-03-07 2020-05-27
 Spain hCoV-19/Spain/COV000712/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T

EPI_ISL_454436
 2020-03-07 2020-05-28
 Sweden hCoV-19/Sweden/20-08040/2020
 C241T C3037T C14408T A23403G A26530G

EPI_ISL_454472
 2020-03-07 2020-05-28
 Sweden hCoV-19/Sweden/20-08101/2020
 C241T C3037T A12358T C14408T A23403G GGG28881AAC

EPI_ISL_454473
 2020-03-07 2020-05-28
 Sweden hCoV-19/Sweden/20-08102/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_454474
 2020-03-07 2020-05-28
 Sweden hCoV-19/Sweden/20-08103/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_454494
 2020-03-07 2020-05-28
 Sweden hCoV-19/Sweden/20-08045/2020
 C241T C3037T C14408T A23403G G29140T

EPI_ISL_454890
 2020-03-07 2020-05-29
 Sweden hCoV-19/Sweden/20-50220/2020
 C241T C3037T C11866T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_454891
 2020-03-07 2020-05-29
 Sweden hCoV-19/Sweden/20-50222/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_454892
 2020-03-07 2020-05-29
 Sweden hCoV-19/Sweden/20-50224/2020
 C241T C3037T C5730T C14408T A23403G GGG28881AAC A28995T

EPI_ISL_454893
 2020-03-07 2020-05-29
 Sweden hCoV-19/Sweden/20-50227/2020
 C241T C3037T C5730T C14408T A23403G GGG28881AAC

EPI_ISL_454896
 2020-03-07 2020-05-29
 Sweden hCoV-19/Sweden/20-50260/2020
 C241T C3037T C14408T C23393T A23403G

EPI_ISL_454903
 2020-03-07 2020-05-29
 Sweden hCoV-19/Sweden/20-50268/2020
 C241T C3037T C5730T C14408T A23403G GGG28881AAC

EPI_ISL_455874
 2020-03-07 2020-06-01
 Sweden hCoV-19/Sweden/20-50217/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_455877
 2020-03-07 2020-06-01
 Sweden hCoV-19/Sweden/20-50221/2020
 C241T C3037T C14408T G22583A A23403G

EPI_ISL_455879
 2020-03-07 2020-06-01
 Sweden hCoV-19/Sweden/20-50229/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_455880
 2020-03-07 2020-06-01
 Sweden hCoV-19/Sweden/20-50238/2020
 C241T A2292G C3037T C3373A C5654T C14408T A23403G C24034T GGG28881AAC

EPI_ISL_455881
 2020-03-07 2020-06-01
 Sweden hCoV-19/Sweden/20-50240/2020
 C241T C3037T C14408T C23393T A23403G G29639A

EPI_ISL_455882
 2020-03-07 2020-06-01
 Sweden hCoV-19/Sweden/20-50241/2020
 C241T G509A C3037T C14408T G17658T G22583A A23403G

EPI_ISL_455883
 2020-03-07 2020-06-01
 Sweden hCoV-19/Sweden/20-50242/2020
 C241T C3037T C3373A C5654T C14408T G19962T A23403G C24034T GGG28881AAC

EPI_ISL_455885
 2020-03-07 2020-06-01
 Sweden hCoV-19/Sweden/20-50245/2020
 C241T C3037T C3373A C5654T C14408T A23403G C24034T GGG28881AAC

EPI_ISL_455886
 2020-03-07 2020-06-01
 Sweden hCoV-19/Sweden/20-50246/2020
 C241T A2292G C3037T C3373A C5654T C14408T A23403G C24034T GGG28881AAC

EPI_ISL_455889
 2020-03-07 2020-06-01
 Sweden hCoV-19/Sweden/20-50250/2020
 C241T C2416T C3037T C14408T A23403G G25563T G26233T

EPI_ISL_455890
 2020-03-07 2020-06-01
 Sweden hCoV-19/Sweden/20-50251/2020
 C241T C3037T C14408T C22277A A23403G C27046T GGG28881AAC

EPI_ISL_455892
 2020-03-07 2020-06-01
 Sweden hCoV-19/Sweden/20-50254/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_455893
 2020-03-07 2020-06-01
 Sweden hCoV-19/Sweden/20-50255/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_455894
 2020-03-07 2020-06-01
 Sweden hCoV-19/Sweden/20-50256/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_455897
 2020-03-07 2020-06-01
 Sweden hCoV-19/Sweden/20-50259/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_457796 MT646069
 2020-03-07 2020-06-02
 United States SARS-CoV-2/human/USA/DC-HP00052/2020
 C241T C3037T C14408T A23403G T27299C GGG28881AAC T29148C

EPI_ISL_457797 MT646117
 2020-03-07 2020-06-02
 United States SARS-CoV-2/human/USA/DC-HP00054/2020
 C241T C1059T C3037T G12191K C14408T A23403G G25563T

EPI_ISL_460103 MT520178
 2020-03-07 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00426/2020
 ATTAAAG1- C241T C2416T C3037T C14408T A23403G G25563T G26849T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_460117 MT520192
 2020-03-07 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00417/2020
 ATTAAAGGTTTATA1- C241T C2416T C3037T C14408T A23403G G25563T C26681T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_460212 MT520287
 2020-03-07 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00427/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C2416T C3037T C14408T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460235 MT520310
 2020-03-07 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00431/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C2416T C3037T C14408T A23403G G25563T G26233T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_460239 MT520314
 2020-03-07 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00437/2020
 ATTAAA1- C241T C2416T C3037T G12361T C14408T A17399C A23403G G25563T G26233T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_460241 MT520316
 2020-03-07 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00415/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_460245 MT520320
 2020-03-07 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00420/2020
 ATTAAA1- C241T C2416T C3037T C14408T A23403G G25563T G26233T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_460266 MT520341
 2020-03-07 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00421/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C2416T C3037T C14408T A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_460300 MT520375
 2020-03-07 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00419/2020
 ATTAAA1- C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_460313 MT520388
 2020-03-07 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00425/2020
 ATTAAAGGTTTATAC1- C241T C2416T C3037T C14408T A23403G G25563T G26233T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_460321 MT520396
 2020-03-07 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00443/2020
 ATTAAA1- C241T C2416T C3037T G12361T C14408T A17399C C18929T A23403G G25563T G26233T AAAAAAAAAAAAAAAAAAAA29884-

EPI_ISL_460353 MT520428
 2020-03-07 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00416/2020
 ATTAAAG1- C241T C2416T C3037T C10015T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_460366 MT520441
 2020-03-07 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00430/2020
 ATTAAA1- C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_460371 MT520446
 2020-03-07 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00418/2020
 ATTAAAGGTTTA1- C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_460384 MT520459
 2020-03-07 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00422/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_460397 MT520472
 2020-03-07 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00424/2020
 ATTAAAGGTTTATACCTT1- C241T C2416T C3037T G5461T C14408T A23403G G25563T G26233T GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_460434 MT520509
 2020-03-07 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00439/2020
 ATTAAAGGTTT1- C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_460442 MT520517
 2020-03-07 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00432/2020
 ATTAAAGGTTTATAC1- C241T C2416T C3037T C14408T A23403G G25563T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_469078
 2020-03-07 2020-06-17
 Sweden hCoV-19/Sweden/20-50261/2020
 C241T C3037T G11761T C14408T A23403G C27046T GGG28881AAC -29708GAGCTGC

EPI_ISL_475549
 2020-03-07 2020-06-23
 Sweden hCoV-19/Sweden/20-08046/2020
 G1397A A7970G G14653A C18788T T28688C G29742T

EPI_ISL_475872
 2020-03-07 2020-06-25
 Austria hCoV-19/Austria/CeMM0461/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T19839C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475878
 2020-03-07 2020-06-25
 Austria hCoV-19/Austria/CeMM0473/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T19839C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479817
 2020-03-07 2020-07-01
 Japan hCoV-19/Japan/PG-0054/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C11752T C12068T C19170A TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_479818
 2020-03-07 2020-07-01
 Japan hCoV-19/Japan/PG-0055/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C11752T C12068T C19170A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479839
 2020-03-07 2020-07-01
 Japan hCoV-19/Japan/PG-0095/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C11752T C12068T C19170A CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_479840
 2020-03-07 2020-07-01
 Japan hCoV-19/Japan/PG-0097/2020
 ATTAAAGGTTTATACC1- C11752T C19170A AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_479903
 2020-03-07 2020-07-01
 Japan hCoV-19/Japan/PG-0200/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C8782T G16381A T17877C T28144C G28878A G29742A ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_482577
 2020-03-07 2020-07-04
 China hCoV-19/Hangzhou/HZCDC6228/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G C23575T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_483547
 2020-03-07 2020-07-07
 Bahrain hCoV-19/Bahrein/BAH-06/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C835T C884T G1397A G8653T G11083T G23426A T28688C G29742T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_488277
 2020-03-07 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F7AB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G T24814C C27046T C28814G GGG28881AAC C29784T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488355
 2020-03-07 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F69F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11321A C14408T A23403G C25350T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491437
 2020-03-07 2020-07-17
 Costa Rica hCoV-19/Costa Rica/INC-0025/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATC1- C241T C1059T C3037T C14408T A23403G G25563T CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

EPI_ISL_500109
 2020-03-07 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A5155/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C2558T G11083T C14805T G26144T

EPI_ISL_500400
 2020-03-07 2020-07-28
 Spain hCoV-19/Spain/COV005966/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C8782T C8980T T9477A C14805T G25979T T28144C C28657T C28863T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_500401
 2020-03-07 2020-07-28
 Spain hCoV-19/Spain/COV005967/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C8782T C8980T T9477A C14805T G25979T T28144C C28657T C28863T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_506954
 2020-03-07 2020-08-02
 South Korea hCoV-19/Korea/KCDC2160/2020
 ATT1- C241T G1820A G5572T G11083T C14805T C21575T G22592T G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_510265
 2020-03-07 2020-08-06
 Spain hCoV-19/Spain/COV003176/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C1059T C3037T C10078T C14408T C16726T A23403G G25563T

EPI_ISL_516626
 2020-03-07 2020-08-21
 Peru hCoV-19/Peru/INS-087/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAA1- C241T C813T G1212T C3037T C14408T A23403G G25429T ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_516629
 2020-03-07 2020-08-21
 Germany hCoV-19/Berlin/ChVir-D712-1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T C3037T C14408T A23403G GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_516630
 2020-03-07 2020-08-21
 Germany hCoV-19/Berlin/ChVir-D666-2/2020
 ATTAAAGGTTTAT1- C241T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_516631
 2020-03-07 2020-08-21
 Germany hCoV-19/Berlin/ChVir-D718-3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T C14408T A23403G AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_516632
 2020-03-07 2020-08-21
 Germany hCoV-19/Berlin/ChVir-D672-4/2020
 ATTAAAGGTTTA1- C241T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_516635
 2020-03-07 2020-08-21
 Germany hCoV-19/Berlin/ChVir-D667-7/2020
 ATTAAAGGTTT1- C241T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_516636
 2020-03-07 2020-08-21
 Germany hCoV-19/Berlin/ChVir-D671-8/2020
 ATTAAAGGTTTATAC1- C241T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_516638
 2020-03-07 2020-08-21
 Germany hCoV-19/Berlin/ChVir-D710-10/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C3037T C14408T G20469R A23403G AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_516640
 2020-03-07 2020-08-21
 Germany hCoV-19/Berlin/ChVir-D717-D761-12/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C3037T C14408T A14801R A23403G AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_523927
 2020-03-07 2020-08-27
 Germany hCoV-19/Germany/NW-56/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_523949
 2020-03-07 2020-08-27
 Germany hCoV-19/Germany/NW-78/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525581
 2020-03-07 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-11509-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T TA27267- TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_525582
 2020-03-07 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-11513-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_525583
 2020-03-07 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-11537-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_525584
 2020-03-07 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-11538-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_529033
 2020-03-07 2020-09-09
 United States hCoV-19/USA/NY-Wadsworth-11460-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- A2480G C2558T G11083T C14805T C17010A C21575T G26144T C26985A TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_530032
 2020-03-07 2020-09-10
 Spain hCoV-19/Spain/MD-LP104-2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5274T C14408T A18001C A20268G C21304T A23403G G29734C ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_537412
 2020-03-07 2020-09-16
 Spain hCoV-19/Spain/RI-CSIC-99005869/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C8782T T9477A C14805T G25979T A28024W T28144C C28657T C28863T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_539506
 2020-03-07 2020-09-18
 Spain hCoV-19/Spain/AR-ISCIII-201665/2020
 T8392C A8897G G11083T G26144T

EPI_ISL_539507
 2020-03-07 2020-09-18
 Spain hCoV-19/Spain/AR-ISCIII-201672/2020
 G11083T T12826A

EPI_ISL_539508
 2020-03-07 2020-09-18
 Spain hCoV-19/Spain/AR-ISCIII-201673/2020
 G11083T G26144T

EPI_ISL_539511
 2020-03-07 2020-09-18
 Spain hCoV-19/Spain/AR-ISCIII-201692/2020
 G11083T G26144T

EPI_ISL_539512
 2020-03-07 2020-09-18
 Spain hCoV-19/Spain/AR-ISCIII-201693/2020
 C4543T G11071C G11083T G26144T

EPI_ISL_539513
 2020-03-07 2020-09-18
 Spain hCoV-19/Spain/AR-ISCIII-201779/2020
 C106T C4543T T8057C G11071C C11074T G11083T G26144T

EPI_ISL_539514
 2020-03-07 2020-09-18
 Spain hCoV-19/Spain/AR-ISCIII-201780/2020
 G11071C G11083T G26144T

EPI_ISL_539559
 2020-03-07 2020-09-18
 Spain hCoV-19/Spain/EX-ISCIII-201654/2020
 A15657G T28144C C29485A C29603A

EPI_ISL_539560
 2020-03-07 2020-09-18
 Spain hCoV-19/Spain/EX-ISCIII-201655/2020
 G11083T G26144T

EPI_ISL_566048
 2020-03-07 2020-10-01
 United Kingdom hCoV-19/England/201090129/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T A11755G C14408T A23403G C27046T GGG28881AAC AAAAAAAAAAAAAAA29889-

EPI_ISL_569244
 2020-03-07 2020-10-02
 France hCoV-19/France/IHU-0014/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C14408T C15324T A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

MT325577
 2020-03-07 2020-04-10
 United States SARS-CoV-2/human/USA/IL_0087/2020
 C241T C3037T C10507T C14408T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MT325578
 2020-03-07 2020-04-10
 United States SARS-CoV-2/human/USA/IL_0089/2020
 C8782T G16396T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

MT325586
 2020-03-07 2020-04-10
 United States SARS-CoV-2/human/USA/MA_4811/2020
 C241T C2416T C3037T C14408T A23403G G25563T G26233T AAAAAAAAAAAAAAAAAAAAA29883-

MT325590
 2020-03-07 2020-04-10
 United States SARS-CoV-2/human/USA/NC_0031/2020
 C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MT325593
 2020-03-07 2020-04-10
 United States SARS-CoV-2/human/USA/NE_7025/2020
 G1440A G2891A C12651T AAAAAAAAAAAAAAAAAAAAA29883-

MT325601
 2020-03-07 2020-04-10
 United States SARS-CoV-2/human/USA/PA_2317/2020
 C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MT325607
 2020-03-07 2020-04-10
 United States SARS-CoV-2/human/USA/SC_3575/2020
 T490A C3177T C8782T C16466T T18736C C24034T T26729C G28077C T28144C A29700G AAAAAAAAAAAAAAAAAAAAA29883-

MT325610
 2020-03-07 2020-04-10
 United States SARS-CoV-2/human/USA/UT_8906/2020
 C241T C379A C1059T C3037T C14408T GG18505RK A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MT325615
 2020-03-07 2020-04-10
 United States SARS-CoV-2/human/USA/IA_6391/2020
 C241T C3037T C14408T G22335T A23403G AAAAAAAAAAAAAAAAAAAAA29883-

MT325621
 2020-03-07 2020-04-10
 United States SARS-CoV-2/human/USA/IA_6390/2020
 C241T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAA29883-

MT325624
 2020-03-07 2020-04-10
 United States SARS-CoV-2/human/USA/SC_3570/2020
 T490A C3177T C8782T T18736C C24034T T26729C G28077C T28144C A29700G AAAAAAAAAAAAAAAAAAAAA29883-

MT325625
 2020-03-07 2020-04-10
 United States SARS-CoV-2/human/USA/SC_3571/2020
 T490A C3177T C8782T T11635C T18736C C24034T T26729C G28077C T28144C A29700G AAAAAAAAAAAAAAAAAAAAA29883-

MT325639
 2020-03-07 2020-04-10
 United States SARS-CoV-2/human/USA/MA_3642/2020
 C241T C2416T C3037T C14408T A23403G G25563T G26233T AAAAAAAAAAAAAAAAAAAAA29883-

MT459898
 2020-03-07 2020-05-11
 Greece SARS-CoV-2/human/GRC/235_31783/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

MT509463
 2020-03-07 2020-05-22
 United States SARS-CoV-2/human/USA/DC-HP00006/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T A3094G C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_414536 LR878319
 2020-03-08 2020-03-13
 Netherlands hCoV-19/Netherlands/NoordBrabant_27/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- C6255T C17410T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_414537 LR878326
 2020-03-08 2020-03-13
 Netherlands hCoV-19/Netherlands/NoordBrabant_28/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- C6255T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_414539 LR878336
 2020-03-08 2020-03-13
 Netherlands hCoV-19/Netherlands/NoordBrabant_30/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- C6255T G25252T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_414554 LR878314
 2020-03-08 2020-03-13
 Netherlands hCoV-19/Netherlands/Utrecht_15/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C22277A A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_414555 LR878309
 2020-03-08 2020-03-13
 Netherlands hCoV-19/Netherlands/Utrecht_16/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6255T C8782T G16381A T28144C G28878A G29742A GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_414557 LR878289
 2020-03-08 2020-03-13
 Netherlands hCoV-19/Netherlands/ZuidHolland_15/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3145T C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_414564 LR878308
 2020-03-08 2020-03-13
 Netherlands hCoV-19/Netherlands/ZuidHolland_22/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_414616
 2020-03-08 2020-03-15
 United States hCoV-19/USA/WA-UW29/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATC1- C241T C1059T C3037T C14408T A23403G G25563T G29553A

EPI_ISL_414617
 2020-03-08 2020-03-15
 United States hCoV-19/USA/WA-UW30/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- T150C T153G C8782T C17747T A17858G C18060T A26530G T28144C G29422A A29903-

EPI_ISL_414618
 2020-03-08 2020-03-15
 United States hCoV-19/USA/WA-UW31/2020
 TA3BD C8782T C10369T C17747T A17858G C18060T T23010C T28144C

EPI_ISL_414620
 2020-03-08 2020-03-15
 United States hCoV-19/USA/WA-UW33/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAA1- C8782T C17747T A17858G C18060T T28144C A29903-

EPI_ISL_414642
 2020-03-08 2020-03-15
 Finland hCoV-19/Finland/FIN-455/2020
 C241T C1059T C3037T C14408T A23403G G25563T GTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29810-

EPI_ISL_415478 LR878087
 2020-03-08 2020-03-17
 Netherlands hCoV-19/Netherlands/NA_21/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- G210T A2480G C2558T G11083T C14805T G26144T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415479 LR878074
 2020-03-08 2020-03-17
 Netherlands hCoV-19/Netherlands/NA_22/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- T514C ATG1605- G9314T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415481 LR878084
 2020-03-08 2020-03-17
 Netherlands hCoV-19/Netherlands/NA_24/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C1059T C3037T C6255T C14408T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415606 MT252802
 2020-03-08 2020-03-18
 United States SARS-CoV-2/human/USA/WA-UW41/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTG1- G261B C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAA29892-

EPI_ISL_415608 MT252804
 2020-03-08 2020-03-18
 United States SARS-CoV-2/human/USA/WA-UW43/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C6310T C8782T C17747T A17858G C18060T G27327T T28144C -29904AANANANADA

EPI_ISL_415609 MT252805
 2020-03-08 2020-03-18
 United States SARS-CoV-2/human/USA/WA-UW44/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- AACC34TTTA C6310T C8782T C17747T A17858G C18060T G27327T T28144C GA29868CT -29904ANANNAAT

EPI_ISL_415615 MT252810
 2020-03-08 2020-03-18
 United States SARS-CoV-2/human/USA/WA-UW50/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- T2153A A3889G C8782T C17747T A17858G C18060T C27167T T28144C

EPI_ISL_415616 MT252811
 2020-03-08 2020-03-18
 United States SARS-CoV-2/human/USA/WA-UW51/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATC1- C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAA29891-

EPI_ISL_415640
 2020-03-08 2020-03-18
 United Kingdom hCoV-19/Scotland/EDB003/2020
 C241T C3037T C14408T A23403G C23575T G23587C

EPI_ISL_415661
 2020-03-08 2020-03-19
 Chile hCoV-19/Chile/Santiago_op4d1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_415707
 2020-03-08 2020-03-19
 Switzerland hCoV-19/Switzerland/GE6679/2020
 ATTAAA1- C241T C3037T C14408T C15324T A23403G

EPI_ISL_416477
 2020-03-08 2020-03-22
 Georgia hCoV-19/Georgia/Tb-390/2020
 ATT1- C8782T T9477A C14805T G15359A G25979T T28144C C28657T C28863T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_416493
 2020-03-08 2020-03-22
 France hCoV-19/France/HF2196/2020
 C241T C3037T C14408T C15324T A23403G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_416758
 2020-03-08 2020-03-23
 France hCoV-19/France/Lyon_0693/2020
 C241T C337T C3037T T9208C C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_417017
 2020-03-08 2020-03-23
 Belgium hCoV-19/Belgium/ULG-6638/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G C9223T C9438T G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417165 MT605815
 2020-03-08 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S112/2020
 C8782T C17747T A17858G C18060T C18894T T28144C

EPI_ISL_417265
 2020-03-08 2020-03-25
 United Kingdom hCoV-19/England/20109050406/2020
 C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC

EPI_ISL_417291
 2020-03-08 2020-03-25
 United Kingdom hCoV-19/England/20109094206/2020
 G11083T C14267T C14805T T17247C C24023T G26144T

EPI_ISL_417293
 2020-03-08 2020-03-25
 United Kingdom hCoV-19/England/20109097506/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_417295
 2020-03-08 2020-03-25
 United Kingdom hCoV-19/England/20109098806/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_417299
 2020-03-08 2020-03-25
 United Kingdom hCoV-19/England/20109099206/2020
 C241T C3037T C3373A C14408T C14688T A23403G GGG28881AAC

EPI_ISL_417312
 2020-03-08 2020-03-25
 United Kingdom hCoV-19/England/20110059306/2020
 ATG1605- C1912T A19953M

EPI_ISL_417313
 2020-03-08 2020-03-25
 United Kingdom hCoV-19/England/20110097506/2020
 ATG1605- C14621T

EPI_ISL_417339
 2020-03-08 2020-03-25
 France hCoV-19/France/Lyon_06820/2020
 C241T C3037T A11935C C14408T C15324T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_417390
 2020-03-08 2020-03-25
 Australia hCoV-19/Australia/NSW27/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3732T C14408T T19839C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417391
 2020-03-08 2020-03-25
 Australia hCoV-19/Australia/NSW28/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1397A C2113T T9743C G11083T G14122T C18928T T28688C G29374A G29742T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417393
 2020-03-08 2020-03-25
 Australia hCoV-19/Australia/NSW35/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- G1397A C2113T T9574C G11071C C11074T G11083T C18928T T28688C G29374A CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_417728
 2020-03-08 2020-03-27
 Iceland hCoV-19/Iceland/70/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC T29104C

EPI_ISL_417749
 2020-03-08 2020-03-27
 Iceland hCoV-19/Iceland/69/2020
 C241T C3037T C14408T A23403G G24077T

EPI_ISL_417880
 2020-03-08 2020-03-27
 Slovakia hCoV-19/Slovakia/SK-BMC6/2020
 T514C ATG1605- C17410T TG29867WR

EPI_ISL_417991
 2020-03-08 2020-03-28
 Portugal hCoV-19/Portugal/PT0006b/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G C28310T C29144T T29446C TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_417993
 2020-03-08 2020-03-28
 Portugal hCoV-19/Portugal/PT0008/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_417994
 2020-03-08 2020-03-28
 Portugal hCoV-19/Portugal/PT0009/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G C25791T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_417995
 2020-03-08 2020-03-28
 Portugal hCoV-19/Portugal/PT0010/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3373A C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_417996
 2020-03-08 2020-03-28
 Portugal hCoV-19/Portugal/PT0011/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G C29144T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_417998
 2020-03-08 2020-03-28
 Portugal hCoV-19/Portugal/PT0013/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_418224
 2020-03-08 2020-03-29
 France hCoV-19/France/HF2150/2020
 C241T C1059T C3037T C14408T A23403G G25563T A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_418225
 2020-03-08 2020-03-29
 France hCoV-19/France/HF2155/2020
 C241T C2416T C3037T C6666T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_418242
 2020-03-08 2020-03-29
 Algeria hCoV-19/Algeria/G0640_2265/2020
 C241T C1059T C3037T C10582T C14408T A23403G G25563T C29353T GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_418322
 2020-03-08 2020-03-08
 Canada hCoV-19/Canada/ON_PHL3917/2020
 A1- G1397A G11083T T22032C T28688C G29742T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418331
 2020-03-08 2020-03-08
 Canada hCoV-19/Canada/ON_PHL6883/2020
 A1- A2500G C8782T C17747T A17858G C18060T A24694T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418348
 2020-03-08 2020-03-08
 Canada hCoV-19/Canada/ON_PHL3680/2020
 A1- C241T C1059T C3037T C14408T A23403G G25563T G28368A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418355
 2020-03-08 2020-03-08
 Canada hCoV-19/Canada/ON_PHLU8150/2020
 A1- C241T C3037T C14408T A23403G G29254T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418580
 2020-03-08 2020-03-30
 Ireland hCoV-19/Ireland/Dublin-22361/2020
 C241T C3037T A3558G C14408T A15914G A23403G GGG28881AAC

EPI_ISL_418581
 2020-03-08 2020-03-30
 Ireland hCoV-19/Ireland/Dublin-22428/2020
 C241T C3037T C6628T C14408T A23403G GGG28881AAC

EPI_ISL_419260 MT322401
 2020-03-08 2020-04-08
 United States SARS-CoV-2/human/USA/VA-DCLS-0008/2020
 ATT1- C241T C3037T C14408T C18877T A23403G G25563T

EPI_ISL_419296 LC547518
 2020-03-08 2020-04-02
 Japan hCoV-19/Japan/P1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_419578
 2020-03-08 2020-04-02
 Luxembourg hCoV-19/Luxembourg/LNS2614631/2020
 C241T C3037T G11083K C14408T C15324T C16551M A19397W A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_419741 MT450935
 2020-03-08 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC20/2020
 ATTAAAGGTTTATACCTTC1- C8782T C17747T A17858G C18060T A24694T T28144C

EPI_ISL_421173
 2020-03-08 2020-04-07
 Spain hCoV-19/Spain/Madrid_H12_1703/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11704T C14408T G15327T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_422805 LR878118
 2020-03-08 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_44/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- C17410T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422807 LR878119
 2020-03-08 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_46/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T1570C G11083T C14805T T17247C G26144T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422808 LR878132
 2020-03-08 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_47/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C13119T C14805T T17247C G26144T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422811 LR878145
 2020-03-08 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_50/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- C17410T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422818 LR878133
 2020-03-08 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_57/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T T17247C G26144T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422819 LR878149
 2020-03-08 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_58/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- T4427C C17410T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422864
 2020-03-08 2020-04-11
 Netherlands hCoV-19/Netherlands/NoordBrabant_105/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_424861
 2020-03-08 2020-04-13
 United States hCoV-19/USA/GA_2118/2020
 T490A C3177T C8782T G14118A T18736C C24034T T26729C G28077C T28144C A29700G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424865
 2020-03-08 2020-04-13
 United States hCoV-19/USA/IA_6394/2020
 C241T T3011C C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424872
 2020-03-08 2020-04-13
 United States hCoV-19/USA/NC_0024/2020
 C241T C2416T C3037T C14408T G14707K A23403G G25563T G26233T G28812K AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424880
 2020-03-08 2020-04-13
 United States hCoV-19/USA/OH_0023/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424884
 2020-03-08 2020-04-13
 United States hCoV-19/USA/PA_2937/2020
 C241T C2416T C3037T C14408T T15393Y A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424888
 2020-03-08 2020-04-13
 United States hCoV-19/USA/SC_6370/2020
 T490A C3177T C6525Y C8782T C8956T C17074Y T18736C C24034T T26729C G28077C T28144C A29700G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424891
 2020-03-08 2020-04-13
 United States hCoV-19/USA/VA_6352/2020
 C241T C3037T C14408T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424892
 2020-03-08 2020-04-13
 United States hCoV-19/USA/VA_6377/2020
 C241T C3037T C14408T GG18505RK C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424893
 2020-03-08 2020-04-13
 United States hCoV-19/USA/VA_6382/2020
 C8782T C17747T A17858G C18060T G18756K T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424894
 2020-03-08 2020-04-13
 United States hCoV-19/USA/VA_6389/2020
 C241T C3037T G11417T C14408T A23403G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424895
 2020-03-08 2020-04-13
 United States hCoV-19/USA/IA_6396/2020
 C241T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424896
 2020-03-08 2020-04-13
 United States hCoV-19/USA/IA_6395/2020
 C241T T3011C C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424897
 2020-03-08 2020-04-13
 United States hCoV-19/USA/IA_6401/2020
 C241T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424898
 2020-03-08 2020-04-13
 United States hCoV-19/USA/IA_6399/2020
 C241T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426050
 2020-03-08 2020-04-14
 United States hCoV-19/USA/NY-Wadsworth-11666-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426290
 2020-03-08 2020-04-15
 United States hCoV-19/USA/NY-Wadsworth-11735-01/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_426291
 2020-03-08 2020-04-15
 United States hCoV-19/USA/NY-Wadsworth-11717-01/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T C3037T C8770Y C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_426311
 2020-03-08 2020-04-15
 United States hCoV-19/USA/NY-Wadsworth-11736-02/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426416 MT344944
 2020-03-08 2020-04-15
 United States SARS-CoV-2/human/USA/CT_9849/2020
 C241Y C1059Y C8782T G13571K T16857Y C17747Y A17858G C18060T A23403R G24933K T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426423 MT344951
 2020-03-08 2020-04-15
 United States SARS-CoV-2/human/USA/IN_82003/2020
 C241T C2416T C3037T C14408T A23403G C25169T G25563T CGAGGCCACGCGGAGTACGAT29733- AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426428 MT344963
 2020-03-08 2020-04-15
 United States SARS-CoV-2/human/USA/NC_0025/2020
 G204K C241T C2416T C3037T G3638R C4543T G11042S C14408T A23403G T24412Y G25563T G26233T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426430 MT344955
 2020-03-08 2020-04-15
 United States SARS-CoV-2/human/USA/OH_0019/2020
 C241T GTTATG515- C3037T C14408T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426434 MT344959
 2020-03-08 2020-04-15
 United States SARS-CoV-2/human/USA/PA_2887/2020
 C241T C1059T C3037T C13994Y C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_428678
 2020-03-08 2020-04-21
 Spain hCoV-19/Spain/Madrid_LP22_5885/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C3037T C8782T A20268G A23403G C26088T T28144C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_428679
 2020-03-08 2020-04-21
 Spain hCoV-19/Spain/Madrid_LP23_5852/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T T17126C A20268G A23403G -29826T -29861T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_428823
 2020-03-08 2020-04-22
 Singapore hCoV-19/Singapore/44/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAG1- T9542Y G9950R C14029Y AAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29813-

EPI_ISL_428828
 2020-03-08 2020-04-22
 Singapore hCoV-19/Singapore/49/2020
 ATTA1- C241T C3037T C14408T A23403G AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_428829
 2020-03-08 2020-04-22
 Singapore hCoV-19/Singapore/50/2020
 A23359G AGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29799-

EPI_ISL_429145
 2020-03-08 2020-04-23
 Sweden hCoV-19/Sweden/20-50170/2020
 C241T C3037T A12790G C13568T C14408T A23403G

EPI_ISL_429146
 2020-03-08 2020-04-23
 Sweden hCoV-19/Sweden/20-50171/2020
 C241T G1306T C3037T G11535T A12790G C13568T C14408T A23403G

EPI_ISL_429147
 2020-03-08 2020-04-23
 Sweden hCoV-19/Sweden/20-50172/2020
 C241T C3037T A12790G C13568T C14408T A23403G

EPI_ISL_429148
 2020-03-08 2020-04-23
 Sweden hCoV-19/Sweden/20-50173/2020
 C241T C3037T A12790G C13568T C14408T A23403G

EPI_ISL_429150
 2020-03-08 2020-04-23
 Sweden hCoV-19/Sweden/20-50175/2020
 C241T C3037T A12790G C13568T C14408T A23403G

EPI_ISL_429151
 2020-03-08 2020-04-23
 Sweden hCoV-19/Sweden/20-50176/2020
 C241T C3037T A12790G C13568T C14408T A23403G

EPI_ISL_429152
 2020-03-08 2020-04-23
 Sweden hCoV-19/Sweden/20-50179/2020
 C241T C2416T C3037T C14408T G21746T A23403G G25563T

EPI_ISL_429153
 2020-03-08 2020-04-23
 Sweden hCoV-19/Sweden/20-50180/2020
 C241T C3037T A12790G C13568T C14408T A23403G

EPI_ISL_429154
 2020-03-08 2020-04-23
 Sweden hCoV-19/Sweden/20-50181/2020
 C241T C3037T A12790G C13568T C14408T A23403G

EPI_ISL_429337
 2020-03-08 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI105/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429342
 2020-03-08 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI110/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429344
 2020-03-08 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI113/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429348
 2020-03-08 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI119/2020
 C241T C1059T C3037T C5886T C14408T G20419T A23403G G25563T

EPI_ISL_429349
 2020-03-08 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI120/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429350
 2020-03-08 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI121/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429351
 2020-03-08 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI122/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429352
 2020-03-08 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI123/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429353
 2020-03-08 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI125/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_429354
 2020-03-08 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI126/2020
 C241T C1059T C3037T C14408T G15380T A23403G G25563T

EPI_ISL_429355
 2020-03-08 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI128/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429356
 2020-03-08 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI129/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429357
 2020-03-08 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI132/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429497
 2020-03-08 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI404/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429499
 2020-03-08 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI405/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_430128 MT627616
 2020-03-08 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S274/2020
 C241T C1059T C3037T C14408T A23403G G25563T G29553A

EPI_ISL_430270 MT632502
 2020-03-08 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S232/2020
 G2840A C8782T C17747T A17858G C18060T C23029T A26045G T28144C

EPI_ISL_430293 MT632575
 2020-03-08 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S255/2020
 G2840A C8782T C17747T A17858G C18060T A26045G T28144C

EPI_ISL_430862
 2020-03-08 2020-04-28
 Sweden hCoV-19/Sweden/20-50185/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_434127 MT632951
 2020-03-08 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S367/2020
 C8782T C17747T A17858G C18060T C18894T T28144C

EPI_ISL_436061 MT434794
 2020-03-08 2020-05-05
 United States SARS-CoV-2/human/USA/NY-CDC-SURV0319NYC/2020
 C241T C1059T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_436072 MT434816
 2020-03-08 2020-05-05
 United States SARS-CoV-2/human/USA/NY-CDC-SURV0592NYC/2020
 C241T ATG518- C1059T C6578T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_437244
 2020-03-08 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0045/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_437642
 2020-03-08 2020-05-11
 Denmark hCoV-19/Denmark/ALAB-SSI-133/2020
 C241T T658C C3037T C14408T A23403G A24862G C28629T

EPI_ISL_437647
 2020-03-08 2020-05-11
 Denmark hCoV-19/Denmark/ALAB-SSI-135/2020
 C241T C1059T C3037T C14408T G15380T A23403G G25563T

EPI_ISL_437648
 2020-03-08 2020-05-11
 Denmark hCoV-19/Denmark/ALAB-SSI-136/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_437649
 2020-03-08 2020-05-11
 Denmark hCoV-19/Denmark/ALAB-SSI-137/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_437650
 2020-03-08 2020-05-11
 Denmark hCoV-19/Denmark/ALAB-SSI-138/2020
 C241T C1059T C3037T A6133G C14408T G20419T A23403G G25563T C27707T

EPI_ISL_437896 MT459900
 2020-03-08 2020-05-11
 Greece SARS-CoV-2/human/GRC/237_31890/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T C18877T A23403G A24367G G25563T G25855T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_438018
 2020-03-08 2020-05-12
 Austria hCoV-19/Austria/CeMM0175/2020
 C241T G2809K C3037T G12832A C14408T T22521K A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_438019
 2020-03-08 2020-05-12
 Austria hCoV-19/Austria/CeMM0176/2020
 C241T C3037T G12832A C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAA29888-

EPI_ISL_438020
 2020-03-08 2020-05-12
 Austria hCoV-19/Austria/CeMM0177/2020
 C241T C3037T G12832A C14408T C20457T T22521K A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_438233
 2020-03-08 2020-05-12
 United States hCoV-19/USA/MD-HP00075/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_445247
 2020-03-08 2020-05-15
 Chile hCoV-19/Chile/Santiago_4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGA1- C8782T T9477A C14805T G25979T C27727A C28087Y T28144C A28416T C28657T C28863T GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_447840 MT472627
 2020-03-08 2020-05-14
 United States SARS-CoV-2/human/USA/DC-CDC-0019/2020
 C241T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_447844 MT472621
 2020-03-08 2020-05-14
 United States SARS-CoV-2/human/USA/PA-CDC-2908/2020
 C241T C3037T C14408T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_447845 MT472625
 2020-03-08 2020-05-14
 United States SARS-CoV-2/human/USA/PR-CDC-3578/2020
 C241T C3037T C5284Y T8647Y C11339Y T12629C C14408T C17649Y A23403G C25731Y C27161Y T29470A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_450119
 2020-03-08 2020-05-20
 United States hCoV-19/USA/NY-PV09442/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTT1- C241T C1059T C3037T G10523C C12119T C14408T C18086A A23403G G25563T TTAAAGTTTCCATTTGGAATCTTGATTACATCATA27266- AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450405 MT276600
 2020-03-08 2020-04-02
 China SARS-CoV-2/human/HKG/case113_VM2003179/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- G1595A C9962T C11704T T13929C C14724T T21584G G26144T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_451989
 2020-03-08 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-102/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_451990
 2020-03-08 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-104/2020
 C241T C3037T C14408T A23403G C23575T G23587C C24374T

EPI_ISL_452126 MT512426
 2020-03-08 2020-05-26
 United States SARS-CoV-2/human/USA/NC-CDC-0034/2020
 C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_452128 MT512428
 2020-03-08 2020-05-26
 United States SARS-CoV-2/human/USA/CO-CDC-5667/2020
 C8782Y G11583K A12787G C17747T A17858G C18060T A24694T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_452717
 2020-03-08 2020-05-27
 Spain hCoV-19/Spain/COV000805/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T C29870A

EPI_ISL_452738
 2020-03-08 2020-05-27
 Spain hCoV-19/Spain/COV000750/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T

EPI_ISL_454437
 2020-03-08 2020-05-28
 Sweden hCoV-19/Sweden/20-08042/2020
 C241T C3037T G11761T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_454438
 2020-03-08 2020-05-28
 Sweden hCoV-19/Sweden/20-08043/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_454478
 2020-03-08 2020-05-28
 Sweden hCoV-19/Sweden/20-08107/2020
 C241T C3037T C14408T G22583A A23403G

EPI_ISL_454485
 2020-03-08 2020-05-28
 Sweden hCoV-19/Sweden/20-08114/2020
 C241T C3037T C14408T C23086T A23403G C27046T GGG28881AAC

EPI_ISL_454495
 2020-03-08 2020-05-28
 Sweden hCoV-19/Sweden/20-08047/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC G29711T

EPI_ISL_454894
 2020-03-08 2020-05-29
 Sweden hCoV-19/Sweden/20-50248/2020
 C241T C3037T G12079A C14408T G15598T C16260T A23403G GGG28881AAC

EPI_ISL_454895
 2020-03-08 2020-05-29
 Sweden hCoV-19/Sweden/20-50252/2020
 C241T C3037T T9544C C14408T A23403G C26894T GGG28881AAC

EPI_ISL_455845
 2020-03-08 2020-06-01
 Sweden hCoV-19/Sweden/20-08179/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T

EPI_ISL_455878
 2020-03-08 2020-06-01
 Sweden hCoV-19/Sweden/20-50223/2020
 C241T C3037T C14408T A23403G

EPI_ISL_455884
 2020-03-08 2020-06-01
 Sweden hCoV-19/Sweden/20-50244/2020
 C241T C3037T C3373A C5654T C14408T A23403G C24034T GGG28881AAC

EPI_ISL_455887
 2020-03-08 2020-06-01
 Sweden hCoV-19/Sweden/20-50247/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_455888
 2020-03-08 2020-06-01
 Sweden hCoV-19/Sweden/20-50249/2020
 C241T C3037T C14408T A23403G C25782T GGG28881AAC

EPI_ISL_455891
 2020-03-08 2020-06-01
 Sweden hCoV-19/Sweden/20-50253/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_455895
 2020-03-08 2020-06-01
 Sweden hCoV-19/Sweden/20-50257/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_455896
 2020-03-08 2020-06-01
 Sweden hCoV-19/Sweden/20-50258/2020
 C241T C3037T C14408T G15598T A23403G GGG28881AAC

EPI_ISL_455904
 2020-03-08 2020-06-01
 Sweden hCoV-19/Sweden/20-50270/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_455906
 2020-03-08 2020-06-01
 Sweden hCoV-19/Sweden/20-50274/2020
 C241T C3037T C14408T A23403G C23575T G23587C

EPI_ISL_457826
 2020-03-08 2020-06-02
 Italy hCoV-19/Italy/AMC2-1245/2020
 ATTAAAGGTTTAT1- C241T C3037T C14408T A23403G A26530G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_460252 MT520327
 2020-03-08 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00435/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_460354 MT520429
 2020-03-08 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00444/2020
 ATTAAAGGTTTATACC1- C241T C2416T C3037T C14408T A23403G G25563T C27654T G29628T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_467950
 2020-03-08 2020-06-16
 United States hCoV-19/USA/CA-SR0415/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_467982
 2020-03-08 2020-06-16
 United States hCoV-19/USA/CA-SR0460/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_475548
 2020-03-08 2020-06-23
 Sweden hCoV-19/Sweden/20-08041/2020
 C14805T T17247C G26144T

EPI_ISL_475830
 2020-03-08 2020-06-25
 Austria hCoV-19/Austria/CeMM0390/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479791
 2020-03-08 2020-07-01
 Italy hCoV-19/Italy/FVG-ICGEB_S26/2020
 C241T C3037T C14408T G15708A A23403G T26463C

EPI_ISL_479819
 2020-03-08 2020-07-01
 Japan hCoV-19/Japan/PG-0056/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T G16381A T17877C T28144C G28878A G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479820
 2020-03-08 2020-07-01
 Japan hCoV-19/Japan/PG-0057/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C8782T G16381A T17877C T28144C G28878A G29742A AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_479822
 2020-03-08 2020-07-01
 Japan hCoV-19/Japan/PG-0060/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C8782T G16381A T17877C T28144C G28878A G29742A TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_479841
 2020-03-08 2020-07-01
 Japan hCoV-19/Japan/PG-0098/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- G11083T C11752T C19170A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479842
 2020-03-08 2020-07-01
 Japan hCoV-19/Japan/PG-0099/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C11752T C19170A G28857T TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_479918
 2020-03-08 2020-07-01
 Japan hCoV-19/Japan/PG-0218/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCT1- A2160G T4402C G5062T C8782T T28144C CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_479919
 2020-03-08 2020-07-01
 Japan hCoV-19/Japan/PG-0219/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- A2160G T4402C G5062T C8782T T28144C ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_485001
 2020-03-08 2020-07-09
 South Korea hCoV-19/South Korea/A2/2020
 ATTAAAGGTTTA1- C2232Y G5572T C9924T G11083T C14805T C24381T G26144T G27754T AAAAAAAAAAAAAAAAAAAAAA29882-

EPI_ISL_488228
 2020-03-08 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F6DB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- G19518T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488310
 2020-03-08 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F6EA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489987
 2020-03-08 2020-07-14
 Peru hCoV-19/Peru/INS-009/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAA1- C241T C3037T C14408T C15277T A21917G A23403G A26530G ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_492985
 2020-03-08 2020-07-20
 Italy hCoV-19/Italy/NegrarVR_6/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C3037T T3793C C14408T A16311G A23403G C23575T T29867A C29870A

EPI_ISL_495663 MT827203
 2020-03-08 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1488/2020
 ATTAAAGGTTT1- C8782T C9246T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_500399
 2020-03-08 2020-07-28
 Spain hCoV-19/Spain/COV005965/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C8782T C8980T T9477A C14805T G25979T T28144C C28657T C28863T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_506956
 2020-03-08 2020-08-02
 South Korea hCoV-19/Korea/KCDC2162/2020
 ATTAAAGG1- C241T G5572T G11083T C14805T C21575T G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_511891
 2020-03-08 2020-08-10
 Vietnam hCoV-19/Vietnam/VNHN_0207/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23403G GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_516079 MT483878
 2020-03-08 2020-05-18
 Italy SARS-CoV-2/human/ITA/32898/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T C3037T A3219G C14408T C20956Y A23403G A26530G GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_516633
 2020-03-08 2020-08-21
 Germany hCoV-19/Berlin/ChVir-D658-5/2020
 ATTAAAGGTTTAT1- C241T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_516641
 2020-03-08 2020-08-21
 Germany hCoV-19/Berlin/ChVir-W1191-13/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATC1- C241T C3037T C14408T A23403G ACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29761-

EPI_ISL_525586
 2020-03-08 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-11679-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T A26161- TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_525587
 2020-03-08 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-11681-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_525588
 2020-03-08 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-11690-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_525589
 2020-03-08 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-11719-01/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T C1059T C3037T C8770Y C14408T A14480G A23403G G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_525590
 2020-03-08 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-11789-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_527955
 2020-03-08 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42181327/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G AAAAAAAAA29895-

EPI_ISL_529034
 2020-03-08 2020-09-09
 United States hCoV-19/USA/NY-Wadsworth-11661-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T T20961C A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_530033
 2020-03-08 2020-09-10
 Spain hCoV-19/Spain/MD-LP104-3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1758T A1788C C3037T C14408T C18131T A20268G A23403G G28027C G29734C ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_538267 MW010248
 2020-03-08 2020-09-16
 United States SARS-CoV-2/human/USA/MD-MDH-0183/2020
 C241T GTTATG515- C884T C3037T C14408T C18877T A23403G G25563T T29867A C29870G

EPI_ISL_539515
 2020-03-08 2020-09-18
 Spain hCoV-19/Spain/AR-ISCIII-201782/2020
 G11083T C18326T G26144T

EPI_ISL_539516
 2020-03-08 2020-09-18
 Spain hCoV-19/Spain/AR-ISCIII-201784/2020
 T7991C G11083T G26144T

EPI_ISL_539517
 2020-03-08 2020-09-18
 Spain hCoV-19/Spain/AR-ISCIII-201848/2020
 G11071C G11083T C13134G G19872T

EPI_ISL_547457
 2020-03-08 2020-09-24
 Netherlands hCoV-19/Netherlands/FR-RIVM-10083/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T1570C G11083T C14805T T17247C G26144T G28086T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547458
 2020-03-08 2020-09-24
 Netherlands hCoV-19/Netherlands/FR-RIVM-10084/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T1570C G11083T C14805T T17247C G26144T G28086T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547460
 2020-03-08 2020-09-24
 Netherlands hCoV-19/Netherlands/GE-RIVM-10088/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T18513C A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566049
 2020-03-08 2020-10-01
 United Kingdom hCoV-19/England/201100832/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T G15438K A23403G GGG28881AAC GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

MT325572
 2020-03-08 2020-04-10
 United States SARS-CoV-2/human/USA/GA_2118/2020
 T490A C3177T C8782T G14118A T18736C C24034T T26729C G28077C T28144C A29700G AAAAAAAAAAAAAAAAAAAAA29883-

MT325576
 2020-03-08 2020-04-10
 United States SARS-CoV-2/human/USA/IA_6394/2020
 C241T T3011C C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAA29883-

MT325589
 2020-03-08 2020-04-10
 United States SARS-CoV-2/human/USA/NC_0024/2020
 C241T C2416T C3037T C14408T G14707K A23403G G25563T G26233T G28812K AAAAAAAAAAAAAAAAAAAAA29883-

MT325598
 2020-03-08 2020-04-10
 United States SARS-CoV-2/human/USA/OH_0023/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MT325602
 2020-03-08 2020-04-10
 United States SARS-CoV-2/human/USA/PA_2937/2020
 C241T C2416T C3037T C14408T T15393Y A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MT325608
 2020-03-08 2020-04-10
 United States SARS-CoV-2/human/USA/SC_6370/2020
 T490A C3177T C6525Y C8782T C8956T C17074Y T18736C C24034T T26729C G28077C T28144C A29700G AAAAAAAAAAAAAAAAAAAAA29883-

MT325611
 2020-03-08 2020-04-10
 United States SARS-CoV-2/human/USA/VA_6352/2020
 C241T C3037T C14408T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MT325612
 2020-03-08 2020-04-10
 United States SARS-CoV-2/human/USA/VA_6377/2020
 C241T C3037T C14408T GG18505RK C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MT325613
 2020-03-08 2020-04-10
 United States SARS-CoV-2/human/USA/VA_6382/2020
 C8782T C17747T A17858G C18060T G18756K T28144C AAAAAAAAAAAAAAAAAAAAA29883-

MT325614
 2020-03-08 2020-04-10
 United States SARS-CoV-2/human/USA/VA_6389/2020
 C241T C3037T G11417T C14408T A23403G AAAAAAAAAAAAAAAAAAAAA29883-

MT325617
 2020-03-08 2020-04-10
 United States SARS-CoV-2/human/USA/IA_6396/2020
 C241T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAA29883-

MT325618
 2020-03-08 2020-04-10
 United States SARS-CoV-2/human/USA/IA_6395/2020
 C241T T3011C C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAA29883-

MT325619
 2020-03-08 2020-04-10
 United States SARS-CoV-2/human/USA/IA_6401/2020
 C241T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAA29883-

MT325620
 2020-03-08 2020-04-10
 United States SARS-CoV-2/human/USA/IA_6399/2020
 C241T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAA29883-

MT509474
 2020-03-08 2020-05-22
 United States SARS-CoV-2/human/USA/MD-HP00075/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT810552
 2020-03-08 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0415-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C8782T C17747T A17858G C18060T T28144C CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810580
 2020-03-08 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0460-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C8782T C17747T A17858G C18060T T28144C CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_414544 LR878330
 2020-03-09 2020-03-13
 Netherlands hCoV-19/Netherlands/NoordBrabant_35/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- G2198A C6255T C10456T C17410T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_414590 MT188339
 2020-03-09 2020-03-13
 United States USA/MN3-MDH3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1102T C8782T C17747T A17858G C18060T T21147C C21386T C22432T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_415460 LR878335
 2020-03-09 2020-03-17
 Netherlands hCoV-19/Netherlands/Flevoland_1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C1059T C3037T C14408T A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415462 LR878318
 2020-03-09 2020-03-17
 Netherlands hCoV-19/Netherlands/Gelderland_2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T C14408T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415463 LR878331
 2020-03-09 2020-03-17
 Netherlands hCoV-19/Netherlands/Gelderland_3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415466 LR878215
 2020-03-09 2020-03-17
 Netherlands hCoV-19/Netherlands/NA_10/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C1059T C3037T C14408T A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415473 LR878350
 2020-03-09 2020-03-17
 Netherlands hCoV-19/Netherlands/NA_17/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C1594T C3037T C11109T C14408T A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415474 LR878352
 2020-03-09 2020-03-17
 Netherlands hCoV-19/Netherlands/NA_18/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C1594T C3037T C11109T C14408T A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415480 LR878092
 2020-03-09 2020-03-17
 Netherlands hCoV-19/Netherlands/NA_23/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T G4255T C5284T C14408T T16456G C20051T A23403G C24117T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415482 LR878086
 2020-03-09 2020-03-17
 Netherlands hCoV-19/Netherlands/NA_25/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T C14408T A23403G G25855T C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415483 LR878109
 2020-03-09 2020-03-17
 Netherlands hCoV-19/Netherlands/NA_26/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T C10741T C14408T A23403G C27046T C28344A GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415496 LR878357
 2020-03-09 2020-03-17
 Netherlands hCoV-19/Netherlands/NA_7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415497 LR878216
 2020-03-09 2020-03-17
 Netherlands hCoV-19/Netherlands/NA_8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T C14408T C22277A A23403G C27046T GGG28881AAC G29290T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415498 LR878217
 2020-03-09 2020-03-17
 Netherlands hCoV-19/Netherlands/NA_9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T C14408T A23403G C27046T C28344A GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415502 LR878339
 2020-03-09 2020-03-17
 Netherlands hCoV-19/Netherlands/NoordBrabant_45/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415508 LR878355
 2020-03-09 2020-03-17
 Netherlands hCoV-19/Netherlands/NoordBrabant_52/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- T514C ATG1605- TCA12620- C17410T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415510 LR878354
 2020-03-09 2020-03-17
 Netherlands hCoV-19/Netherlands/NoordBrabant_54/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- T514C ATG518- G1018A ATG1605- C16762T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415511 LR878337
 2020-03-09 2020-03-17
 Netherlands hCoV-19/Netherlands/NoordBrabant_55/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T C14408T C22277A A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415512 LR878320
 2020-03-09 2020-03-17
 Netherlands hCoV-19/Netherlands/NoordBrabant_56/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- T1570C G11083T C14805T T17247C T21462C G26144T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415529 LR878333
 2020-03-09 2020-03-17
 Netherlands hCoV-19/Netherlands/ZuidHolland_25/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415530 LR878327
 2020-03-09 2020-03-17
 Netherlands hCoV-19/Netherlands/ZuidHolland_26/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T C14408T C22277A A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415531 LR878323
 2020-03-09 2020-03-17
 Netherlands hCoV-19/Netherlands/ZuidHolland_27/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- G1440A G2891A C7011T C23996T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415532 LR878328
 2020-03-09 2020-03-17
 Netherlands hCoV-19/Netherlands/ZuidHolland_28/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T C14408T A23403G T25187C G28300T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415533 LR878322
 2020-03-09 2020-03-17
 Netherlands hCoV-19/Netherlands/ZuidHolland_29/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415592 MT252787
 2020-03-09 2020-03-18
 United States SARS-CoV-2/human/USA/WA-UW64/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATA1- C8782T T16242C C17747T A17858G C18060T T28144C G29628T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_415595 MT252793
 2020-03-09 2020-03-18
 United States SARS-CoV-2/human/USA/WA-UW67/2020
 ATTAAA1- GGT7AAC T11A C8782T C17747T A17858G C18060T T28144C C29870A A29903G

EPI_ISL_415596 MT252788
 2020-03-09 2020-03-18
 United States SARS-CoV-2/human/USA/WA-UW68/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAA1- C8782T C17747T A17858G C18060T T23010C T28144C TG29867AA

EPI_ISL_415600 MT252789
 2020-03-09 2020-03-18
 United States SARS-CoV-2/human/USA/WA-UW72/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTG1- C5784T C8782T C9836T C17747T A17858G C18060T T28144C C28344T A29866V A29869T

EPI_ISL_415607 MT252803
 2020-03-09 2020-03-18
 United States SARS-CoV-2/human/USA/WA-UW42/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- T150C T153G A3635G C8782T T15849C C17747T A17858G C18060T T28144C AAAAAAA29897-

EPI_ISL_415611 MT252806
 2020-03-09 2020-03-18
 United States SARS-CoV-2/human/USA/WA-UW46/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C8782T C17747T A17858G C18060T T27384C T28144C -29904ANANANANA

EPI_ISL_415612 MT252807
 2020-03-09 2020-03-18
 United States SARS-CoV-2/human/USA/WA-UW47/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- AACC34HWTH C1419T C8782T G14126A C17747T A17858G C18060T T28144C -29904ANANANADA

EPI_ISL_415613 MT252808
 2020-03-09 2020-03-18
 United States SARS-CoV-2/human/USA/WA-UW48/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C8782T C17747T A17858G C18060T T28144C -29904ANANAAVC

EPI_ISL_415614 MT252809
 2020-03-09 2020-03-18
 United States SARS-CoV-2/human/USA/WA-UW49/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCT1- C8782T C17747T A17858G C18060T T28144C CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_415617 MT252815
 2020-03-09 2020-03-18
 United States SARS-CoV-2/human/USA/WA-UW52/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAA1- C8782T C17747T A17858G C18060T T28144C A29869H A29903-

EPI_ISL_415619 MT252813
 2020-03-09 2020-03-18
 United States SARS-CoV-2/human/USA/WA-UW54/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C8782T C17747T A17858G C18060T T28144C -29904ANANANANANA

EPI_ISL_415620 MT252814
 2020-03-09 2020-03-18
 United States SARS-CoV-2/human/USA/WA-UW55/2020
 ATTAAAGGTTTATACCTT1- G8083T C8782T C17747T A17858G C18060T T27384C T28144C -29904ANANANANA

EPI_ISL_415621 MT252812
 2020-03-09 2020-03-18
 United States SARS-CoV-2/human/USA/WA-UW56/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAA1- C8782T C12915T C17747T A17858G C18060T T28144C A29903-

EPI_ISL_415622 MT252816
 2020-03-09 2020-03-18
 United States SARS-CoV-2/human/USA/WA-UW57/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAA1- C8782T C17747T A17858G C18060T C21380T T28144C GA29868CT

EPI_ISL_415624 MT252818
 2020-03-09 2020-03-18
 United States SARS-CoV-2/human/USA/WA-UW59/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAA1- C6310T C8782T C17747T A17858G C18060T G27327T T28144C AA29902-

EPI_ISL_415625 MT252820
 2020-03-09 2020-03-18
 United States SARS-CoV-2/human/USA/WA-UW60/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C1059T C3037T C14408T A23403G G25563T G29553A A29865C GA29868CT AA29902-

EPI_ISL_415627 MT252817
 2020-03-09 2020-03-18
 United States SARS-CoV-2/human/USA/WA-UW62/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAAC19- C37T C4754T G8602A C8782T C17747T A17858G C18060T G26152A T28144C

EPI_ISL_415630
 2020-03-09 2020-03-18
 United Kingdom hCoV-19/Scotland/CVR07/2020
 A2480G C2558T C2918T C5340T G11083T C14805T G26144T

EPI_ISL_415654
 2020-03-09 2020-03-18
 France hCoV-19/France/HF2174/2020
 C241T C2416T C3037T A12745G C14408T C20234T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_416682 MT252760
 2020-03-09 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW144/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGC1- C8782T C17403T C17747T A17858G C18060T G22984A T27384C T28144C A29903-

EPI_ISL_416734
 2020-03-09 2020-03-23
 United Kingdom hCoV-19/England/SHEF-BFCFD/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_416739
 2020-03-09 2020-03-23
 United Kingdom hCoV-19/England/SHEF-BFD45/2020
 G431A C20270T A29683T

EPI_ISL_417311
 2020-03-09 2020-03-25
 United Kingdom hCoV-19/England/20110058706/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_417389
 2020-03-09 2020-03-25
 Australia hCoV-19/Australia/NSW26/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1397A C2113T A9483G G11083T C18928T G24227A T28688C G29374A G29742T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417520 MT374103
 2020-03-09 2020-03-27
 Taiwan SARS-CoV-2/human/TWN/CGMH-CGU-07/2020
 ATTAAAGGTTT1- C1059T G1397A G11083T C19547T C23934T T28648C T28688C G29742T AAAAAA29898-

EPI_ISL_417861
 2020-03-09 2020-03-27
 Iceland hCoV-19/Iceland/73/2020
 C241T C842T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_417862
 2020-03-09 2020-03-27
 Iceland hCoV-19/Iceland/77/2020
 C241T C3037T C14408T A23403G C27046T C28344A GGG28881AAC

EPI_ISL_417863
 2020-03-09 2020-03-27
 Iceland hCoV-19/Iceland/78/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_417865
 2020-03-09 2020-03-27
 Iceland hCoV-19/Iceland/80/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_417866
 2020-03-09 2020-03-27
 Iceland hCoV-19/Iceland/81/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_417867
 2020-03-09 2020-03-27
 Iceland hCoV-19/Iceland/82/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC T29104C

EPI_ISL_417868
 2020-03-09 2020-03-27
 Iceland hCoV-19/Iceland/83/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_417952
 2020-03-09 2020-03-27
 Spain hCoV-19/Spain/Madrid_H2_16/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- G11083T G26144T CCAATGGAGATTGAT27370- AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_417969
 2020-03-09 2020-03-27
 Spain hCoV-19/Spain/Madrid_LP10_12/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T A361G C3037T A9204G A20268G A21352G CA22006AC A23403G C26456T T27740C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_417972
 2020-03-09 2020-03-27
 Spain hCoV-19/Spain/Madrid_LP12_21/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T T18099C A23403G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_417975
 2020-03-09 2020-03-27
 Spain hCoV-19/Spain/Madrid_LP14_3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- G11083T C14805T T17247C G26144T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_417978
 2020-03-09 2020-03-27
 Spain hCoV-19/Spain/Madrid_LP15_4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C6286T C14408T A20268G A23403G C24422A AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_418014
 2020-03-09 2020-03-28
 Portugal hCoV-19/Portugal/PT0029/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G C25791T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_418015
 2020-03-09 2020-03-28
 Portugal hCoV-19/Portugal/PT0030/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G C25791T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_418226
 2020-03-09 2020-03-29
 France hCoV-19/France/HF2381/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418339
 2020-03-09 2020-03-09
 Canada hCoV-19/Canada/ON_PHL3877/2020
 A1- C8782T T10771C C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418340
 2020-03-09 2020-03-09
 Canada hCoV-19/Canada/ON_PHL1083/2020
 A1- C6990T C8782T T10771C C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418353
 2020-03-09 2020-03-09
 Canada hCoV-19/Canada/ON_PHL0539/2020
 A1- C241T C2416T C3037T A5937C C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418668
 2020-03-09 2020-03-30
 United Kingdom hCoV-19/England/20110136302/2020
 C241T C2416T C3037T C14408T G20578T A23403G G25563T

EPI_ISL_418819
 2020-03-09 2020-03-31
 Canada hCoV-19/Canada/BC_3808524/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_418820
 2020-03-09 2020-03-31
 Canada hCoV-19/Canada/BC_3842755/2020
 C8782T C14724T C17747T A17858G C18060T T28144C

EPI_ISL_418823
 2020-03-09 2020-03-31
 Canada hCoV-19/Canada/BC_3989992/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_418830
 2020-03-09 2020-03-31
 Canada hCoV-19/Canada/BC_4799711/2020
 C5170T C8782T C16468T T17673C A17858G C18060T T28144C

EPI_ISL_418982
 2020-03-09 2020-03-31
 Belgium hCoV-19/Belgium/HAA-030953/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_418983
 2020-03-09 2020-03-31
 Belgium hCoV-19/Belgium/DWAEE-030954/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10741T C14408T A23403G C27046T C28344A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_418984
 2020-03-09 2020-03-31
 Belgium hCoV-19/Belgium/BG-030955/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A13947T C14408T C21676T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_418985
 2020-03-09 2020-03-31
 Belgium hCoV-19/Belgium/LT-030956/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T G29291A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_419261 MT322402
 2020-03-09 2020-04-08
 United States SARS-CoV-2/human/USA/VA-DCLS-0009/2020
 ATTAA1- C241T C3037T C14408T C18877T A23403G G25563T C29870A

EPI_ISL_419262 MT322403
 2020-03-09 2020-04-08
 United States SARS-CoV-2/human/USA/VA-DCLS-0010/2020
 ATTAAAGGTTT1- C8782T C17747T A17858G C18060T G18756T T28144C AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_419299 LC547521
 2020-03-09 2020-04-02
 Japan hCoV-19/Japan/P3-1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C3037T C4321T C14408T C18877T A23403G G25563T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_419676
 2020-03-09 2020-04-03
 Spain hCoV-19/Spain/Valencia12/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_419677
 2020-03-09 2020-04-03
 Spain hCoV-19/Spain/Valencia13/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_419678
 2020-03-09 2020-04-03
 Spain hCoV-19/Spain/Valencia14/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T9477A C14805T G24928T G25979T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_419740 MT450936
 2020-03-09 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC21/2020
 ATTA1- A2480G C2558T T6971C G6975T G6977A C9170T G11083T C14805T G26144T C26464T

EPI_ISL_419742 MT450937
 2020-03-09 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC22/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C1059T C3037T C6638T C14408T A20755C A23403G G25563T

EPI_ISL_419743 MT450938
 2020-03-09 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC23/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- A2480G C2558T T6971C G6975T G6977A C9170T G11083T C14805T G26144T

EPI_ISL_420107
 2020-03-09 2020-04-05
 Singapore hCoV-19/Singapore/30/2020
 ATTAAAGGTTTATACCTTCCCAG1- C8782T G18040T ACTTGAACTGCAAGATCATAATGAAACTTGTCACGCCTAAACGAACATGAAATTTCTTGTTTTCTTAGGAATCATCACAACTGTAGCTGCATTTCACCAAGAATGTAGTTTACAGTCATGTACTCAACATCAACCATATGTAGTTGATGACCCGTGTCCTATTCACTTCTATTCTAAATGGTATATTAGAGTAGGAGCTAGAAAATCAGCACCTTTAATTGAATTGTGCGTGGATGAGGCTGGTTCTAAATCACCCATTCAGTACATCGATATCGGTAATTATACAGTTTCCTGTTTACCTTTTACAATTAATTGCCAGGAACCTAAATTGGGTAGTCTTGTAGTGCGTTGTTCGTTCTATGAAGACTTTTTAGAGTATCAT27848- TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_420112
 2020-03-09 2020-04-05
 Spain hCoV-19/Spain/Valencia27/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420113
 2020-03-09 2020-04-05
 Spain hCoV-19/Spain/Valencia28/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C8782T T9477A C14805T C20582T G25979T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420114
 2020-03-09 2020-04-05
 Spain hCoV-19/Spain/Valencia29/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C8782T T9477A C14805T C21697T G25979T T28144C C28657T C28863T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_420115
 2020-03-09 2020-04-05
 Spain hCoV-19/Spain/Valencia30/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C1707T C8782T T9477A C14805T C20801T G25979T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420116
 2020-03-09 2020-04-05
 Spain hCoV-19/Spain/Valencia31/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420117
 2020-03-09 2020-04-05
 Spain hCoV-19/Spain/Valencia32/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420118
 2020-03-09 2020-04-05
 Spain hCoV-19/Spain/Valencia33/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420119
 2020-03-09 2020-04-05
 Spain hCoV-19/Spain/Valencia34/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_420120
 2020-03-09 2020-04-05
 Spain hCoV-19/Spain/Valencia35/2020
 ATTA1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_420121
 2020-03-09 2020-04-05
 Spain hCoV-19/Spain/Valencia36/2020
 ATTAAAGGTT1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420122
 2020-03-09 2020-04-05
 Spain hCoV-19/Spain/Valencia37/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420123
 2020-03-09 2020-04-05
 Spain hCoV-19/Spain/Valencia38/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420124
 2020-03-09 2020-04-05
 Spain hCoV-19/Spain/Valencia39/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420145
 2020-03-09 2020-04-05
 Norway hCoV-19/Norway/1951/2020
 ATTAAAGGTT1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_420150
 2020-03-09 2020-04-05
 Norway hCoV-19/Norway/2084/2020
 ATTAAAGGT1- C241T A761G C1059T C3037T A6825C C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_420320
 2020-03-09 2020-04-06
 Belgium hCoV-19/Belgium/030959/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C8394T C12260G C14408T C15324T A23403G A28804G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_420338
 2020-03-09 2020-04-06
 Belgium hCoV-19/Belgium/AC-030982/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420346
 2020-03-09 2020-04-06
 Belgium hCoV-19/Belgium/SB-030990/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T A13947T A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_420445
 2020-03-09 2020-04-06
 Belgium hCoV-19/Belgium/FAE-030948/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G C25433T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420452
 2020-03-09 2020-04-06
 Belgium hCoV-19/Belgium/RDC-030961/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420890 LC534419
 2020-03-09 2020-03-19
 Japan SARS-CoV-2/Hu/Kng/19-437
 ATTAAAGGTTTA1- T13C C11752T G29140T AAAAAAAAAAAAAAAAA29887-

EPI_ISL_421172
 2020-03-09 2020-04-07
 Spain hCoV-19/Spain/Madrid_H12_1502/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6248C C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_422642 LR877927
 2020-03-09 2020-04-11
 Netherlands hCoV-19/Netherlands/Gelderland_6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422809 LR878150
 2020-03-09 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_48/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T T17247C G26144T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422821 LR878143
 2020-03-09 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_60/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T T17247C G26144T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422822 LR878139
 2020-03-09 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_61/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4255T C14408T A23403G A26530G A29419G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422823 LR878148
 2020-03-09 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_62/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422827 LR878153
 2020-03-09 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_67/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- C14768T G29000T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422837 LR878157
 2020-03-09 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_77/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- C17410T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422862 LR878204
 2020-03-09 2020-04-11
 Netherlands hCoV-19/Netherlands/NoordBrabant_103/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C14583T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422863 LR878199
 2020-03-09 2020-04-11
 Netherlands hCoV-19/Netherlands/NoordBrabant_104/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422870 LR877742
 2020-03-09 2020-04-11
 Netherlands hCoV-19/Netherlands/NoordBrabant_74/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422871 LR877743
 2020-03-09 2020-04-11
 Netherlands hCoV-19/Netherlands/NoordBrabant_75/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- C17410T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422872 LR877751
 2020-03-09 2020-04-11
 Netherlands hCoV-19/Netherlands/NoordBrabant_76/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422879 LR877761
 2020-03-09 2020-04-11
 Netherlands hCoV-19/Netherlands/NoordBrabant_85/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422880 LR877767
 2020-03-09 2020-04-11
 Netherlands hCoV-19/Netherlands/NoordBrabant_86/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C23638T C28139A GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422881 LR877764
 2020-03-09 2020-04-11
 Netherlands hCoV-19/Netherlands/NoordBrabant_87/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- C22498T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_424054
 2020-03-09 2020-04-12
 United Kingdom hCoV-19/England/20129059204/2020
 C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_424848
 2020-03-09 2020-04-13
 United States hCoV-19/USA/AZ_8132/2020
 C8782T A16628G C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424849
 2020-03-09 2020-04-13
 United States hCoV-19/USA/AZ_8135/2020
 C8782T C17747T A17858G C18060T G18197R T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424866
 2020-03-09 2020-04-13
 United States hCoV-19/USA/IN_2001/2020
 C241T C3037T C14408T GG18505RK A23403G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424868
 2020-03-09 2020-04-13
 United States hCoV-19/USA/LA_0842/2020
 C241T C1059T C3037T C10319T A14012T C14408T C17894T A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424879
 2020-03-09 2020-04-13
 United States hCoV-19/USA/NV_0052/2020
 A2480G C2558T A4912C G11083T C14805T C17010A C21575T G26144T A27151R AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424885
 2020-03-09 2020-04-13
 United States hCoV-19/USA/PA_4395/2020
 C241T C3037T C14408T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_425799
 2020-03-09 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR68/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC G29540T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_425801
 2020-03-09 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR70/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A26530G C27524T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425809
 2020-03-09 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR79/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C23575T G23587C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_425845
 2020-03-09 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB039/2020
 C241T A23403G

EPI_ISL_426424 MT344952
 2020-03-09 2020-04-15
 United States SARS-CoV-2/human/USA/IN_92003/2020
 C203Y C241T C2416T C3037T A4364M C14408T A23403G C25169T G25563T CGAGGCCACGCGGAGTACGAT29733- AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426435 MT344960
 2020-03-09 2020-04-15
 United States SARS-CoV-2/human/USA/RI_0882/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_428674
 2020-03-09 2020-04-21
 Spain hCoV-19/Spain/Madrid_LP11_2271/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C8782T G11083T A23403G C26088T G26144T T28144C TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_428675
 2020-03-09 2020-04-21
 Spain hCoV-19/Spain/Madrid_LP16_6193/2020
 ATTAAAGGTTTATACCTTCCCAG1- C8782T A23403G C26088T T28144C TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_428680
 2020-03-09 2020-04-21
 Spain hCoV-19/Spain/Madrid_LP24_5999/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A20268G A23403G G29734C -29826T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_428699
 2020-03-09 2020-04-21
 Spain hCoV-19/Spain/Madrid_H12_36/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C4540T C8782T T9477A C14805T G25979T T28144C C28657T C28863T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_429155
 2020-03-09 2020-04-23
 Sweden hCoV-19/Sweden/20-50230/2020
 C241T C2416T C3037T C14408T A23403G G25563T

EPI_ISL_429156
 2020-03-09 2020-04-23
 Sweden hCoV-19/Sweden/20-50232/2020
 C241T C3037T A12790G C13568T C14408T A23403G

EPI_ISL_429343
 2020-03-09 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI111/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429345
 2020-03-09 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI114/2020
 C241T C1059T C3037T C14408T A23403G G25563T G29705T

EPI_ISL_429358
 2020-03-09 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI139/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429360
 2020-03-09 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI142/2020
 G1440A G2891A C7011T

EPI_ISL_429361
 2020-03-09 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI143/2020
 C241T C1059T C3037T C14408T C18377T A23403G G25563T

EPI_ISL_429364
 2020-03-09 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI146/2020
 C241T C1059T C3037T A6825C C14408T A23403G G25563T

EPI_ISL_429368
 2020-03-09 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI150/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429369
 2020-03-09 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI151/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429370
 2020-03-09 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI154/2020
 C241T C1059T C3037T C14408T G17314A A23403G G25563T

EPI_ISL_429373
 2020-03-09 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI157/2020
 G1440A G2891A C7011T

EPI_ISL_429374
 2020-03-09 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI158/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429375
 2020-03-09 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI159/2020
 C241T C1059T C3037T C3743T C14408T A23403G G25563T

EPI_ISL_429376
 2020-03-09 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI160/2020
 C241T C1059T C3037T C3743T C14408T A23403G G25563T

EPI_ISL_429377
 2020-03-09 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI162/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429378
 2020-03-09 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI163/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429379
 2020-03-09 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI164/2020
 C241T C1059T C3037T C14408T G15380T A23403G G25563T

EPI_ISL_429381
 2020-03-09 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI167/2020
 C241T C1059T C3037T A6825C C14408T A23403G G25563T

EPI_ISL_429382
 2020-03-09 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI168/2020
 C241T C1059T C3037T C14408T C19263T A23403G G25563T

EPI_ISL_429383
 2020-03-09 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI169/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429384
 2020-03-09 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI171/2020
 C241T C1059T C3037T A6825C C14408T A23403G G25563T

EPI_ISL_429385
 2020-03-09 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI172/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429386
 2020-03-09 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI173/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429387
 2020-03-09 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI174/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429395
 2020-03-09 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI194/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429396
 2020-03-09 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI195/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429399
 2020-03-09 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI201/2020
 C241T C3037T C14408T A23403G G27163T G28329T

EPI_ISL_429402
 2020-03-09 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI204/2020
 C241T C1059T C3037T C14408T A23403G G25563T C29509T

EPI_ISL_429414
 2020-03-09 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI235/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_429495
 2020-03-09 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI402/2020
 C241T C1059T C3037T C14408T G15380T A23403G G25563T

EPI_ISL_429667
 2020-03-09 2020-04-24
 Brazil hCoV-19/Brazil/CV4/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C3037T C14408T C18877T A23403G G25563T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_429806
 2020-03-09 2020-04-24
 Canada hCoV-19/Canada/NB_1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G C25433T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_430134
 2020-03-09 2020-04-26
 United States hCoV-19/USA/WA-S280/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_430720
 2020-03-09 2020-04-27
 Spain hCoV-19/Spain/Madrid-LP32/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T A20268G A23403G G29734C TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859G

EPI_ISL_430863
 2020-03-09 2020-04-28
 Sweden hCoV-19/Sweden/20-50231/2020
 C241T C2416T C3037T C14408T A23403G G25563T

EPI_ISL_434126 MT632990
 2020-03-09 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S366/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434455
 2020-03-09 2020-04-29
 Greece hCoV-19/Greece/133/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C6312G C14408T C18877T A23403G G25563T G29861T GAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29864T

EPI_ISL_434484
 2020-03-09 2020-04-29
 Greece hCoV-19/Greece/148/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGG28881AAC TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_434744
 2020-03-09 2020-05-01
 United States hCoV-19/USA/TX-HMH035/2020
 C241T C1059T C3037T C14408T A23403G G23755T G25563T

EPI_ISL_434745
 2020-03-09 2020-05-01
 United States hCoV-19/USA/TX-HMH036/2020
 C241T C1059T C3037T C14408T A23403G G23755T G25563T

EPI_ISL_434753
 2020-03-09 2020-05-01
 United States hCoV-19/USA/TX-HMH044/2020
 C241T C1059T C3037T C14408T C21648T A23403G G25563T

EPI_ISL_435308
 2020-03-09 2020-05-04
 Vietnam hCoV-19/Vietnam/VNHN_0299/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T C3037T C14408T A23403G GGG28881AAC AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_435310
 2020-03-09 2020-05-04
 Vietnam hCoV-19/Vietnam/VNHN_0300/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C6027T C14408T A23403G GGG28881AAC GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_435621
 2020-03-09 2020-05-05
 United States hCoV-19/USA/CA-SCCPHD-UC142/2020
 A25443C

EPI_ISL_436049 MT434787
 2020-03-09 2020-05-05
 United States SARS-CoV-2/human/USA/NY-CDC-SURV0097NYC/2020
 C1625T C14805T T17247C G26144T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_436051 MT434788
 2020-03-09 2020-05-05
 United States SARS-CoV-2/human/USA/NY-CDC-SURV0162NYC/2020
 C241T C1059T C10851T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_436052 MT434783
 2020-03-09 2020-05-05
 United States SARS-CoV-2/human/USA/NY-CDC-SURV0165NYC/2020
 C1625T A10155R G11083T C12992T A13265T C14805T T17247C G26144T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_436053 MT434784
 2020-03-09 2020-05-05
 United States SARS-CoV-2/human/USA/NY-CDC-SURV0166NYC/2020
 C1625T G11083T A13265T C14805T T17247C G26144T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_436054 MT434814
 2020-03-09 2020-05-05
 United States SARS-CoV-2/human/USA/NY-CDC-SURV0168NYC/2020
 C1625T G11083T A13265T C14805T T17247C G26144T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_436055 MT434789
 2020-03-09 2020-05-05
 United States SARS-CoV-2/human/USA/NY-CDC-SURV0171NYC/2020
 C241T C2592A C14408T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_436056 MT434815
 2020-03-09 2020-05-05
 United States SARS-CoV-2/human/USA/NY-CDC-SURV0175NYC/2020
 C241T C1059T C14408T A23403G G25563T C27549T GCAAACTGT29440- T29726W AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_436060 MT434793
 2020-03-09 2020-05-05
 United States SARS-CoV-2/human/USA/NY-CDC-SURV0302NYC/2020
 C241T C1059T C11916T C14408T C18998T A23403G G25563T G29540A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_436062 MT434795
 2020-03-09 2020-05-05
 United States SARS-CoV-2/human/USA/NY-CDC-SURV0331NYC/2020
 C241T C1059T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_436063 MT434796
 2020-03-09 2020-05-05
 United States SARS-CoV-2/human/USA/NY-CDC-SURV0334NYC/2020
 C241T C14408T A20268G A23403G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_436066 MT434798
 2020-03-09 2020-05-05
 United States SARS-CoV-2/human/USA/NY-CDC-SURV0440NYC/2020
 C241T C1059T C11916T C14408T C18998T A23403G G25563T G29540A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_436067 MT434799
 2020-03-09 2020-05-05
 United States SARS-CoV-2/human/USA/NY-CDC-SURV0444NYC/2020
 C241T C1059T C14408T C21846T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_436068 MT434800
 2020-03-09 2020-05-05
 United States SARS-CoV-2/human/USA/NY-CDC-SURV0472NYC/2020
 C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_436069 MT434801
 2020-03-09 2020-05-05
 United States SARS-CoV-2/human/USA/NY-CDC-SURV0475NYC/2020
 C241T C1059T C10851T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_436076 MT434807
 2020-03-09 2020-05-05
 United States SARS-CoV-2/human/USA/NY-CDC-SURV0874NYC/2020
 C5730T C14805T T17247C G18985T G26144T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_436963
 2020-03-09 2020-05-08
 Denmark hCoV-19/Denmark/ALAB-SSI-197/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_437913
 2020-03-09 2020-05-12
 Austria hCoV-19/Austria/CeMM0023/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_437914
 2020-03-09 2020-05-12
 Austria hCoV-19/Austria/CeMM0024/2020
 C241T C1059T C3037T C14408T T22521K A23403G G25563T ACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29695-

EPI_ISL_437915
 2020-03-09 2020-05-12
 Austria hCoV-19/Austria/CeMM0025/2020
 C241T C1059T C3037T C14408T G21204T A23403G G25563T G29511T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_437917
 2020-03-09 2020-05-12
 Austria hCoV-19/Austria/CeMM0028/2020
 C241T C1059T C3037T C14408T G15380T T22521K A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_437918
 2020-03-09 2020-05-12
 Austria hCoV-19/Austria/CeMM0029/2020
 C241T C1059T C3037T C3992Y G3994K A10037M C14408T T22521K A23403G C25509T G25563T ACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29695-

EPI_ISL_437919
 2020-03-09 2020-05-12
 Austria hCoV-19/Austria/CeMM0030/2020
 C241T C1059T C3037T C14408T T22521K A23403G G25563T G29783T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_437920
 2020-03-09 2020-05-12
 Austria hCoV-19/Austria/CeMM0031/2020
 C241T C1059T C3037T C14408T T22521K A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_437925
 2020-03-09 2020-05-12
 Austria hCoV-19/Austria/CeMM0036/2020
 C241T C1059T C3037T C14408T G20419T T22521K A23403G G25563T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_437926
 2020-03-09 2020-05-12
 Austria hCoV-19/Austria/CeMM0037/2020
 C241T C1059T C3037T C14408T T22521K A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_437927
 2020-03-09 2020-05-12
 Austria hCoV-19/Austria/CeMM0038/2020
 C241T C1059T C3037T C14408T G15380K A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_437930
 2020-03-09 2020-05-12
 Austria hCoV-19/Austria/CeMM0042/2020
 C241T C1059T C3037T C14408T A18760R T22521K A23403G G25563T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_437931
 2020-03-09 2020-05-12
 Austria hCoV-19/Austria/CeMM0043/2020
 G1440A G2891R C7011T C9693T T22521K TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_438022
 2020-03-09 2020-05-12
 Austria hCoV-19/Austria/CeMM0180/2020
 C241T C3037T G12832A G14335K C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_438023
 2020-03-09 2020-05-12
 Austria hCoV-19/Austria/CeMM0181/2020
 C241T C3037T G12832A C14408T A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_438024
 2020-03-09 2020-05-12
 Austria hCoV-19/Austria/CeMM0182/2020
 C241T C3037T G12832A C14408T T22521K A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_442523
 2020-03-09 2020-05-12
 Iran hCoV-19/Iran/KHGRC-1.1-IPI-8206/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTC1- G1397A G11083T C18377T G29374A G29742T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_444833
 2020-03-09 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-1261/2020
 C241T C1059T C3037T C14408T G15380T A23403G G25563T

EPI_ISL_444834
 2020-03-09 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-1262/2020
 C241T C3037T C13499T C14408T A23403G C24096T C27046T GGG28881AAC

EPI_ISL_444835
 2020-03-09 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-1263/2020
 C241T C1392T C3037T C14408T A20268G A23403G C24026T C27012T

EPI_ISL_444836
 2020-03-09 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-1264/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_444837
 2020-03-09 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-1265/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_444838
 2020-03-09 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-1268/2020
 C241T C1059T C3037T C14408T C21699T A23403G G25563T

EPI_ISL_444839
 2020-03-09 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-1269/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_444840
 2020-03-09 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-1270/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_444893
 2020-03-09 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-762/2020
 C241T C1059T C3037T G9190T C14408T G15380T A23403G G25563T

EPI_ISL_445248
 2020-03-09 2020-05-15
 Chile hCoV-19/Chile/Santiago_5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C14408T G15286R A20268G A23403G ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_445249
 2020-03-09 2020-05-15
 Chile hCoV-19/Chile/Santiago_6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTC1- G11083T G26144T ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_445250
 2020-03-09 2020-05-15
 Chile hCoV-19/Chile/Santiago_7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C14408T A20268G A23403G GTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29828-

EPI_ISL_445252
 2020-03-09 2020-05-15
 Chile hCoV-19/Chile/Santiago_9/2020
 AT1GGACTTACAAC AA5TC G8ATCTCTT C241T C3037T C14408T A20268G A23403G G29734C CCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29835-

EPI_ISL_447122
 2020-03-09 2020-05-16
 Belgium hCoV-19/Belgium/ULG-8937/2020
 C241T C3037T G4255T T14022A C14408T A23403G A26530G

EPI_ISL_447251
 2020-03-09 2020-05-17
 Israel hCoV-19/Israel/CVL-n3120/2020
 C241T C643T C3037T C3787T C11916T C14408T C15324T A20431R G20464C A23403G

EPI_ISL_447645 MT459901
 2020-03-09 2020-05-11
 Greece SARS-CoV-2/human/GRC/238_31927/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_447651 MT459914
 2020-03-09 2020-05-11
 Greece SARS-CoV-2/human/GRC/259_31928/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_450093
 2020-03-09 2020-05-20
 United States hCoV-19/USA/NY-PV09413/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- G101A C241T C1059T C3037T C5183T C14408T A23403G C23997T G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450123
 2020-03-09 2020-05-20
 United States hCoV-19/USA/NY-PV09449/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G G25563T GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_450793 MT507271
 2020-03-09 2020-05-22
 Jamaica SARS-CoV-2/human/JAM/JM-CDC-0869/2020
 A2480G C2558T G11083T C14805T G26144T G28321A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_451988
 2020-03-09 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-101/2020
 C241T G885T C3037T C5884T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_451991
 2020-03-09 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-106/2020
 C241T C3037T C14408T A23403G G29447T

EPI_ISL_451992
 2020-03-09 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-107/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_451993
 2020-03-09 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-108/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_451994
 2020-03-09 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-110/2020
 C241T C1059T C3037T C14408T G15380T A23403G G25563T

EPI_ISL_451995
 2020-03-09 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-111/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_451996
 2020-03-09 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-112/2020
 C241T C1059T C1302T C3037T T10573C C11202T C11344T C14408T A23403G G25563T G26842A

EPI_ISL_451997
 2020-03-09 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-113/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_451998
 2020-03-09 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-114/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_451999
 2020-03-09 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-115/2020
 C241T C1059T C3037T C14408T G20709T A23403G G25563T

EPI_ISL_452000
 2020-03-09 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-116/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_452109 MT512437
 2020-03-09 2020-05-26
 United States SARS-CoV-2/human/USA/NM-CDC-3589/2020
 C241T C3037T C14408T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_452110 MT512438
 2020-03-09 2020-05-26
 United States SARS-CoV-2/human/USA/FL-CDC-6318/2020
 C241T C313T C1616Y C3037T C14408T A23403G C25521Y GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_452111 MT512439
 2020-03-09 2020-05-26
 United States SARS-CoV-2/human/USA/FL-CDC-2718/2020
 T490A C3177T C8782Y T18736C G19684T C24034T T26729C C27635Y G28077C T28144C A29700G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_452129 MT512429
 2020-03-09 2020-05-26
 United States SARS-CoV-2/human/USA/CO-CDC-5780/2020
 C8782Y C10818Y C14937T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_452131 MT512431
 2020-03-09 2020-05-26
 United States SARS-CoV-2/human/USA/IN-CDC-2013/2020
 T490A C3177T C8782Y T18736Y G19684T C24034T T26729C C27635Y G28077C T28144C A29700G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_452132 MT512415
 2020-03-09 2020-05-26
 United States SARS-CoV-2/human/USA/FL-CDC-2316/2020
 C241T GTTATG515- C884T C3037T C14408T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_452135 MT512418
 2020-03-09 2020-05-26
 United States SARS-CoV-2/human/USA/IN-CDC-2005/2020
 C241T C2416T C3037T C14408T A23403G C25169T G25563T CGAGGCCACGCGGAGTACGAT29733- AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_452136 MT512419
 2020-03-09 2020-05-26
 United States SARS-CoV-2/human/USA/IN-CDC-2006/2020
 C241T C2416T C3037T C14408T A23403G C25169T G25563T CGAGGCCACGCGGAGTACGAT29733- AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_452715
 2020-03-09 2020-05-27
 Spain hCoV-19/Spain/COV000812/2020
 T3022C C8782T T9477A C14805T G25979T T28144C C28657T C28863T

EPI_ISL_452721
 2020-03-09 2020-05-27
 Spain hCoV-19/Spain/COV000793/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T

EPI_ISL_452722
 2020-03-09 2020-05-27
 Spain hCoV-19/Spain/COV000792/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T

EPI_ISL_452726
 2020-03-09 2020-05-27
 Spain hCoV-19/Spain/COV000779/2020
 G1148T C8782T T9477A T12175G C14805T G25979T T28144C C28657T C28863T

EPI_ISL_454000
 2020-03-09 2020-05-28
 Portugal hCoV-19/Portugal/PT0285/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G C29144T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454001
 2020-03-09 2020-05-28
 Portugal hCoV-19/Portugal/PT0286a/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- C241T C3037T C14408T A23403G GGG28881AAC CGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29754-

EPI_ISL_454003
 2020-03-09 2020-05-28
 Portugal hCoV-19/Portugal/PT0287/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- G5425T G11083T C14805T T17247C G26144T AGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29716-

EPI_ISL_454416 MT510999
 2020-03-09 2020-05-23
 Netherlands SARS-CoV-2/human/NLD/Leiden-0002/2020
 ATTAAAGGTTTAT1- C241T C3037T C14408T A23403G C23606Y

EPI_ISL_454439
 2020-03-09 2020-05-28
 Sweden hCoV-19/Sweden/20-08044/2020
 C241T C3037T C14408T A23403G A26530G

EPI_ISL_454440
 2020-03-09 2020-05-28
 Sweden hCoV-19/Sweden/20-08124/2020
 C241T G779A C1059T C3037T C14408T A23403G G25563T

EPI_ISL_454441
 2020-03-09 2020-05-28
 Sweden hCoV-19/Sweden/20-08125/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_454442
 2020-03-09 2020-05-28
 Sweden hCoV-19/Sweden/20-08126/2020
 C241T C1059T C3037T C14408T G20419T A23403G G25563T

EPI_ISL_454479
 2020-03-09 2020-05-28
 Sweden hCoV-19/Sweden/20-08108/2020
 C241T C3037T C6402T C14408T T23287C A23403G GGG28881AAC

EPI_ISL_454480
 2020-03-09 2020-05-28
 Sweden hCoV-19/Sweden/20-08109/2020
 C241T C3037T C14408T C19488T A23403G GGG28881AAC

EPI_ISL_454481
 2020-03-09 2020-05-28
 Sweden hCoV-19/Sweden/20-08110/2020
 C241T C6402T C14408T T23287C A23403G GGG28881AAC

EPI_ISL_454482
 2020-03-09 2020-05-28
 Sweden hCoV-19/Sweden/20-08111/2020
 C241T C3037T C14408T A23403G C23683T GGG28881AAC

EPI_ISL_454483
 2020-03-09 2020-05-28
 Sweden hCoV-19/Sweden/20-08112/2020
 C241T C3037T C14408T A23403G C23683T GGG28881AAC

EPI_ISL_454484
 2020-03-09 2020-05-28
 Sweden hCoV-19/Sweden/20-08113/2020
 C241T C3037T C14408T G22583A A23403G

EPI_ISL_454486
 2020-03-09 2020-05-28
 Sweden hCoV-19/Sweden/20-08115/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_454487
 2020-03-09 2020-05-28
 Sweden hCoV-19/Sweden/20-08116/2020
 C241T C3037T C14408T A23403G

EPI_ISL_454488
 2020-03-09 2020-05-28
 Sweden hCoV-19/Sweden/20-08118/2020
 C241T C3037T C14408T G22583A A23403G

EPI_ISL_454489
 2020-03-09 2020-05-28
 Sweden hCoV-19/Sweden/20-08119/2020
 C241T C3037T C14408T G22583A A23403G

EPI_ISL_454490
 2020-03-09 2020-05-28
 Sweden hCoV-19/Sweden/20-08120/2020
 C241T C3037T C4878T C14408T G18780T G22583A A23403G

EPI_ISL_454491
 2020-03-09 2020-05-28
 Sweden hCoV-19/Sweden/20-08121/2020
 C241T C3037T C14408T G22583A A23403G

EPI_ISL_454492
 2020-03-09 2020-05-28
 Sweden hCoV-19/Sweden/20-08122/2020
 C241T C3037T C14408T G22583A A23403G

EPI_ISL_454493
 2020-03-09 2020-05-28
 Sweden hCoV-19/Sweden/20-08123/2020
 C241T C2141T C3037T C3373A C5654T C14408T A23403G C24034T GGG28881AAC

EPI_ISL_454496
 2020-03-09 2020-05-28
 Sweden hCoV-19/Sweden/20-08054/2020
 C241T C3037T C14408T A23403G G27163T G28329T

EPI_ISL_454595
 2020-03-09 2020-05-28
 Croatia hCoV-19/Croatia/361_Pula/2020
 ATTAA1- C241T C3037T C3373M CCT5548MMY A5552W TT6619WW G6865T C14408T T20147C A23403G G25593C TGTTG28238YKC T28245G T28251CTG CA28253TC GGG28881AAC TTC29309GAA AGA29314CCC CAAGT29318YRMKW ATT29324WYW T29328K TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_454690 MW008579
 2020-03-09 2020-05-28
 United States SARS-CoV-2/human/USA/GA-EHC-083E/2020
 ATTAAA1- C241T C3037T C14408T A23403G G25563T GTTCTA28090- AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_455328
 2020-03-09 2020-05-29
 Spain hCoV-19/Spain/Galicia201792/2020
 A1- A27C C8782T G8927A AG8938GA T9477A C14805T A21174G G25537T G25979T T28144C C28657T C28863T C29718T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_455329
 2020-03-09 2020-05-29
 Spain hCoV-19/Spain/Galicia201793/2020
 A1- A27C A8527G T8671A C8782T T9477A C14805T G25537T G25979T T28144C C28657T C28863T C29718T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_455330
 2020-03-09 2020-05-29
 Spain hCoV-19/Spain/Galicia201796/2020
 A1- C8782T T9477A C14805T A19705C T21368A G25537T G25979T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_455714
 2020-03-09 2020-06-01
 Vietnam hCoV-19/Vietnam/VNHN_301/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_455715
 2020-03-09 2020-06-01
 Vietnam hCoV-19/Vietnam/VNHN_302/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T GT5513A C14408T A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_455847
 2020-03-09 2020-06-01
 Sweden hCoV-19/Sweden/20-08117/2020
 C241T C3037T C14408T A23403G

EPI_ISL_455902
 2020-03-09 2020-06-01
 Sweden hCoV-19/Sweden/20-08127/2020
 G1440A T1778C G2891A C7011T C7299T T24514C G25593C

EPI_ISL_455905
 2020-03-09 2020-06-01
 Sweden hCoV-19/Sweden/20-50272/2020
 C241T C3037T C14408T A23403G C23575T G23587C

EPI_ISL_455909
 2020-03-09 2020-06-01
 Thailand hCoV-19/Thailand/Bangkok-CONI-0106/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- A895G C2942T G4390T C8782T C9598T G20134T G24047A T28144C

EPI_ISL_460311 MT520386
 2020-03-09 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00003/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C2416T C3037T C5284T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_461003
 2020-03-09 2020-06-06
 Netherlands hCoV-19/Netherlands/Limburg_15/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A C4655T G8422A G19648T C22323T C29546A GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461104
 2020-03-09 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_669/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- C17410T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461105
 2020-03-09 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_670/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T T17247C G26144T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461106
 2020-03-09 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_671/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- C17410T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_462328
 2020-03-09 2020-06-08
 Singapore hCoV-19/Singapore/210/2020
 AAAAAAAAAAAA29892-

EPI_ISL_464755
 2020-03-09 2020-06-11
 United Kingdom hCoV-19/England/201141471/2020
 C241T C3037T C14408T G20213R A23403G

EPI_ISL_464767
 2020-03-09 2020-06-11
 United Kingdom hCoV-19/England/201141596/2020
 T514C ATG1605- C22591T

EPI_ISL_464806
 2020-03-09 2020-06-11
 United Kingdom hCoV-19/England/201160910/2020
 C241T C3037T C6968T C14408T A23403G GGG28881AAC

EPI_ISL_464807
 2020-03-09 2020-06-11
 United Kingdom hCoV-19/England/201160912/2020
 G11083T C14805T T17247C C22444T G25784C G26144T

EPI_ISL_464808
 2020-03-09 2020-06-11
 United Kingdom hCoV-19/England/201160953/2020
 G1440A G2891R A27669G

EPI_ISL_466943 LR824058
 2020-03-09 2020-06-12
 Switzerland 100019
 C241T C3037T C14408T A19298W A19356W T19516Y C19522Y A22453R A23403G GGG28881AAC

EPI_ISL_466950 LR824047
 2020-03-09 2020-06-12
 Switzerland 100026
 C241Y C3037Y G11083K C12400Y C14408Y C14805Y T17247Y G22454R C22506S A23403R G26144K

EPI_ISL_469074
 2020-03-09 2020-06-17
 Sweden hCoV-19/Sweden/20-08134/2020
 C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC

EPI_ISL_469143
 2020-03-09 2020-06-17
 Singapore hCoV-19/Singapore/394/2020
 AAAAAAAAAAAA29892-

EPI_ISL_470882
 2020-03-09 2020-06-19
 Norway hCoV-19/Norway/1949/2020
 ATTA1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_471528
 2020-03-09 2020-06-22
 Czech Republic hCoV-19/Czech Republic/NRL_1751/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475550
 2020-03-09 2020-06-23
 Sweden hCoV-19/Sweden/20-08056/2020
 G1397A A7970G G14653A C18788T T28688C G29742T

EPI_ISL_475558
 2020-03-09 2020-06-23
 Sweden hCoV-19/Sweden/20-50204/2020
 C14805T T17247C G26144T

EPI_ISL_475559
 2020-03-09 2020-06-23
 Sweden hCoV-19/Sweden/20-50210/2020
 C884T G1397A TTG3333- C4455T C6070T C8480T G8653T G11083- T28688C G29742T

EPI_ISL_475837
 2020-03-09 2020-06-25
 Austria hCoV-19/Austria/CeMM0402/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2000C C3037T C14408T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475844
 2020-03-09 2020-06-25
 Austria hCoV-19/Austria/CeMM0414/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T19839C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479843
 2020-03-09 2020-07-01
 Japan hCoV-19/Japan/PG-0100/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C11752T C19170A ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_479844
 2020-03-09 2020-07-01
 Japan hCoV-19/Japan/PG-0104/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C5093T C11752T C19170A TTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29822-

EPI_ISL_479845
 2020-03-09 2020-07-01
 Japan hCoV-19/Japan/PG-0106/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C11752T C19170A ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_479846
 2020-03-09 2020-07-01
 Japan hCoV-19/Japan/PG-0108/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C11752T C19170A ATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29819-

EPI_ISL_479920
 2020-03-09 2020-07-01
 Japan hCoV-19/Japan/PG-0221/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C140T A2160G T4402C G5062T C8782T T28144C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_479921
 2020-03-09 2020-07-01
 Japan hCoV-19/Japan/PG-0222/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- A2160G T4402C G5062T C8782T T28144C ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_479928
 2020-03-09 2020-07-01
 Japan hCoV-19/Japan/PG-0233/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C3037T C14408T C15324T A23403G AAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29813-

EPI_ISL_479929
 2020-03-09 2020-07-01
 Japan hCoV-19/Japan/PG-0234/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C3037T C14408T C15324T A23403G AAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29813-

EPI_ISL_479930
 2020-03-09 2020-07-01
 Japan hCoV-19/Japan/PG-0235/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C3037T C14408T C15324T A23403G TGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29840-

EPI_ISL_482451
 2020-03-09 2020-07-03
 United States hCoV-19/USA/OR-PROV-216/2020
 A4236G G11083T C14805T T25655C G26144T

EPI_ISL_482988
 2020-03-09 2020-07-06
 United States hCoV-19/USA/MN-MDH-1267/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C8782T C17010T C17747T A17858G C18060T T28144C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_486646
 2020-03-09 2020-07-10
 Italy hCoV-19/Italy/HSacco-2/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_488349
 2020-03-09 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F750/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G24077T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488748
 2020-03-09 2020-07-14
 United Kingdom hCoV-19/England/NORT-28125A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC G29081R G29540T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488756
 2020-03-09 2020-07-14
 United Kingdom hCoV-19/England/NORT-2812A5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G C9223T G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488807
 2020-03-09 2020-07-14
 United Kingdom hCoV-19/England/NORT-28124B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC G29540T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489839
 2020-03-09 2020-07-14
 Peru hCoV-19/Peru/Peru008/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAA1- C241T C3037T C14408T A20268G A23403G ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_489989
 2020-03-09 2020-07-14
 Peru hCoV-19/Peru/INS-012/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAA1- C241T C3037T C14408T A16216G A20268G A23403G ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_497769
 2020-03-09 2020-07-25
 China hCoV-19/Hong Kong/HKU-200723-002/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1595A A3790G A8121G C9962T G11083T C11704T T13929C C14724T T21584G G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498004
 2020-03-09 2020-07-26
 South Korea hCoV-19/Korea/KCDC2103/2020
 T4402C G5062T C8782T G17814T T28144C

EPI_ISL_498005
 2020-03-09 2020-07-26
 South Korea hCoV-19/Korea/KCDC2104/2020
 ATTAAAG1- T4402C G5062T C8782T G17814T T28144C AAAAAAAAAAAAA29891-

EPI_ISL_500042
 2020-03-09 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A47AF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1514T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_500048
 2020-03-09 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A4833/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A2480G C2558T A9634W G11083T C14805T G26144T C29870A

EPI_ISL_500402
 2020-03-09 2020-07-28
 Spain hCoV-19/Spain/COV005968/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C583T C8782T T9477A C14805T G25979T C26527T T28144C C28603Y C28657T C28863T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_500626
 2020-03-09 2020-07-29
 Australia hCoV-19/Australia/NSW2137/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17747T A17858G C18060T A24694T T28144C CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500632
 2020-03-09 2020-07-29
 Australia hCoV-19/Australia/NSW2154/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500633
 2020-03-09 2020-07-29
 Australia hCoV-19/Australia/NSW2155/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1397A C2113T G11083T C18928T T28688C G29374A G29742T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_506957
 2020-03-09 2020-08-02
 South Korea hCoV-19/Korea/KCDC2163/2020
 ATTAAAG1- T4402C G5062T C8782T G17814T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_506958
 2020-03-09 2020-08-02
 South Korea hCoV-19/Korea/KCDC2164/2020
 ATTAAAG1- T4402C G5062T C8782T G17814T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_506959
 2020-03-09 2020-08-02
 South Korea hCoV-19/Korea/KCDC2165/2020
 ATTAAAGGTTT1- T4402C G5062T C7528T C8782T G17814T T28144C AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_506960
 2020-03-09 2020-08-02
 South Korea hCoV-19/Korea/KCDC2166/2020
 ATTAAAG1- T4402C G5062T C8782T G17814T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_506961
 2020-03-09 2020-08-02
 South Korea hCoV-19/Korea/KCDC2167/2020
 ATTAAAGG1- G124A T4402C G5062T T8168A C8782T G17814T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_506962
 2020-03-09 2020-08-02
 South Korea hCoV-19/Korea/KCDC2168/2020
 ATTAAAG1- T4402C G5062T C8782T G17814T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_506963
 2020-03-09 2020-08-02
 South Korea hCoV-19/Korea/KCDC2169/2020
 ATTAAAGGTTT1- T4402C G5062T C8782T G17814T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_506964
 2020-03-09 2020-08-02
 South Korea hCoV-19/Korea/KCDC2170/2020
 ATTAAAGG1- T4402C G5062T C8782T G17814T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_507010 MT820461
 2020-03-09 2020-07-30
 Saudi Arabia SARS-CoV-2/human/SAU/KAIMRC01/2020
 ATTAAAGGTTTATACC1- C6312A G11083T C13730T C23929T A25615G C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_508937
 2020-03-09 2020-08-04
 France hCoV-19/France/ARA06923/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T A11935C C14408T C15324T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_508938
 2020-03-09 2020-08-04
 France hCoV-19/France/ARA07055/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTT1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_508939
 2020-03-09 2020-08-04
 France hCoV-19/France/ARA07148/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTG1- C241T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_508940
 2020-03-09 2020-08-04
 France hCoV-19/France/ARA07169/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C14408T G16852T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_510166
 2020-03-09 2020-08-06
 Spain hCoV-19/Spain/Madrid/COV005280/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241Y C3037Y C8782Y C13115Y C13356Y C13665Y C14408Y A20268R A23403R T25541Y C26088Y T28144Y CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_510817
 2020-03-09 2020-08-07
 Sweden hCoV-19/Sweden/20-50310/2020
 C241T C3037T C14408T C20031A C20320T A23403G T25674C C27046T GGG28881AAC

EPI_ISL_512653
 2020-03-09 2020-08-11
 Costa Rica hCoV-19/Costa Rica/INC-0047/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- C241T C3037T C6696T C10702T C14408T A20268G A23403G C26461T -29812A GTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29828-

EPI_ISL_516080 MT483876
 2020-03-09 2020-05-18
 Italy SARS-CoV-2/human/ITA/34104/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C3037T G4255T T6640C C14408T A23403G A26057G A26530G GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_516081 MT483877
 2020-03-09 2020-05-18
 Italy SARS-CoV-2/human/ITA/34117/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C3037T C12115T C14408T A23403G A26530G GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_522349
 2020-03-09 2020-08-25
 Belgium hCoV-19/Belgium/rega-0309752/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C3037T T11654C C14408T G17427T A23403G G23873A T28144C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_523932
 2020-03-09 2020-08-27
 Germany hCoV-19/Germany/NW-61/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525591
 2020-03-09 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-12211-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T T595A C1059T C3037T C12534T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_525611
 2020-03-09 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-14419-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- T490A C3177T C7869T C8782T C11941T T18736C C24034T T26729C G28077C T28144C A29700G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_525612
 2020-03-09 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-14422-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C11916T C14408T A23403G G25563T G28376T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_527956
 2020-03-09 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42181461/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T C17285T A23403G TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_534790
 2020-03-09 2020-09-14
 United Kingdom hCoV-19/England/OXON-B2A78/2020
 G11083T C14805T G26031T G26144T G28842T AAAAAAAAAA29894-

EPI_ISL_538268 MW010249
 2020-03-09 2020-09-16
 United States SARS-CoV-2/human/USA/MD-MDH-0184/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C14408T C18877T A23403G G25563T T29867A C29870A

EPI_ISL_539114
 2020-03-09 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8CC8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18606T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539208
 2020-03-09 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8572/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A11438R C14408T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539518
 2020-03-09 2020-09-18
 Spain hCoV-19/Spain/AR-ISCIII-201849/2020
 G11083T G26144T C29801A

EPI_ISL_539519
 2020-03-09 2020-09-18
 Spain hCoV-19/Spain/AR-ISCIII-201850/2020
 A8686T G11083T G26144T

EPI_ISL_539555
 2020-03-09 2020-09-18
 Spain hCoV-19/Spain/CT-ISCIII-209818/2020
 C241T C3037T C11514T A12765G C14408T A20268G A23403G T25779A C27247T ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_539561
 2020-03-09 2020-09-18
 Spain hCoV-19/Spain/EX-ISCIII-201899/2020
 C241T C3037T C14408T A20268G A23403G

EPI_ISL_539563
 2020-03-09 2020-09-18
 Spain hCoV-19/Spain/GA-ISCIII-201794/2020
 A6T GGCTATTGATGGTGGTGTCACTCGTGACATAGCATCTACAGATAC8695- CCAGCGTGGTGGTAGTTATACTAATGACAAAGCTTGCCCATTGATTGCTGCAGTCATAACAAGAGAAGTGGGTTTTGTCGTGCCTGGTTTGCCTGGCACGATATTACGCACAACTAATGGTGACTTTTTGCATTTCTTACCTAGAGTTTTTAGTGCAGTTGGTAACATCTGT8782- T9477A C14805T G25537T G25979T T28144C C28657T C28863T TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_539569
 2020-03-09 2020-09-18
 Spain hCoV-19/Spain/NA-ISCIII-201944/2020
 A3778G T9477A C14805T T28144C C28657T C28863T A29004T

EPI_ISL_539570
 2020-03-09 2020-09-18
 Spain hCoV-19/Spain/NA-ISCIII-201945/2020
 C8782T T9477A C14805T C17304T G25979T T28144C C28657T C28863T

EPI_ISL_539571
 2020-03-09 2020-09-18
 Spain hCoV-19/Spain/NA-ISCIII-201951/2020
 ATTAAAGG1- C8782T T9477A C14805T C21077T G25979T T28144C C28657T C28863T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_539572
 2020-03-09 2020-09-18
 Spain hCoV-19/Spain/NA-ISCIII-201952/2020
 A8256G C8281T C8320A T9477A A10988G C14805T C21575T T25705A G25979T T28144C C28657T C28863T

EPI_ISL_547514
 2020-03-09 2020-09-24
 Netherlands hCoV-19/Netherlands/UT-RIVM-10046/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C280T T514C C583T T1606C C18647T G21776T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547527
 2020-03-09 2020-09-24
 Netherlands hCoV-19/Netherlands/UT-RIVM-10090/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C T1606C G4255T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547528
 2020-03-09 2020-09-24
 Netherlands hCoV-19/Netherlands/UT-RIVM-10091/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_548367
 2020-03-09 2020-09-26
 United States hCoV-19/USA/CA-CZB-3635/2020
 ATTAAAG1- G8S T10W C241T C3037T C14408T C15720Y C18877T A23403G G25563T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

MT292569
 2020-03-09 2020-04-05
 Spain SARS-CoV-2/human/ESP/Valencia13/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT292571
 2020-03-09 2020-04-05
 Spain SARS-CoV-2/human/ESP/Valencia12/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT292573
 2020-03-09 2020-04-05
 Spain SARS-CoV-2/human/ESP/Valencia14/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T9477A C14805T G24928T G25979T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT320891
 2020-03-09 2020-04-10
 Iran SARS-CoV-2/human/IRN/HGRC-1.1-IPI-8206/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTC1- G1397A G11083T C18377T G29374A G29742T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

MT325561
 2020-03-09 2020-04-10
 United States SARS-CoV-2/human/USA/AZ_8132/2020
 C8782T A16628G C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

MT325562
 2020-03-09 2020-04-10
 United States SARS-CoV-2/human/USA/AZ_8135/2020
 C8782T C17747T A17858G C18060T G18197R T28144C AAAAAAAAAAAAAAAAAAAAA29883-

MT325579
 2020-03-09 2020-04-10
 United States SARS-CoV-2/human/USA/IN_2001/2020
 C241T C3037T C14408T GG18505RK A23403G AAAAAAAAAAAAAAAAAAAAA29883-

MT325581
 2020-03-09 2020-04-10
 United States SARS-CoV-2/human/USA/LA_0842/2020
 C241T C1059T C3037T C10319T A14012T C14408T C17894T A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAAAA29883-

MT325597
 2020-03-09 2020-04-10
 United States SARS-CoV-2/human/USA/NV_0052/2020
 A2480G C2558T A4912C G11083T C14805T C17010A C21575T G26144T A27151R AAAAAAAAAAAAAAAAAAAAA29883-

MT325603
 2020-03-09 2020-04-10
 United States SARS-CoV-2/human/USA/PA_4395/2020
 C241T C3037T C14408T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MT459849
 2020-03-09 2020-05-11
 Greece SARS-CoV-2/human/GRC/133_31929/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C6312G C14408T C18877T A23403G G25563T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

MT459863
 2020-03-09 2020-05-11
 Greece SARS-CoV-2/human/GRC/148_31943/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

MT956917
 2020-03-09 2020-09-03
 Spain SARS-CoV-2/human/ESP/HUD-79876568/2020
 C241T C3037T C14408T A23403G

EPI_ISL_415461
 2020-03-10 2020-03-17
 Netherlands hCoV-19/Netherlands/Gelderland_1-2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C8782T G16381A T28144C G28878A G29742A GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415465 LR878344
 2020-03-10 2020-03-17
 Netherlands hCoV-19/Netherlands/NA_1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C1059T C3037T C14408T A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415467 LR878218
 2020-03-10 2020-03-17
 Netherlands hCoV-19/Netherlands/NA_11/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T C10741T C14408T A23403G C27046T C28344A GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415468 LR878083
 2020-03-10 2020-03-17
 Netherlands hCoV-19/Netherlands/NA_12/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T C14408T C22277A A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415469 LR878080
 2020-03-10 2020-03-17
 Netherlands hCoV-19/Netherlands/NA_13/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C1059T C3037T C14408T A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415476 LR878351
 2020-03-10 2020-03-17
 Netherlands hCoV-19/Netherlands/NA_2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T C14408T C18029T A23403G GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415492 LR878097
 2020-03-10 2020-03-17
 Netherlands hCoV-19/Netherlands/NA_35/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- T1570C G11083T C14408T C14805T T17247C T21462C G26144T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415495 LR878345
 2020-03-10 2020-03-17
 Netherlands hCoV-19/Netherlands/NA_6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- G1440A G2891A G16075T G29383T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415500 LR878347
 2020-03-10 2020-03-17
 Netherlands hCoV-19/Netherlands/NoordBrabant_42/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- T514C ATG1605- C17410T G27754T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415526 LR878334
 2020-03-10 2020-03-17
 Netherlands hCoV-19/Netherlands/Utrecht_17/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C8782T G16381A T28144C G28878A G29742A GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415591 MT252791
 2020-03-10 2020-03-18
 United States SARS-CoV-2/human/USA/WA-UW63/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C8782T C17747T A17858G C18060T T28144C AAAA29900-

EPI_ISL_415594 MT252796
 2020-03-10 2020-03-18
 United States SARS-CoV-2/human/USA/WA-UW66/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- T5860C C8782T C17747T A17858G C18060T T18099A T28144C

EPI_ISL_415597 MT252794
 2020-03-10 2020-03-18
 United States SARS-CoV-2/human/USA/WA-UW69/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T C14408T A23403G G25563T G29553A A29903-

EPI_ISL_415598 MT252798
 2020-03-10 2020-03-18
 United States SARS-CoV-2/human/USA/WA-UW70/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCT1- C8782T C17747T A17858G C18060T T28144C

EPI_ISL_415601 MT252792
 2020-03-10 2020-03-18
 United States SARS-CoV-2/human/USA/WA-UW73/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCT1- C241T T3011C C3037T C14408T A23403G

EPI_ISL_415602 MT252795
 2020-03-10 2020-03-18
 United States SARS-CoV-2/human/USA/WA-UW74/2020
 ATTAAAGGTTTATA1- CCCAGG19- CAAACCAACCAA28T C832T C8782T C17747T A17858G C18060T T28144C GAA29864TCT GA29868CT A29903-

EPI_ISL_415603 MT252797
 2020-03-10 2020-03-18
 United States SARS-CoV-2/human/USA/WA-UW75/2020
 ATTAAAG1- AACC34HWYH C8782T C17747T A17858G C18060T A24877G T28144C -29904ANANANA

EPI_ISL_415604 MT252800
 2020-03-10 2020-03-18
 United States SARS-CoV-2/human/USA/WA-UW76/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C8782T C17747T A17858G C18060T C23758T T28144C -29904ANAAANA

EPI_ISL_415626 MT252819
 2020-03-10 2020-03-18
 United States SARS-CoV-2/human/USA/WA-UW61/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAAC19- C37T GTT669- C8782T G17158A C17747T A17858G C18060T T28144C -29904AAAAA

EPI_ISL_415631
 2020-03-10 2020-03-18
 United Kingdom hCoV-19/Scotland/CVR10/2020
 A1515G G11083T C14805T T17247C A21625G G26144T

EPI_ISL_415642
 2020-03-10 2020-03-18
 Georgia hCoV-19/Georgia/Tb-477/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGA1- C241T C3037T C14408T A23403G ATGA29866GCTG AA29871CT A29874T AAA29876TGG AAAAAAAAAAAAAAAAAAAAAAA29881G

EPI_ISL_415643
 2020-03-10 2020-03-18
 Georgia hCoV-19/Georgia/Tb-468/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGA1- A915G C10319T G11083T G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_415787 MT263074
 2020-03-10 2020-03-30
 Peru SARS-CoV-2/human/PER/Peru-10/2020
 ATTAAAGGT1- C241T C3037T A8945G C14408T A23403G T24022C GGG28881AAC ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_416433 MT252677
 2020-03-10 2020-03-21
 United States SARS-CoV-2/human/USA/WA-UW77/2020
 ATTAAAGGTTTATACCTT1- AACC34HTTH C8782T C17747T A17858G C18060T T28144C -29904ANANANANA

EPI_ISL_416434 MT252678
 2020-03-10 2020-03-21
 United States SARS-CoV-2/human/USA/WA-UW78/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T C3037T C14408T T16419C A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_416435 MT252679
 2020-03-10 2020-03-21
 United States SARS-CoV-2/human/USA/WA-UW79/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAAC19- C37T C1929T C5784T C8782T C17747T A17858G C18060T G26730A T28144C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_416436 MT252680
 2020-03-10 2020-03-21
 United States SARS-CoV-2/human/USA/WA-UW80/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCT1- G2782T T5860C C8782T C17747T A17858G C18060T G26063T T28144C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_416437 MT252681
 2020-03-10 2020-03-21
 United States SARS-CoV-2/human/USA/WA-UW81/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACG1- C4084T C8782T C17747T A17858G C18060T T28144C A29869G AAAAAAA29897-

EPI_ISL_416438 MT252682
 2020-03-10 2020-03-21
 United States SARS-CoV-2/human/USA/WA-UW82/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAA29892-

EPI_ISL_416439
 2020-03-10 2020-03-21
 United States hCoV-19/USA/WA-UW83/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C832T C8782T A13901G C17747T A17858G C18060T C27945T T28144C A29869T -29904ANANANANAAA

EPI_ISL_416440 MT252683
 2020-03-10 2020-03-21
 United States SARS-CoV-2/human/USA/WA-UW84/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCA1- T150C T153G C8782T C17747T A17858G C18060T T28144C AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_416441 MT252684
 2020-03-10 2020-03-21
 United States SARS-CoV-2/human/USA/WA-UW85/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGA1- C8782T C17747T A17858G C18060T A18121G C27741T T28144C T29410C AAAAAAAA29896-

EPI_ISL_416442 MT252685
 2020-03-10 2020-03-21
 United States SARS-CoV-2/human/USA/WA-UW86/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAAC1- C8782T C17747T A17858G C18060T T28144C AAAAAA29898-

EPI_ISL_416443 MT252686
 2020-03-10 2020-03-21
 United States SARS-CoV-2/human/USA/WA-UW87/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAAT1- A6693G C8782T C17747T A17858G C18060T T28144C A29869H

EPI_ISL_416444 MT252687
 2020-03-10 2020-03-21
 United States SARS-CoV-2/human/USA/WA-UW88/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- G354A C4755T C8782T C17747T A17858G C18060T T28144C TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_416445 MT252688
 2020-03-10 2020-03-21
 United States SARS-CoV-2/human/USA/WA-UW89/2020
 A55C C8782T C17747T A17858G C18060T T28144C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_416446 MT252689
 2020-03-10 2020-03-21
 United States SARS-CoV-2/human/USA/WA-UW90/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCT1- ATG518- C8782T C17747T A17858G C18060T T28144C AAAAAA29898-

EPI_ISL_416447 MT252690
 2020-03-10 2020-03-21
 United States SARS-CoV-2/human/USA/WA-UW91/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCT1- C8782T C17747T A17858G C18060T C21646T G22988A T28144C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_416451 MT252694
 2020-03-10 2020-03-21
 United States SARS-CoV-2/human/USA/WA-UW95/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCT1- C8782T C17747T A17858G C18060T T28144C C29733T A29876C AAAAAAAA29896-

EPI_ISL_416452 MT252695
 2020-03-10 2020-03-21
 United States SARS-CoV-2/human/USA/WA-UW96/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAA1- C241T C1059T C3037T C14408T A23403G G25563T C27005T G29553A AAAAAAAAAA29894-

EPI_ISL_416495
 2020-03-10 2020-03-22
 France hCoV-19/France/HF2234/2020
 C241T C1059T C3037T C14408T A18682G A23403G G25563T C29739T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_416496
 2020-03-10 2020-03-22
 France hCoV-19/France/HF2237/2020
 C241T C1059T C3037T C14408T A23403G G25563T A26459G G27490T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_416497
 2020-03-10 2020-03-22
 France hCoV-19/France/HF2239/2020
 A4T C241T C2416T C3037T T12722C C14408T A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_416521
 2020-03-10 2020-03-22
 Saudi Arabia hCoV-19/SaudiArabia/SCDC-3321/2020
 TTA2C TT9CCAAACTGTCAC C241T C3037T C14408T C18877T A23403G G25563T C26735T AAAAAAAAAAAA29892-

EPI_ISL_416522
 2020-03-10 2020-03-22
 Saudi Arabia hCoV-19/SaudiArabia/SCDC-3324/2020
 TTA2C TT9CCAAACTGTCAC C241T C3037T C14408T C18877T A23403G G25563T C26735T AAAAAAAAAAAA29892-

EPI_ISL_416650 MT252776
 2020-03-10 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW112/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C556T C6310T C8782T C17747T A17858G C18060T G27327T T28144C G28300T -29904ANANANANANANA

EPI_ISL_416660 MT252786
 2020-03-10 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW122/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_416672
 2020-03-10 2020-03-23
 United States hCoV-19/USA/WA-UW134/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T C1059T C3037T C14408T -19713TTACACAAAAGTTGATGGTGTTGATGTAGAATTGTTTGAAAATAAAACAACATTACCTGTTAATGTAGCATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_416745
 2020-03-10 2020-03-23
 France hCoV-19/France/Pollionay_1733/2020
 C241T C3037T C14408T C15324T A15860G G19872T A23403G C25416T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_417191 MT911534
 2020-03-10 2020-03-24
 United States SARS-CoV-2/human/USA/MN5-MDH5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T20833C A23403G GGG28881AAC AT29697GA A29700G AGA29714GAG -29744GA -29776A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417392
 2020-03-10 2020-03-25
 Australia hCoV-19/Australia/NSW31/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1397A C2113T -11075TTT G11083T C18928T T28688C G29374A G29742T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417394
 2020-03-10 2020-03-25
 Australia hCoV-19/Australia/NSW36/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- G1820A A2480G C2558T T8599C G11083T C14805T G26144T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_417395
 2020-03-10 2020-03-25
 Australia hCoV-19/Australia/NSW37/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C8782T C17747T A17858G C18060T A24694T T28144C CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_417396
 2020-03-10 2020-03-25
 Australia hCoV-19/Australia/NSW38/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C6312A G11083T C13730T C23929T A25615G C28311T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_417399
 2020-03-10 2020-03-25
 Australia hCoV-19/Australia/NSW41/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C2558T G11083T C14805T G26144T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_417400
 2020-03-10 2020-03-25
 Australia hCoV-19/Australia/NSW44/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C6312A G11083T C13730T C23929T C28311T C29614T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_417457 MT582488
 2020-03-10 2020-03-26
 Germany SARS-CoV-2/human/DEU/NRW-12/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_417521 MT374104
 2020-03-10 2020-03-27
 Taiwan SARS-CoV-2/human/TWN/CGMH-CGU-08/2020
 C1059T G1397A G11083T C23934T T28648C T28688C G29742T

EPI_ISL_417682
 2020-03-10 2020-03-27
 Iceland hCoV-19/Iceland/101/2020
 C241T C1059T C1302T C2939T C3037T T11191G C14408T A23403G G25563T

EPI_ISL_417698
 2020-03-10 2020-03-27
 Iceland hCoV-19/Iceland/103/2020
 C241T C3037T C14408T A23403G G24077T

EPI_ISL_417730
 2020-03-10 2020-03-27
 Iceland hCoV-19/Iceland/93/2020
 C241T C3037T C14408T A23403G

EPI_ISL_417732
 2020-03-10 2020-03-27
 Iceland hCoV-19/Iceland/94/2020
 A1515G C9223T G11083T C14805T T17247C A17799G G26144T G29321T

EPI_ISL_417761
 2020-03-10 2020-03-27
 Iceland hCoV-19/Iceland/84/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_417777
 2020-03-10 2020-03-27
 Iceland hCoV-19/Iceland/102/2020
 C241T C799T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_417872
 2020-03-10 2020-03-27
 Iceland hCoV-19/Iceland/90/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_417873
 2020-03-10 2020-03-27
 Iceland hCoV-19/Iceland/91/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27532T

EPI_ISL_417876
 2020-03-10 2020-03-27
 Iceland hCoV-19/Iceland/97/2020
 C241T C3037T C14408T A23403G C24054T A25958G C27046T GGG28881AAC

EPI_ISL_417958 MT334529
 2020-03-10 2020-03-27
 United States SARS-CoV-2/human/USA/UT-00010/2020
 G1440A G2891A C7011T G29868V

EPI_ISL_418000
 2020-03-10 2020-03-28
 Portugal hCoV-19/Portugal/PT0015/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- ATG1605- G5332T C20270T C20703T A29683T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_418001
 2020-03-10 2020-03-28
 Portugal hCoV-19/Portugal/PT0016/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3373A C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_418003
 2020-03-10 2020-03-28
 Portugal hCoV-19/Portugal/PT0018/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_418016
 2020-03-10 2020-03-28
 Portugal hCoV-19/Portugal/PT0031/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G C25791T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_418210
 2020-03-10 2020-03-29
 Senegal hCoV-19/Senegal/073/2020
 C241T C3037T C14408T A23403G G27261T

EPI_ISL_418333
 2020-03-10 2020-03-10
 Canada hCoV-19/Canada/ON_PHL3501/2020
 A1- T8767C C8782T T10771C C17733T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418362
 2020-03-10 2020-03-10
 Canada hCoV-19/Canada/ON_PHL3536/2020
 A1- C241T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418365
 2020-03-10 2020-03-10
 Canada hCoV-19/Canada/ON_PHL0977/2020
 A1- C241T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418369
 2020-03-10 2020-03-10
 Canada hCoV-19/Canada/ON_PHL8539/2020
 A1- C241T C3037T C3373A C9733T C14408T A23403G GGG28881AAC A29877G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418582
 2020-03-10 2020-03-30
 Ireland hCoV-19/Ireland/22901/2020
 A2480G C2558T G11083T C14805T G26144T

EPI_ISL_418583
 2020-03-10 2020-03-30
 Ireland hCoV-19/Ireland/24042/2020
 G11083T C14805T T17247C G26144T

EPI_ISL_418584
 2020-03-10 2020-03-30
 Ireland hCoV-19/Ireland/24052/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_418676
 2020-03-10 2020-03-30
 United Kingdom hCoV-19/England/20122074602/2020
 G11083T C14805T G26144T C26533Y

EPI_ISL_418793
 2020-03-10 2020-03-31
 Belgium hCoV-19/Belgium/SS-031047/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C23393T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_418800
 2020-03-10 2020-03-31
 Belgium hCoV-19/Belgium/CS-031052/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A C2469T G2891A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_418821
 2020-03-10 2020-03-31
 Canada hCoV-19/Canada/BC_3968175/2020
 C8782T A17858G C18060T T28144C

EPI_ISL_418822
 2020-03-10 2020-03-31
 Canada hCoV-19/Canada/BC_3972884/2020
 C8782T A17858G C18060T T28144C

EPI_ISL_418825
 2020-03-10 2020-03-31
 Canada hCoV-19/Canada/BC_4118226/2020
 C8782T A17858G C18060T T28144C

EPI_ISL_418826
 2020-03-10 2020-03-31
 Canada hCoV-19/Canada/BC_4122951/2020
 C8782T A17858G C18060T T28144C G29736T

EPI_ISL_418829
 2020-03-10 2020-03-31
 Canada hCoV-19/Canada/BC_4540462/2020
 C8782T A17858G C18060T T28144C

EPI_ISL_418836
 2020-03-10 2020-03-31
 Canada hCoV-19/Canada/BC_6004567/2020
 C241T C3037T C12138T C14408T C18877T A23403G G25563T

EPI_ISL_418837
 2020-03-10 2020-03-31
 Canada hCoV-19/Canada/BC_6129127/2020
 C241T C3037T C14408T C18877T A23403G G25563T

EPI_ISL_418839
 2020-03-10 2020-03-31
 Canada hCoV-19/Canada/BC_6489864/2020
 A187G C241T C3037T C14408T A23403G G29810T

EPI_ISL_419263 MT322404
 2020-03-10 2020-04-08
 United States SARS-CoV-2/human/USA/VA-DCLS-0011/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C8782T C17747T A17858G C18060T T28144C C29870A

EPI_ISL_419297 LC547519
 2020-03-10 2020-04-02
 Japan hCoV-19/Japan/P2-1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACT1- C241T C3037T C14408T C18877T A23403G G25563T TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_419298 LC547520
 2020-03-10 2020-04-02
 Japan hCoV-19/Japan/P2-2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_419659
 2020-03-10 2020-04-03
 Austria hCoV-19/Austria/CeMM0006/2020
 C241T C3037T C14408T A20268G A23403G C27092T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_419661
 2020-03-10 2020-04-03
 Austria hCoV-19/Austria/CeMM0008/2020
 C241T C3037T C14408T A20268G G22349K A23403G C26958Y G29734C TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_419665
 2020-03-10 2020-04-03
 Austria hCoV-19/Austria/CeMM0012/2020
 C241T C1059T C3037T G10981K C14408T A23403G G25563T TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_419680
 2020-03-10 2020-04-03
 Spain hCoV-19/Spain/Valencia16/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_419681
 2020-03-10 2020-04-03
 Spain hCoV-19/Spain/Valencia17/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C29144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_419706 MT322405
 2020-03-10 2020-04-08
 United States SARS-CoV-2/human/USA/VA-DCLS-0012/2020
 AT1-C C241T C2416T C3037T C14408T A23403G G25563T C29870A

EPI_ISL_419712 MT322410
 2020-03-10 2020-04-08
 United States SARS-CoV-2/human/USA/VA-DCLS-0020/2020
 ATTAAAGGTTTA1- C241T C2416T C3037T C14408T A23403G G25563T C29870A

EPI_ISL_419744 MT450940
 2020-03-10 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC25/2020
 ATTAAAGGTTTATAC1- A1515G C9223T G11083T C14805T T17247C G21795A G26144T

EPI_ISL_419745 MT450941
 2020-03-10 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC26/2020
 AT1- G1440A G2891A C7011T

EPI_ISL_419746 MT450942
 2020-03-10 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC27/2020
 ATTA1- T490A T998G C3177T C8782T T18736C G19684T C24034T T26729C C27635T G28077C T28144C A29700G

EPI_ISL_419747 MT450943
 2020-03-10 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC28/2020
 ATTAAAGGTTTA1- T490A C3177T C8782T T18736C G19684T C24034T T26729C C27635T G28077C T28144C A29700G

EPI_ISL_419748 MT450944
 2020-03-10 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC29/2020
 A1- C241T C3037T T11638C C14408T A23403G T23797Y C28232Y GGG28881AAC C29708T

EPI_ISL_419749 MT450945
 2020-03-10 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC30/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C1076T G1397A G11083T G19788T T28688C G29742T

EPI_ISL_419750 MT450946
 2020-03-10 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC31/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_419751 MT450947
 2020-03-10 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC32/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- T490A C3177T C8782T T18736C G19684T C24034T T26729C C27635T G28077C T28144C A29700G

EPI_ISL_419752 MT450948
 2020-03-10 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC33/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- T490A C3177T C8782T T18736C G19684T C24034T T26729C C27635T G28077C T28144C A29700G

EPI_ISL_419753 MT450949
 2020-03-10 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC34/2020
 ATTAAAGG1- A1079C G1397A T7225C C9319T G11083T C19862T T27384C T28688C G29742T

EPI_ISL_419755 MT450950
 2020-03-10 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC35/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- T490A C3177T C8782T T18736C G19684T C24034T T26729C C27635T G28077C T28144C A29700G

EPI_ISL_419765 MT450951
 2020-03-10 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC36/2020
 ATTAAAGGTTTATACCTT1- G7128A G11083T C14805T T17247C G26144T

EPI_ISL_420108
 2020-03-10 2020-04-05
 Singapore hCoV-19/Singapore/31/2020
 ATTAAAGGTTTA1- TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_420141
 2020-03-10 2020-04-05
 Norway hCoV-19/Norway/1867/2020
 ATTAAA1- C241T C3037T C5547T C5730T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_420143
 2020-03-10 2020-04-05
 Norway hCoV-19/Norway/1917/2020
 ATTA1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_420147
 2020-03-10 2020-04-05
 Norway hCoV-19/Norway/1989/2020
 ATTAAAG1- C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_420313
 2020-03-10 2020-04-06
 Norway hCoV-19/Norway/1953/2020
 ATTAAAGGTTT1- C241T C3037T T3725G C14408T A23403G A26530G

EPI_ISL_421662
 2020-03-10 2020-04-09
 India hCoV-19/India/1073/2020
 ATTAAAGGTTTATAC1- C884T G1397A A3472G G8653T T9318A T9320A T9357A G11083T G27613T T28688C G29742T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_421663
 2020-03-10 2020-04-09
 India hCoV-19/India/1093/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C884T G1397A C2141A A3472G G8653T G11083T T25612G G25641C G27613T T28688C G29742T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_421664
 2020-03-10 2020-04-09
 India hCoV-19/India/1100/2020
 ATTAAAGGTTT1- C884T G1397A A3472G G8653T G11083T A16061G G27613T T28688C G29742T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_421665
 2020-03-10 2020-04-09
 India hCoV-19/India/1104/2020
 ATTAAAGGTTTAT1- C884T G1397A C2638T G8653T C9226T G11083T C13548T C17573T A25980C T28688C G29742T A29879G A29883T A29901T

EPI_ISL_421666
 2020-03-10 2020-04-09
 India hCoV-19/India/1111/2020
 ATTAAAGGTTTA1- C1267T G1397A A9514G G11083T T28688C G29742T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_421667
 2020-03-10 2020-04-09
 India hCoV-19/India/1115/2020
 ATTAAAG1- C884T G1397A A3472G G8653T G11083T G27613T T28688C G29742T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_421668
 2020-03-10 2020-04-09
 India hCoV-19/India/1125/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C583T G1397A TACTAT6853- C7011T C11074T G11083T C25904T C27213T C27999T T28688C G29742T A29891G

EPI_ISL_422641 LR878122
 2020-03-10 2020-04-11
 Netherlands hCoV-19/Netherlands/Gelderland_5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- C17410T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422661 LR878195
 2020-03-10 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_113/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- C10186T C17410T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422662 LR878201
 2020-03-10 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_114/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422834 LR878165
 2020-03-10 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_74/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T T17247C G26144T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422835 LR878155
 2020-03-10 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_75/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- C17410T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422839 LR878162
 2020-03-10 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_79/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C878A G11083T C14805T T17247C G26144T C26353T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422894 LR878117
 2020-03-10 2020-04-11
 Netherlands hCoV-19/Netherlands/NoordHolland_31/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- C17410T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_424352 GWHACEY01000001 MT281577
 2020-03-10 2020-04-04
 China SARS-CoV-2/Fuyang_FY002/human/2020/CHN
 T721C G1895T G11083T C21711T G26144T A29695G

EPI_ISL_424352 GWHACEY01000001 MT281577
 2020-03-10 2020-04-04
 China SARS-CoV-2/Fuyang_FY002/human/2020/CHN
 T721C G1895T G11083T C21711T G26144T A29695G

EPI_ISL_424361
 2020-03-10 2020-04-13
 India hCoV-19/India/1063/2020
 AT1- G7C C884T G1397A G8653T G11083T G27613T T28688C C29296T G29742T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_424362
 2020-03-10 2020-04-13
 India hCoV-19/India/1135/2020
 ATTAAAGGTTTATAC1- C241T C3037T C4809T C14408T C22855A C22858A T22861A T22863A A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_424670
 2020-03-10 2020-04-13
 Mexico hCoV-19/Mexico/Queretaro-InDRE_04/2020
 C8782T C26088T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_424864
 2020-03-10 2020-04-13
 United States hCoV-19/USA/GA_2343/2020
 T490A C3177T C8782T T18736C C21588T C24034T T26729C G28077C T28144C A29700G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_425179
 2020-03-10 2020-04-14
 Spain hCoV-19/Spain/Valencia55/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425180
 2020-03-10 2020-04-14
 Spain hCoV-19/Spain/Valencia56/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425181
 2020-03-10 2020-04-14
 Spain hCoV-19/Spain/Valencia57/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425182
 2020-03-10 2020-04-14
 Spain hCoV-19/Spain/Valencia58/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T9477A C14805T C21697T G25979T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425183
 2020-03-10 2020-04-14
 Spain hCoV-19/Spain/Valencia59/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T9477A C14805T C21697T G25979T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425184
 2020-03-10 2020-04-14
 Spain hCoV-19/Spain/Valencia60/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425185
 2020-03-10 2020-04-14
 Spain hCoV-19/Spain/Valencia61/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425186
 2020-03-10 2020-04-14
 Spain hCoV-19/Spain/Valencia62/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425663
 2020-03-10 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR12/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C23422T T23849C C29686T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425800
 2020-03-10 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR69/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6653R C14408T C23086T A23403G C27046T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_426293
 2020-03-10 2020-04-15
 United States hCoV-19/USA/NY-Wadsworth-12883-02/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426362
 2020-03-10 2020-04-16
 Mexico hCoV-19/Mexico/CDMX-INCMNSZ_02/2020
 C8782T T9477A C14805T C23280T G25979T T28144C C28657T C28863T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_427305
 2020-03-10 2020-04-18
 Brazil hCoV-19/Brazil/SC-766/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C6312A G11083T C12403T C13730T C23929T C28311T AG29782CT G29786C TATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29791-

EPI_ISL_427306
 2020-03-10 2020-04-18
 Brazil hCoV-19/Brazil/SC-769/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C14408T A23403G G25563T AG29782CT G29786C TATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29791-

EPI_ISL_428671 MT371048
 2020-03-10 2020-04-21
 Sri Lanka SARS-CoV-2/human/LKA/COV53/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_429157
 2020-03-10 2020-04-23
 Sweden hCoV-19/Sweden/20-50234/2020
 C241T C3037T C14408T A23403G G25273T GGG28881AAC

EPI_ISL_429158
 2020-03-10 2020-04-23
 Sweden hCoV-19/Sweden/20-50235/2020
 C241T C3037T A12790G C13568T G14209A C14408T A23403G

EPI_ISL_429262
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH01/2020
 C241T A761G C1059T C3037T A6825C C14408T A23403G G25563T

EPI_ISL_429263
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH02/2020
 C241T C583T C1059T C3037T A6825C C14408T A23403G G25563T

EPI_ISL_429264
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH03/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429265
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH04/2020
 C241T C1059T C3037T C8476T G13749T C14408T A23403G G25563T

EPI_ISL_429266
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH05/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429267
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH06/2020
 C241T C1059T C3037T G13749T C14408T A23403G G25563T

EPI_ISL_429268
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH07/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429269
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH08/2020
 C241T C1059T C3037T G12070T C14408T A23403G G24199T G25563T

EPI_ISL_429270
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH11/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429271
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH13/2020
 C241T C1059T C3037T C12885T C14408T A23403G G25563T

EPI_ISL_429272
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH14/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429273
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH15/2020
 C106T C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC

EPI_ISL_429274
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH16/2020
 C241T C1059T C3037T C14408T C19263T A23403G G25563T

EPI_ISL_429275
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH17/2020
 C241T C1059T C3037T C14408T C19263T A23403G G25563T

EPI_ISL_429276
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH18/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429277
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH19/2020
 C241T C1059T C3037T A6133G C14408T G20419T A23403G G25563T

EPI_ISL_429278
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH20/2020
 C241T C3037T C14408T A23403G G25563T

EPI_ISL_429279
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH21/2020
 G1440A G2891A C7011T

EPI_ISL_429280
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH22/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429281
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH23/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429371
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI155/2020
 C241T C1059T C3037T C14408T A23403G G25563T A29389G

EPI_ISL_429372
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI156/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429404
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI207/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429405
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI209/2020
 C241T C3037T C14408T A23403G G27163T G28329T

EPI_ISL_429408
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI216/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_429409
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI219/2020
 C241T C1059T C3037T A23403G G25563T

EPI_ISL_429410
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI221/2020
 C241T C3037T C14408T C22277A A23403G C27046T GGG28881AAC

EPI_ISL_429420
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI258/2020
 G1440A G2891A C7011T

EPI_ISL_429421
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI259/2020
 G1440A G2891A C7011T

EPI_ISL_429424
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI262/2020
 C241T T658C C3037T C14408T G21604T A23403G A24862G G26209C C28629T

EPI_ISL_429425
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI263/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_429426
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI264/2020
 G1440A G2891A C7011T

EPI_ISL_429427
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI265/2020
 G1440A G2891A C7011T

EPI_ISL_429428
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI268/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429431
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI271/2020
 C241T C1059T C3037T C3743T C14408T A23403G G25563T

EPI_ISL_429433
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI272/2020
 C241T C1059T C3037T C14408T G15380T A23403G G25563T

EPI_ISL_429434
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI273/2020
 C241T T658C C3037T C14408T A23403G A24862G G26209C C28629T

EPI_ISL_429439
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI279/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429440
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI280/2020
 C241T C1059T C3037T C14408T A23403G T25414C G25563T

EPI_ISL_429448
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI293/2020
 G1440A G2891A C7011T C11962T

EPI_ISL_429449
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI298/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429450
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI299/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429451
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI300/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429452
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI301/2020
 C241T C1059T C3037T C7162T C14408T T18300C A23403G G25563T

EPI_ISL_429453
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI302/2020
 C241T C1059T C3037T C14408T A23403G G25563T A29389G

EPI_ISL_429501
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI407/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429502
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI408/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429503
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI409/2020
 C241T C1059T C3037T C14408T G15380T A23403G G25563T

EPI_ISL_429505
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI411/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429507
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI412/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_429509
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI413/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429511
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI414/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429513
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI416/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429514
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI417/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429516
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI418/2020
 C241T C1059T C3037T C14408T A23403G G25563T G29422T

EPI_ISL_429807
 2020-03-10 2020-04-24
 Canada hCoV-19/Canada/MB_2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6312A C8139T G11083T C13730T C23929T C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_430136 MT627621
 2020-03-10 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S282/2020
 C241T C1059T C3037T C6040T C14408T A23403G G25563T C29259T

EPI_ISL_430286 MT632609
 2020-03-10 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S248/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_430718
 2020-03-10 2020-04-27
 Spain hCoV-19/Spain/Madrid_H12_16/2020
 ATTAAAGGTTTATACCTTCCCAGG1- T25G C241T C3037T C14408T A20268G A23403G G29734C TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_430886 MT412239
 2020-03-10 2020-04-28
 United States SARS-CoV-2/human/USA/UNKNOWN-UW-547/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- C36T C8782T G11083T C17747T A17858G C18060T T28144C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_434125 MT632837
 2020-03-10 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S365/2020
 C17747T A17858G C18060T G20580A C21721T C26456T C27498T T28144C

EPI_ISL_434475
 2020-03-10 2020-04-29
 Greece hCoV-19/Greece/134/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- G11083T C14805T G26144T G28842T TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_434476
 2020-03-10 2020-04-29
 Greece hCoV-19/Greece/135/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGG28881AAC TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_434636 MT295464
 2020-03-10 2020-04-06
 United States SARS CoV-2/human/USA/UF-1/2020
 ATTAAAGGTTT1- C8782T C17747T A17858G C18060T A24694T T28144C

EPI_ISL_434643
 2020-03-10 2020-04-30
 Sweden hCoV-19/Sweden/20-05448/2020
 C241T C3037T C14408T A23403G A26530G

EPI_ISL_434644
 2020-03-10 2020-04-30
 Sweden hCoV-19/Sweden/20-05469/2020
 C241T C3037T C14408T A23403G A26530G

EPI_ISL_435129
 2020-03-10 2020-05-03
 United Arab Emirates hCoV-19/United Arab Emirates/L1758/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_435133
 2020-03-10 2020-05-03
 United Arab Emirates hCoV-19/United Arab Emirates/L4184/2020
 G2494A C18501T

EPI_ISL_435311
 2020-03-10 2020-05-04
 Vietnam hCoV-19/Vietnam/VNHN_0418/2020
 A1- A5C C241T C3037T A6276G C14408T A23403G GGG28881AAC AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_435312
 2020-03-10 2020-05-04
 Vietnam hCoV-19/Vietnam/VNHN_0419/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC A29878G AAAAAAAAAAAAAAAAAAAA29884-

EPI_ISL_435627
 2020-03-10 2020-05-05
 United States hCoV-19/USA/CA-SCCPHD-UC148/2020
 C15848T G29711T

EPI_ISL_435634
 2020-03-10 2020-05-05
 United States hCoV-19/USA/CA-SCCPHD-UC155/2020
 G27798A C27874T

EPI_ISL_436074 MT434805
 2020-03-10 2020-05-05
 United States SARS-CoV-2/human/USA/NY-CDC-SURV0862NYC/2020
 C241T C1059T C11916T C14408T C18998T A23403G G25563T G29540A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_436075 MT434806
 2020-03-10 2020-05-05
 United States SARS-CoV-2/human/USA/NY-CDC-SURV0863NYC/2020
 C241T C1059T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_436803 MT439233
 2020-03-10 2020-05-06
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20162/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_436965
 2020-03-10 2020-05-08
 Denmark hCoV-19/Denmark/ALAB-SSI-284/2020
 C241T GTTATG515- C1059T C3037T C14408T G15380T A23403G G25563T

EPI_ISL_437657
 2020-03-10 2020-05-11
 Denmark hCoV-19/Denmark/ALAB-SSI-242/2020
 C241T C1059T C3037T C14408T A23403G G25563T G29422T

EPI_ISL_437658
 2020-03-10 2020-05-11
 Denmark hCoV-19/Denmark/ALAB-SSI-243/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_437659
 2020-03-10 2020-05-11
 Denmark hCoV-19/Denmark/ALAB-SSI-244/2020
 G1440A G2891A C7011T

EPI_ISL_437661
 2020-03-10 2020-05-11
 Denmark hCoV-19/Denmark/ALAB-SSI-246/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_437662
 2020-03-10 2020-05-11
 Denmark hCoV-19/Denmark/ALAB-SSI-247/2020
 C241T C1059T C3037T -11075T C14408T G20419T A23403G G25563T

EPI_ISL_437664
 2020-03-10 2020-05-11
 Denmark hCoV-19/Denmark/ALAB-SSI-251/2020
 G1440A G2891A C7011T

EPI_ISL_437900 MT459908
 2020-03-10 2020-05-11
 Greece SARS-CoV-2/human/GRC/248_32261/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C6312G C14408T A15593G C18877T A23403G G25563T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_437903 MT459915
 2020-03-10 2020-05-11
 Greece SARS-CoV-2/human/GRC/243_32202/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C10202T C14408T A23403G C25350T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_437905 MT459917
 2020-03-10 2020-05-11
 Greece SARS-CoV-2/human/GRC/246_32206/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C5183T C14408T C18877T A23403G G25563T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_437923
 2020-03-10 2020-05-12
 Austria hCoV-19/Austria/CeMM0034/2020
 C241T C1059T C3037T C14408T A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_437928
 2020-03-10 2020-05-12
 Austria hCoV-19/Austria/CeMM0039/2020
 C241T C1059T C3037T C14408T A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_437974
 2020-03-10 2020-05-12
 Austria hCoV-19/Austria/CeMM0116/2020
 C241T C1059T C3037T C14408T G15380T A23403G G25563T AAAAAAAAAAA29893-

EPI_ISL_438025
 2020-03-10 2020-05-12
 Austria hCoV-19/Austria/CeMM0183/2020
 C241T C3037T G12832A C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_441410
 2020-03-10 2020-05-12
 United Kingdom hCoV-19/Northern Ireland/NIRE-1023D7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_444841
 2020-03-10 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-1272/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_445251
 2020-03-10 2020-05-15
 Chile hCoV-19/Chile/Santiago_8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C313T C3037T C14408T A23403G C25782T C28102T GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_445253
 2020-03-10 2020-05-15
 Chile hCoV-19/Chile/Santiago_10/2020
 A1C C241T C3037T C14408T C18877T A23403G G25563T TCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29834C

EPI_ISL_445255
 2020-03-10 2020-05-15
 Chile hCoV-19/Chile/Santiago_12/2020
 A5G G7C C241T C3037T C14408T C19170T G19509A A23403G GGG28881AAC C29109T CTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29831-

EPI_ISL_445256
 2020-03-10 2020-05-15
 Chile hCoV-19/Chile/Santiago_13/2020
 AT1GGTTTATGATCCTTTGCAACCTGAA A4T T76W T78K C241T C313T C3037T C14408T G18826T G20006T A23403G GGG28881AAC TCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29834C

EPI_ISL_445257
 2020-03-10 2020-05-15
 Chile hCoV-19/Chile/Santiago_14/2020
 -2ACACAGTTTATGATCCTTTGCAACCTGAA -5GACAGAATGTACAT T76W T78K C8782T C14599T G18826T C19983T C26088T C26873T T28144C CCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29835-

EPI_ISL_445259
 2020-03-10 2020-05-15
 Chile hCoV-19/Chile/Santiago_16/2020
 TTAAAGGTTTATACCT2- C8782T T9477A C14805T G25979T T28144C C28657T C28863T TCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29834C

EPI_ISL_447646 MT459902
 2020-03-10 2020-05-11
 Greece SARS-CoV-2/human/GRC/239_32178/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_447647 MT459907
 2020-03-10 2020-05-11
 Greece SARS-CoV-2/human/GRC/247_32207/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_447648 MT459909
 2020-03-10 2020-05-11
 Greece SARS-CoV-2/human/GRC/250_32267/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_450087
 2020-03-10 2020-05-20
 United States hCoV-19/USA/NY-PV09407/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14178T C14408T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450113
 2020-03-10 2020-05-20
 United States hCoV-19/USA/NY-PV09436/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C3037T C14408T A23403G GGG28881AAC AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450114
 2020-03-10 2020-05-20
 United States hCoV-19/USA/NY-PV09437/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_452105 MT512433
 2020-03-10 2020-05-26
 United States SARS-CoV-2/human/USA/TX-CDC-3008/2020
 C241T C1059T C3037T C14408T A23403G G25015K G25563T C27964T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_452106 MT512434
 2020-03-10 2020-05-26
 United States SARS-CoV-2/human/USA/LA-CDC-0499/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_452107 MT512435
 2020-03-10 2020-05-26
 United States SARS-CoV-2/human/USA/LA-CDC-0757/2020
 C241T C1059T C1913T C3037T C14408T A23403G G25563T C27964T C28099T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_452108 MT512436
 2020-03-10 2020-05-26
 United States SARS-CoV-2/human/USA/MN-CDC-0103/2020
 C241T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_452112 MT512440
 2020-03-10 2020-05-26
 United States SARS-CoV-2/human/USA/TX-CDC-3009/2020
 C241T C2416T C3037T T9708C C10712T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_452113 MT512441
 2020-03-10 2020-05-26
 United States SARS-CoV-2/human/USA/MN-CDC-0108/2020
 T490A C3177T T3766C C5211T C8782Y A16790R T18736C C24034T T26729C C27635Y G28077S T28144C A29700G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_452114 MT512442
 2020-03-10 2020-05-26
 United States SARS-CoV-2/human/USA/KS-CDC-4589/2020
 C241T C3037T C14408T A23403G C23683Y AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_452117 MT512445
 2020-03-10 2020-05-26
 United States SARS-CoV-2/human/USA/NJ-CDC-7300/2020
 C241T C1059T C3037T C14408T A23403G G25563T A27821G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_452133 MT512416
 2020-03-10 2020-05-26
 United States SARS-CoV-2/human/USA/MN-CDC-0106/2020
 C8782T T10480C C17747T A17858G C18060T A24694T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_452213
 2020-03-10 2020-05-27
 India hCoV-19/India/NIV-981/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- G1397A A3039G G11083T A18052G A25596G T28688C A28795G G29742T A29827T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830T

EPI_ISL_452539
 2020-03-10 2020-05-27
 Spain hCoV-19/Spain/COV001362/2020
 C8782T A11430R G20068K C20132T C26088T T28144C

EPI_ISL_452541
 2020-03-10 2020-05-27
 Spain hCoV-19/Spain/COV001360/2020
 C8782T C10782Y C20132T C26088T T28144C

EPI_ISL_452735
 2020-03-10 2020-05-27
 Spain hCoV-19/Spain/COV000754/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T C29870A

EPI_ISL_454004
 2020-03-10 2020-05-28
 Portugal hCoV-19/Portugal/PT0288/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454005
 2020-03-10 2020-05-28
 Portugal hCoV-19/Portugal/PT0289/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A17013T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454443
 2020-03-10 2020-05-28
 Sweden hCoV-19/Sweden/20-08128/2020
 G1440A G2891A C7011T C18804T C23520T

EPI_ISL_454444
 2020-03-10 2020-05-28
 Sweden hCoV-19/Sweden/20-08129/2020
 C241T C3037T C5547T C5730T C14408T A23403G GGG28881AAC

EPI_ISL_454445
 2020-03-10 2020-05-28
 Sweden hCoV-19/Sweden/20-08131/2020
 C241T C3037T C14408T A23403G C23575T G23587C

EPI_ISL_454446
 2020-03-10 2020-05-28
 Sweden hCoV-19/Sweden/20-08132/2020
 C241T AAGTCATTT686- C1059T C3037T C14408T A23403G G25563T

EPI_ISL_454476
 2020-03-10 2020-05-28
 Sweden hCoV-19/Sweden/20-08105/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_454477
 2020-03-10 2020-05-28
 Sweden hCoV-19/Sweden/20-08106/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_454785
 2020-03-10 2020-05-29
 Netherlands hCoV-19/Netherlands/Utrecht_10036/2020
 ATTAAAGGTTTAT1- T514C ATG1605- C17410T AAAAAAAAAAAAAAAAAAAAAA29882-

EPI_ISL_454897
 2020-03-10 2020-05-29
 Sweden hCoV-19/Sweden/20-50283/2020
 G1440A G2891A C7011T C26568T

EPI_ISL_454898
 2020-03-10 2020-05-29
 Sweden hCoV-19/Sweden/20-50285/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_454899
 2020-03-10 2020-05-29
 Sweden hCoV-19/Sweden/20-50288/2020
 G1440A G2891A C7011T

EPI_ISL_454900
 2020-03-10 2020-05-29
 Sweden hCoV-19/Sweden/20-50292/2020
 C241T C3037T G4255T C14408T T16456G C20051T A23403G A26530G G29348T

EPI_ISL_454901
 2020-03-10 2020-05-29
 Sweden hCoV-19/Sweden/20-50293/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T G27916A

EPI_ISL_455331
 2020-03-10 2020-05-29
 Spain hCoV-19/Spain/Galicia201863/2020
 A1- A6T C8782T T9477A C14805T G25455T G25537T G25979T T28144C C28657T C28863T TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_455332
 2020-03-10 2020-05-29
 Spain hCoV-19/Spain/Galicia202076/2020
 ATTAAAGGTTTATACCT1- C241T C3037T C14408T A20268G A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_455356 MT539163 MW008580
 2020-03-10 2020-05-29
 United States SARS-CoV-2/human/USA/GA-EHC-086H/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- T490A C3177T C8782T A9507G T18736C C24034T T26729C G27506C C27635T T27698G G28077C T28144C A29700G AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_455360
 2020-03-10 2020-05-29
 United States hCoV-19/USA/GA-EHC-087I/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- T490A C3177T C8782T T18736C C24034T T26729C C27635T T27698G G28077C T28144C A29700G AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_455840
 2020-03-10 2020-06-01
 Sweden hCoV-19/Sweden/20-50276/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_455841
 2020-03-10 2020-06-01
 Sweden hCoV-19/Sweden/20-50280/2020
 C241T C3037T A12790G C13568T C14408T A23403G

EPI_ISL_455843
 2020-03-10 2020-06-01
 Sweden hCoV-19/Sweden/20-08158/2020
 G1440A G2891A C7011T G25593C

EPI_ISL_455844
 2020-03-10 2020-06-01
 Sweden hCoV-19/Sweden/20-08162/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_455898
 2020-03-10 2020-06-01
 Sweden hCoV-19/Sweden/20-50284/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_455899
 2020-03-10 2020-06-01
 Sweden hCoV-19/Sweden/20-50286/2020
 C241T C1059T C3037T C14408T G15380T A23403G G25563T

EPI_ISL_455900
 2020-03-10 2020-06-01
 Sweden hCoV-19/Sweden/20-50287/2020
 C241T C1059T C3037T C13506T C14408T A23403G G25563T C26201T

EPI_ISL_455901
 2020-03-10 2020-06-01
 Sweden hCoV-19/Sweden/20-50289/2020
 C241T C3037T C14408T A23403G C23575T G23587C

EPI_ISL_456117
 2020-03-10 2020-06-02
 Colombia hCoV-19/Colombia/INS-79253/2020
 C8782T C13384T C17470T G19735T C26088T T28144C G28985T

EPI_ISL_460821
 2020-03-10 2020-06-06
 Netherlands hCoV-19/Netherlands/Overijssel_31/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461001
 2020-03-10 2020-06-06
 Netherlands hCoV-19/Netherlands/Limburg_13/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A T15665C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461103
 2020-03-10 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_668/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- C17410T C24107T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461109
 2020-03-10 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_674/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- A27383G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461111
 2020-03-10 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_676/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T1570C G11083T C14805T T17247C G26144T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_464745
 2020-03-10 2020-06-11
 United Kingdom hCoV-19/England/201141179/2020
 C241T A1461G C3037T C5730T C14408T T20166W C23179Y A23403G GGG28881AAC

EPI_ISL_464783
 2020-03-10 2020-06-11
 United Kingdom hCoV-19/England/201160065/2020
 C241T C3037T GT5743SY C14408T A23403G G24301K G25429T

EPI_ISL_464788
 2020-03-10 2020-06-11
 United Kingdom hCoV-19/England/201160216/2020
 ATG1605- C16247Y G20335T C20806Y

EPI_ISL_464797
 2020-03-10 2020-06-11
 United Kingdom hCoV-19/England/201160628/2020
 A2480G C2558T A9741R G11083T C14284Y C14805T C22088T G26144T

EPI_ISL_464817
 2020-03-10 2020-06-11
 United Kingdom hCoV-19/England/201161180/2020
 C241T C3037T C14408T G19677T A23403G GGG28881AAC

EPI_ISL_464830
 2020-03-10 2020-06-11
 United Kingdom hCoV-19/England/201161300/2020
 A2480G C2558T G11083T C14805T G26144T

EPI_ISL_464831
 2020-03-10 2020-06-11
 United Kingdom hCoV-19/England/201161311/2020
 A2480G C2558T G11083T C14805T G26144T G29254T

EPI_ISL_466949 LR824049
 2020-03-10 2020-06-12
 Switzerland 100025
 C241T C3037T C14408T C15324T G15444T T19372K T19468Y A19548R T22516W A23403G

EPI_ISL_466951 LR824052
 2020-03-10 2020-06-12
 Switzerland 100027
 C241T C3037T C14408T C15324T A19298W C19386Y A19410R A19472M A23403G

EPI_ISL_466953 LR824064
 2020-03-10 2020-06-12
 Switzerland 100029
 C241T C3037T C14408T C15324T G15444T G19501K A23403G

EPI_ISL_466955 LR824063
 2020-03-10 2020-06-12
 Switzerland 100031
 C241T C3037T C14408T C19170T G19509A A23403G GGG28881AAC

EPI_ISL_467951
 2020-03-10 2020-06-16
 United States hCoV-19/USA/CA-SR0416/2020
 C8782T C17747T A17858G C18060T A24694T T28144C

EPI_ISL_467958
 2020-03-10 2020-06-16
 United States hCoV-19/USA/CA-SR0428/2020
 C8782T C17747T A17858G C18060T A24694T T28144C

EPI_ISL_467973
 2020-03-10 2020-06-16
 United States hCoV-19/USA/CA-SR0449/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_469073
 2020-03-10 2020-06-17
 Sweden hCoV-19/Sweden/20-08130/2020
 C241T C3037T C14408T A23403G C23575T G23587C

EPI_ISL_471530
 2020-03-10 2020-06-22
 Czech Republic hCoV-19/Czech Republic/NRL_1885/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A26530G T28010C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471540
 2020-03-10 2020-06-22
 Czech Republic hCoV-19/Czech Republic/NRL_2307/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T22510C A23403G GGG28881AAC C29774T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475553
 2020-03-10 2020-06-23
 Sweden hCoV-19/Sweden/20-08133/2020
 T514C ATG1605- A13512G G16117T C17410T

EPI_ISL_475554
 2020-03-10 2020-06-23
 Sweden hCoV-19/Sweden/20-08136/2020
 ATG1605- T6163A C8748T C12923A C13430T C19366T T28110C

EPI_ISL_475555
 2020-03-10 2020-06-23
 Sweden hCoV-19/Sweden/20-08160/2020
 C1385T C14805T T17247C G26144T

EPI_ISL_475560
 2020-03-10 2020-06-23
 Sweden hCoV-19/Sweden/20-50237/2020
 C241T C3037T C3373A C5654T C14408T A23403G C24034T GGG28881AAC

EPI_ISL_475561
 2020-03-10 2020-06-23
 Sweden hCoV-19/Sweden/20-50243/2020
 T514C ATG1605- G3403A G23856T

EPI_ISL_475831
 2020-03-10 2020-06-25
 Austria hCoV-19/Austria/CeMM0391/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C22450T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475854
 2020-03-10 2020-06-25
 Austria hCoV-19/Austria/CeMM0426/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475879
 2020-03-10 2020-06-25
 Austria hCoV-19/Austria/CeMM0474/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C22450T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475913
 2020-03-10 2020-06-25
 Austria hCoV-19/Austria/CeMM0563/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A8072G C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476813
 2020-03-10 2020-06-26
 Singapore hCoV-19/Singapore/477/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C14408T A23403G G25563T G26143A G26233T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479847
 2020-03-10 2020-07-01
 Japan hCoV-19/Japan/PG-0110/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C11752T C19170A C28253T G28857T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_479848
 2020-03-10 2020-07-01
 Japan hCoV-19/Japan/PG-0111/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C11752T C19170A TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_479849
 2020-03-10 2020-07-01
 Japan hCoV-19/Japan/PG-0113/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C11752T C19170A C29614T TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_480310
 2020-03-10 2020-07-01
 Bulgaria hCoV-19/Bulgaria/41/2020
 C241T C3037T C14408T A23403G A26530G

EPI_ISL_480791 MT703958
 2020-03-10 2020-07-02
 United States SARS-CoV-2/human/USA/FL-BPHL-0140/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C2416T C3037T A4528G C14408T C17410T A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_481077
 2020-03-10 2020-07-02
 Spain hCoV-19/Spain/Madrid_COV004908/2020
 C241T C1572Y C3037T C14408T A20268G A23403G

EPI_ISL_482989
 2020-03-10 2020-07-06
 United States hCoV-19/USA/MN-MDH-1268/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C36T C241T C3037T C14408T A23403G C27046T GGG28881AAC AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_482994
 2020-03-10 2020-07-06
 United States hCoV-19/USA/MN-MDH-1273/2020
 ATTAAAGGTTTATACC1- C8782T C15240T A17858G C18060T C20178T C21774T G25217T T28144C GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_485832 MT739438 MT913051
 2020-03-10 2020-07-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0530/2020
 ATTA1- C241T C1059T C3037T C14408T A23403G G25563T C29548A

EPI_ISL_488223
 2020-03-10 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F705/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488241
 2020-03-10 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F7C9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488306
 2020-03-10 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F7F6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C21789Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488413
 2020-03-10 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F6F9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C14408T A23403G G25563T G26109T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488447
 2020-03-10 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F78D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T11638C G12070K C14408T A23403G C25584A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489990
 2020-03-10 2020-07-14
 Peru hCoV-19/Peru/INS-014/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAA1- C241T C3037T T8800C C14408T C15277T A21917G A23403G A26530G ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_490315
 2020-03-10 2020-07-15
 Peru hCoV-19/Peru/INS-016/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAA1- C241T C3037T G10265A C14408T G14829T A23403G GGG28881AAC ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_491099
 2020-03-10 2020-07-15
 United States hCoV-19/USA/SC-DHEC-0008/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- T490A C3177T C8782T T18736C C24034T T26729C G28077C T28144C TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_491463
 2020-03-10 2020-07-17
 Peru hCoV-19/Peru/INS-013/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAA1- C241T C3037T C14408T C15277T C17410Y C18804Y C19160Y A21917G A23403G A26530G ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_492601
 2020-03-10 2020-07-20
 United Kingdom hCoV-19/England/BRIS-130992/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A481G C3037T C14408T A14691G G20398A A23403G A26530G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492986
 2020-03-10 2020-07-20
 Italy hCoV-19/Italy/NegrarVR_7/2020
 ATTA1- C241T C3037T C14408T A23403G G25909T C27213T T29867A C29870A

EPI_ISL_495116
 2020-03-10 2020-07-22
 United Kingdom hCoV-19/England/BRIS-18547FE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498006
 2020-03-10 2020-07-26
 South Korea hCoV-19/Korea/KCDC2105/2020
 AT1- G5572T G11083T C14805T G26144T G27441T

EPI_ISL_498007
 2020-03-10 2020-07-26
 South Korea hCoV-19/Korea/KCDC2106/2020
 ATTAAAGG1- G5572T G11083T C14805T G26144T G27441T

EPI_ISL_498008
 2020-03-10 2020-07-26
 South Korea hCoV-19/Korea/KCDC2107/2020
 ATT1- G5572T G11083T C14805T G26144T G27441T AAAAAAAAAAAA29892-

EPI_ISL_499815
 2020-03-10 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A4B1C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- ATG1605- C11747T G29032A

EPI_ISL_499824
 2020-03-10 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A48D9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- TGTTATGGT514- A2480G C2558T G11083T C14805T G26144T

EPI_ISL_500037
 2020-03-10 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A4736/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C3373A C14408T C14688T A23403G GGG28881AAC C29870A

EPI_ISL_500057
 2020-03-10 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A496D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G1440A G2891R A10323G C10507T

EPI_ISL_500067
 2020-03-10 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A4A97/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC

EPI_ISL_500407
 2020-03-10 2020-07-28
 Spain hCoV-19/Spain/COV005973/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C1059T C3037T T13006C C14408T G17302T A23403G G25563T C25688T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_500429
 2020-03-10 2020-07-28
 Spain hCoV-19/Spain/COV005997/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_500627
 2020-03-10 2020-07-29
 Australia hCoV-19/Australia/NSW2139/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1397A C2113T G11083T C15720T C18928T T28688C G29374A G29742T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500637
 2020-03-10 2020-07-29
 Australia hCoV-19/Australia/NSW2159/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_508941
 2020-03-10 2020-08-04
 France hCoV-19/France/ARA0731/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T C3037T C14408T A23403G G25563T TTTAAAGTTTCCATTTGGAATCTTGA27265- AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_508942
 2020-03-10 2020-08-04
 France hCoV-19/France/ARA07314/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAA1- C241T G1306T C3037T C14408T C15324T A15860G G18859T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_510274
 2020-03-10 2020-08-06
 Spain hCoV-19/Spain/COV004035/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A20268G A23403G G29734C AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_513414 MT886288
 2020-03-10 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0001/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAA1- C241T C3037T C14408T A23403G GGG28881AAC AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_514338 EPI_ISL_516786
 2020-03-10 2020-08-16
 Peru hCoV-19/Peru/INS-065/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAA1- C241T C3037T C14408T C15277T A21917G A23403G A26530G ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_516801
 2020-03-10 2020-08-24
 Singapore hCoV-19/Singapore/829/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C14408T A23403G G25563T G26143A G26233T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516842
 2020-03-10 2020-08-24
 United Kingdom hCoV-19/England/LOND-125FCAF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A C4021T C10507T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516870
 2020-03-10 2020-08-24
 United Kingdom hCoV-19/England/LOND-125FBEE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A5302R C14408T A23403G G23608R CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_517958
 2020-03-10 2020-08-24
 Peru hCoV-19/Peru/INS-068/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAA1- C241T C3037T C14408T C15277T A21917G A23403G A26530G ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_524472
 2020-03-10 2020-08-28
 Peru hCoV-19/Peru/ARE-INS-087/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAA1- C241T C813T G1212T C3037T C14408T A23403G G25429T ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_525592
 2020-03-10 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-12669-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C12242T C13426T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_525593
 2020-03-10 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-12692-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T G28808T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_525594
 2020-03-10 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-12767-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C7119T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_525595
 2020-03-10 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-12806-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T A8882G C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_525596
 2020-03-10 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-12813-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T G28808T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_525598
 2020-03-10 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-12848-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T A8882G C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_525602
 2020-03-10 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-13459-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T G640A C1059T C3037T C4655T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_527974
 2020-03-10 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42184365/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G AATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29849-

EPI_ISL_534975
 2020-03-10 2020-09-14
 United Kingdom hCoV-19/England/OXON-B47F7/2020
 C241T C3037T C14408T A23403G G24077T G26167T

EPI_ISL_535720
 2020-03-10 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00213733/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T C3096T C9170T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535721
 2020-03-10 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00213861/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C3037T C14408T G18534A A23403G G25563T G28086R T28088W CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_535723
 2020-03-10 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00214023/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537426
 2020-03-10 2020-09-16
 Spain hCoV-19/Spain/RI-CSIC-99005884/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C583T C8782T T9477A C14805T G25979T C26527T T28144C C28657T C28863T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_537828
 2020-03-10 2020-09-16
 Spain hCoV-19/Spain/RI-CSIC-98002305/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T T13006C C14408T G17302T C21762Y A23403G G25563T C25688T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_538823
 2020-03-10 2020-09-17
 United Kingdom hCoV-19/England/LEED-2AA15E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G23426T C23575T G23587C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539562
 2020-03-10 2020-09-18
 Spain hCoV-19/Spain/EX-ISCIII-201963/2020
 C241T C3037T C14408T A20268G A23403G C27476T

EPI_ISL_539564
 2020-03-10 2020-09-18
 Spain hCoV-19/Spain/GA-ISCIII-201859/2020
 A1- A27C C8782T T9477A C14805T GACATGAGTA21394- T21434A G25537T G25979T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539565
 2020-03-10 2020-09-18
 Spain hCoV-19/Spain/GA-ISCIII-202075/2020
 A1- T3A G11083T C19366T T21181C G26144T G29474T G29742T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_547450
 2020-03-10 2020-09-24
 Netherlands hCoV-19/Curacao/CW-RIVM-10092/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T1606C G29032A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547451
 2020-03-10 2020-09-24
 Netherlands hCoV-19/Curacao/CW-RIVM-10093/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T1606C G29032A C29754T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547452
 2020-03-10 2020-09-24
 Netherlands hCoV-19/Curacao/CW-RIVM-10094/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T1606C G29032A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547461
 2020-03-10 2020-09-24
 Netherlands hCoV-19/Netherlands/GE-RIVM-10095/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G28001T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547491
 2020-03-10 2020-09-24
 Netherlands hCoV-19/Netherlands/NH-RIVM-10047/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C T1606C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547501
 2020-03-10 2020-09-24
 Netherlands hCoV-19/Netherlands/NH-RIVM-10103/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2000C C3037T C14408T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547502
 2020-03-10 2020-09-24
 Netherlands hCoV-19/Netherlands/NH-RIVM-10104/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A C7011T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549176
 2020-03-10 2020-09-28
 Sweden hCoV-19/Sweden/RV-FOI-2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C1912T C25047T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560621
 2020-03-10 2020-09-29
 France hCoV-19/France/GE8771/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G G28690T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560972
 2020-03-10 2020-09-30
 Sweden hCoV-19/Sweden/20-50303/2020
 C241T C3037T C4002T G10097A C13536T C14408T A23403G G23663T C23731T T24311C GGG28881AAC

EPI_ISL_569250
 2020-03-10 2020-10-02
 France hCoV-19/France/IHU-0021/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1059T C3037T G11083T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

MT292570
 2020-03-10 2020-04-05
 Spain SARS-CoV-2/human/ESP/Valencia17/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C29144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT292572
 2020-03-10 2020-04-05
 Spain SARS-CoV-2/human/ESP/Valencia11/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T T18834C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT292575
 2020-03-10 2020-04-05
 Spain SARS-CoV-2/human/ESP/Valencia16/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT325575
 2020-03-10 2020-04-10
 United States SARS-CoV-2/human/USA/GA_2343/2020
 T490A C3177T C8782T T18736C C21588T C24034T T26729C G28077C T28144C A29700G AAAAAAAAAAAAAAAAAAAAA29883-

MT459850
 2020-03-10 2020-05-11
 Greece SARS-CoV-2/human/GRC/134_32124/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- G11083T C14805T G26144T G28842T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

MT459851
 2020-03-10 2020-05-11
 Greece SARS-CoV-2/human/GRC/135_32174/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

MT764174
 2020-03-10 2020-07-15
 United States SARS-CoV-2/human/USA/COVID20-0008/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- T490A C3177T C8782T T18736C C24034T T26729C G28077C T28144C TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

MT810553
 2020-03-10 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0416-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C8782T C17747T A17858G C18060T A24694T T28144C CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810560
 2020-03-10 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0428-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C8782T C17747T A17858G C18060T A24694T T28144C CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810573
 2020-03-10 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0449-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C8782T C17747T A17858G C18060T T28144C CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT873332
 2020-03-10 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00011/2020
 ATTA1- C8782T C17747T A17858G C18060T C21789T T28144C

MT956918
 2020-03-10 2020-09-03
 Spain SARS-CoV-2/human/ESP/HUD-70062002/2020
 C241T C3037T C14408T A23403G C29250T

EPI_ISL_414648
 2020-03-11 2020-03-16
 United States hCoV-19/USA/CA-PC101P/2020
 C241T C3037T C14408T C18814T A23403G

EPI_ISL_415471 LR878338
 2020-03-11 2020-03-17
 Netherlands hCoV-19/Netherlands/NA_15/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T A11438G C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415472 LR878349
 2020-03-11 2020-03-17
 Netherlands hCoV-19/Netherlands/NA_16/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T C14408T G20275A A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415501 LR878342
 2020-03-11 2020-03-17
 Netherlands hCoV-19/Netherlands/NoordBrabant_44/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- T514C ATG1605- C17410T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415503 LR878356
 2020-03-11 2020-03-17
 Netherlands hCoV-19/Netherlands/NoordBrabant_46/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C8782T T9477A G10523A C14805T G18662T G25273C G25979T T28144C C28657T C28863T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415505 LR878348
 2020-03-11 2020-03-17
 Netherlands hCoV-19/Netherlands/NoordBrabant_48/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- T514C ATG1605- T3541C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415506 LR878353
 2020-03-11 2020-03-17
 Netherlands hCoV-19/Netherlands/NoordBrabant_49/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- T514C ATG1605- TCA12620- C17410T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415514 LR878082
 2020-03-11 2020-03-17
 Netherlands hCoV-19/Netherlands/NoordBrabant_58/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415515 LR878091
 2020-03-11 2020-03-17
 Netherlands hCoV-19/Netherlands/NoordBrabant_59/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C1059T C3037T C14408T A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415516 LR878078
 2020-03-11 2020-03-17
 Netherlands hCoV-19/Netherlands/NoordBrabant_60/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- ATG1605- T6163A C12923A C13430T C19366T T28110C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415534 LR878075
 2020-03-11 2020-03-17
 Netherlands hCoV-19/Netherlands/ZuidHolland_30/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C1059T C3037T C14408T TTA21991- A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_416024
 2020-03-11 2020-03-19
 United Kingdom hCoV-19/Wales/PHW35/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G431A C20270T C28725T A29683T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_416448 MT252691
 2020-03-11 2020-03-21
 United States SARS-CoV-2/human/USA/WA-UW92/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAA1- C8782T C17747T A17858G C18060T T28144C AAAA29900-

EPI_ISL_416480
 2020-03-11 2020-03-22
 Georgia hCoV-19/Georgia/Tb-537/2020
 ATT1- A915G G11083T G23522C G26144T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_416498
 2020-03-11 2020-03-22
 France hCoV-19/France/IDF2256/2020
 C241T C1059T C3037T C10582T C14408T A23403G C23707T G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_416499
 2020-03-11 2020-03-22
 France hCoV-19/France/IDF2278/2020
 C241T C3037T C14408T C15324T A23403G C27208T AAAAAAAAAAAAAAAAAAAAAA29882-

EPI_ISL_416524
 2020-03-11 2020-03-22
 Japan hCoV-19/Japan/SMU-0311S2/2020
 G101A C241T C3037T C14408T A23403G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_416525
 2020-03-11 2020-03-22
 Japan hCoV-19/Japan/SMU-0311S3/2020
 C241T C3037T C14408T A23403G C29743T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_416641 MT252767
 2020-03-11 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW103/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C8782T C17747T A17858G C18060T T28144C A29871C AAA29901-

EPI_ISL_416642 MT252768
 2020-03-11 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW104/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C1059T C3037T C14408T G15760A A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_416643 MT252769
 2020-03-11 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW105/2020
 ATTAAAGG1- C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_416644 MT252770
 2020-03-11 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW106/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- G6220A C8782T C17747T A17858G C18060T T28144C G29862A AAA29901-

EPI_ISL_416646 MT252772
 2020-03-11 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW108/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- A1515G C9223T G11083T C14805T T17247C G26144T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_416647 MT252773
 2020-03-11 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW109/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACT1- C241T C1059T C3037T C14408T A23403G G25563T G29553A A29903-

EPI_ISL_416648 MT252774
 2020-03-11 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW110/2020
 ATTAAA1- C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_416649 MT252775
 2020-03-11 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW111/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAA1- C8782T C17747T A17858G C18060T T27384C T28144C A29903-

EPI_ISL_416651 MT252777
 2020-03-11 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW113/2020
 ATTAAA1- GTTT8CACA T41- C6310T C8782T C17747T A17858G C18060T G27327T T28144C G28378T AAA29901-

EPI_ISL_416652 MT252778
 2020-03-11 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW114/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAA1- G101A C6696T C8782T C17747T A17858G C18060T T28144C C29416T

EPI_ISL_416653 MT252779
 2020-03-11 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW115/2020
 ATTAAAGG1- A74C C241T C1059T C3037T C14408T A23403G G25563T G29553A

EPI_ISL_416654 MT252780
 2020-03-11 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW116/2020
 ATTAAA1- -55C A6693G C8782T C17747T A17858G C18060T T28144C

EPI_ISL_416655 MT252781
 2020-03-11 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW117/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C1059T C3037T C14408T A23403G G25302T G25563T AAAA29900-

EPI_ISL_416656 MT252782
 2020-03-11 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW118/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C8782T C17747T A17858G C18060T T28144C

EPI_ISL_416657 MT252783
 2020-03-11 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW119/2020
 AT1GA A4T ACC35TTH C8782T C17747T A17858G C18060T T28144C TTC29728GGG CC29732GA AG29735CT A29740T G29764T A29768C A29771C A29776T

EPI_ISL_416658 MT252784
 2020-03-11 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW120/2020
 A1- C241T C3037T C14408T A23403G -29904ANANANA

EPI_ISL_416659 MT252785
 2020-03-11 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW121/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_416668 MT252748
 2020-03-11 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW130/2020
 ATTAAAG1- AACC34HTTH C8782T C17747T A17858G C18060T T27384C T28144C -29904AAAAAAAAAA

EPI_ISL_416669 MT252749
 2020-03-11 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW131/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAA1- A3635G C8782T C17747T A17858G C18060T T28144C TG29867-A C29870A

EPI_ISL_416674 MT252752
 2020-03-11 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW136/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- AACC34CTTT C241T C3037T C14408T C18877T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_416675 MT252753
 2020-03-11 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW137/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- AACC34CTTH A1515G G1944A C9223T G11083T C14805T T17247C A17799G C23987T G26144T G29862A -29904ANANAHATANA

EPI_ISL_416676 MT252754
 2020-03-11 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW138/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGAT1- C241T C3037T C14408T A23403G GGG28881AAC CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_416678 MT252756
 2020-03-11 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW140/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAA1- C241T C1059T C3037T C14408T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_416679 MT252757
 2020-03-11 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW141/2020
 ATTAAAGGTTTATACCTTCCCAGG1- CAAACCAACC28- C8782T C17059A C17747T A17858G C18060T T28144C T28229G A29903C

EPI_ISL_416680 MT252758
 2020-03-11 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW142/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAAC1- C8782T C9565T C17747T A17858G C18060T T28144C G29688T G29692T G29862A AAAAAAA29897-

EPI_ISL_416681 MT252759
 2020-03-11 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW143/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- -55C C8782T C17747T A17858G C18060T T28144C GA29868VT

EPI_ISL_417031
 2020-03-11 2020-03-24
 Australia hCoV-19/Australia/QLDID919/2020
 ATTAAA1- C8782T C17747T A17858G C18060T A24694T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_417032
 2020-03-11 2020-03-24
 Australia hCoV-19/Australia/QLDID920/2020
 ATTAAA1- C241T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_417033
 2020-03-11 2020-03-24
 Australia hCoV-19/Australia/QLDID921/2020
 ATTAA1- C6312A G11083T C13730T C23929T C28311T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_417211
 2020-03-11 2020-03-25
 New Zealand hCoV-19/NewZealand/CoV001/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTT1- T514C ATG1605- C22591T TGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29840-

EPI_ISL_417212
 2020-03-11 2020-03-25
 New Zealand hCoV-19/NewZealand/CoV002/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGA1- C1684T G11083- G13627T C14805T C15540T G26144T A28338G A29403G GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_417397
 2020-03-11 2020-03-25
 Australia hCoV-19/Australia/NSW39/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A23403G CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_417398
 2020-03-11 2020-03-25
 Australia hCoV-19/Australia/NSW40/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- G1397A C2113T A9483G G11083T C18928T A19974G T28688C G29374A CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_417405
 2020-03-11 2020-03-25
 Australia hCoV-19/Australia/NSW52/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- G11083T C14805T T17247C G26144T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_417406
 2020-03-11 2020-03-25
 Australia hCoV-19/Australia/NSW53/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- A1079C G1397A T7225C C9319T G11083T C19862T T27384C T28688C CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_417458 MT582487
 2020-03-11 2020-03-26
 Germany SARS-CoV-2/human/DEU/NRW-13/2020
 C241T C3037T C14408T A23403G GGG28881AAC G29540T

EPI_ISL_417459 MT582486
 2020-03-11 2020-03-26
 Germany SARS-CoV-2/human/DEU/NRW-14/2020
 G1440A G2891A

EPI_ISL_417460 MT582485
 2020-03-11 2020-03-26
 Germany SARS-CoV-2/human/DEU/NRW-15/2020
 C241Y T514Y C1059Y C3037Y C14408Y C17410T A23403R G25563K G29422K

EPI_ISL_417461 MT582484
 2020-03-11 2020-03-26
 Germany SARS-CoV-2/human/DEU/NRW-16/2020
 G1440A G2891A

EPI_ISL_417462 MT582483
 2020-03-11 2020-03-26
 Germany SARS-CoV-2/human/DEU/NRW-17/2020
 G1440A G2891A

EPI_ISL_417690
 2020-03-11 2020-03-27
 Iceland hCoV-19/Iceland/125/2020
 C218T C241T C1059T C1302T C3037T G8911T C14408T T14907G A23403G G25563T G29553A

EPI_ISL_417691
 2020-03-11 2020-03-27
 Iceland hCoV-19/Iceland/111/2020
 C241T C3037T C14408T A23403G

EPI_ISL_417722
 2020-03-11 2020-03-27
 Iceland hCoV-19/Iceland/110/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_417748
 2020-03-11 2020-03-27
 Iceland hCoV-19/Iceland/109/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_417770
 2020-03-11 2020-03-27
 Iceland hCoV-19/Iceland/112/2020
 C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_417779
 2020-03-11 2020-03-27
 Iceland hCoV-19/Iceland/106/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_417783
 2020-03-11 2020-03-27
 Iceland hCoV-19/Iceland/123/2020
 C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_417871
 2020-03-11 2020-03-27
 Iceland hCoV-19/Iceland/9/2020
 C8782T T9445C C17747T A17858G A24694T T28144C G29140T

EPI_ISL_417924
 2020-03-11 2020-03-27
 Colombia hCoV-19/Colombia/INS-79256/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17470T C26088T T28144C G28985T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417956
 2020-03-11 2020-03-27
 Spain hCoV-19/Spain/Madrid_H5_34/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A20268G A23403G ACCACACAAGGCAGATGGGCTATATAAACGTTTTC29544- G29734C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_418002
 2020-03-11 2020-03-28
 Portugal hCoV-19/Portugal/PT0017/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_418211
 2020-03-11 2020-03-29
 Senegal hCoV-19/Senegal/082/2020
 C241T C3037T C14408T A23403G G27261T

EPI_ISL_418212
 2020-03-11 2020-03-29
 Senegal hCoV-19/Senegal/087/2020
 C241T C3037T C14408T A23403G G27261T

EPI_ISL_418324
 2020-03-11 2020-03-11
 Canada hCoV-19/Canada/ON_PHL3318/2020
 A1- G1397A C9693T G11083T G20887A C21627T T28688C C28830T G29742T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418332
 2020-03-11 2020-03-11
 Canada hCoV-19/Canada/ON_PHL0052/2020
 A1- C8782T C17747T A17858G C18060T C21614T A24694T G27478T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418347
 2020-03-11 2020-03-11
 Canada hCoV-19/Canada/ON_PHL3741/2020
 A1- C241T C2416T C3037T C14408T A23403G G25563T A29413G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418352
 2020-03-11 2020-03-11
 Canada hCoV-19/Canada/ON_PHL5672/2020
 A1- C241T C1059T C3037T C14408T A23403G G25563T G29422T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418360
 2020-03-11 2020-03-11
 Canada hCoV-19/Canada/ON_PHL3692/2020
 A1- C241T C1059T C3037T C14408T A18702T A23403G G25563T G28373T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418363
 2020-03-11 2020-03-11
 Canada hCoV-19/Canada/ON_PHL3695/2020
 A1- C241T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418370
 2020-03-11 2020-03-11
 Canada hCoV-19/Canada/ON_PHL0654/2020
 A1- C241T C3037T C3373A C9733T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418374
 2020-03-11 2020-03-11
 Canada hCoV-19/Canada/ON_PHL4232/2020
 A1- C241T C1059T C3037T C14408T T18212A A23403G G23593A A23597T T23600C G25563T G28368A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418669
 2020-03-11 2020-03-30
 United Kingdom hCoV-19/England/20116022902/2020
 T586C C5974T C11074T G11083T G13627T C14805T C15540T G26144T A28338G C28961T

EPI_ISL_418670
 2020-03-11 2020-03-30
 United Kingdom hCoV-19/England/20116025603/2020
 ATG1605- C25207T A25594C

EPI_ISL_418816
 2020-03-11 2020-03-31
 Canada hCoV-19/Canada/BC_0443574/2020
 C8782T C17747T A17858G C18060T A24694T T28144C

EPI_ISL_418831
 2020-03-11 2020-03-31
 Canada hCoV-19/Canada/BC_5275718/2020
 C241T C3037T C14408T C18348T C18877T A23403G G25563T

EPI_ISL_418832
 2020-03-11 2020-03-31
 Canada hCoV-19/Canada/BC_5282984/2020
 C228T G1397A C5467T G9479T A9514G G11083T G26720C T28688C T28835C G29742T

EPI_ISL_418833
 2020-03-11 2020-03-31
 Canada hCoV-19/Canada/BC_5306970/2020
 C241T C3037T C14408T C18877T A23403G G25563T

EPI_ISL_418834
 2020-03-11 2020-03-31
 Canada hCoV-19/Canada/BC_5522039/2020
 A187G C241T C3037T C14408T C17676T C21721T A23403G

EPI_ISL_418835
 2020-03-11 2020-03-31
 Canada hCoV-19/Canada/BC_5979789/2020
 C241T C3037T C6762T C14408T C18348T C18877T A23403G G25563T

EPI_ISL_418841
 2020-03-11 2020-03-31
 Canada hCoV-19/Canada/BC_6981299/2020
 C8782T G14197A C17747T A17858G C18060T T28144C

EPI_ISL_418842
 2020-03-11 2020-03-31
 Canada hCoV-19/Canada/BC_6997898/2020
 A187G C241T C3037T C14408T A23403G

EPI_ISL_418845
 2020-03-11 2020-03-31
 Canada hCoV-19/Canada/BC_7515663/2020
 C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T

EPI_ISL_418853
 2020-03-11 2020-03-31
 Canada hCoV-19/Canada/BC_8894200/2020
 C8782T A17858G C18060T T28144C

EPI_ISL_418854
 2020-03-11 2020-03-31
 Canada hCoV-19/Canada/BC_8896915/2020
 C8782T A17858G C18060T T25468C T28144C

EPI_ISL_418855
 2020-03-11 2020-03-31
 Canada hCoV-19/Canada/BC_8897642/2020
 C8782T A17858G C18060T T28144C

EPI_ISL_418965 MT334541
 2020-03-11 2020-03-31
 United States SARS-CoV-2/human/USA/UT-00023/2020
 A1- C241T C3037T C14408T C16289T A23403G G25429T C29870A

EPI_ISL_418967 MT334542
 2020-03-11 2020-03-31
 United States SARS-CoV-2/human/USA/UT-00025/2020
 C241T C1059T C3037T C14408T A23403G G25563T C29870A

EPI_ISL_419301 LC547523
 2020-03-11 2020-04-02
 Japan hCoV-19/Japan/P4-1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C3037T C14408T A23403G GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_419573
 2020-03-11 2020-04-02
 Luxembourg hCoV-19/Luxembourg/LNS1874423/2020
 C241T C3037T G10368A C14408T G18844R A20268G A23403G G29734C TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_419587
 2020-03-11 2020-04-02
 Luxembourg hCoV-19/Luxembourg/LNS4691488/2020
 C241T C829Y C3037T G11858A C14408T C15324T A23403G GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_419590
 2020-03-11 2020-04-02
 Luxembourg hCoV-19/Luxembourg/LNS5032431/2020
 C241T C1059T C3037T C14408T A23403G G25563T A27020R AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_419606
 2020-03-11 2020-04-02
 Luxembourg hCoV-19/Luxembourg/LNS9862689/2020
 C241T C1059T C3037T C14408T A23403G G25563T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_419666
 2020-03-11 2020-04-03
 Austria hCoV-19/Austria/CeMM0013/2020
 C241T C1059T C3037T C14408T G19962R A23403G G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_419711 MT322407
 2020-03-11 2020-04-08
 United States SARS-CoV-2/human/USA/VA-DCLS-0017/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C8782T C17747T A17858G C18060T T28144C G29868A C29870A

EPI_ISL_419713 MT322411
 2020-03-11 2020-04-08
 United States SARS-CoV-2/human/USA/VA-DCLS-0021/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- A361G C8782T G22468T T25559G T28144C G28878A G29742A

EPI_ISL_419756 MT450953
 2020-03-11 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC38/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C10350T C14408T C15277T C15324T G20887R A23403G

EPI_ISL_419757 MT450954
 2020-03-11 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC39/2020
 A1- C21T C241T C1059T C3037T A4015G G4951A C14408T A23403G G25563T

EPI_ISL_419758 MT450955
 2020-03-11 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC40/2020
 A1- C8782T T10771C C17747T A17858G C18060T T28144C G29751T

EPI_ISL_419760 MT450956
 2020-03-11 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC41/2020
 ATTA1- C8782T T10771C C17747T A17858G C18060T T28144C C28315T G29751T

EPI_ISL_419761 MT450957
 2020-03-11 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC42/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- A30T C6312A G11083T C13730T C23929T C28311T

EPI_ISL_419763 MT450958
 2020-03-11 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC43/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C5457A C14408T A23403G GGG28881AAC

EPI_ISL_419767 MT450959
 2020-03-11 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC44/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23403G A26530G

EPI_ISL_419802 MT450960
 2020-03-11 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC45/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_419816 MT450961
 2020-03-11 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC46/2020
 ATTA1- A1646G C8782T C17747T A17858G C18060T T28144C

EPI_ISL_420028 MT322408
 2020-03-11 2020-04-08
 United States SARS-CoV-2/human/USA/VA-DCLS-0018/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C37S C8782T C17747T A17858G C18060T T28144C C29870A

EPI_ISL_420029 MT322409
 2020-03-11 2020-04-08
 United States SARS-CoV-2/human/USA/VA-DCLS-0019/2020
 ATT1- C8782T C17747T A17858G C18060T T28144C C29870A

EPI_ISL_420109
 2020-03-11 2020-04-05
 Singapore hCoV-19/Singapore/32/2020
 ATTAAAGGTTT1- TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_420110
 2020-03-11 2020-04-05
 Singapore hCoV-19/Singapore/33/2020/P1
 ATTAAAGGTTTA1- A4473G TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_420125
 2020-03-11 2020-04-05
 Spain hCoV-19/Spain/Valencia41/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G21786A A23403G G29009A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420146
 2020-03-11 2020-04-05
 Norway hCoV-19/Norway/1955/2020
 ATTAAAGGT1- C241T C3037T C14408T A23403G A26530G

EPI_ISL_420899
 2020-03-11 2020-04-07
 Germany hCoV-19/Germany/BAV-V2010492/2020
 C241T C3037T C14408T A23403G C27046T C28344A GGG28881AAC

EPI_ISL_421351 MT370892
 2020-03-11 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08122/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C3037T G10265A C14408T A23403G GGG28881AAC AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_421500
 2020-03-11 2020-04-08
 France hCoV-19/France/HF2306/2020
 C241T C1059T C3037T T3710C C10582T C14408T A23403G G25563T G29705T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_422643 LR877943
 2020-03-11 2020-04-11
 Netherlands hCoV-19/Netherlands/Gelderland_7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4255T C14408T A23403G A26530G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422676 LR877723
 2020-03-11 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_132/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- C27920T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422677 LR877725
 2020-03-11 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_133/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- C25511T C29719T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422678 LR877731
 2020-03-11 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_134/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1380T C3037T C14408T A23403G A24862G A26871C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422840 LR878156
 2020-03-11 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_80/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- C17410T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422842 LR878171
 2020-03-11 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_82/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- C2485T C17410T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422843 LR878184
 2020-03-11 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_83/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- C17410T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422866 LR878115
 2020-03-11 2020-04-11
 Netherlands hCoV-19/Netherlands/NoordBrabant_70/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C20647T G22661T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422867 LR878123
 2020-03-11 2020-04-11
 Netherlands hCoV-19/Netherlands/NoordBrabant_71/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C20647T G22661T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422873 LR877741
 2020-03-11 2020-04-11
 Netherlands hCoV-19/Netherlands/NoordBrabant_77/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422875 LR877732
 2020-03-11 2020-04-11
 Netherlands hCoV-19/Netherlands/NoordBrabant_80/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- C17410T T21158C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422876 LR877735
 2020-03-11 2020-04-11
 Netherlands hCoV-19/Netherlands/NoordBrabant_81/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422897 LR878128
 2020-03-11 2020-04-11
 Netherlands hCoV-19/Netherlands/Utrecht_20/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C20647T G22661T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_424672
 2020-03-11 2020-04-13
 Mexico hCoV-19/Mexico/Puebla-InDRE_05/2020
 C241T A1308G C3037T C14408T C17639T A20268G A23403G G27506T C28638T A29700G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_425212
 2020-03-11 2020-04-14
 Spain hCoV-19/Spain/Valencia88/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C29144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425213
 2020-03-11 2020-04-14
 Spain hCoV-19/Spain/Valencia89/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425466
 2020-03-11 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10DEEA/2020
 ATG1605- C20270T

EPI_ISL_425672
 2020-03-11 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR13/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C20936T C23086T A23403G C27046T GGG28881AAC GCTAGAATG28895- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425758
 2020-03-11 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR29/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A761G C1059T C3037T A6825C C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425821
 2020-03-11 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB015/2020
 C241T A1515G C14805T A17799G

EPI_ISL_425822
 2020-03-11 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB016/2020
 C241T C1059T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_425836
 2020-03-11 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB030/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_425842
 2020-03-11 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB036/2020
 C241T C1059T C3037T C14408T A23403G

EPI_ISL_425844
 2020-03-11 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB038/2020
 C3037T C14408T A23403G GGG28881AAC

EPI_ISL_425847
 2020-03-11 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB042/2020
 C241T C3037T C14408T G16075T T18689A A23403G C27046T GGG28881AAC

EPI_ISL_426294
 2020-03-11 2020-04-15
 United States hCoV-19/USA/NY-Wadsworth-13468-02/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T G1738T C3037T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426513
 2020-03-11 2020-04-17
 United States hCoV-19/USA/AZ-TG268903/2020
 C8782T T11194C C15240T C17747T A17858G C18060T C21774T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426514
 2020-03-11 2020-04-17
 United States hCoV-19/USA/AZ-TG268905/2020
 C241T C379A C1059T C1267T C3037T T7672C C14408T C22802G A23403G G25563T A29871C AAAAAAAAAAAAAAAAAAAAAA29882-

EPI_ISL_427300
 2020-03-11 2020-04-18
 Brazil hCoV-19/Brazil/RJ-477/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C14408T A23403G A26927G GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_427301
 2020-03-11 2020-04-18
 Brazil hCoV-19/Brazil/RJ-477i/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T A23403G A26927G GGG28881AAC GAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29781-

EPI_ISL_428355
 2020-03-11 2020-04-20
 France hCoV-19/France/IDF2251/2020
 T10A C241T C1059T C3037T T6175C C10582T C14408T A23403G C23707T G25563T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_428356
 2020-03-11 2020-04-20
 France hCoV-19/France/IDF2252/2020
 C241T C1059T C3037T C10582T C14408T A23403G C23707T G25563T GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_428357
 2020-03-11 2020-04-20
 France hCoV-19/France/IDF2253/2020
 C241T C1059T C3037T C10582T C14408T A23403G C23707T G25563T AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_428677
 2020-03-11 2020-04-21
 Spain hCoV-19/Spain/Madrid_LP20_2327/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C8782T T9477A G12522A C14805T G25979T T28144C C28657T C28863T TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856C

EPI_ISL_428681
 2020-03-11 2020-04-21
 Spain hCoV-19/Spain/Madrid_LP27_2548/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A20268G A23403G TGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29840CT

EPI_ISL_428682
 2020-03-11 2020-04-21
 Spain hCoV-19/Spain/Madrid_LP30_2226/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C7279T C14408T A20268G A23403G -29826T AATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29849-

EPI_ISL_428703
 2020-03-11 2020-04-21
 Spain hCoV-19/Spain/Madrid_H12_3304/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428704
 2020-03-11 2020-04-21
 Spain hCoV-19/Spain/Madrid_H12_3405/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T12364A A19719T C26088T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428860
 2020-03-11 2020-04-22
 Russia hCoV-19/Russia/Moscow-62505/2020
 C241T C3037T C14408T C18568T A23403G A26530G

EPI_ISL_428861
 2020-03-11 2020-04-22
 Russia hCoV-19/Russia/Moscow-62501/2020
 C241T C3037T C14408T G18310A A23403G A26530G

EPI_ISL_428862
 2020-03-11 2020-04-22
 Russia hCoV-19/Russia/Moscow-62506/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_428863
 2020-03-11 2020-04-22
 Russia hCoV-19/Russia/Moscow-62508/2020
 C241T C3037T C10208T C14408T A23403G G25459T GGG28881AAC

EPI_ISL_428864
 2020-03-11 2020-04-22
 Russia hCoV-19/Russia/Moscow-62502/2020
 C241T C3037T C10208T C14408T A23403G G25459T GGG28881AAC

EPI_ISL_428865
 2020-03-11 2020-04-22
 Russia hCoV-19/Russia/Lipetsk-62704/2020
 C241T C2939T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_428866
 2020-03-11 2020-04-22
 Russia hCoV-19/Russia/Lipetsk-62707/2020
 C241T C3037T C14408T A19126G A23403G C27046T GGG28881AAC

EPI_ISL_428867
 2020-03-11 2020-04-22
 Russia hCoV-19/Russia/Krasnodar-63401/2020
 C241T C3037T C14408T A23403G A23618G C27046T GGG28881AAC

EPI_ISL_429115
 2020-03-11 2020-04-23
 Sweden hCoV-19/Sweden/20-08142/2020
 G1440A G2891A C7011T

EPI_ISL_429117
 2020-03-11 2020-04-23
 Sweden hCoV-19/Sweden/20-08145/2020
 C241T C3037T C14408T G17140T A23403G C27046T GGG28881AAC

EPI_ISL_429118
 2020-03-11 2020-04-23
 Sweden hCoV-19/Sweden/20-08146/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429119
 2020-03-11 2020-04-23
 Sweden hCoV-19/Sweden/20-08148/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_429120
 2020-03-11 2020-04-23
 Sweden hCoV-19/Sweden/20-08149/2020
 C241T C3037T G11083T A13947T C14408T A23403G GGG28881AAC

EPI_ISL_429121
 2020-03-11 2020-04-23
 Sweden hCoV-19/Sweden/20-08151/2020
 C241T C1059T C3037T C14408T G17721T A23403G G25563T C27294T

EPI_ISL_429122
 2020-03-11 2020-04-23
 Sweden hCoV-19/Sweden/20-08155/2020
 C241T C3037T A13947T C14408T A23403G GGG28881AAC

EPI_ISL_429282
 2020-03-11 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH24/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429283
 2020-03-11 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH25/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429284
 2020-03-11 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH26/2020
 C241T C3037T C14408T A20268G A23403G G29734C

EPI_ISL_429285
 2020-03-11 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH27/2020
 C241T C1059T C1302T C3037T C14408T A23403G G25563T C25658T

EPI_ISL_429287
 2020-03-11 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH29/2020
 C241T C3037T C14408T A23403G C23575T G23587C

EPI_ISL_429406
 2020-03-11 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI213/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429407
 2020-03-11 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI215/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429517
 2020-03-11 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI419/2020
 C241T C1059T C3037T G5518T C14408T C15989T A23403G G25563T C29546T

EPI_ISL_429518
 2020-03-11 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI420/2020
 C241T C3037T G10870T C14408T C23086T A23403G C27046T GGG28881AAC

EPI_ISL_429520
 2020-03-11 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI423/2020
 C241T C1059T C3037T C14408T A15189G A23403G G25563T C28171T

EPI_ISL_429521
 2020-03-11 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI424/2020
 C241T C1059T C1302T A2444G C3037T C14408T A23403G G25563T

EPI_ISL_430282
 2020-03-11 2020-04-26
 United States hCoV-19/USA/WA-S244/2020
 C8782T C17747T A17858G C18060T C26735T C27577T T28144C

EPI_ISL_430289 MT632570
 2020-03-11 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S251/2020
 C6310T C8782T C17747T A17858G C18060T G27327T T28144C

EPI_ISL_430719
 2020-03-11 2020-04-27
 Spain hCoV-19/Spain/Madrid-LP29/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C217T TCAAAGGGATTGTACAGAAAGTGTGTT2402- A2443G -3852A TT4273GA AGAGTGT6876- TCTACTCAACCGCTGCTTTAGGTGTTTTAATGTCTAATTTAGGCATGCCTTCTTACTGTACTGGTTACAGAGAAGGCTATTTGAACTCTACTAATGTCACTATTGCAACCTACTGTACTGGTTCTATACCTTGTAGTGTTTGTCTT6996- G11083T A21551T G26144T ATTGTGTGCGTACTGCTGCAATATTGTTAACGTGAGTCTTGTAAAACCTTCTTTTTACGTTTACTCTCGTGTTAAAAATCTGAATTCTTCTAGAGTTCCTGATCTTCTGG26358C C27883T AATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29849-

EPI_ISL_430721
 2020-03-11 2020-04-27
 Spain hCoV-19/Spain/Madrid-LP33/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T G7393T C14408T G15327T A20268G A23403G -29826T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_430848
 2020-03-11 2020-04-28
 Sweden hCoV-19/Sweden/20-08144/2020
 G1440A G2891A C7011T G11083T

EPI_ISL_430849
 2020-03-11 2020-04-28
 Sweden hCoV-19/Sweden/20-08147/2020
 C241T C1059T C3037T A12393G C14408T G20419T A23403G G25563T C27294T

EPI_ISL_430850
 2020-03-11 2020-04-28
 Sweden hCoV-19/Sweden/20-08150/2020
 C241T C1059T C3037T C14408T G17721T A23403G G25563T C27294T

EPI_ISL_430851
 2020-03-11 2020-04-28
 Sweden hCoV-19/Sweden/20-08152/2020
 C241T C1059T C3037T C14408T G20419T A23403G G25563T C27294T

EPI_ISL_430852
 2020-03-11 2020-04-28
 Sweden hCoV-19/Sweden/20-08154/2020
 G600A G1820A A2480G C2558T T8599C G11083T C14805T C14925T G26144T

EPI_ISL_430853
 2020-03-11 2020-04-28
 Sweden hCoV-19/Sweden/20-08167/2020
 C241T C1059T A2219G C3037T G3340T C14408T C15237T C23185T A23403G G25563T

EPI_ISL_430867 MT412252
 2020-03-11 2020-04-28
 United States SARS-CoV-2/human/USA/WA-UW-517/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- ACC31TTY C36T T7084C C8782T C17747T A17858G C18060T C21410T T28144C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_430870 MT412253
 2020-03-11 2020-04-28
 United States SARS-CoV-2/human/USA/WA-UW-518/2020
 ATTAAAGGTTTAT1- A14T CCCAGGTAACAAACCAA19- C36T C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_430878 MT412246
 2020-03-11 2020-04-28
 United States SARS-CoV-2/human/USA/WA-UW-525/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C8782T A14604G C17747T A17858G C18060T C21911T T28144C AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_430879 MT412242
 2020-03-11 2020-04-28
 United States SARS-CoV-2/human/USA/UNKNOWN-UW-526/2020
 TAAAGGTTTATACCTTCCCAGGTAACAAA3- C36T C241T C1059T C3037T C14408T A23403G G25563T -29904AAAAAAAAAAA

EPI_ISL_430882 MT412245
 2020-03-11 2020-04-28
 United States SARS-CoV-2/human/USA/UNKNOWN-UW-536/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- C36T C241T C1059T C3037T C14408T G15760A A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_431102
 2020-03-11 2020-04-29
 India hCoV-19/India/GMC-KN318/2020
 C241T C3037T C14408T A23403G

EPI_ISL_434471
 2020-03-11 2020-04-29
 Greece hCoV-19/Greece/149/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- G1440A G2891A TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_434473
 2020-03-11 2020-04-29
 Greece hCoV-19/Greece/136/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G G24236T GGG28881AAC TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_434474
 2020-03-11 2020-04-29
 Greece hCoV-19/Greece/137/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T A6646G C14408T A23403G GGG28881AAC TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_434479
 2020-03-11 2020-04-29
 Greece hCoV-19/Greece/138/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGG28881AAC TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_434737
 2020-03-11 2020-05-01
 United States hCoV-19/USA/TX-HMH028/2020
 C241T C3037T C14408T G16741T C18877T A23403G G25563T

EPI_ISL_435058
 2020-03-11 2020-05-02
 South Africa hCoV-19/South Africa/R02606/2020
 C241T C3037T T7630G T7640G T7642G T7648A T8329G C11499A G11501C C13620T C14408T A18230T A18238T A18245T C18248T A18250T A18253T A18259T A18269T A18277T A18279T A18282T A18284T G18286T A18288T A18294T GA18297TT C21595T A23403G T23437A T26631A T26651A G28895T T29604A

EPI_ISL_435136
 2020-03-11 2020-05-03
 United Arab Emirates hCoV-19/United Arab Emirates/L5621/2020
 C241T C3037T C13568T C14408T A23403G

EPI_ISL_435144
 2020-03-11 2020-05-03
 Spain hCoV-19/Spain/Madrid_LP28_2522/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T A23403G T27803C GGG28881AAC TGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29840-

EPI_ISL_435631
 2020-03-11 2020-05-05
 United States hCoV-19/USA/CA-SCCPHD-UC152/2020
 C8782T A16467G C17747T A17858G C18060T C23185T T28144C C29200T

EPI_ISL_435636
 2020-03-11 2020-05-05
 United States hCoV-19/USA/CA-SCCPHD-UC157/2020
 T9250C G9973A A13510G G29711T

EPI_ISL_435637
 2020-03-11 2020-05-05
 United States hCoV-19/USA/CA-SCCPHD-UC158/2020
 T18278C C20628T G29711T

EPI_ISL_435674
 2020-03-11 2020-05-05
 Brunei hCoV-19/Brunei/2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- A46G T286Y G2897A C6312A A9930R G11083T C13730T A14620R C18747Y C21005Y A21080W C23929T G25198R C28311T GATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29751-

EPI_ISL_435675
 2020-03-11 2020-05-05
 Brunei hCoV-19/Brunei/3/2020
 A1- G2897A C6312A A9683R G11083T C13730T C23929T C28311T ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_436804 MT439234
 2020-03-11 2020-05-06
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20189/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C14408T A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_437228
 2020-03-11 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0029/2020
 C241T C1059T C3037T C14408T A23403G G25563T C25585T

EPI_ISL_437246
 2020-03-11 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0047/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_437247
 2020-03-11 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0048/2020
 C241T C3037T C14408T A23403G C27046T C28344A GGG28881AAC

EPI_ISL_437248
 2020-03-11 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0049/2020
 C241T C1812T C3037T C14408T A23403G C27046T C28344A GGG28881AAC

EPI_ISL_437611 MT447167
 2020-03-11 2020-05-01
 Thailand SARS-CoV-2/human/THA/SI204487-NT/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- A1515G C9223T G11083T A14597G C14805T T17247C A17799G G26144T A28615G TACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29748-

EPI_ISL_437901 MT459910
 2020-03-11 2020-05-11
 Greece SARS-CoV-2/human/GRC/251_32400/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T G2229A C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_437908 MT459922
 2020-03-11 2020-05-11
 Greece SARS-CoV-2/human/GRC/264_32497/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T A23403G C28826T GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_437941
 2020-03-11 2020-05-12
 Austria hCoV-19/Austria/CeMM0071/2020
 C241T C3037T C14408T T22521K A23403G ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_437942
 2020-03-11 2020-05-12
 Austria hCoV-19/Austria/CeMM0073/2020
 C241T C1059T C3037T C14408T T22521K A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_437976
 2020-03-11 2020-05-12
 Austria hCoV-19/Austria/CeMM0119/2020
 T6163A C12923A C13430T C19366T T22521K A27379R T28110C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_437978
 2020-03-11 2020-05-12
 Austria hCoV-19/Austria/CeMM0121/2020
 C241T C1059T C3037T C14408T C19961T T22521K A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_437979
 2020-03-11 2020-05-12
 Austria hCoV-19/Austria/CeMM0123/2020
 C241T C1059T C3037T C14408T T22521K A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_437980
 2020-03-11 2020-05-12
 Austria hCoV-19/Austria/CeMM0124/2020
 C241T C1059T C3037T C14408T T22521K A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_437981
 2020-03-11 2020-05-12
 Austria hCoV-19/Austria/CeMM0125/2020
 C241T C1059T C3037T G9190T C14408T G15380T A23403G G25563T AAAAAAAAAAA29893-

EPI_ISL_437982
 2020-03-11 2020-05-12
 Austria hCoV-19/Austria/CeMM0126/2020
 C241T C3037T C3373M C6629Y C14408T T22521K A23403G G25563K GGG28881RRS TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_437983
 2020-03-11 2020-05-12
 Austria hCoV-19/Austria/CeMM0127/2020
 C241T C1059Y C3037T C3373M C14408T C14980Y G15380K A23403G G25563K GGG28881RRS AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_437984
 2020-03-11 2020-05-12
 Austria hCoV-19/Austria/CeMM0128/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_438026
 2020-03-11 2020-05-12
 Austria hCoV-19/Austria/CeMM0184/2020
 C241T C1059T C3037T C14408T A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_438028
 2020-03-11 2020-05-12
 Italy hCoV-19/Austria/CeMM0186/2020
 C241T C3037T G3994T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_438230
 2020-03-11 2020-05-12
 United States hCoV-19/USA/DC-HP00072/2020
 A2480G C2558T A4912C G11083T C14805T C17010A C21575T G26144T

EPI_ISL_438234
 2020-03-11 2020-05-12
 United States hCoV-19/USA/MD-HP00076/2020
 T490A C3177T C6040T C8782T C8950T G12478A T18736C C24034T T26729C G28077C T28144C C28896G C29451T A29700G

EPI_ISL_441412
 2020-03-11 2020-05-12
 United Kingdom hCoV-19/Northern Ireland/NIRE-1023F5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC

EPI_ISL_443195
 2020-03-11 2020-05-12
 Singapore hCoV-19/Singapore/103/2020
 T76W T78K C6312A C8139T G11083T C13730T T14696W C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_444817
 2020-03-11 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-1235/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_444818
 2020-03-11 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-1238/2020
 C241T C1059T C3037T C3743T C14408T A23403G G25563T

EPI_ISL_444819
 2020-03-11 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-1239/2020
 C241T C1059T C3037T C14408T G15380T A23403G G25563T

EPI_ISL_444820
 2020-03-11 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-1241/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_444822
 2020-03-11 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-1243/2020
 G1440A G2891A C7011T G29645T

EPI_ISL_444823
 2020-03-11 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-1244/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_444824
 2020-03-11 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-1245/2020
 G1440A G2891A C7011T

EPI_ISL_444825
 2020-03-11 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-1246/2020
 C241T C3037T C13499T C14408T A23403G C24096T G25266T C27046T GGG28881AAC

EPI_ISL_444826
 2020-03-11 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-1248/2020
 C241T C1059T C3037T C14408T G23401T A23403G G25563T

EPI_ISL_444827
 2020-03-11 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-1249/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_444828
 2020-03-11 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-1250/2020
 T514C ATG1605- C21648T C23758T C25517T

EPI_ISL_444829
 2020-03-11 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-1252/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_444831
 2020-03-11 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-1257/2020
 C241T C1059T C3037T C14408T G17808C A23403G G25563T

EPI_ISL_444832
 2020-03-11 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-1260/2020
 C241T C3037T C14408T A23403G G25563T

EPI_ISL_444890
 2020-03-11 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-756/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_444891
 2020-03-11 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-757/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_444994
 2020-03-11 2020-05-14
 United States hCoV-19/USA/CA_NHRC_01/2020
 ATTAAAGGTTTAT1- C8782T C17747T A17858G C18060T A24694T T28144C

EPI_ISL_445221
 2020-03-11 2020-05-15
 Sweden hCoV-19/Sweden/20-05444/2020
 C241T C3037T C14195A C14408T A23403G

EPI_ISL_445254
 2020-03-11 2020-05-15
 Chile hCoV-19/Chile/Santiago_11/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C14408T A23403G C29144T TCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29834C

EPI_ISL_445258
 2020-03-11 2020-05-15
 Chile hCoV-19/Chile/Santiago_15/2020
 T2C A4T C8782T T9477A C14805T G25979T T28144C C28657T A28692R C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_445260
 2020-03-11 2020-05-15
 Chile hCoV-19/Chile/Santiago_17/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C8782T T9477A A12506R C14805T C21812T G25979T C26735T T28144C C28657T C28863T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_445261
 2020-03-11 2020-05-15
 Chile hCoV-19/Chile/Santiago_18/2020
 ATTAAAGGTTTATACCT1- C241T C3037T C6317A C14408T A20268G A23403G ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_445262
 2020-03-11 2020-05-15
 Chile hCoV-19/Chile/Santiago_19/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T G1085T C3037T C14408T A23403G CTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29831-

EPI_ISL_445263
 2020-03-11 2020-05-15
 Chile hCoV-19/Chile/Santiago_20/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T A7636R G9136R C14408T A20268G A23403G TCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29834CT

EPI_ISL_445265
 2020-03-11 2020-05-15
 Chile hCoV-19/Chile/Santiago_22/2020
 -2ACACAGTTTATGATCCTTTGCAACCTGAA -5GACTCATTCAAGGAGGAGTT C241T C3037T C14408T A20268G A23403G CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_445332
 2020-03-11 2020-05-15
 Chile hCoV-19/Chile/Chillan_3/2020
 ATTAAAGGTTTATACC1- C241T C3037T T7034A C14408T A20268G C21846T A23403G CA29838TG GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_447253
 2020-03-11 2020-05-17
 Taiwan hCoV-19/Taiwan/TSGH-27/2020
 T7876C AA29902GTCCGAAAAAAAAAACAAAAGATAAAATTTAGTAAAGAGGAGATAGAAAAAAAAAACACGAC

EPI_ISL_447635 MT459864
 2020-03-11 2020-05-11
 Greece SARS-CoV-2/human/GRC/149_32357/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- G1440A G2891A ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_447649 MT459912
 2020-03-11 2020-05-11
 Greece SARS-CoV-2/human/GRC/254_32422/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_447650 MT459913
 2020-03-11 2020-05-11
 Greece SARS-CoV-2/human/GRC/255_32525/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_447652 MT459920
 2020-03-11 2020-05-11
 Greece SARS-CoV-2/human/GRC/262_32443/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_447653 MT459921
 2020-03-11 2020-05-11
 Greece SARS-CoV-2/human/GRC/263_32477/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_450088
 2020-03-11 2020-05-20
 United States hCoV-19/USA/NY-PV09408/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T C1059T C3037T C14178T C14408T A23403G G25563T TCTTGTAGGCTTGATGTGGCTCAGCTACTTCATTGCT26780- AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450089
 2020-03-11 2020-05-20
 United States hCoV-19/USA/NY-PV09409/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450091
 2020-03-11 2020-05-20
 United States hCoV-19/USA/NY-PV09411/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C6720T C8782T C17747T A17858G C18060T T28144C AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450092
 2020-03-11 2020-05-20
 United States hCoV-19/USA/NY-PV09412/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C9491T C14408T A23403G G25563T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_450108
 2020-03-11 2020-05-20
 United States hCoV-19/USA/NY-PV09431/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T C3037T C14408T G14580T A23403G AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450110
 2020-03-11 2020-05-20
 United States hCoV-19/USA/NY-PV09433/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C8782T C17747T A17858G C18060T T28144C AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450351
 2020-03-11 2020-05-20
 Norway hCoV-19/Norway/Trondheim-E9/2020
 ATTAAAGGTTTATACCTTCC1- C241T C313T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAA29889-

EPI_ISL_450352
 2020-03-11 2020-05-20
 Norway hCoV-19/Norway/Trondheim-E10/2020
 ATTAAAGGTTTATACCTTCC1- C241T C3037T A4761M C14408T A23403G A26530G C28603T AAAAAAAAAAAAAAA29889-

EPI_ISL_450515
 2020-03-11 2020-05-21
 Lebanon hCoV-19/Lebanon/S9_764/2020
 CT40AC C884T G1397A G8653T G11083T G22021T C25611T T28688C G29742T

EPI_ISL_450601 MT509669
 2020-03-11 2020-05-21
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20322/2020
 C241T C1059T C3037T C14408T A23403G G25563T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_450792 MT507793
 2020-03-11 2020-05-22
 Jamaica SARS-CoV-2/homo sapien/JAM/JM-CDC-0078/2020
 G6589T -11075TTT G11083T C14805T T17247C G26144T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_450794 MT507272
 2020-03-11 2020-05-22
 Jamaica SARS-CoV-2/human/JAM/JM-CDC-4376/2020
 C6312A G11083T C11416Y C13730Y C19524T C23929T C28311T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_452001
 2020-03-11 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-119/2020
 C241T C3037T C14408T A23403G

EPI_ISL_452002
 2020-03-11 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-121/2020
 C241T C1392T C3037T C14408T A20268G A23403G C24026T C27012T

EPI_ISL_452003
 2020-03-11 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-122/2020
 C241T C1059T C1302T C3037T C14408T A23403G G25563T

EPI_ISL_452004
 2020-03-11 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-123/2020
 C241T T658C C3037T C14408T C21622T A23403G A24862G C28629T C29253T

EPI_ISL_452005
 2020-03-11 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-124/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_452007
 2020-03-11 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-126/2020
 C241T C1059T C3037T C14408T G15380T A23403G G25563T

EPI_ISL_452008
 2020-03-11 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-127/2020
 C241T C1059T C3037T A12151G C14408T A23403G G25563T

EPI_ISL_452009
 2020-03-11 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-128/2020
 

EPI_ISL_452010
 2020-03-11 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-129/2020
 C241T C3037T C14408T A20268G A23403G G29734C

EPI_ISL_452012
 2020-03-11 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-131/2020
 C241T C1059T C1302T C3037T T10573C C11344T C14408T A23403G G25563T G26842A

EPI_ISL_452013
 2020-03-11 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-134/2020
 C218T C241T C1059T C1302T C3037T C14408T A23403G G25563T

EPI_ISL_452014
 2020-03-11 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-135/2020
 C241T C1059T C1302T C3037T C14408T A20541G A23403G G25563T

EPI_ISL_452015
 2020-03-11 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-136/2020
 C241T C1059T C3037T C14408T G15380T A23403G G25563T

EPI_ISL_452016
 2020-03-11 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-137/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_452017
 2020-03-11 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-138/2020
 C241T C1059T C3037T C14408T G15380T G19480A A23403G G25563T

EPI_ISL_452018
 2020-03-11 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-139/2020
 C241T C1059T C3037T C14408T C20762T A23403G G25563T

EPI_ISL_452019
 2020-03-11 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-140/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_452020
 2020-03-11 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-141/2020
 C241T C1059T C1302T C3037T C14408T A23403G G25563T

EPI_ISL_452021
 2020-03-11 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-142/2020
 C241T C1059T C1302T C3037T C14408T A23403G G25563T

EPI_ISL_452022
 2020-03-11 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-143/2020
 C241T C1059T C1302T C3037T C14408T A23403G G25563T

EPI_ISL_452023
 2020-03-11 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-144/2020
 G1440A G2891A C7011T G25593C

EPI_ISL_452024
 2020-03-11 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-145/2020
 C1059T C3037T C14408T A23403G G25563T

EPI_ISL_452115 MT512443
 2020-03-11 2020-05-26
 United States SARS-CoV-2/human/USA/TX-CDC-8001/2020
 T490A C3177T C8782T T18736Y C24034T C26204T T26729C G26775T G28077C T28144C A29700G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_452701
 2020-03-11 2020-05-27
 Spain hCoV-19/Spain/COV000847/2020
 C8782T T9477A C14805T C16375Y C16949Y G25979T T28144C C28657T C28863T C29870A

EPI_ISL_452703
 2020-03-11 2020-05-27
 Spain hCoV-19/Spain/COV000843/2020
 A5212G C8782T T9477A C14805T G25599T G25979T T28144C C28657T C28863T

EPI_ISL_454007
 2020-03-11 2020-05-28
 Portugal hCoV-19/Portugal/PT0291/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- C241T C3037T C14408T A23403G GGG28881AAC CGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29754-

EPI_ISL_454222
 2020-03-11 2020-05-28
 Portugal hCoV-19/Portugal/PT0498/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- A2480G C2558T G11083T C14805T G26144T A29684G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454758
 2020-03-11 2020-05-29
 Netherlands hCoV-19/Netherlands/Utrecht_10009/2020
 ATTAAAGGTTTAT1- C241T C3037T G11761T C14408T A23403G C27046T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_454786
 2020-03-11 2020-05-29
 Netherlands hCoV-19/Netherlands/Utrecht_10037/2020
 ATTAAAGGTTTATACCTTC1- C241T C3037T C14408T C20647T G22661T A23403G A24862G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_454902
 2020-03-11 2020-05-29
 Sweden hCoV-19/Sweden/20-50294/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T

EPI_ISL_455333
 2020-03-11 2020-05-29
 Spain hCoV-19/Spain/Galicia202230/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T C3037T C14408T A20268G A23403G T29832A T29834C CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

EPI_ISL_455334
 2020-03-11 2020-05-29
 Spain hCoV-19/Spain/Galicia202282/2020
 A1- C241T C3037T C7604T C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_455335
 2020-03-11 2020-05-29
 Spain hCoV-19/Spain/Galicia202297/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T C3037T C14408T A20268G A21395T A23403G TGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29829-

EPI_ISL_455344
 2020-03-11 2020-05-29
 Spain hCoV-19/Spain/Melilla202020/2020
 ATTAAAGGTTTATACC1- C241T C3037T C5884T A8449G G8470T C14408T A20268G A23403G GAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29703-

EPI_ISL_455345
 2020-03-11 2020-05-29
 Spain hCoV-19/Spain/Melilla202134/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T A8537T C14408T G21225T T21272C A23403G G25563T G28620T TAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29823-

EPI_ISL_455346
 2020-03-11 2020-05-29
 Spain hCoV-19/Spain/Melilla202135/2020
 ATTAAAGGTTTATACC1- C241T C3037T C14408T C17639T A20268G A21356G A23403G C28638T TTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29820-

EPI_ISL_455439
 2020-03-11 2020-05-29
 Mexico hCoV-19/Mexico/CDMX-InDRE_15/2020
 ATTA1- C8782T C17747T A17858G C18060T C21707T C23422T A24694T T28144C TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_455842
 2020-03-11 2020-06-01
 Sweden hCoV-19/Sweden/20-08156/2020
 C241T C1059T C3037T C12885T C14408T A23403G G25563T

EPI_ISL_455903
 2020-03-11 2020-06-01
 Sweden hCoV-19/Sweden/20-50279/2020
 T239A G1440A G2891A C7011T G25593C

EPI_ISL_455910
 2020-03-11 2020-06-01
 Thailand hCoV-19/Thailand/Bangkok-CONI-0107/2020
 A1- C6312A G11083T C13730T C19524T C23929T C28311T

EPI_ISL_456163
 2020-03-11 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR0712/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_457799 MT646071
 2020-03-11 2020-06-02
 United States SARS-CoV-2/human/USA/MD-HP00057/2020
 C241T C1059T C3037T C10851T C14408T A23403G G25563T

EPI_ISL_457808 MT646078
 2020-03-11 2020-06-02
 United States SARS-CoV-2/human/USA/MD-HP00067/2020
 C241T C629T C1059T C3037T C14408T C21772T A23403G C23453T G25563T

EPI_ISL_460440 MT520515
 2020-03-11 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00006/2020
 ATTAAAGGTTTATAC1- C241T C1059T C3037T C14408T A23403G G25563T ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_460467 MT520542
 2020-03-11 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00004/2020
 ATTA1- T490A C3177T C8782T T18736C G19684T C24034T T26729C C27635T G28077C T28144C A29700G AAAAAAAAAAAAAAAAAAAAAA29882-

EPI_ISL_460472 MT520547
 2020-03-11 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00005/2020
 ATTAAAGGTTTATACC1- C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_461147
 2020-03-11 2020-06-06
 Netherlands hCoV-19/Netherlands/NoordBrabant_111/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- T6353C C17410T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_462210
 2020-03-11 2020-06-08
 Belgium hCoV-19/Belgium/BWM-0311356/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C23575T G23587C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_463008
 2020-03-11 2020-06-09
 Germany hCoV-19/Germany/Muenster_FI1103201/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T A23403G GGG28881AAC G29540T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_463741
 2020-03-11 2020-06-10
 Cyprus hCoV-19/Cyprus/001/2020
 C241T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_464721
 2020-03-11 2020-06-11
 United Kingdom hCoV-19/England/201140309/2020
 G11083T C14805T T17247C A19828R G26144T

EPI_ISL_464734
 2020-03-11 2020-06-11
 United Kingdom hCoV-19/England/201140432/2020
 GT5743SY G11083T G26144T

EPI_ISL_464770
 2020-03-11 2020-06-11
 United Kingdom hCoV-19/England/201160002/2020
 C241T C3037T C11563Y C13329Y A13341M C14408T A20728M G22051R A22116W G22147R C22251Y A23403G G29097K

EPI_ISL_464776
 2020-03-11 2020-06-11
 United Kingdom hCoV-19/England/201160010/2020
 T11G C241T C3037T C14408T T17835C A23403G

EPI_ISL_464777
 2020-03-11 2020-06-11
 United Kingdom hCoV-19/England/201160011/2020
 C241T C3037T C14408T T17835C A23403G

EPI_ISL_464778
 2020-03-11 2020-06-11
 United Kingdom hCoV-19/England/201160012/2020
 C241T C3037T C14408T T17835C A23403G

EPI_ISL_464785
 2020-03-11 2020-06-11
 United Kingdom hCoV-19/England/201160068/2020
 C241T C3037T GT5743SY C14408T A23403G C25096T GGG28881AAC

EPI_ISL_464790
 2020-03-11 2020-06-11
 United Kingdom hCoV-19/England/201160243/2020
 T1368C C6990T G11083T C14805T A22500W C23707T G26144T

EPI_ISL_464791
 2020-03-11 2020-06-11
 United Kingdom hCoV-19/England/201160258/2020
 A2480G C2558T G11083T C14805T G26144T

EPI_ISL_464795
 2020-03-11 2020-06-11
 United Kingdom hCoV-19/England/201160276/2020
 C241T C3037T C14408T C15324T A23403G

EPI_ISL_464803
 2020-03-11 2020-06-11
 United Kingdom hCoV-19/England/201160756/2020
 C241T C3037T C14408T G21508R A23403G

EPI_ISL_464824
 2020-03-11 2020-06-11
 United Kingdom hCoV-19/England/201161219/2020
 C241T G942R C3037T C14408T A23403G GGG28881AAC

EPI_ISL_464843
 2020-03-11 2020-06-11
 United Kingdom hCoV-19/England/201161462/2020
 C241T C3037T G3901T C14408T A20268G A23403G

EPI_ISL_464849
 2020-03-11 2020-06-11
 United Kingdom hCoV-19/England/201161484/2020
 C241T C2416T C2509Y C3037T A9848R C14408T C14786T A16597G G19292K G20578T A23403G G25563T

EPI_ISL_464863
 2020-03-11 2020-06-11
 United Kingdom hCoV-19/England/201161611/2020
 ATG1605- C20270T A29683T

EPI_ISL_464900
 2020-03-11 2020-06-11
 United Kingdom hCoV-19/England/201180343/2020
 C241Y C3037Y GT5743SY C14408Y A23403R GGG28881RRS

EPI_ISL_464948
 2020-03-11 2020-06-11
 United Kingdom hCoV-19/England/20118104004/2020
 ATG1605- G17266A

EPI_ISL_464949
 2020-03-11 2020-06-11
 United Kingdom hCoV-19/England/20118104104/2020
 ATG1605- G17266A

EPI_ISL_465084
 2020-03-11 2020-06-11
 United Kingdom hCoV-19/England/20119060904/2020
 A187G C241T C1997T C3037T C8290T C14408T A23403G A24110T G24821T

EPI_ISL_466959 LR824069
 2020-03-11 2020-06-12
 Switzerland 100035
 C241T C3037T C14408T T22497Y T22516W A23403G C27046T GGG28881AAC

EPI_ISL_466960 LR824079
 2020-03-11 2020-06-12
 Switzerland 100036
 C241T C3037T C6762T C14408T C15324T A19298W TT22515YW A23403G

EPI_ISL_466961 LR824074
 2020-03-11 2020-06-12
 Switzerland 100037
 C241T C3037T G4255T C10582T C14408T T19329Y C19343S T19401W G22104K C22347S T22516W A23403G G25947A A26530R C29249T

EPI_ISL_466970 LR824071
 2020-03-11 2020-06-12
 Switzerland 100048
 C241T C3037T C14408T T19335Y T19500Y A19548R T22463W A23403G

EPI_ISL_467925 MT614520
 2020-03-11 2020-06-15
 United States SARS-CoV-2/human/USA/UT-QDX-82/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1545T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467959
 2020-03-11 2020-06-16
 United States hCoV-19/USA/CA-SR0429/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_468731
 2020-03-11 2020-06-17
 Belgium hCoV-19/Belgium/UGent-82/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_468732
 2020-03-11 2020-06-17
 Belgium hCoV-19/Belgium/UGent-83/2020
 C241T C3037T C4809T C14408T A23403G

EPI_ISL_468734
 2020-03-11 2020-06-17
 Belgium hCoV-19/Belgium/UGent-86/2020
 C241T C1059T C3037T C14408T G15380T A23403G G25563T

EPI_ISL_468735
 2020-03-11 2020-06-17
 Belgium hCoV-19/Belgium/UGent-87/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_468736
 2020-03-11 2020-06-17
 Belgium hCoV-19/Belgium/UGent-88/2020
 C241T C3037T C14408T A23403G A26530G

EPI_ISL_469282
 2020-03-11 2020-06-18
 France hCoV-19/France/211_80/2020
 ATTAAAGGTTTATAC1- C241T C1059T C3037T T13006C C14408T C23277T A23403G G25563T C25688T

EPI_ISL_471547
 2020-03-11 2020-06-22
 Czech Republic hCoV-19/Czech Republic/NRL_2554/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3955T C14408T A23403G G25534T C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475838
 2020-03-11 2020-06-25
 Austria hCoV-19/Austria/CeMM0403/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475910
 2020-03-11 2020-06-25
 Austria hCoV-19/Austria/CeMM0559/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G15380K T16993Y A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475919
 2020-03-11 2020-06-25
 Austria hCoV-19/Austria/CeMM0570/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G443A T1570C G11083T G14656T C14805T T17247C T21739C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475920
 2020-03-11 2020-06-25
 Austria hCoV-19/Austria/CeMM0571/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G20709T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476067
 2020-03-11 2020-06-25
 Czech Republic hCoV-19/Czech Republic/NRL_4033/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C28512A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476785
 2020-03-11 2020-06-25
 United States hCoV-19/USA/CA-CZB-1768/2020
 ATTAAAGGTTT1- G11083T C14805T T15922C T17247C G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_479662 MT678839
 2020-03-11 2020-06-30
 South Korea SARS-CoV-2/human/KOR/CNUHV03/2020
 T120C A963G C2536T A3553G G3815A T4120C T4402C A5019G G5062T A6030G A6391G A6505G T7198C T7380C T7576C G7684A T8296C T8439C T8523C C8782T G8876A T9179C A9218G G11083T TGAT11275AATC T13147C A13315G T14086C A14681G T15728C T17772C A17809G T18613C C21377G T21432C T21439C A21675G T21819C C21846T A21849G A22013G T22117G T24073C T24565C T27534C G27593A T27956C T28144C T28516C A29355T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_479853
 2020-03-11 2020-07-01
 Japan hCoV-19/Japan/PG-0121/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C3037T C8626T C14408T C18877T A23403G G25563T C26735T TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_479854
 2020-03-11 2020-07-01
 Japan hCoV-19/Japan/PG-0122/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C14408T C18877T A23403G G25563T C26735T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_479872
 2020-03-11 2020-07-01
 Japan hCoV-19/Japan/PG-0162/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C11752T C19170A G28857T TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_479905
 2020-03-11 2020-07-01
 Japan hCoV-19/Japan/PG-0204/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCT1- C8782T G16381A T17877C T28144C G28878A G29742A GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_479906
 2020-03-11 2020-07-01
 Japan hCoV-19/Japan/PG-0205/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C8782T G16381A T17877C T28144C G28878A G29742A ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_479907
 2020-03-11 2020-07-01
 Japan hCoV-19/Japan/PG-0207/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C8782T G16381A T17877C T28144C G28878A G29742A TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_479922
 2020-03-11 2020-07-01
 Japan hCoV-19/Japan/PG-0223/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C140T A2160G T4402C G5062T C8782T G11083T T28144C ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_479931
 2020-03-11 2020-07-01
 Japan hCoV-19/Japan/PG-0237/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C4784T C8782T C9979T G16381A T17877C T28144C G28878A G29742A GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_481283
 2020-03-11 2020-07-02
 United States hCoV-19/USA/NY-NYU-VC-003/2020
 ATTAA1- C241T C1059T C3037T C14408T A23403G G25563T TGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29785-

EPI_ISL_482483
 2020-03-11 2020-07-03
 Canada hCoV-19/Canada/MB_79/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6312A G11083T C13730T C23929T C28311T ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_482990
 2020-03-11 2020-07-06
 United States hCoV-19/USA/MN-MDH-1269/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25563T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_482995
 2020-03-11 2020-07-06
 United States hCoV-19/USA/MN-MDH-1274/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C11776T C14408T A23403G GGG28881AAC T29855- GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_483542
 2020-03-11 2020-07-07
 Bahrain hCoV-19/Bahrein/BAH-01/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1397A G4144T G11083T C11109T C19862T T27384C T28688C G29742T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_483543
 2020-03-11 2020-07-07
 Bahrain hCoV-19/Bahrein/BAH-02/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1397A G11083T T28688C G29543T G29742T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_485831 MT739437 MT913050
 2020-03-11 2020-07-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0529/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C2416T C3037T C10712T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_485833 MT739439 MT913052
 2020-03-11 2020-07-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0531/2020
 ATTA1- C241T C2416T C3037T C10626T C10712T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_485834 MT739440 MT913053
 2020-03-11 2020-07-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0533/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C2416T C3037T G4523A C10712T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_485845 MT739451 MT913064
 2020-03-11 2020-07-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0544/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- T490A C3177T C8782T T18736C G19684T C24034T T26729C C27635T G28077C T28144C A29700G

EPI_ISL_487275 MT747438
 2020-03-11 2020-07-13
 Belgium SARS-CoV-2/Felis catus/BEL/BE-MG-0320/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488190
 2020-03-11 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F76F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21660T A23403G C23575T G23587C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488199
 2020-03-11 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F79C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G199T C241T A1461G C2334T C3037T C5730T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488201
 2020-03-11 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F811/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488287
 2020-03-11 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F723/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3189T C14408T A23403G GGG28881AAC G29540T G29736A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488356
 2020-03-11 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F802/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488434
 2020-03-11 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F77E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21660T A23403G C23575T G23587C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489838
 2020-03-11 2020-07-14
 Peru hCoV-19/Peru/Peru006/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAA1- C241T C3037T C14408T T15282C A23403G GGG28881AAC ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_489988
 2020-03-11 2020-07-14
 Peru hCoV-19/Peru/INS-011/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAA1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_490209
 2020-03-11 2020-07-15
 Peru hCoV-19/Peru/INS-015/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAA1- C241T A1087G G1598A C3037T T5124G C12970T C14408T A20268G G21220T A23403G ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_491440
 2020-03-11 2020-07-17
 Costa Rica hCoV-19/Costa Rica/INC-0028/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C3037T C14408T C21638T A23403G G26143A TATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29832-

EPI_ISL_491446
 2020-03-11 2020-07-17
 Costa Rica hCoV-19/Costa Rica/INC-0034/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATC1- C241T C3037T C14408T C17104T C21638T A23403G G26143A ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_492665
 2020-03-11 2020-07-20
 United Kingdom hCoV-19/England/BRIS-130983/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C8655T G29000T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492735
 2020-03-11 2020-07-20
 United Kingdom hCoV-19/England/BRIS-130B9C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G659S C3037T C3373A C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492984
 2020-03-11 2020-07-20
 Italy hCoV-19/Italy/NegrarVR_5/2020
 A1- A187G C241T C3037T C14408T C14889T A23403G T29867A C29870A

EPI_ISL_498010
 2020-03-11 2020-07-26
 South Korea hCoV-19/Korea/KCDC2109/2020
 ATTAAAGGTT1- G5572T G11083T C14805T G26144T G27441T

EPI_ISL_498013
 2020-03-11 2020-07-26
 South Korea hCoV-19/Korea/KCDC2112/2020
 ATTAAAGG1- A2196C G5572T G11083T C14805T G26144T G27441T

EPI_ISL_498168
 2020-03-11 2020-07-27
 Colombia hCoV-19/Colombia/T1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G578A C17747T A17858G C18060T A24694T T28144C A29365G A29547G G29736T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498169
 2020-03-11 2020-07-27
 Colombia hCoV-19/Colombia/T8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G578A C18060T A24694T T28144C A29365G A29547G G29736T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498170
 2020-03-11 2020-07-27
 Colombia hCoV-19/Colombia/T12/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G578A C8782T C17747T A17858G C18060T A24694T G25785T T28144C A29365G A29547G G29736T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_500038
 2020-03-11 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A4745/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T G10097A C14408T A23403G C23731T GGG28881AAC C29870A

EPI_ISL_500044
 2020-03-11 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A47EB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G C25513Y GGG28881AAC

EPI_ISL_500058
 2020-03-11 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A498B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G C25350T A28254G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_500410
 2020-03-11 2020-07-28
 Spain hCoV-19/Spain/COV005976/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGA1- C241T C1059T C3037T T13006C C14408T G17302T A23403G G25563T C25688T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_500411
 2020-03-11 2020-07-28
 Spain hCoV-19/Spain/COV005977/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T T13006C C14408T G17302T A23403G G25563T C25688T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_500413
 2020-03-11 2020-07-28
 Spain hCoV-19/Spain/COV005979/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T G6337T T13006C C14408T G17302T A23403G G25563T C25688T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_500449
 2020-03-11 2020-07-28
 Spain hCoV-19/Spain/COV006019/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A20268G A23403G T28600C GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_500634
 2020-03-11 2020-07-29
 Australia hCoV-19/Australia/NSW2156/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G C9223T G11083T C14805T T17247C A17799G G26144T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500635
 2020-03-11 2020-07-29
 Australia hCoV-19/Australia/NSW2157/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C9165T C17747T A17858G C18060T A24694T T28144C CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_508766 MT834608
 2020-03-11 2020-08-04
 United States SARS-CoV-2/human/USA/FL-BPHL-0562/2020
 ATT1- C241T C3037T C14408T A23403G GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_508767 MT834609
 2020-03-11 2020-08-04
 United States SARS-CoV-2/human/USA/FL-BPHL-0563/2020
 A1- C241T C3037T C14408T A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_508872
 2020-03-11 2020-08-04
 France hCoV-19/France/ARA07639/2020
 ATTAAA1- C241T C337T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_508910
 2020-03-11 2020-08-04
 France hCoV-19/France/NA01745/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGT1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_508943
 2020-03-11 2020-08-04
 France hCoV-19/France/ARA07722/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGT1- C241T C1059T C3037T C14408T A23403G G25563T G28423A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_508944
 2020-03-11 2020-08-04
 France hCoV-19/France/ARA07731/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- T514C ATG1605- C17410T C28610G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_508945
 2020-03-11 2020-08-04
 France hCoV-19/France/ARA0779/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_511892
 2020-03-11 2020-08-10
 Vietnam hCoV-19/Vietnam/VNHN_0554/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC A29881G A29883T A29885T

EPI_ISL_515294
 2020-03-11 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0005/2020
 ATTAAA1- C8782T C17747T A17858G C18060T A25385G T28144C

EPI_ISL_515974
 2020-03-11 2020-08-20
 Denmark hCoV-19/Denmark/ALAB-1000/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516831
 2020-03-11 2020-08-24
 United Kingdom hCoV-19/England/LOND-125FCEB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516836
 2020-03-11 2020-08-24
 United Kingdom hCoV-19/England/LOND-125FC63/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9711T C14408T A23403G A26530G G28739T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_523810
 2020-03-11 2020-08-26
 Peru hCoV-19/Peru/LAL-INS-070/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAA1- C8782T C26088T T28144C ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_523934
 2020-03-11 2020-08-27
 Germany hCoV-19/Germany/NW-63/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A C6317T C9891Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_523968
 2020-03-11 2020-08-27
 Moldova hCoV-19/Moldova/ChVir7776/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGA1- C241T C3037T C14408T A23403G CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_525597
 2020-03-11 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-12824-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_525599
 2020-03-11 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-13245-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- A1515G C9223T G11083T C14805T T17247C A17799G C23987T G26144T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_525600
 2020-03-11 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-13260-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_525601
 2020-03-11 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-13391-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T A8882G C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_528001
 2020-03-11 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42186303/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T G16245A C21057T A23403G ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_528002
 2020-03-11 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42186366/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C10755T C14408T C15324T A23403G TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_528003
 2020-03-11 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42186379/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528004
 2020-03-11 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42186390/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G ATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29850-

EPI_ISL_528005
 2020-03-11 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42186394/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528006
 2020-03-11 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42186401/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528007
 2020-03-11 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42186413/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528008
 2020-03-11 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42186439/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528009
 2020-03-11 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42186504/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T G3251T C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528010
 2020-03-11 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42186509/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G3251T C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528011
 2020-03-11 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42186528/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528012
 2020-03-11 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42186550/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T C15810T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528013
 2020-03-11 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42186574/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528015
 2020-03-11 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42186686/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528017
 2020-03-11 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42186718/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_528023
 2020-03-11 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42187456/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C313T C3037T C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_534933
 2020-03-11 2020-09-14
 United Kingdom hCoV-19/England/OXON-B4153/2020
 C241T C3037T C14408T C22009T A23403G C27046T C27595T GGG28881AAC

EPI_ISL_534981
 2020-03-11 2020-09-14
 United Kingdom hCoV-19/England/OXON-B48C7/2020
 G11083T C14805T G26031T G26144T G28842T AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_535728
 2020-03-11 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00214517/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535729
 2020-03-11 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00214546/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C799T C1427T C8782T C17747T A17858G C18060T A24694T G25543A T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535823
 2020-03-11 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00224795/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T C3096T C9170T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536436
 2020-03-11 2020-09-16
 Singapore hCoV-19/Singapore/895/2020
 A1- C4320T A29746R AAAAAAAAAAAA29892-

EPI_ISL_536553
 2020-03-11 2020-09-16
 Peru hCoV-19/Peru/LIM-INS-160/2020
 ATTA1- C241T A1087G G1598A C3037T T5124G C12970T C14408T A20268G G21220T A23403G G29734C

EPI_ISL_537414
 2020-03-11 2020-09-16
 Spain hCoV-19/Spain/RI-CSIC-99005871/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C1059T C3037T T13006C C14408T G17302T A23403G G25563T C25688T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_538266 MW010247
 2020-03-11 2020-09-16
 United States SARS-CoV-2/human/USA/MD-MDH-0182/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T GTTATG515- C3037T C14408T C18877T A23403G G25563T G29864A T29867- C29870G

EPI_ISL_539566
 2020-03-11 2020-09-18
 Spain hCoV-19/Spain/GA-ISCIII-202077/2020
 A1- A6T C2143T GGCTATTGATGGTGGTGTCACTCGTGACATAGCATCTACAGATAC8695- CCAGCGTGGTGGTAGTTATACTAATGACAAAGCTTGCCCATTGATTGCTGCAGTCATAACAAGAGAAGTGGGTTTTGTCGTGCCTGGTTTGCCTGGCACGATATTACGCACAACTAATGGTGACTTTTTGCATTTCTTACCTAGAGTTTTTAGTGCAGTTGGTAACATCTGT8782- T9477A C14805T G25785T G25979T T28144C C28657T C28863T A29716G A29767G TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_541138
 2020-03-11 2020-09-22
 Czech Republic hCoV-19/Czech Republic/NRL-1753/20
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A610G ATG1605- G18985T C19366T TATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29791-

EPI_ISL_547480
 2020-03-11 2020-09-24
 Netherlands hCoV-19/Netherlands/NB-RIVM-10048/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A24862G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547481
 2020-03-11 2020-09-24
 Netherlands hCoV-19/Netherlands/NB-RIVM-10049/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A24862G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_548245
 2020-03-11 2020-09-25
 Sweden hCoV-19/Sweden/20-08157/2020
 A610G ATG1605- G18985T C19366T G27915C

EPI_ISL_548982
 2020-03-11 2020-09-28
 Singapore hCoV-19/Singapore/974/2020
 ATTA1- A1515G C9223T G11083T C14805T T17247C A21625G G26144T AAAAAAAAAAAA29892-

EPI_ISL_548987
 2020-03-11 2020-09-28
 Singapore hCoV-19/Singapore/979/2020
 ATTAAAGGTTT1- C241T C2416T C3037T C14408T A23403G G25563T G26233T A29700G AAAAAAAAAAAA29892-

MT192765
 2020-03-11 2020-03-16
 United States SARS-CoV-2/human/USA/PC00101P/2020
 ATTAAAG1- C241T C3037T C14408T C18814T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT256924
 2020-03-11 2020-03-27
 Colombia SARS-CoV-2/human/COL/79256_Antioquia/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17470T C26088T T28144C G28985T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT415321
 2020-03-11 2020-04-30
 India SARS-CoV-2/human/IND/GMCKN318/2020
 C241T C3037T C14408T A23403G

MT444148
 2020-03-11 2020-05-07
 United States SARS-CoV-2/human/USA/CA-NHRC-01/2020
 ATTAAAGGTTTAT1- C8782T C17747T A17858G C18060T A24694T T28144C

MT459852
 2020-03-11 2020-05-11
 Greece SARS-CoV-2/human/GRC/136_32338/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G G24236T GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

MT459853
 2020-03-11 2020-05-11
 Greece SARS-CoV-2/human/GRC/137_32340/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T A6646G C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

MT459854
 2020-03-11 2020-05-11
 Greece SARS-CoV-2/human/GRC/138_32343/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

MT509472
 2020-03-11 2020-05-22
 United States SARS-CoV-2/human/USA/DC-HP00072/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T A4912C G11083T C14805T C17010A C21575T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT509475
 2020-03-11 2020-05-22
 United States SARS-CoV-2/human/USA/MD-HP00076/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C6040T C8782T C8950T G12478A T18736C C24034T T26729C G28077C T28144C C28896G C29451T A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT671822
 2020-03-11 2020-06-26
 United States SARS-CoV-2/human/USA/CA-CZB-1768/2020
 ATTAAAGGTTT1- G11083T C14805T T15922C T17247C G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT703677
 2020-03-11 2020-07-02
 United States SARS-CoV-2/human/USA/NYU-VC-003/2020
 ATTAA1- C241T C1059T C3037T C14408T A23403G G25563T TGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29785-

MT810561
 2020-03-11 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0429-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT956914
 2020-03-11 2020-09-03
 Spain SARS-CoV-2/human/ESP/HUD-72114039/2020
 C241T G425A GTTATG515- G787T C3037T C14408T A20268G A23403G C29250T

MW014808
 2020-03-11 2020-09-17
 United States SARS-CoV-2/human/USA/COVID20-1196/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T C18877T A23403G G25563T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

MW030220
 2020-03-11 2020-09-22
 Peru SARS-CoV-2/human/PER/covper084/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGT1- C241T A1087G G1598A C3037T T5124G C12970T C14408T A20268G G21220T A23403G C29675- ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

NMDC60013240
 2020-03-11 2020-06-01
 China hCoV-19/Guangzhou/ID132/2020
 T3A C241T C3037T T12436A C14408T C15324T A23403G ATT29163- T29470A G29868A

EPI_ISL_415475 LR878077
 2020-03-12 2020-03-17
 Netherlands hCoV-19/Netherlands/NA_19/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T C6255T C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415485 LR878095
 2020-03-12 2020-03-17
 Netherlands hCoV-19/Netherlands/NA_28/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C1457T C1594T C3037T C11109T C14408T A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415524 LR878096
 2020-03-12 2020-03-17
 Netherlands hCoV-19/Netherlands/NoordBrabant_68/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- T514C ATG1605- C17410T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415525 LR878090
 2020-03-12 2020-03-17
 Netherlands hCoV-19/Netherlands/NoordHolland_3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C1059T C3037T A6825C C13358T C14408T A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415527 LR878079
 2020-03-12 2020-03-17
 Netherlands hCoV-19/Netherlands/Utrecht_18/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- G11083T A12820G C13119T C14805T T17247C G26144T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415535 LR878111
 2020-03-12 2020-03-17
 Netherlands hCoV-19/Netherlands/ZuidHolland_31/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T T658C C3037T C14408T A23403G A24862G C28629T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415655
 2020-03-12 2020-03-19
 United Kingdom hCoV-19/Wales/PHW27/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16393T G22583A A23403G G27366T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_415657
 2020-03-12 2020-03-19
 United Kingdom hCoV-19/Wales/PHW37/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A G28851T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_415920
 2020-03-12 2020-03-19
 United Kingdom hCoV-19/Wales/PHW32/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A C25669T G28851T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_416635 MT252761
 2020-03-12 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW97/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCT1- C8782T C17747T A17858G C18060T T27384C T28144C G29862A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_416636 MT252762
 2020-03-12 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW98/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C8782T C17747T A17858G C18060T A27237T T28144C A29869D -29904ANANANANANA

EPI_ISL_416637 MT252763
 2020-03-12 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW99/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C8782T C17747T A17858G C18060T T28144C -29904ANANAC

EPI_ISL_416638 MT252764
 2020-03-12 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW100/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A31W AACC34HTTH C8782T C17747T A17858G C18060T T28144C -29904AAATAT

EPI_ISL_416661 MT252741
 2020-03-12 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW123/2020
 ATTAAAGGTTTATACCTTCCCAG1- GT24AA AACC34TTTA C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T AAAAAA29898-

EPI_ISL_416662 MT252742
 2020-03-12 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW124/2020
 ATTAAAG1- A34H C8782T C17747T A17858G C18060T T28144C CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_416663 MT252743
 2020-03-12 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW125/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTG1- C8782T C17747T A17858G C18060T T28144C G29862A A29903-

EPI_ISL_416664 MT252744
 2020-03-12 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW126/2020
 ATT1- T10A C8782T C11704T C17747T A17858G C18060T C19961T T28144C AAA29901-

EPI_ISL_416665 MT252745
 2020-03-12 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW127/2020
 ATTAAAGGTTT1- C1238T C8782T C17747T A17858G C18060T T28144C T28924C GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_416666 MT252746
 2020-03-12 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW128/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C8782T C17747T A17858G C18060T T28144C A29903-

EPI_ISL_416667 MT252747
 2020-03-12 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW129/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C8782T T15927G C17747T A17858G C18060T C18401T C26936T T28144C -29904ACANA

EPI_ISL_416671 MT252750
 2020-03-12 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW133/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCAC1- C241T C3037T C14408T G16741T C18877T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_416677 MT252755
 2020-03-12 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW139/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C8782T T15927G C17747T A17858G C18060T G20167T C26936T T28144C C29580T -29904CANANAHA

EPI_ISL_416693 MT252726
 2020-03-12 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW155/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAA1- C241T C1059T C3037T C14408T A23403G G24348T G25563T G29553A GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_417346 MT246454
 2020-03-12 2020-03-25
 United States SARS-CoV-2/human/USA/WA-UW197/2020
 ATTAAAGGT1- C1469T G11083T C14805T T17247C G26144T G29254T AA29902-

EPI_ISL_417347 MT246455
 2020-03-12 2020-03-25
 United States SARS-CoV-2/human/USA/WA-UW198/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- T47Y G332T C5784T C8782T C17747T A17858G C18060T C20823T T28144C A29903-

EPI_ISL_417349 MT246457
 2020-03-12 2020-03-25
 United States SARS-CoV-2/human/USA/WA-UW200/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAG1- C140T TAG4879- C8782T C12213T C17747T A17858G C18060T T28144C A29903-

EPI_ISL_417351 MT246459
 2020-03-12 2020-03-25
 United States SARS-CoV-2/human/USA/WA-UW202/2020
 T2C AAGGTT5- C8782T G11161A C17474T C17747T A17858G C18060T G18149T T28144C A29865G A29869H -29904ANANANANAAA

EPI_ISL_417352 MT246460
 2020-03-12 2020-03-25
 United States SARS-CoV-2/human/USA/WA-UW203/2020
 TTA2GCT C241T C1059T C3037T C14408T A23403G G25563T -29904ANANAAANAAAAA

EPI_ISL_417364 MT246472
 2020-03-12 2020-03-25
 United States SARS-CoV-2/human/USA/WA-UW215/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCT1- C8782T T11320C C17747T A17858G C18060T G25494T T28144C AAAAAAAA29896-

EPI_ISL_417404
 2020-03-12 2020-03-25
 Australia hCoV-19/Australia/NSW50/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C313T C3037T C14408T A23403G GGG28881AAC CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_417452 MT251974
 2020-03-12 2020-03-26
 United States SARS-CoV-2/human/USA/CT-UW238/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCT1- C241T C3037T C14408T C18877T A23403G G25563T G29864V TG29867AA

EPI_ISL_417469 MT911538
 2020-03-12 2020-03-26
 United States SARS-CoV-2/human/USA/MN31-MDH31/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C6078Y G13489R C14408T A23403G G25563T CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

EPI_ISL_417470 MT911539
 2020-03-12 2020-03-26
 United States SARS-CoV-2/human/USA/MN32-MDH32/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13019T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417471 MT911540
 2020-03-12 2020-03-26
 United States SARS-CoV-2/human/USA/MN34-MDH34/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A23403G -29820T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417472 MT911541
 2020-03-12 2020-03-26
 United States SARS-CoV-2/human/USA/MN35-MDH35/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839T

EPI_ISL_417474 MT911543
 2020-03-12 2020-03-26
 United States SARS-CoV-2/human/USA/MN38-MDH38/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3738Y C14408T A23403G G25563T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417475
 2020-03-12 2020-03-26
 United States hCoV-19/USA/MN39-MDH39/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T A4912C C14805T C17010A G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417476 MT911544
 2020-03-12 2020-03-26
 United States SARS-CoV-2/human/USA/MN40-MDH40/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C11916T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417477 MT911545
 2020-03-12 2020-03-26
 United States SARS-CoV-2/human/USA/MN41-MDH41/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G127T C8782T C14322T C17747T A17858G C18060Y A24694T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417479 MT911547
 2020-03-12 2020-03-26
 United States SARS-CoV-2/human/USA/MN43-MDH43/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037Y C14408T A23403R CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417480 MT911548
 2020-03-12 2020-03-26
 United States SARS-CoV-2/human/USA/MN44-MDH44/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4633T C8782T T15927G C17747T A17858G C18060T T21158C C26936T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417696
 2020-03-12 2020-03-27
 Iceland hCoV-19/Iceland/135/2020
 C5142T G5880A G11083T C14805T T17247C G26144T

EPI_ISL_417713
 2020-03-12 2020-03-27
 Iceland hCoV-19/Iceland/130/2020
 C241T C3037T C14408T T22324C A23403G C24054T A25958G C27046T GGG28881AAC

EPI_ISL_417714
 2020-03-12 2020-03-27
 Iceland hCoV-19/Iceland/129/2020
 C241T C3037T C14408T A23403G C24054T A25958G C27046T GGG28881AAC

EPI_ISL_417720
 2020-03-12 2020-03-27
 Iceland hCoV-19/Iceland/138/2020
 C8782T T9445C C17747T A17858G C18060T A24694T T28144C

EPI_ISL_417727
 2020-03-12 2020-03-27
 Iceland hCoV-19/Iceland/127/2020
 C241T C3037T C14408T A23403G G25429T

EPI_ISL_417735
 2020-03-12 2020-03-27
 Iceland hCoV-19/Iceland/134/2020
 C241T C1059T A2786G C3037T C14408T G20419T A23403G G25563T

EPI_ISL_417771
 2020-03-12 2020-03-27
 Iceland hCoV-19/Iceland/131/2020
 C5142T G11083T C14805T T17247C G26144T

EPI_ISL_417784
 2020-03-12 2020-03-27
 Iceland hCoV-19/Iceland/124/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_417785
 2020-03-12 2020-03-27
 Iceland hCoV-19/Iceland/126/2020
 C241T C3037T C14408T A23403G C24054T A25958G C27046T GGG28881AAC

EPI_ISL_417786
 2020-03-12 2020-03-27
 Iceland hCoV-19/Iceland/128/2020
 C241T C3037T A10323G C14408T A20268G A23403G

EPI_ISL_417787
 2020-03-12 2020-03-27
 Iceland hCoV-19/Iceland/132/2020
 C241T C1059T C3037T C14408T A23403G G25563T T27407C

EPI_ISL_417788
 2020-03-12 2020-03-27
 Iceland hCoV-19/Iceland/133/2020
 C241T C3037T C14408T C15324T C21575T A23403G

EPI_ISL_417789
 2020-03-12 2020-03-27
 Iceland hCoV-19/Iceland/136/2020
 C8782T T9445C T17531C C17747T A17858G C18060T G18756T A24694T T28144C

EPI_ISL_417790
 2020-03-12 2020-03-27
 Iceland hCoV-19/Iceland/139/2020
 C241T C3037T A10323G C14408T A20268G A23403G

EPI_ISL_417791
 2020-03-12 2020-03-27
 Iceland hCoV-19/Iceland/140/2020
 C8782T T9445C T17531C C17747T A17858G C18060T G18756T A24694T T28144C

EPI_ISL_417954
 2020-03-12 2020-03-27
 Spain hCoV-19/Spain/Madrid_H3_10/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T C19017T A20268G A23403G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_417957
 2020-03-12 2020-03-27
 Spain hCoV-19/Spain/Madrid_H7_36/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C11704T C14408T A20268G A23403G ACCACACAAGGCAGATGGGCTATATAAACGTTTTC29544- G29734C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_417961
 2020-03-12 2020-03-27
 Spain hCoV-19/Spain/Madrid_H9_38/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C8782T T9477A C14805T G25979T C26681T T28144C C28657T C28863T C29835- AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_417963
 2020-03-12 2020-03-27
 Spain hCoV-19/Spain/Madrid_H10_39/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A20268G A23403G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_417967
 2020-03-12 2020-03-27
 Spain hCoV-19/Spain/Madrid_H11_40/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T C17639T A20268G A23403G C28638T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_418004
 2020-03-12 2020-03-28
 Portugal hCoV-19/Portugal/PT0019/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G G25537T C26150T G27798T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_418005
 2020-03-12 2020-03-28
 Portugal hCoV-19/Portugal/PT0020/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- G11083T C14805T T17247C G26144T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_418182
 2020-03-12 2020-03-28
 Spain hCoV-19/Spain/Madrid_H8_37/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C11704T C14408T A20268G A23403G ACCACACAAGGCAGATGGGCTATATAAACGTTTTC29544- G29734C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_418213
 2020-03-12 2020-03-29
 Senegal hCoV-19/Senegal/094/2020
 C241T C3037T C14408T A23403G G27261T C29421T

EPI_ISL_418227
 2020-03-12 2020-03-29
 France hCoV-19/France/HF2393/2020
 ATTAAAGGTTTATACCTTCCC1- C241T C335T C2416T C3037T C14408T A23403G G25563T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_418228
 2020-03-12 2020-03-29
 France hCoV-19/France/HF2405/2020
 ATTAAAGGTTTATACCTTC1- C241T C1059T C3037T C9803T C14408T C14645T A23403G G25563T C27434T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_418229
 2020-03-12 2020-03-29
 France hCoV-19/France/IDF2410/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C2416T C3037T G8371T C14408T A23403G G25563T TGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29809-

EPI_ISL_418326
 2020-03-12 2020-03-12
 Canada hCoV-19/Canada/ON_PHL7972/2020
 A1- G1397A A2832G G11083T T28688C G29742T AGTGTAC29756- AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418329
 2020-03-12 2020-03-12
 Canada hCoV-19/Canada/ON_PHL5694/2020
 A1- G1440A G2891A C7011T C11074T G11083T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418336
 2020-03-12 2020-03-12
 Canada hCoV-19/Canada/ON_PHL5705/2020
 A1- T8767C C8782T T10771C C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418337
 2020-03-12 2020-03-12
 Canada hCoV-19/Canada/ON_PHL3802/2020
 A1- T8767C C8782T T10771C C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418338
 2020-03-12 2020-03-12
 Canada hCoV-19/Canada/ON_PHL5710/2020
 A1- T8767C C8782T T10771C C12076T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418341
 2020-03-12 2020-03-12
 Canada hCoV-19/Canada/ON_PHL0142/2020
 A1- C8782T C17747T A17858G C18060T C18568T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418351
 2020-03-12 2020-03-12
 Canada hCoV-19/Canada/ON_PHL3575/2020
 A1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418356
 2020-03-12 2020-03-12
 Canada hCoV-19/Canada/ON_PHL6980/2020
 A1- C241T C1059T C3037T C9863T C14408T C17339T A22976G A23403G G25563T G28368A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418358
 2020-03-12 2020-03-12
 Canada hCoV-19/Canada/ON_PHL5756/2020
 A1- C241T C1059T C3037T C11916T C14408T C18998T C22444T A23403G G25563T G29540A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418359
 2020-03-12 2020-03-12
 Canada hCoV-19/Canada/ON_PHL5757/2020
 A1- C241T C1059T C3037T C11916T C14408T C18998T C22444T A23403G G25563T G29540A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418361
 2020-03-12 2020-03-12
 Canada hCoV-19/Canada/ON_PHL1095/2020
 A1- C241T C1059T C3037T C14408T A23403G G25217T G25563T A29866T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418367
 2020-03-12 2020-03-12
 Canada hCoV-19/Canada/ON_PHL7513/2020
 A1- C203T C241T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418368
 2020-03-12 2020-03-12
 Canada hCoV-19/Canada/ON_PHL3458/2020
 A1- A163G C241T C3037T C14408T A16422C A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418372
 2020-03-12 2020-03-12
 Canada hCoV-19/Canada/ON_PHL8458/2020
 A1- C241T C3037T C3373A T13532C C14408T A23403G G25906T GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418375
 2020-03-12 2020-03-12
 Canada hCoV-19/Canada/ON_PHL0141/2020
 A1- C6312A G11083T C13730T C23929T C28311T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418376
 2020-03-12 2020-03-12
 Canada hCoV-19/Canada/ON_PHL3459/2020
 A1- C6312A G11083T C13730T C23929T C28311T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418811
 2020-03-12 2020-03-31
 Canada hCoV-19/Canada/NB_6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G C25433T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_418812
 2020-03-12 2020-03-31
 Canada hCoV-19/Canada/MB_8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T8767C C8782T T10771C C17747T A17858G C18060T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_418838
 2020-03-12 2020-03-31
 Canada hCoV-19/Canada/BC_6404889/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T

EPI_ISL_418843
 2020-03-12 2020-03-31
 Canada hCoV-19/Canada/BC_7277381/2020
 C8782T A17858G C18060T T28144C

EPI_ISL_418846
 2020-03-12 2020-03-31
 Canada hCoV-19/Canada/BC_7553799/2020
 A187G C241T C3037T C14408T A23403G

EPI_ISL_418847
 2020-03-12 2020-03-31
 Canada hCoV-19/Canada/BC_8150537/2020
 C8782T C10789T C17747T A17858G C18060T C20132T T28144C

EPI_ISL_419302 LC547524
 2020-03-12 2020-04-02
 Japan hCoV-19/Japan/P4-2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_419303 LC547525
 2020-03-12 2020-04-02
 Japan hCoV-19/Japan/P4-3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C3037T C14408T A23403G GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_419309 LC547531
 2020-03-12 2020-04-02
 Japan hCoV-19/Japan/P5-1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_419313 MT262993
 2020-03-12 2020-03-30
 Pakistan SARS-Cov-2/human/PAK/Manga1/2020
 TTTCTATTGGTTCTT9721- TTGTATCTCGATGCTTATAAC19516- AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_419563
 2020-03-12 2020-04-02
 Luxembourg hCoV-19/Luxembourg/LNS0156959/2020
 C241T C3037T C14408T C15324T C16887T A23403G CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_419570
 2020-03-12 2020-04-02
 Luxembourg hCoV-19/Luxembourg/LNS1234709/2020
 C241T C3037T C14408T C15324T C16887T A23403G CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_419580
 2020-03-12 2020-04-02
 Luxembourg hCoV-19/Luxembourg/LNS2907333/2020
 C241T C3037T C14408T C15324T C16887T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_419595
 2020-03-12 2020-04-02
 Luxembourg hCoV-19/Luxembourg/LNS7753431/2020
 C241T C1059T C3037T C14408T A23403G G25563T T27299C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_419596
 2020-03-12 2020-04-02
 Luxembourg hCoV-19/Luxembourg/LNS7866283/2020
 C241T G520K C3037T C14408T T19839C G22180A A23403G GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_419602
 2020-03-12 2020-04-02
 Luxembourg hCoV-19/Luxembourg/LNS9324837/2020
 C241T C1059T C3037T C4320T C14408T A23403G G25563T C25688T ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_419708 MT339043
 2020-03-12 2020-04-03
 United States SARS-CoV-2/human/USA/VA-DCLS-0014/2020
 ATT1- C241T C1059T C3037T C3253T C14408T A23403G G25563T TGTTGCGGCAATAGTGTTTATAACACTTTGCTTCACACTC27702- C29870M

EPI_ISL_419710 MT322406
 2020-03-12 2020-04-08
 United States SARS-CoV-2/human/USA/VA-DCLS-0016/2020
 ATTAAAGGTTTATACCT1- C241T C2416T C3037T C10626T C10712T C14408T C22444T A23403G G25563T

EPI_ISL_419759 MT450962
 2020-03-12 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC47/2020
 ATTAAAGGTTTATACC1- A2480G C2558T T6971C G6975T G6977A C9170T G11083T C14805T G23755C G26144T

EPI_ISL_419762 MT450963
 2020-03-12 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC48/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C3037T C14408T C21301M A23403G G25563T

EPI_ISL_419764 MT450964
 2020-03-12 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC49/2020
 ATTAAAGGTT1- C241T C1059T C3037T C14408T C18060T A23403G G25563T

EPI_ISL_419766 MT450965
 2020-03-12 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC50/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_419768 MT450967
 2020-03-12 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC52/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T T11638C C13047T C14408T A23403G GGG28881AAC C29708T

EPI_ISL_419769 MT450968
 2020-03-12 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC53/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- T490A C3177T C8782T T18736C G19684T C24034T T26729C C27635T G28077C T28144C A29700G

EPI_ISL_419770 MT450969
 2020-03-12 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC54/2020
 ATTAAAGGTTTA1- C241T C3037T C14408T A23403G A26530G

EPI_ISL_419776 MT450970
 2020-03-12 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC55/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G11083T C14805T T17247C C18457T G26144T

EPI_ISL_419777 MT450971
 2020-03-12 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC56/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- T490A C3177T C8782T T18736C G19684T C24034T A25050G T26729C C27635T G28077C T28144C A29700G

EPI_ISL_419779 MT450972
 2020-03-12 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC57/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- A1646G C8782T C17747T A17858G C18060T T28144C

EPI_ISL_419784 MT450973
 2020-03-12 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC58/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C1076T G1397A G11083T T28688C G29742T

EPI_ISL_419826 MT450966
 2020-03-12 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC51/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- T490A C3177T C8782T T18736C G19684T C24034T T26729C C27635T G28077C T28144C C29085T A29700G GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_420039
 2020-03-12 2020-04-04
 France hCoV-19/France/GE2720/2020
 C241T C3037T C14408T C15324T A23403G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_420040
 2020-03-12 2020-04-04
 France hCoV-19/France/GE2722/2020
 C241T C3037T C14408T C15324T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_420111
 2020-03-12 2020-04-05
 Singapore hCoV-19/Singapore/34/2020
 ATTAAAGGTTTA1- C9502Y A19116R C21711T C24477Y T26232Y TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_420126
 2020-03-12 2020-04-05
 Spain hCoV-19/Spain/Valencia42/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420127
 2020-03-12 2020-04-05
 Spain hCoV-19/Spain/Valencia43/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420128
 2020-03-12 2020-04-05
 Spain hCoV-19/Spain/Valencia44/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C29144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420292
 2020-03-12 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C0655/2020
 A2480G C2558T G11083T C14805T C15755T G26144T

EPI_ISL_420901
 2020-03-12 2020-04-07
 Germany hCoV-19/Germany/BAV-V2010840/2020
 C241T C3037T C12756T C14408T A23403G C28121T

EPI_ISL_421501
 2020-03-12 2020-04-08
 France hCoV-19/France/IDF2359/2020
 C241T C1059T C3037T T13006C C14408T A23403G G25563T C25688T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421502
 2020-03-12 2020-04-08
 France hCoV-19/France/IDF2412/2020
 C241T C1059T C3037T G11083T C14408T C17822T C21622A A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421503
 2020-03-12 2020-04-08
 France hCoV-19/France/IDF2414/2020
 C241T C1059T C3037T G11083T T14394C C14408T G16852T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421669
 2020-03-12 2020-04-09
 India hCoV-19/India/1616/2020
 ATTAAAGGTTTAT1- C884T G1397A G8653T G11083T A19182G G19735T T28688C G29742T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_421670
 2020-03-12 2020-04-09
 India hCoV-19/India/1617/2020
 A4G C884T G1397A G6220A G8653T T10667C G11083T C22792A CA28253AC T28688C G28913T G29742T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_421671
 2020-03-12 2020-04-09
 India hCoV-19/India/1621/2020
 ATTAAAGGTTTAT1- C835T C884T G1397A G8653T G11083T G23426A T28688C G29742T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_421672
 2020-03-12 2020-04-09
 India hCoV-19/India/1644/2020
 ATTAAAGGTTTATAC1- C884T G1397A C8043T G8653T G11083T A26226G T28688C G29742T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_422877 LR877746
 2020-03-12 2020-04-11
 Netherlands hCoV-19/Netherlands/NoordBrabant_82/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- G29449T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_424363
 2020-03-12 2020-04-13
 India hCoV-19/India/1652/2020
 ATTAAAGGTTTATACCTTCCCA1- C884T G1397A T8329A T8336A T8347A G8653T G11083T A26226G T28688C G29742T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_424673
 2020-03-12 2020-04-13
 Mexico hCoV-19/Mexico/CDMX-InDRE_06/2020
 C936T C8782T G11083T C17747T A17858G C18060T A24694T T28144C G28812T AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_425468
 2020-03-12 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10DF05/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_425470
 2020-03-12 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10DF23/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_425662
 2020-03-12 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR118/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425674
 2020-03-12 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR131/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425692
 2020-03-12 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR15/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C541T C1059T C3037T G11083T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425699
 2020-03-12 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR16/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- G18090T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425720
 2020-03-12 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR18/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C3037T C14408T G18651T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425724
 2020-03-12 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR19/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C3037T C14408T G18651T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425749
 2020-03-12 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR23/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G27163T G28329T T29360C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425756
 2020-03-12 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR27/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C23086T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425757
 2020-03-12 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR28/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425763
 2020-03-12 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR34/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1483A C3037T C14408T A23403G G24751T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425785
 2020-03-12 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR56/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_425788
 2020-03-12 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR58/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G18443K A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425790
 2020-03-12 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR62/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425813
 2020-03-12 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR89/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C7869T G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425815
 2020-03-12 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR91/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G C28854T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_425828
 2020-03-12 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB022/2020
 C241T C3037T C14408T A23403G

EPI_ISL_425829
 2020-03-12 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB023/2020
 C14408T

EPI_ISL_425830
 2020-03-12 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB024/2020
 C241T C3037T C14408T A23403G

EPI_ISL_425843
 2020-03-12 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB037/2020
 C14805T C19484T G28842T

EPI_ISL_425848
 2020-03-12 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB044/2020
 

EPI_ISL_426322
 2020-03-12 2020-04-15
 United States hCoV-19/USA/NY-Wadsworth-14726-02/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- A2480G C2558T A10024G G11083T T14706C C14805T C17010A C21575T G26144T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426361
 2020-03-12 2020-04-16
 Mexico hCoV-19/Mexico/CDMX-INCMNSZ_01/2020
 C8782T C17747T A17858G C18060T C21707T C23422T A24694T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_426363
 2020-03-12 2020-04-16
 Mexico hCoV-19/Mexico/CDMX-INCMNSZ_03/2020
 C8782T C17747T A17858G C18060T C21707T C23422T A24694T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_426364
 2020-03-12 2020-04-16
 Mexico hCoV-19/Mexico/CDMX-INCMNSZ_04/2020
 C8782T C17747T A17858G C18060T C21707T C23422T A24694T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_426518
 2020-03-12 2020-04-17
 United States hCoV-19/USA/AZ-TG268915/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426531
 2020-03-12 2020-04-17
 United States hCoV-19/USA/AZ-TG269883/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_427526
 2020-03-12 2020-04-19
 United States hCoV-19/USA/NY-WCMP2C03P/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871MG

EPI_ISL_427527
 2020-03-12 2020-04-19
 United States hCoV-19/USA/NY-WCMP2D02P/2020
 C8782T C17747T A17858G C18060T A21404G T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872G

EPI_ISL_427528
 2020-03-12 2020-04-19
 United States hCoV-19/USA/NY-WCMP2D04P/2020
 C241T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872G

EPI_ISL_427529
 2020-03-12 2020-04-19
 United States hCoV-19/USA/NY-WCMP2H03P/2020
 C241T C1059T C3037T C14408T G15760A A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871RG

EPI_ISL_427530
 2020-03-12 2020-04-19
 United States hCoV-19/USA/NY-WCMP3E02P/2020
 C241T C1059T C3037T C11916T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871RG

EPI_ISL_428692
 2020-03-12 2020-04-21
 Spain hCoV-19/Spain/Madrid_H12_29/2020
 ATTAAAGGTTTATACCTTC1- C8782T T9477A C14805T A22151G G25979T C28087T T28144C C28657T C28863T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861A

EPI_ISL_428693
 2020-03-12 2020-04-21
 Spain hCoV-19/Spain/Madrid_H12_30/2020
 AT1TG A4T C241T C1059T C3037T C14408T A23403G G25563T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_428694
 2020-03-12 2020-04-21
 Spain hCoV-19/Spain/Madrid_H12_31/2020
 ATTAAAGGTTTATACCTT1- C241T C3037T A6248C C14408T A20268G A23403G C25413T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_428695
 2020-03-12 2020-04-21
 Spain hCoV-19/Spain/Madrid_H12_32/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C12068T C14408T C16952T A20268G A23403G T29848A A29850T A29860T GAGA29862TTAG GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_428696
 2020-03-12 2020-04-21
 Spain hCoV-19/Spain/Madrid_H12_33/2020
 ATTAAAGGTTTATA1- T25G C241T C3037T C14408T A20268G A23403G -29826T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_428697
 2020-03-12 2020-04-21
 Spain hCoV-19/Spain/Madrid_H12_34/2020
 ATTAAAGGTTT1- C3373T G11083T G26144T G28209C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_428698
 2020-03-12 2020-04-21
 Spain hCoV-19/Spain/Madrid_H12_35/2020
 ATTAAAGGTTTATACCTT1- A5838C C8782T G18186T C20611T C26088T T28144C TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_429123
 2020-03-12 2020-04-23
 Sweden hCoV-19/Sweden/20-08169/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_429124
 2020-03-12 2020-04-23
 Sweden hCoV-19/Sweden/20-08170/2020
 C241T C3037T C14408T A21137G A23403G

EPI_ISL_429125
 2020-03-12 2020-04-23
 Sweden hCoV-19/Sweden/20-08173/2020
 C241T C3037T A13947T C14408T A23403G GGG28881AAC

EPI_ISL_429160
 2020-03-12 2020-04-23
 Sweden hCoV-19/Sweden/20-50312/2020
 A187G C241T C3037T C14408T C14741T A23403G

EPI_ISL_429161
 2020-03-12 2020-04-23
 Sweden hCoV-19/Sweden/20-50315/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T

EPI_ISL_429256
 2020-03-12 2020-04-23
 Spain hCoV-19/Spain/Vircell001/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T A6248C C14408T A20268G A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_429289
 2020-03-12 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH31/2020
 C241T C1059T C1302T C3037T C14408T C14585T A23403G G25563T

EPI_ISL_429525
 2020-03-12 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI426/2020
 C241T C1059T C3037T C14408T G20275T A23403G G25563T

EPI_ISL_429811
 2020-03-12 2020-04-24
 Canada hCoV-19/Canada/NB_21/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G C25433T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_430114 MT627613
 2020-03-12 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S260/2020
 C8782T C17747T A17858G C18060T T27222C T27384C T28144C

EPI_ISL_430127 MT627636
 2020-03-12 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S273/2020
 C1419T C8782T G14126A C17747T A17858G C18060T T28144C

EPI_ISL_430175 MT632562
 2020-03-12 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S138/2020
 C8782T C17747T A17858G C18060T A24667G T28144C

EPI_ISL_430176 MT632595
 2020-03-12 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S139/2020
 C8782T C17747T A17858G C18060T T23010C T28144C

EPI_ISL_430177 MT632598
 2020-03-12 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S140/2020
 C8782T C17747T A17858G C18060T T23010C T28144C

EPI_ISL_430854
 2020-03-12 2020-04-28
 Sweden hCoV-19/Sweden/20-08171/2020
 C241T C3037T A13947T C14408T A23403G GGG28881AAC

EPI_ISL_430855
 2020-03-12 2020-04-28
 Sweden hCoV-19/Sweden/20-08172/2020
 C241T C1059T C3037T C14408T G20419T A23403G G25563T C26895T

EPI_ISL_430877 MT412248
 2020-03-12 2020-04-28
 United States SARS-CoV-2/human/USA/WA-UW-524/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A31T C36T C8782T C17747T A17858G C18060T T28144C CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_430880 MT412247
 2020-03-12 2020-04-28
 United States SARS-CoV-2/human/USA/WA-UW-530/2020
 A1- T3G A31T C36T C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_430883 MT412250
 2020-03-12 2020-04-28
 United States SARS-CoV-2/human/USA/WA-UW-542/2020
 ATTAAAGGTTT1- TA13AG C16A T18G AG22GA C36Y C8782T C17747T A17858G C18060T T28144C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_430884 MT412249
 2020-03-12 2020-04-28
 United States SARS-CoV-2/human/USA/WA-UW-543/2020
 ATTAAA1- C36T C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_430885 MT412251
 2020-03-12 2020-04-28
 United States SARS-CoV-2/human/USA/WA-UW-546/2020
 ATTAA1- A31T C36T C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_430889 MT412244
 2020-03-12 2020-04-28
 United States SARS-CoV-2/human/USA/WA-UW-572/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A31W AC35HT C8782T C17747T A17858G C18060T G22984A T27384C T28144C -29904AAAAAAAAAA

EPI_ISL_430890 MT412243
 2020-03-12 2020-04-28
 United States SARS-CoV-2/human/USA/UNKNOWN-UW-581/2020
 ATTAAAGGTTT1- A31W C36T C8782T C17747T A17858G C18060T T28144C A28910T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_430891 MT412236
 2020-03-12 2020-04-28
 United States SARS-CoV-2/human/USA/WA-UW-586/2020
 ATTAAAGGTTTATAC1- CCCAGGTAACAAACCAA19- C36T C241T T833C C1059T C3037T G11222T C14408T C14676T A23403G G25563T C27964T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_430892 MT412238
 2020-03-12 2020-04-28
 United States SARS-CoV-2/human/USA/WA-UW-596/2020
 ATTAAAGGTTTATACCTTCCCA1- C36T C8782T C17747T A17858G C18060T C18788T C21306T A27525G T28144C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_430893 MT412240
 2020-03-12 2020-04-28
 United States SARS-CoV-2/human/USA/WA-UW-600/2020
 ATTAAAGGTTTATA1- A34W C36T C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_430894 MT412237
 2020-03-12 2020-04-28
 United States SARS-CoV-2/human/USA/WA-UW-602/2020
 ATTAAAGGTTTAT1- A14T CCCAGGTAACAAACCAA19- C36T C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_434467
 2020-03-12 2020-04-29
 Greece hCoV-19/Greece/141/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T C16073T A23403G GGG28881AAC C28887T TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_434472
 2020-03-12 2020-04-29
 Greece hCoV-19/Greece/139/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGG28881AAC TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_434485
 2020-03-12 2020-04-29
 Greece hCoV-19/Greece/150/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C2508T G9190T G11083T C14805T G15919T T17247C G26144T G26172A TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_434646
 2020-03-12 2020-04-30
 Sweden hCoV-19/Sweden/20-05653/2020
 C241T C1059T C1093T C1302T C2197T C3037T C14408T A23403G G25563T

EPI_ISL_435060
 2020-03-12 2020-05-02
 India hCoV-19/India/NCDC-01257/2020
 C241T C1601A C2040T C3037T T6552K T8022K T12339Y C14408T G16917K C17885Y C18377M T18690K A20255R T22515Y A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_435119
 2020-03-12 2020-05-03
 United Arab Emirates hCoV-19/United Arab Emirates/L0/2020
 C241T C1059T C3037T C14408T C21781T A23403G G25563T G26775T C29415T

EPI_ISL_435123
 2020-03-12 2020-05-03
 United Arab Emirates hCoV-19/United Arab Emirates/L0484/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_435130
 2020-03-12 2020-05-03
 United Arab Emirates hCoV-19/United Arab Emirates/L2185/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_435140
 2020-03-12 2020-05-03
 United Arab Emirates hCoV-19/United Arab Emirates/L7356/2020
 C241T C3037T G4201T C14408T A23403G C26527T

EPI_ISL_435141
 2020-03-12 2020-05-03
 United Arab Emirates hCoV-19/United Arab Emirates/L9440/2020
 C241T C1997T C3037T C8290T C14408T C17678T A23403G A24110T

EPI_ISL_435639
 2020-03-12 2020-05-05
 United States hCoV-19/USA/CA-SCCPHD-UC160/2020
 G29711T

EPI_ISL_435641
 2020-03-12 2020-05-05
 United States hCoV-19/USA/CA-SCCPHD-UC162/2020
 C26032T G29711T

EPI_ISL_435643
 2020-03-12 2020-05-05
 United States hCoV-19/USA/CA-SCCPHD-UC164/2020
 C241T C3037T C13517T C14408T A23403G C25350T

EPI_ISL_436210
 2020-03-12 2020-05-06
 Spain hCoV-19/Spain/Valencia115/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G11083T G26144T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_436211
 2020-03-12 2020-05-06
 Spain hCoV-19/Spain/Valencia116/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C8782T T9477A A10323G C14805T G24928T G25979T T28144C C28657T C28863T G29742A TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_436295
 2020-03-12 2020-05-06
 Spain hCoV-19/Spain/Valencia200/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C14408T A23403G C29144T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_436808 MT439237
 2020-03-12 2020-05-06
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20179/2020
 ATTAAAGGTT1- C241T C1059T C3037T A5011M T9046C C14408T T19584Y A23403G G25563T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_437211
 2020-03-12 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0010/2020
 C241T C3037T C12756T C14408T A23403G C28121T

EPI_ISL_437218
 2020-03-12 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0017/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_437223
 2020-03-12 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0023/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_437249
 2020-03-12 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0050/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_437250
 2020-03-12 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0051/2020
 C241T C3037T A7881G C14408T A23403G C27046T C28344A GGG28881AAC

EPI_ISL_437609 MT447169
 2020-03-12 2020-05-01
 Thailand SARS-CoV-2/human/THA/SI204514-NT/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- A895G C2942T G4390T C8782T C9598T G20134T G24047A T28144C CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

EPI_ISL_437610 MT447168
 2020-03-12 2020-05-01
 Thailand SARS-CoV-2/human/THA/SI204512-NT/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- G90T C241T C3037T C14408T G20398A C21156T A23403G G24056T A26530G CGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29733-

EPI_ISL_437876 MT459870
 2020-03-12 2020-05-11
 Greece SARS-CoV-2/human/GRC/202_32984/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGG28881AAC C28887T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_437877 MT459872
 2020-03-12 2020-05-11
 Greece SARS-CoV-2/human/GRC/204_33112/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C2434T C3037T C14408T A23403G C25350T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_437921
 2020-03-12 2020-05-12
 Austria hCoV-19/Austria/CeMM0032/2020
 C241T C1059T C3037T C14117T C14408T A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_437922
 2020-03-12 2020-05-12
 Austria hCoV-19/Austria/CeMM0033/2020
 C241T C1059T C3037T C14408T T22521K A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_437940
 2020-03-12 2020-05-12
 Austria hCoV-19/Austria/CeMM0068/2020
 C241T C3037T G4255T C14408T A23403G A26530R AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_437968
 2020-03-12 2020-05-12
 Austria hCoV-19/Austria/CeMM0109/2020
 C241T C3037T C14408T C15324T A23403G A23558G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_437969
 2020-03-12 2020-05-12
 Austria hCoV-19/Austria/CeMM0111/2020
 C241T C3037T C14408T A23403G GGG28881AAC G29540T AAAAAAAAAAAAAAAAAAA29885-

EPI_ISL_443198
 2020-03-12 2020-05-12
 Singapore hCoV-19/Singapore/106/2020
 C241T C1059T C3037T C14408T G15760A A23403G G25563T AAAAAAAAAAAA29892-

EPI_ISL_444519 EPI_ISL_454691
 2020-03-12 2020-05-28
 United States hCoV-19/USA/NY-QDX-01-2/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_445109
 2020-03-12 2020-05-15
 United States hCoV-19/USA/CA-SR0118/2020
 C884T G1397A G8653T G11083T C20628T A25980C T28688C G29742T

EPI_ISL_445264
 2020-03-12 2020-05-15
 Chile hCoV-19/Chile/Santiago_21/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C14408T C19170T G19509A A23403G GGG28881AAC C29109T TCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29834C

EPI_ISL_445266
 2020-03-12 2020-05-15
 Chile hCoV-19/Chile/Antofagasta_1/2020
 ATTA1GAAT C8090T C8782T C13115T C13665T A19667G T25541C C26088T A27797R T28144C GGAGAAT29861- AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_445267
 2020-03-12 2020-05-15
 Chile hCoV-19/Chile/Antofagasta_2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C8782T C13115T C13665T T25541C C26088T T28144C ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_445331
 2020-03-12 2020-05-15
 Chile hCoV-19/Chile/Chillan_2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T G10265A C14408T A23403G GGG28881AAC ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_445333
 2020-03-12 2020-05-15
 Chile hCoV-19/Chile/Concepcion_2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- A34G C241T C3037T C12546T C14408T A20268G A23403G CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838T

EPI_ISL_445357
 2020-03-12 2020-05-15
 Chile hCoV-19/Chile/Santiago_61/2020
 TT2CA -AG5CCA -14GATCCTTTGCA -18GAATTAGACTCA C241T G1319A C3037T C8389T C14408T A23403G G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_447636 MT459871
 2020-03-12 2020-05-11
 Greece SARS-CoV-2/human/GRC/203_33026/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_450086
 2020-03-12 2020-05-20
 United States hCoV-19/USA/NY-PV09406/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450090
 2020-03-12 2020-05-20
 United States hCoV-19/USA/NY-PV09410/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCT1- C241T C1059T C3037T C14408T A23403G G25563T GTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29759-

EPI_ISL_450094
 2020-03-12 2020-05-20
 United States hCoV-19/USA/NY-PV09414/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T C3037T G10265A C14408T A23403G GGG28881AAC AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450095
 2020-03-12 2020-05-20
 United States hCoV-19/USA/NY-PV09415/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450098
 2020-03-12 2020-05-20
 United States hCoV-19/USA/NY-PV09419/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G G25563T C25688A GCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29773-

EPI_ISL_450102
 2020-03-12 2020-05-20
 United States hCoV-19/USA/NY-PV09423/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C2676T T6329C C8782T A22606T T28144C G28878A G29742A AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450106
 2020-03-12 2020-05-20
 United States hCoV-19/USA/NY-PV09429/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450107
 2020-03-12 2020-05-20
 United States hCoV-19/USA/NY-PV09430/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C3037T G4255T C14408T T16456G C20051T A23403G A26530G AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450109
 2020-03-12 2020-05-20
 United States hCoV-19/USA/NY-PV09432/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTT1- C241T C506T C3037T C14408T A20268G A23403G AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_450118
 2020-03-12 2020-05-20
 United States hCoV-19/USA/NY-PV09441/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_450121
 2020-03-12 2020-05-20
 United States hCoV-19/USA/NY-PV09446/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATC1- C241T C1059T C3037T C14408T A23403G G25563T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_450834
 2020-03-12 2020-05-22
 Sweden hCoV-19/Sweden/20-08168/2020
 C241T C1059T C3037T C14408T G17721T C21952T A23403G G25563T C27294T

EPI_ISL_451669 LR824229
 2020-03-12 2020-05-25
 Switzerland 100076
 C241T C3037T A5958G C14408T C15324T C22413Y A23403G

EPI_ISL_451688 LR824243
 2020-03-12 2020-05-25
 Switzerland 100096
 C241T C1059T C3037T C14408T G15380K A19298W T22516W A23403G G25563T

EPI_ISL_452025
 2020-03-12 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-148/2020
 C241T C1059T C1302T C3037T C14408T A23403G G25563T

EPI_ISL_452331
 2020-03-12 2020-05-27
 China hCoV-19/Beijing/DT-travelCA01/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_452333
 2020-03-12 2020-05-27
 China hCoV-19/Beijing/DT-travelIRI01/2020
 C16A C884T G1397A T8022G G8653T T20891G T28688C G29742T

EPI_ISL_452342
 2020-03-12 2020-05-27
 China hCoV-19/Beijing/DT-travelNO01/2020
 A23403G AG24389CC G28881A

EPI_ISL_452344
 2020-03-12 2020-05-27
 China hCoV-19/Beijing/DT-travelES02/2020
 C203T T8395A C14805T A22151G G25979T T28144C C28657T C28863T

EPI_ISL_452531
 2020-03-12 2020-05-27
 Spain hCoV-19/Spain/COV001370/2020
 C241T C3037T C4058T A7807R C14408T A20268G A23403G G28881T G29734C

EPI_ISL_452535
 2020-03-12 2020-05-27
 Spain hCoV-19/Spain/COV001366/2020
 C2040T C8782T G11083T C26088T T28144C

EPI_ISL_454006
 2020-03-12 2020-05-28
 Portugal hCoV-19/Portugal/PT0290/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3140T C14408T A23403G G24077T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454009
 2020-03-12 2020-05-28
 Portugal hCoV-19/Portugal/PT0293/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- C241T C3037T C14408T A23403G G24077T CGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29754-

EPI_ISL_454787
 2020-03-12 2020-05-29
 Netherlands hCoV-19/Netherlands/Utrecht_10038/2020
 ATTAAA1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T A28305G GGG28881AAC AAAAAA29898-

EPI_ISL_454944
 2020-03-12 2020-05-29
 China hCoV-19/Wuhan/HB-WH3-183/2020
 A9243G G11083T

EPI_ISL_454983
 2020-03-12 2020-05-29
 China hCoV-19/Wuhan/HB-WH6-246/2020
 C15981T T26729C G28077C T28144C

EPI_ISL_455122
 2020-03-12 2020-05-29
 Netherlands hCoV-19/Netherlands/Gelderland_13/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C829T C1594T C3037T C11109T G14241T C14408T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455123
 2020-03-12 2020-05-29
 Netherlands hCoV-19/Netherlands/Gelderland_14/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C11109T C12073T C14408T C16049T A23403G G25563T A27440C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455292
 2020-03-12 2020-05-29
 Netherlands hCoV-19/Netherlands/Utrecht_24/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5310T C14408T G18907T G20940A A23403G C24382T C27046T GGG28881AAC G29751C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455293
 2020-03-12 2020-05-29
 Netherlands hCoV-19/Netherlands/Utrecht_25/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C3037T C14408T C16017T T16515C A23403G G27074A GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455380
 2020-03-12 2020-05-29
 China hCoV-19/Wuhan/HB-WH3-184/2020
 TG14865- C22482T

EPI_ISL_455436
 2020-03-12 2020-05-29
 Mexico hCoV-19/Mexico/CDMX-InDRE_12/2020
 ATTAAAGGTTTA1- C241T C1387T C3037T C14408T A20268G A23403G G25337T G29734C TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_455456
 2020-03-12 2020-05-29
 Mexico hCoV-19/Mexico/CDMX-InDRE_18/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C8782T C26088T T28144C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_455624
 2020-03-12 2020-06-01
 Thailand hCoV-19/Thailand/Bangkok_2295/2020
 A895G C2942T G4390T C8782T C9598T G20134T G24047A T28144C AAAAAAAAAAAA29892-

EPI_ISL_455922
 2020-03-12 2020-06-01
 Thailand hCoV-19/Thailand/Bangkok-CONI-0128/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- G11083T C14805T T17247C G26144T

EPI_ISL_455925
 2020-03-12 2020-06-01
 Thailand hCoV-19/Thailand/Bangkok-CONI-0131/2020
 ATTAAAG1- A895G C2942T C3768Y G4390T C8782T C9598T G20134T G24047A G27877T T28144C C29245Y

EPI_ISL_457154
 2020-03-12 2020-06-02
 United Kingdom hCoV-19/England/EXET-135CC1/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_457721
 2020-03-12 2020-06-02
 Italy hCoV-19/Italy/4411/2020
 C241T C3037T C14408T A23403G GGG28881AAC AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_459863
 2020-03-12 2020-06-04
 Chile hCoV-19/Chile/Talca-25343/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462255
 2020-03-12 2020-06-08
 Belgium hCoV-19/Belgium/REGA-0312401/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1457T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_464793
 2020-03-12 2020-06-11
 United Kingdom hCoV-19/England/201160271/2020
 C241T C3037T GT5743SY C14408T C16289T A23403G G25429T

EPI_ISL_464800
 2020-03-12 2020-06-11
 United Kingdom hCoV-19/England/201160647/2020
 C241T C3037T C14408T A23403G A26530R

EPI_ISL_464852
 2020-03-12 2020-06-11
 United Kingdom hCoV-19/England/201161525/2020
 ATG1605-

EPI_ISL_464874
 2020-03-12 2020-06-11
 United Kingdom hCoV-19/England/201180001/2020
 C241T C3037T C14408T T17835C A23403G

EPI_ISL_464879
 2020-03-12 2020-06-11
 United Kingdom hCoV-19/England/201180067/2020
 C936T -11075TTT G11083T C14318T C14805T C23707T G26144T

EPI_ISL_464939
 2020-03-12 2020-06-11
 United Kingdom hCoV-19/England/20118070604/2020
 A2480G C2558T G11083T C14805T G26144T

EPI_ISL_464958
 2020-03-12 2020-06-11
 United Kingdom hCoV-19/England/20118123004/2020
 C241T C3037T C3373A C11195T C14408T A23403G GGG28881AAC A29467T

EPI_ISL_464972
 2020-03-12 2020-06-11
 United Kingdom hCoV-19/England/20118143104/2020
 G1440A G2891R C10507T G11299T C19113T G28077T

EPI_ISL_464973
 2020-03-12 2020-06-11
 United Kingdom hCoV-19/England/20118143704/2020
 A2480G C2558T G4105K T10480C G11083T C14805T T26130C G26144T C27559T

EPI_ISL_464976
 2020-03-12 2020-06-11
 United Kingdom hCoV-19/England/20118147904/2020
 G11083T C14805T T17247C G26144T

EPI_ISL_464978
 2020-03-12 2020-06-11
 United Kingdom hCoV-19/England/20118148804/2020
 ATG1605- C10450Y

EPI_ISL_464979
 2020-03-12 2020-06-11
 United Kingdom hCoV-19/England/20118151104/2020
 A2480G C2558T G11083T C14805T T16309C G26144T

EPI_ISL_464980
 2020-03-12 2020-06-11
 United Kingdom hCoV-19/England/20118151404/2020
 A2480G C2558T G11083T C14805T G26144T

EPI_ISL_464985
 2020-03-12 2020-06-11
 United Kingdom hCoV-19/England/20118158504/2020
 G11083T C14805T C23707T G26144T

EPI_ISL_464989
 2020-03-12 2020-06-11
 United Kingdom hCoV-19/England/20118164704/2020
 C21T G1413R A1515G C9223T -11075TTT G11083T C14805T T17247C C17626T C19781Y G26144T

EPI_ISL_465001
 2020-03-12 2020-06-11
 United Kingdom hCoV-19/England/20119000304/2020
 C241T C3037T C14408T A23403G A26530R G29468T

EPI_ISL_465002
 2020-03-12 2020-06-11
 United Kingdom hCoV-19/England/20119000404/2020
 C241T C3037T C3373A C11195T C14408T C17440T T20123C A23403G GGG28881AAC

EPI_ISL_465030
 2020-03-12 2020-06-11
 United Kingdom hCoV-19/England/20119011704/2020
 A187G C241T C3037T C14408T C14741T A23403G

EPI_ISL_465039
 2020-03-12 2020-06-11
 United Kingdom hCoV-19/England/20119029504/2020
 C241T C3037T C3373A C11195T C14408T C15216T A23403G GGG28881AAC

EPI_ISL_465046
 2020-03-12 2020-06-11
 United Kingdom hCoV-19/England/20119032104/2020
 C241T C3037T C3373A C11195T C14408T A23403G GGG28881AAC

EPI_ISL_465049
 2020-03-12 2020-06-11
 United Kingdom hCoV-19/England/20119033504/2020
 C66T C7334T A7479G C9144Y G11083T C14805T C15222T T17247C C21575T C25572T G26144T

EPI_ISL_465065
 2020-03-12 2020-06-11
 United Kingdom hCoV-19/England/20119044404/2020
 A2480G C2558T G11083T C14805T C18348T T19728Y C23557T G26144T

EPI_ISL_465083
 2020-03-12 2020-06-11
 United Kingdom hCoV-19/England/20119059404/2020
 C241T C3037T C13511T C14408T A23403G GGG28881AAC

EPI_ISL_465091
 2020-03-12 2020-06-11
 United Kingdom hCoV-19/England/20119064904/2020
 G11083T C14805T T17247C G26144T

EPI_ISL_466977 LR824093
 2020-03-12 2020-06-12
 Switzerland 100055
 C241T C3037T C12085Y C14408T C15324T A15887M G16188T T19350W C22413M A23403G

EPI_ISL_466979 LR824097
 2020-03-12 2020-06-12
 Switzerland 100057
 C241T C3037T C14408T A20268G G21538K A22411R A23403G C28854T

EPI_ISL_466980 LR824088
 2020-03-12 2020-06-12
 Switzerland 100058
 C241T C3037T A12825R C14408T C15324T C22347S T22372Y A23403G C28854T

EPI_ISL_466991 LR824101
 2020-03-12 2020-06-12
 Switzerland 100069
 C241T C3037T C4901T C6286T C14408T A19298W C19318Y C19360Y A23403G GGG28881AAC

EPI_ISL_466995 LR824099
 2020-03-12 2020-06-12
 Switzerland 100073
 C241T C3037T A8072G C14408T A19298W T19316Y G19507K A23403G GGG28881AAC C29739T

EPI_ISL_467090
 2020-03-12 2020-06-12
 Spain hCoV-19/Spain/COV002595/2020
 C241T C3037T C12242T C14408T T19839C A23403G GGG28881AAC

EPI_ISL_467097
 2020-03-12 2020-06-12
 Spain hCoV-19/Spain/COV001531/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T C29870A

EPI_ISL_467103
 2020-03-12 2020-06-12
 Spain hCoV-19/Spain/COV001587/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T C29870A

EPI_ISL_467113
 2020-03-12 2020-06-12
 Spain hCoV-19/Spain/COV001566/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T

EPI_ISL_467114
 2020-03-12 2020-06-12
 Spain hCoV-19/Spain/COV001553/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T

EPI_ISL_467116
 2020-03-12 2020-06-12
 Spain hCoV-19/Spain/COV001560/2020
 A4293G C8782T T9477A C14805T A23586G G25979T T28144C C28657T C28706T C28863T C29870A

EPI_ISL_467126
 2020-03-12 2020-06-12
 Spain hCoV-19/Spain/COV001601/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T

EPI_ISL_467129
 2020-03-12 2020-06-12
 Spain hCoV-19/Spain/COV001588/2020
 C8782T T9477A G11083T C14805T G25979T T28144C C28657T C28863T C29870A

EPI_ISL_467132
 2020-03-12 2020-06-12
 Spain hCoV-19/Spain/COV001600/2020
 C8782T T9477A C14805T G25244T G25979T T28144C C28657T C28863T

EPI_ISL_467134
 2020-03-12 2020-06-12
 Spain hCoV-19/Spain/COV001611/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T

EPI_ISL_467153
 2020-03-12 2020-06-12
 Spain hCoV-19/Spain/COV001612/2020
 C8782T T9477A C14805T C21997T G25979T T28144C C28657T C28863T C29870A

EPI_ISL_467158
 2020-03-12 2020-06-12
 Spain hCoV-19/Spain/COV001610/2020
 C8782T T9477A C14805T C17410T G25979T T28144C G28643A C28657T C28863T C29870A

EPI_ISL_467165
 2020-03-12 2020-06-12
 Spain hCoV-19/Spain/COV001606/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T C29870A

EPI_ISL_467172
 2020-03-12 2020-06-12
 Spain hCoV-19/Spain/COV001558/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T

EPI_ISL_467599
 2020-03-12 2020-06-14
 United States hCoV-19/USA/NM-UNM-00018/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_467915 MT614510
 2020-03-12 2020-06-15
 United States SARS-CoV-2/human/USA/UT-QDX-17/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T TAG423- C1059T C1887T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467917 MT614512
 2020-03-12 2020-06-15
 United States SARS-CoV-2/human/USA/UT-QDX-20/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17747T A17858G C18060T A24694T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467920 MT614515
 2020-03-12 2020-06-15
 United States SARS-CoV-2/human/USA/UT-QDX-57/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C8782T T18736C C24034T T26729C G28077C T28144C A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467964
 2020-03-12 2020-06-16
 United States hCoV-19/USA/CA-SR0436/2020
 G7798T C8782T C17747T A17858G C18060T C20148T T28144C

EPI_ISL_468572 MT627419
 2020-03-12 2020-06-16
 United States SARS-CoV-2/human/USA/CO-QDX-89/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_468573 MT627420
 2020-03-12 2020-06-16
 United States SARS-CoV-2/human/USA/HI-QDX-163/2020
 C241T C1059T C3037T C14408T G15760A A23403G G25563T

EPI_ISL_468574 MT627421
 2020-03-12 2020-06-16
 United States SARS-CoV-2/human/USA/HI-QDX-164/2020
 C241T C1059T C3037T C14408T G15760A A23403G G25563T

EPI_ISL_468575 MT627422
 2020-03-12 2020-06-16
 United States SARS-CoV-2/human/USA/IN-QDX-85/2020
 ATTAAAG1- C241T C3037T C14408T A23403G

EPI_ISL_468576 MT627423
 2020-03-12 2020-06-16
 United States SARS-CoV-2/human/USA/NY-QDX-100/2020
 ATTAAAGGTTTATACC1- C241T C3037T C14408T C18877T A23403G G25563T

EPI_ISL_468577 MT627424
 2020-03-12 2020-06-16
 United States SARS-CoV-2/human/USA/NY-QDX-102/2020
 C241T C1059T C3037T C14408T A23403G G25563T C29364T

EPI_ISL_468578 MT627425
 2020-03-12 2020-06-16
 United States SARS-CoV-2/human/USA/NY-QDX-105/2020
 ATTAAAGGTT1- C206T A2480G C2558T G11083T G11851T C14805T C17010A A20979T C21575T G26144T

EPI_ISL_468579 MT627426
 2020-03-12 2020-06-16
 United States SARS-CoV-2/human/USA/NY-QDX-106/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_468580 MT627427
 2020-03-12 2020-06-16
 United States SARS-CoV-2/human/USA/NY-QDX-108/2020
 G2305T G11083T G11108T C14805T A15779C T17247C T19506C G26144T

EPI_ISL_468581 MT627428
 2020-03-12 2020-06-16
 United States SARS-CoV-2/human/USA/NY-QDX-109/2020
 C241T C1059T C3037T C3253T C8770T C14408T A23403G G25563T

EPI_ISL_468582 MT627429
 2020-03-12 2020-06-16
 United States SARS-CoV-2/human/USA/NY-QDX-87/2020
 C241T C1059T C3037T C11289T CC14407TT A23403G G25563T C29509T

EPI_ISL_468583 MT627430
 2020-03-12 2020-06-16
 United States SARS-CoV-2/human/USA/NY-QDX-88/2020
 C241T C1059T C3037T C4246T C14408T A23403G G25563T

EPI_ISL_468584 MT627431
 2020-03-12 2020-06-16
 United States SARS-CoV-2/human/USA/NY-QDX-90/2020
 C241T C1059T C3037T C5142T C14408T A23403G G25563T

EPI_ISL_468585 MT627432
 2020-03-12 2020-06-16
 United States SARS-CoV-2/human/USA/NY-QDX-91/2020
 C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_468586 MT627433
 2020-03-12 2020-06-16
 United States SARS-CoV-2/human/USA/NY-QDX-94/2020
 ATTAAAGGTTTATACCTTCCC1- C241T C3037T C8917T C14408T C18877T A23403G G25563T

EPI_ISL_468587 MT627434
 2020-03-12 2020-06-16
 United States SARS-CoV-2/human/USA/NY-QDX-95/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_474910
 2020-03-12 2020-06-23
 Spain hCoV-19/Spain/Las_Palmas-COV002593/2020
 C241T C2094T C3037T A10323G C14408T C14980T A20268G A23403G

EPI_ISL_475085
 2020-03-12 2020-06-23
 Sweden hCoV-19/Sweden/20-08174/2020
 C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_475128
 2020-03-12 2020-06-23
 Sweden hCoV-19/Sweden/20-50298/2020
 C241T C1059T C3037T A10633C C14408T A23403G G24368T G25563T

EPI_ISL_475129
 2020-03-12 2020-06-23
 Sweden hCoV-19/Sweden/20-50299/2020
 C241T C3037T C10376T C14408T A23403G GGG28881AAC

EPI_ISL_475130
 2020-03-12 2020-06-23
 Sweden hCoV-19/Sweden/20-50301/2020
 C241T C3037T A12790G C13568T C14408T A23403G

EPI_ISL_475131
 2020-03-12 2020-06-23
 Sweden hCoV-19/Sweden/20-50304/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_475132
 2020-03-12 2020-06-23
 Sweden hCoV-19/Sweden/20-50305/2020
 G1440A G2891A C7011T

EPI_ISL_475133
 2020-03-12 2020-06-23
 Sweden hCoV-19/Sweden/20-50307/2020
 C241T C1059T C3037T C14408T C19263T A23403G G25563T

EPI_ISL_475134
 2020-03-12 2020-06-23
 Sweden hCoV-19/Sweden/20-50308/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_475135
 2020-03-12 2020-06-23
 Sweden hCoV-19/Sweden/20-50313/2020
 C241T C1059T C3037T C14408T G15380T A23403G G25563T

EPI_ISL_475912
 2020-03-12 2020-06-25
 Austria hCoV-19/Austria/CeMM0562/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3177M C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476906 MT827823
 2020-03-12 2020-06-27
 United States SARS-CoV-2/human/USA/WA-UW-571/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C8782T C16726T C17747T A17858G C18060T T28144C T29410C C29769T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_476910
 2020-03-12 2020-06-27
 United States hCoV-19/USA/UN-UW-629/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAG1- C2061T C8782T C17747T A17858G C18060T G21305A T23010C T28144C TG29867AA -29904AAAAAAAAAAAAAAA

EPI_ISL_476911 MT827831
 2020-03-12 2020-06-27
 United States SARS-CoV-2/human/USA/WA-UW-631/2020
 A1- AA4CT TCAC95ATGA C241T C1059T C3037T C14408T A23403G G25563T C26270T G29553A -29904AAAA

EPI_ISL_476914 MT827832
 2020-03-12 2020-06-27
 United States SARS-CoV-2/human/USA/CT-UW-649/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTG1- C241T C3037T C14408T A23403G GGG28881AAC C29870A

EPI_ISL_476919
 2020-03-12 2020-06-27
 United States hCoV-19/USA/UN-UW-659/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCT1- C241T C1059T C3037T C14408T A23403G G25563T -29904AAAAAAAAAAAAA

EPI_ISL_476920 MT827815
 2020-03-12 2020-06-27
 United States SARS-CoV-2/human/USA/WA-UW-661/2020
 ATTAAAGGTTTATACCTTCC1- C36T C8782T C17747T A17858G C18060T T28144C -29904AAAAAAAAA

EPI_ISL_476922
 2020-03-12 2020-06-27
 United States hCoV-19/USA/UN-UW-666/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- TCAC95ATGA C8782T C17747T A17858G C18060T T23010C G25471T T28144C -29904AAAAAAAAAAAAAAAA

EPI_ISL_476923
 2020-03-12 2020-06-27
 United States hCoV-19/USA/UN-UW-667/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACG1- C8782T C17747T A17858G C18060T T23010C T28144C -29904AAAAAAAAAAAA

EPI_ISL_476924 MT827811
 2020-03-12 2020-06-27
 United States SARS-CoV-2/human/USA/WA-UW-669/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C8782T C15720T C17747T A17858G C18060T T28144C TG29867AA C29870A

EPI_ISL_476925 MT827813
 2020-03-12 2020-06-27
 United States SARS-CoV-2/human/USA/WA-UW-671/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C36T C8782T C17747T A17858G C18060T T28144C -29904AAAAAAAAAAAAAAAA

EPI_ISL_476926
 2020-03-12 2020-06-27
 United States hCoV-19/USA/UN-UW-672/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C2061T C8782T C17747T A17858G C18060T T23010C T28144C

EPI_ISL_476931 MT827835
 2020-03-12 2020-06-27
 United States SARS-CoV-2/human/USA/CT-UW-685/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C3037T C14408T A23403G GGG28881AAC -29904AAAAAAAAAAAAAA

EPI_ISL_476932
 2020-03-12 2020-06-27
 United States hCoV-19/USA/UN-UW-686/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- AACC34TTTH C2061T C8782T C10641T C17747T A17858G C18060T T23010C T28144C -29904AAAAAAAAAAAAAA

EPI_ISL_476936 MT827818
 2020-03-12 2020-06-27
 United States SARS-CoV-2/human/USA/WA-UW-753/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAG1- C8782T C11704T C17747T A17858G C18060T T22020C T28144C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_479855
 2020-03-12 2020-07-01
 Japan hCoV-19/Japan/PG-0128/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C8782T G16381A T17877C T28144C G28878A G29742A TGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29829-

EPI_ISL_479856
 2020-03-12 2020-07-01
 Japan hCoV-19/Japan/PG-0130/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C8782T G16381A T17877C T28144C G28878A G29742A AGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29827-

EPI_ISL_479857
 2020-03-12 2020-07-01
 Japan hCoV-19/Japan/PG-0131/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C8782T G16381A T17877C T28144C G28878A G29742A AATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29818-

EPI_ISL_479858
 2020-03-12 2020-07-01
 Japan hCoV-19/Japan/PG-0132/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C8782T G16381A T17877C C27297T T28144C G28878A G29742A TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_479859
 2020-03-12 2020-07-01
 Japan hCoV-19/Japan/PG-0133/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C8782T G16381A T17877C T28144C G28878A G29742A AATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29818-

EPI_ISL_479862
 2020-03-12 2020-07-01
 Japan hCoV-19/Japan/PG-0139/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- A3132G C4776T G11083T G11410A G14268A C21711T A23941G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479873
 2020-03-12 2020-07-01
 Japan hCoV-19/Japan/PG-0163/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C5512T G11083T C11752T C19170A G28857T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_479874
 2020-03-12 2020-07-01
 Japan hCoV-19/Japan/PG-0164/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C5512T G11083T C11752T C19170A G28857T TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_479875
 2020-03-12 2020-07-01
 Japan hCoV-19/Japan/PG-0165/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C11752T C17825T C19170A C24334T C29614T C29724T TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_479876
 2020-03-12 2020-07-01
 Japan hCoV-19/Japan/PG-0166/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C11752T C19170A C24334T C29614T TTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29820-

EPI_ISL_479877
 2020-03-12 2020-07-01
 Japan hCoV-19/Japan/PG-0167/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C5691T C11752T C19170A ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_479923
 2020-03-12 2020-07-01
 Japan hCoV-19/Japan/PG-0224/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACT1- A2160G T4402C G5062T C8782T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479999
 2020-03-12 2020-07-01
 Japan hCoV-19/Japan/PG-0324/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C241T C3037T G14140T C14408T A23403G A25167C C29769T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480103
 2020-03-12 2020-07-01
 Japan hCoV-19/Japan/PG-0437/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C8782T G16381A T17877C T19420C T28144C G28878A G29742A AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_480796 MT703963
 2020-03-12 2020-07-02
 United States SARS-CoV-2/human/USA/FL-BPHL-0145/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C8782T C17747T A17858G C18060T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481253
 2020-03-12 2020-07-03
 Germany hCoV-19/Germany/BW-RKI-N-0001/2020
 ATTAAAGGTTTAT1- C241T C3037T C11878T C14408T C15324T A23403G C23575T TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_482578
 2020-03-12 2020-07-04
 China hCoV-19/Hangzhou/HZCDC6445/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G C23575T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_482991
 2020-03-12 2020-07-06
 United States hCoV-19/USA/MN-MDH-1270/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C8782T T28144C G28878A G29742A AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_482992
 2020-03-12 2020-07-06
 United States hCoV-19/USA/MN-MDH-1271/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C1102T C8782T A17858G C18060T T28144C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_482993
 2020-03-12 2020-07-06
 United States hCoV-19/USA/MN-MDH-1272/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C3037T C14408T A23403G G25563T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_482996
 2020-03-12 2020-07-06
 United States hCoV-19/USA/MN-MDH-1275/2020
 ATTAAAGGTTTA1- C8782T C17010T A17858G C18060T T28144C GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_482997
 2020-03-12 2020-07-06
 United States hCoV-19/USA/MN-MDH-1276/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T C3037T C14408T A23403G G25563T TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_483718
 2020-03-12 2020-07-08
 Israel hCoV-19/Israel/n14264/2020
 C241T G625A C3037T G4412- G5200C TG5285- -6697T C6813T A8651C G9270C -10047T C12499T G12824- A12949T C13458T A13696T C14408T C18877T T18884C C19943A C20179T TG22483- A23403G T24948C G25563T

EPI_ISL_483720
 2020-03-12 2020-07-08
 Israel hCoV-19/Israel/n14265/2020
 C241T AA2514- C3037T T4546C C14408T C18877T G22487- A23403G G25563T

EPI_ISL_484191
 2020-03-12 2020-07-08
 United Kingdom hCoV-19/England/GSTT-265E368/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G C5170T C9223T G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485838 MT739444 MT913057
 2020-03-12 2020-07-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0537/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- A38R C8782T C17747T A17858G C18060T A24694T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_485840 MT739446 MT913059
 2020-03-12 2020-07-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0539/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C3037T C14408T TTA20339- A23403G G25563T

EPI_ISL_485842 MT739448 MT913061
 2020-03-12 2020-07-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0541/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C799T C1427T A8212G C8782T G8828A C17747T A17858G C18060T A24694T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_485844 MT739450 MT913063
 2020-03-12 2020-07-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0543/2020
 AT1- C3589T C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_485849 MT739455 MT913068
 2020-03-12 2020-07-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0548/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C3037T T11638C C14408T A23403G GGG28881AAC C29708T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_485850 MT739456 MT913069
 2020-03-12 2020-07-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0549/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T C1059T C3037T G10523C C12119T C14408T C18086A A23403G G25563T

EPI_ISL_485854 MT739460 MT913073
 2020-03-12 2020-07-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0553/2020
 ATT1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_485944
 2020-03-12 2020-07-10
 United States hCoV-19/USA/CT-UW-673/2020
 ATTAAAGGTTTAT1- TCT232CAC G237A C241T C3037T C14408T A23403G GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_485948
 2020-03-12 2020-07-10
 United States hCoV-19/USA/OR-UW-679/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAAC19- C37T C241T C1059T C3037T C14408T G14730A AA14732TG A17701T GC17706TA C21059T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_488466
 2020-03-12 2020-07-14
 United Kingdom hCoV-19/England/NORT-284178/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G256A C3037T C5310T G10097A C14408T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488737
 2020-03-12 2020-07-14
 United Kingdom hCoV-19/England/NORT-28414B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T T25202K G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488764
 2020-03-12 2020-07-14
 United Kingdom hCoV-19/England/NORT-281357/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488771
 2020-03-12 2020-07-14
 United Kingdom hCoV-19/England/NORT-281348/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G15380T C19934Y A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488806
 2020-03-12 2020-07-14
 United Kingdom hCoV-19/England/NORT-2813A2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T C18086T G26144T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492505
 2020-03-12 2020-07-20
 United Kingdom hCoV-19/England/BRIS-130B41/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T C17825T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492575
 2020-03-12 2020-07-20
 United Kingdom hCoV-19/England/BRIS-1309FC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- T6634Y C6696T C11001T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492672
 2020-03-12 2020-07-20
 United Kingdom hCoV-19/England/BRIS-130BBA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C13423T C14805T T17247C TGTAACTTTGAAGCAAGG25428- G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492694
 2020-03-12 2020-07-20
 United Kingdom hCoV-19/England/BRIS-1309ED/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C6696T T9642K C11001T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_494571
 2020-03-12 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1380/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T

EPI_ISL_494573
 2020-03-12 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1382/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C14408T A23403G

EPI_ISL_495118
 2020-03-12 2020-07-22
 United Kingdom hCoV-19/England/BRIS-1331A6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C14408T C14786T G20578T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498009
 2020-03-12 2020-07-26
 South Korea hCoV-19/Korea/KCDC2108/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- G5572T G11083T C14805T G26144T G27441T

EPI_ISL_498011
 2020-03-12 2020-07-26
 South Korea hCoV-19/Korea/KCDC2110/2020
 ATTA1- G5572T G11083T C14805T G26144T G27441T

EPI_ISL_498012
 2020-03-12 2020-07-26
 South Korea hCoV-19/Korea/KCDC2111/2020
 G5572T G11083T C14805T G26144T G27441T AAA29901-

EPI_ISL_498014
 2020-03-12 2020-07-26
 South Korea hCoV-19/Korea/KCDC2113/2020
 ATTA1- G5572T G11083T C14805T G26144T G27441T

EPI_ISL_498015
 2020-03-12 2020-07-26
 South Korea hCoV-19/Korea/KCDC2114/2020
 A1- G5572T G11083T G14055T C14805T G26144T

EPI_ISL_498016
 2020-03-12 2020-07-26
 South Korea hCoV-19/Korea/KCDC2115/2020
 AT1- G5572T G11083T C14805T G26144T G27441T

EPI_ISL_499816
 2020-03-12 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A4C46/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G431A ATG1605- C20270T C23114Y G26754A C28725T A29683T

EPI_ISL_500040
 2020-03-12 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A4763/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T G21624T A23403G GGG28881AAC

EPI_ISL_500055
 2020-03-12 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A4912/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T C3037T C14408T G15380T A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_500068
 2020-03-12 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A4AB5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A1321M C1567T G11083T C14805T T17247C G26144T

EPI_ISL_500073
 2020-03-12 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A4B2B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A1515G C9223T G11083T C14805T T17247C G26144T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_500083
 2020-03-12 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A4CDD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T G16075T T18689A C20031A C21614T A23403G C27046T GGG28881AAC

EPI_ISL_500084
 2020-03-12 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A4D16/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_500636
 2020-03-12 2020-07-29
 Australia hCoV-19/Australia/NSW2158/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C3037T C14408T A23403G CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_507049
 2020-03-12 2020-08-03
 United Kingdom hCoV-19/England/LOND-124D05D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- A2480G C2558T C7279T G11083T C14805T G26144T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_508765 MT834607
 2020-03-12 2020-08-04
 United States SARS-CoV-2/human/USA/FL-BPHL-0561/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_508873
 2020-03-12 2020-08-04
 France hCoV-19/France/ARA07910/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_508946
 2020-03-12 2020-08-04
 France hCoV-19/France/ARA08067/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTC1- C241T C1059T C3037T C14408T A23403G G25563T G28423A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_508947
 2020-03-12 2020-08-04
 France hCoV-19/France/ARA0814/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C241T T469C C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_510268
 2020-03-12 2020-08-06
 Spain hCoV-19/Spain/COV004025/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T T3331Y C12400T C14408T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_510320
 2020-03-12 2020-08-06
 Spain hCoV-19/Spain/COV005011/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A20268G A23403G CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_510323
 2020-03-12 2020-08-06
 Spain hCoV-19/Spain/COV005014/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C3037T C14408T A20268G A23403G CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_510325
 2020-03-12 2020-08-06
 Spain hCoV-19/Spain/COV005016/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C8782T C11651A C17470T C26088T T28144C CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_510424
 2020-03-12 2020-08-06
 Spain hCoV-19/Spain/COV006080/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C14408T G21786A A23403G G29009A AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_513415 MT886289
 2020-03-12 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0002/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGT1- C241T C1059T C3037T C14408T A23403G G25563T AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_515295
 2020-03-12 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0006/2020
 ATTA1- C8782T C17747T A17858G C18060T T28144C

EPI_ISL_515296
 2020-03-12 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0007/2020
 AT1- C241T C379A C1059T C3037T CC14407TT A23403G G25563T

EPI_ISL_516802
 2020-03-12 2020-08-24
 Singapore hCoV-19/Singapore/830/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6312A G11083T C13730T C23929T C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_523523
 2020-03-12 2020-08-26
 Netherlands hCoV-19/Netherlands/un-EMC-767/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C20148T A23403G G29422T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523524
 2020-03-12 2020-08-26
 Netherlands hCoV-19/Netherlands/un-EMC-768/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C20148T A23403G G29422T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523526
 2020-03-12 2020-08-26
 Netherlands hCoV-19/Netherlands/un-EMC-770/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C20148T A23403G G29422T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523937
 2020-03-12 2020-08-27
 Germany hCoV-19/Germany/NW-66/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A C9603T C26151T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_523948
 2020-03-12 2020-08-27
 Germany hCoV-19/Germany/NW-77/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9344T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_523966
 2020-03-12 2020-08-27
 Moldova hCoV-19/Moldova/ChVir7777/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_525603
 2020-03-12 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-13894-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_525604
 2020-03-12 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-13903-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T ATGGTCATGTTATGGTTG507- C1059T C3037T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_525605
 2020-03-12 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-13904-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_525606
 2020-03-12 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-13972-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T C26198T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_525607
 2020-03-12 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-13977-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C8782T C17747T A17858G C18060T A21944G T28144C TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_525608
 2020-03-12 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-13978-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T C18877T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_525609
 2020-03-12 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-14203-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C8782T C17747T A17858G C18060T T28144C TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_525610
 2020-03-12 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-14368-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G G25429T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_526937
 2020-03-12 2020-09-02
 Denmark hCoV-19/Faroe Islands/HFS-04/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1302T C3037T C6196T C14408T A23403G G25563T AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_528016
 2020-03-12 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42186690/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T C15324T A23403G AATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29849-

EPI_ISL_528020
 2020-03-12 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42187080/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528021
 2020-03-12 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42187348/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528022
 2020-03-12 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42187354/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T G22487C A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528024
 2020-03-12 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42187670/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G G24095T TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_528025
 2020-03-12 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42187831/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25563T TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_528027
 2020-03-12 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42187833/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25563T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_528028
 2020-03-12 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42187926/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528029
 2020-03-12 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42187936/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T G17722T A23403G AATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29849-

EPI_ISL_528030
 2020-03-12 2020-09-06
 Switzerland hCoV-19/Switzerland/AG-UHB-42187967/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G G28881T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528031
 2020-03-12 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42188011/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T G9190T C14408T G15380T A23403G G25563T TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_528032
 2020-03-12 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42188088/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G T26286C AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528033
 2020-03-12 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42188149/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T C17285T A23403G ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_528034
 2020-03-12 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42188447/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- A187G C241T C3037T C14408T A23403G G29050A GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_528037
 2020-03-12 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42188679/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_529961
 2020-03-12 2020-09-10
 Indonesia hCoV-19/Indonesia/JI-ITD-136N/2020
 ATTAAAGGTTT1- A20294G

EPI_ISL_534731
 2020-03-12 2020-09-14
 United States hCoV-19/USA/NY-WC-13741-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- T490A C3177T C8782T T18736C G19684T C24034T T26729C C27635T G28077C T28144C A29700G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_535731
 2020-03-12 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00215022/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1063T C3037T C14408T A23403G C28651T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535732
 2020-03-12 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00215586/2020
 ATTAAAGGTTTATACCT1- C241T C1059T C3037T C5284T C14408T A23403G G25563T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_535735
 2020-03-12 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00215711/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G C25433T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535736
 2020-03-12 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00215713/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C11916T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535737
 2020-03-12 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00215798/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535738
 2020-03-12 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00215812/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T AAGTCATTT686- C2295T C3037T C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535739
 2020-03-12 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00215817/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C14408T C14786T C20078A G20578T A23403G A23572G C23575T G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535740
 2020-03-12 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00215858/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C1616T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535741
 2020-03-12 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00215879/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G G24197T G25563T C26735T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535742
 2020-03-12 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00215977/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535743
 2020-03-12 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00215981/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535744
 2020-03-12 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00216190/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8208T G9267A T9667C C14408T A23403G G25947T G28361A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535745
 2020-03-12 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00216197/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T A2831C C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535749
 2020-03-12 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00216478/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535751
 2020-03-12 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00216532/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C11514T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535764
 2020-03-12 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00217559/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8208T G9267A T9667C C14408T A23403G G25947T G28361A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536440
 2020-03-12 2020-09-16
 Singapore hCoV-19/Singapore/899/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C6312A G11083T C13730T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_537577
 2020-03-12 2020-09-16
 United States hCoV-19/USA/CA-UCLA-48/2020
 A1- C241T C3037T C14408T A23403G GGG28881AAC GTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29828-

EPI_ISL_537584
 2020-03-12 2020-09-16
 United States hCoV-19/USA/CA-UCLA-59/2020
 ATTAAAGGTTTATACC1- C241T AAGTCATTT686- C2416T C3037T C14408T A23403G G25563T G27915A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_537602
 2020-03-12 2020-09-16
 United States hCoV-19/USA/CA-UCLA-81/2020
 ATTAAAGGTTTATAC1- G1397A G11083T T28688C G28851T G29742T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_537836
 2020-03-12 2020-09-16
 Spain hCoV-19/Spain/RI-CSIC-98002316/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T T13006C C14408T A23403G G25563T C25688T C29870A

EPI_ISL_537837
 2020-03-12 2020-09-16
 Spain hCoV-19/Spain/RI-CSIC-98002317/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A20268G A23403G G29734C C29870A

EPI_ISL_538842
 2020-03-12 2020-09-17
 United Kingdom hCoV-19/England/LEED-2AA14F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T C28313Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538933
 2020-03-12 2020-09-17
 United Kingdom hCoV-19/England/LEED-2AA130/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C23575T G23587C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539144
 2020-03-12 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8CD7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G24077T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539499
 2020-03-12 2020-09-18
 Spain hCoV-19/Spain/AN-ISCIII-202657/2020
 C241T AC538TA G4444T AA4452TG CA4456TT A4892G G5286A A5511T T5514G C8782T T9320A T9477A G10565A C12876T C14805T T24141C G24164A T24371A T25735A G25979T A25985G A26030G A26583G A26662C T26731C C27641T T28144C C28657T C28863T

EPI_ISL_539520
 2020-03-12 2020-09-18
 Spain hCoV-19/Spain/CE-ISCIII-202293/2020
 C1342T A1830G G11083T C14805T TGT22643ACA T22655C TCT22658CTG G26144T

EPI_ISL_540434 MW021514
 2020-03-12 2020-09-21
 United States SARS-CoV-2/human/USA/TN-CDC-7936/2020
 C241T C1059T C3037T C14408T T18513A A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_541370
 2020-03-12 2020-09-22
 Brazil hCoV-19/Brazil/SC-770/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T A5706G C14408T A23403G T27299C GGG28881AAC T29148C GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_541375
 2020-03-12 2020-09-22
 Brazil hCoV-19/Brazil/SE-6535/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C3037T C14408T A20268G A23403G A25018T GAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29781-

EPI_ISL_547453
 2020-03-12 2020-09-24
 Netherlands hCoV-19/Curacao/CW-RIVM-10100/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C T1606C C16762T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547462
 2020-03-12 2020-09-24
 Netherlands hCoV-19/Netherlands/GE-RIVM-10098/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C T1606C A6350C C17410T G28028T A29735G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568918
 2020-03-12 2020-10-02
 France hCoV-19/France/IHU-0659/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C4002T C6861T G10097A C13536T A14240G C14408T A23403G C23731T C28391T GGG28881AAC G29692T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569251
 2020-03-12 2020-10-02
 France hCoV-19/France/IHU-0022/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1059T C3037T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569326
 2020-03-12 2020-10-02
 France hCoV-19/France/IHU-0130/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1059T C3037T G11083T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

MT452574
 2020-03-12 2020-05-10
 United States SAR-CoV-2/human/USA/NY-QDX-00000001/2020
 ATTAA1- C241T C1059T C3037T C14408T A23403G G25563T

MT459855
 2020-03-12 2020-05-11
 Greece SARS-CoV-2/human/GRC/139_32716/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

MT459857
 2020-03-12 2020-05-11
 Greece SARS-CoV-2/human/GRC/141_32983/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T C16073T A23403G GGG28881AAC C28887T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

MT459865
 2020-03-12 2020-05-11
 Greece SARS-CoV-2/human/GRC/150_32764/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C2508T G9190T G11083T C14805T G15919T T17247C G26144T G26172A ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

MT670015
 2020-03-12 2020-06-25
 Chile SARS-CoV-2/human/CHL/2020-25343/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT810479
 2020-03-12 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1380-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- T833C C1059T C3037T C14408T A23403G G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810481
 2020-03-12 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1382-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A23403G CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810565
 2020-03-12 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0436-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- G7798T C8782T C17747T A17858G C18060T C20148T T28144C CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811175
 2020-03-12 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0118-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C884T G1397A G8653T G11083T C20628T A25980C T28688C CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT827816
 2020-03-12 2020-08-02
 United States SARS-CoV-2/human/USA/UNKNOWN-UW-667/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACG1- C8782T C17747T A17858G C18060T T23010C T28144C

MT827820
 2020-03-12 2020-08-02
 United States SARS-CoV-2/human/USA/UNKNOWN-UW-686/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C2061T C8782T C10641T C17747T A17858G C18060T T23010C T28144C

MT827822
 2020-03-12 2020-08-02
 United States SARS-CoV-2/human/USA/UNKNOWN-UW-672/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C2061T C8782T C17747T A17858G C18060T T23010C T28144C

MT827825
 2020-03-12 2020-08-02
 United States SARS-CoV-2/human/USA/UNKNOWN-UW-666/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- TCAC95ATGA C8782T C17747T A17858G C18060T T23010C G25471T T28144C

MT827836
 2020-03-12 2020-08-02
 United States SARS-CoV-2/human/USA/UNKNOWN-UW-659/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCT1- C241T C1059T C3037T C14408T A23403G G25563T

MT827839
 2020-03-12 2020-08-02
 United States SARS-CoV-2/human/USA/UNKNOWN-UW-629/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAG1- C2061T C8782T C17747T A17858G C18060T G21305A T23010C T28144C TG29867AA

NMDC60013261
 2020-03-12 2020-06-01
 China hCoV-19/Guangzhou/ID006/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6312A G11083T C13730T C23929T C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_415486 LR878100
 2020-03-13 2020-03-17
 Netherlands hCoV-19/Netherlands/NA_29/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- G11083T T13078C G14653T C14805T T17247C G26144T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415487 LR878094
 2020-03-13 2020-03-17
 Netherlands hCoV-19/Netherlands/NA_30/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C1059T C3037T C14408T A23403G T25414C G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415488 LR878108
 2020-03-13 2020-03-17
 Netherlands hCoV-19/Netherlands/NA_31/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T C14408T A23403G A24862G G27870T G29477T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415489 LR878099
 2020-03-13 2020-03-17
 Netherlands hCoV-19/Netherlands/NA_32/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- T514C ATG1605- GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415539
 2020-03-13 2020-03-17
 United States hCoV-19/USA/UT-01/2020
 G11083T C18060T C26326T

EPI_ISL_415541
 2020-03-13 2020-03-17
 United States hCoV-19/USA/UT-03/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_415542
 2020-03-13 2020-03-17
 United States hCoV-19/USA/UT-04/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_415543
 2020-03-13 2020-03-17
 United States hCoV-19/USA/UT-05/2020
 C241T C379A C1059T C3037T C14408T A23403G G25563T

EPI_ISL_415544
 2020-03-13 2020-03-17
 United States hCoV-19/USA/UT-06/2020
 C241T C379A C1059T C3037T C14408T A23403G G25563T

EPI_ISL_416482
 2020-03-13 2020-03-22
 Georgia hCoV-19/Georgia/Tb/2020
 ATT1- C241T C3037T C14408T A23403G G24077T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_416690 MT252728
 2020-03-13 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW152/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C8782T C17747T A17858G C18060T T28144C AAA29901-

EPI_ISL_416691 MT252729
 2020-03-13 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW153/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C936T C1059T C3037T C14408T A23403G G25563T G29553A AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_416694 MT252727
 2020-03-13 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW156/2020
 ATTAAAG1- C8782T AGG13512TTA C17747T A17858G C18060T G20128A T27384C T28144C C29518T AAAA29900R

EPI_ISL_416696 MT252731
 2020-03-13 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW158/2020
 ATTAAAGGTTTA1- C2676T C8782T A22606T T28144C G28878A G29742A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416697 MT252732
 2020-03-13 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW159/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAA1- C241T C3037T C14408T A23403G GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862A

EPI_ISL_416698 MT252733
 2020-03-13 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW160/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAA1- C241T C1059T C3037T C14408T A23403G G25563T G29553A -29904ANANAAANANG

EPI_ISL_416699 MT252722
 2020-03-13 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW161/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATC1- C241T C1059T C3037T C14408T A23403G G25563T G29553A TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_416700 MT252723
 2020-03-13 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW162/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C2469T C8782T C17747T A17858G C18060T C18877T T28144C TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_416701 MT252721
 2020-03-13 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW163/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCAC1- TT6963AC C6968A C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAA29892-

EPI_ISL_416703 MT252724
 2020-03-13 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW165/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C8782T C17747T A17858G C18060T G20991A T28144C TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_416705 MT252699
 2020-03-13 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW167/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAA1- C8782T C17747T A17858G C18060T T28144C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_416706 MT252700
 2020-03-13 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW168/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAA1- C6312A G11083T C13730T C23929T C28311T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_416709 MT252707
 2020-03-13 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW171/2020
 ATTAAAGGTTTATAC1- C8782T C17747T A17858G C18060T G21255C G25273C T28144C A29866C GA29868BT AAA29901-

EPI_ISL_416710 MT252708
 2020-03-13 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW172/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAA1- C1238T C3593T C4683T T4779C C8782T C17747T A17858G C18060T A27200G T28144C T28924C AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_416716 MT252697
 2020-03-13 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW178/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_416720
 2020-03-13 2020-03-23
 United States hCoV-19/USA/WA-UW182/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCA1- -8652TGTTTAAACATACTGACTTTTCAAGTGAAATCATAGGATACAAGGCTATTGATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN C8782T T10763C -13066ATCTTTCTGTGCTTTTGCTGTAGATGCTGCTAAAGCTTACAAAGATTATCTAGCTAGTGGTGGACAACCAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN G13126T C17747T A17858G C18060T T27384C T28144C A29865C G29868C -29904ANANANANANAG

EPI_ISL_416721 MT252698
 2020-03-13 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW183/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_416724 MT252705
 2020-03-13 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW186/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAA1- C241T C1059T C3037T C14408T A23403G G25563T G29553A AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_416725 MT252706
 2020-03-13 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW187/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTG1- C241T C1059T C3037T C14408T A23403G G25563T G29553A AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_416726 MT252702
 2020-03-13 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW188/2020
 T2- GG7AA A460G A7079G C8782T C17747T A17858G C18060T T28144C -29904GAVNNAAAA

EPI_ISL_416727 MT252703
 2020-03-13 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW189/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAA1- C8782T T11320C C17747T A17858G C18060T T28144C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_416728 MT252704
 2020-03-13 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW190/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C8782T C17747T A17858G C18060T T28144C A29700G AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_416729 MT252696
 2020-03-13 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW191/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_417016
 2020-03-13 2020-03-23
 Belgium hCoV-19/Belgium/ULG-6503/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4255T C14408T A23403G A26530G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417315
 2020-03-13 2020-03-25
 United Kingdom hCoV-19/England/20118044606/2020
 A2480G C2558T A6474G A9634T G11083T C14805T G26144T

EPI_ISL_417330 MT419851
 2020-03-13 2020-03-25
 United States SARS-CoV-2/human/USA/CA-CDPH-UC26/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_417341 MT246449
 2020-03-13 2020-03-25
 United States SARS-CoV-2/human/USA/WA-UW192/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAA1- C241T C1059T C3037T C14408T A23403G G25563T G29553A A29903-

EPI_ISL_417342 MT246450
 2020-03-13 2020-03-25
 United States SARS-CoV-2/human/USA/WA-UW193/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C1059T C3037T C14408T A23403G G25563T G29553A

EPI_ISL_417343 MT246451
 2020-03-13 2020-03-25
 United States SARS-CoV-2/human/USA/WA-UW194/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C3037T C14408T G16075T T18689A C20031A A23403G C27046T GGG28881AAC -29904AAANANAAA

EPI_ISL_417344 MT246452
 2020-03-13 2020-03-25
 United States SARS-CoV-2/human/USA/WA-UW195/2020
 ATTAAAG1- C8782T C17747T A17858G C18060T A27525G T28144C AAAAAAAA29896-

EPI_ISL_417345 MT246453
 2020-03-13 2020-03-25
 United States SARS-CoV-2/human/USA/WA-UW196/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAA1- C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T AAAAAA29898-

EPI_ISL_417353 MT246461
 2020-03-13 2020-03-25
 United States SARS-CoV-2/human/USA/WA-UW204/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAAC19- C37T C8782T C17747T A17858G C18060T C21575T G22988A T28144C -29904TANATA

EPI_ISL_417354 MT246462
 2020-03-13 2020-03-25
 United States SARS-CoV-2/human/USA/WA-UW205/2020
 T2H G8768A C8782T C17747T A17858G C18060T A27525G T28144C

EPI_ISL_417356 MT246464
 2020-03-13 2020-03-25
 United States SARS-CoV-2/human/USA/WA-UW207/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCT1- C8782T C17747T A17858G C18060T C27276T T27384C T28144C CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_417358 MT246466
 2020-03-13 2020-03-25
 United States SARS-CoV-2/human/USA/WA-UW209/2020
 ATTAAA1- AACC34HTTH C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417362 MT246470
 2020-03-13 2020-03-25
 United States SARS-CoV-2/human/USA/WA-UW213/2020
 ATTAAAGGTTTATACCTT1- AACC34HTTH C241T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_417367 MT246475
 2020-03-13 2020-03-25
 United States SARS-CoV-2/human/USA/WA-UW218/2020
 ATTAAAGGTTTATACCTTCC1- C8782T C9180T G11083T C16887T C17747T A17858G C18060T T28144C C29774T AAAAAA29898-

EPI_ISL_417368 MT246476
 2020-03-13 2020-03-25
 United States SARS-CoV-2/human/USA/WA-UW219/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C5052T C8782T C17474T C17747T A17858G C18060T G27226T T28144C A29903-

EPI_ISL_417371 MT246479
 2020-03-13 2020-03-25
 United States SARS-CoV-2/human/USA/WA-UW222/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAA1- T221C C8782T C17747T A17858G C18060T T28144C G29862A A29903-

EPI_ISL_417372 MT246480
 2020-03-13 2020-03-25
 United States SARS-CoV-2/human/USA/WA-UW223/2020
 A1- C241T C3037T C14408T C18877T A23403G G25563T -29904AA

EPI_ISL_417373 MT246481
 2020-03-13 2020-03-25
 United States SARS-CoV-2/human/USA/WA-UW224/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- AACC34HTTH C241T C1059T C3037T C14408T A23403G G25563T -29904AA

EPI_ISL_417401
 2020-03-13 2020-03-25
 Australia hCoV-19/Australia/NSW45/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C6312A G11083T C13730T C23929T C28311T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_417402
 2020-03-13 2020-03-25
 Australia hCoV-19/Australia/NSW47/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A20268G A23403G G25483A CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_417456 MT251980
 2020-03-13 2020-03-26
 United States SARS-CoV-2/human/USA/WA-UW242/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCT1- C140T G4642A TAG4879- C8782T C12213T C17747T A17858G C18060T C27807T T28144C G29862D AAAA29900-

EPI_ISL_417463 MT582482
 2020-03-13 2020-03-26
 Germany SARS-CoV-2/human/DEU/NRW-18/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_417473 MT911542
 2020-03-13 2020-03-26
 United States SARS-CoV-2/human/USA/MN36-MDH36/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21191M A23403G A25876R CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_417478 MT911546
 2020-03-13 2020-03-26
 United States SARS-CoV-2/human/USA/MN42-MDH42/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G C9223Y C14805T T17247Y G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417492 MT911549
 2020-03-13 2020-03-26
 United States SARS-CoV-2/human/USA/MN45-MDH45/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C6078Y G13489R C14408T A23403G G25563T CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

EPI_ISL_417493 MT911550
 2020-03-13 2020-03-26
 United States SARS-CoV-2/human/USA/MN46-MDH46/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13019T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417494 MT911551
 2020-03-13 2020-03-26
 United States SARS-CoV-2/human/USA/MN47-MDH47/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A23403G -29820T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417495 MT911552
 2020-03-13 2020-03-26
 United States SARS-CoV-2/human/USA/MN48-MDH48/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839T

EPI_ISL_417496 MT911553
 2020-03-13 2020-03-26
 United States SARS-CoV-2/human/USA/MN51-MDH51/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21191M A23403G A25876R -29716A CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_417497 MT911554
 2020-03-13 2020-03-26
 United States SARS-CoV-2/human/USA/MN52-MDH52/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3738Y C14408T A23403G G25563T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417498
 2020-03-13 2020-03-26
 United States hCoV-19/USA/MN53-MDH53/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T A4912C C14805T C17010A G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417499 MT911555
 2020-03-13 2020-03-26
 United States SARS-CoV-2/human/USA/MN55-MDH55/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C11916T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417514
 2020-03-13 2020-03-27
 United States hCoV-19/USA/WI-UW-22/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T G16381A T17877C C20316T G25500T T28144C G28878A G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417522 MT374105
 2020-03-13 2020-03-27
 Taiwan SARS-CoV-2/human/TWN/CGMH-CGU-09/2020
 AT1- G11083T C14805T T17247C G26144T A29903-

EPI_ISL_417523 MT374106
 2020-03-13 2020-03-27
 Taiwan SARS-CoV-2/human/TWN/CGMH-CGU-10/2020
 AT1- C228T G1397A G9479T A9514G G11083T A19818G G26720C G28202T T28688C T28835C G29742T AA29902-

EPI_ISL_417694
 2020-03-13 2020-03-27
 Iceland hCoV-19/Iceland/3/2020
 C241T C3037T C14408T G18214T A23403G A26530G

EPI_ISL_417711
 2020-03-13 2020-03-27
 Iceland hCoV-19/Iceland/150/2020
 A187G C241T C3037T C14408T C16017T T16515C A23403G

EPI_ISL_417739
 2020-03-13 2020-03-27
 Iceland hCoV-19/Iceland/5/2020
 C241T C3037T A10323G C14408T A20268G A23403G

EPI_ISL_417741
 2020-03-13 2020-03-27
 Iceland hCoV-19/Iceland/145/2020
 C241T C3037T A10323G C14408T A20268G A23403G

EPI_ISL_417744
 2020-03-13 2020-03-27
 Iceland hCoV-19/Iceland/137/2020
 C241T C799T C14408T A20268G A23403G

EPI_ISL_417745
 2020-03-13 2020-03-27
 Iceland hCoV-19/Iceland/152/2020
 C241T C3037T A10323G C14408T A20268G A23403G

EPI_ISL_417755
 2020-03-13 2020-03-27
 Iceland hCoV-19/Iceland/169/2020
 C241T A1331G C3037T A10323G C14408T A20268G A23403G

EPI_ISL_417759
 2020-03-13 2020-03-27
 Iceland hCoV-19/Iceland/166/2020
 G1440A G2891A C7011T G25593C

EPI_ISL_417793
 2020-03-13 2020-03-27
 Iceland hCoV-19/Iceland/142/2020
 G1440A G2891A C27661T

EPI_ISL_417795
 2020-03-13 2020-03-27
 Iceland hCoV-19/Iceland/144/2020
 C241T C3037T C14408T A23403G C24054T A25958G C27046T GGG28881AAC

EPI_ISL_417796
 2020-03-13 2020-03-27
 Iceland hCoV-19/Iceland/146/2020
 C241T C3037T C14408T G16864A A23403G GGG28881AAC

EPI_ISL_417797
 2020-03-13 2020-03-27
 Iceland hCoV-19/Iceland/147/2020
 C186T C241T AAGTCATTT686- C1059T C3037T G11552T C14408T A23403G T24907C G25563T

EPI_ISL_417798
 2020-03-13 2020-03-27
 Iceland hCoV-19/Iceland/148/2020
 C241T C799T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_417799
 2020-03-13 2020-03-27
 Iceland hCoV-19/Iceland/149/2020
 C151T C241T C3037T C14408T A23403G A26530G

EPI_ISL_417801
 2020-03-13 2020-03-27
 Iceland hCoV-19/Iceland/151/2020
 T3034C G11083T C14805T C16054T T17247C T17859C G26144T G29751C

EPI_ISL_417802
 2020-03-13 2020-03-27
 Iceland hCoV-19/Iceland/153/2020
 C241T C3037T C14408T A23403G C24054T A25958G C27046T GGG28881AAC

EPI_ISL_417803
 2020-03-13 2020-03-27
 Iceland hCoV-19/Iceland/156/2020
 A187G C241T C3037T C14408T C15857T A23403G

EPI_ISL_417804
 2020-03-13 2020-03-27
 Iceland hCoV-19/Iceland/157/2020
 C241T T658C C3037T C14408T A23403G A24862G C28629T

EPI_ISL_417805
 2020-03-13 2020-03-27
 Iceland hCoV-19/Iceland/158/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_417806
 2020-03-13 2020-03-27
 Iceland hCoV-19/Iceland/159/2020
 C241T C1059T C3037T T13006C C14408T A23403G G25563T C25688T

EPI_ISL_417810
 2020-03-13 2020-03-27
 Iceland hCoV-19/Iceland/168/2020
 C28T C241T C3037T A8203G A10323G C14408T A20268G A23403G G24193T

EPI_ISL_417854
 2020-03-13 2020-03-27
 Iceland hCoV-19/Iceland/6/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_417964 MT334533
 2020-03-13 2020-03-27
 United States SARS-CoV-2/human/USA/UT-00014/2020
 AT1-C C8782T C17747T A17858G C18060T T28144C G28727T

EPI_ISL_418006
 2020-03-13 2020-03-28
 Portugal hCoV-19/Portugal/PT0021/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T C18877T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_418007
 2020-03-13 2020-03-28
 Portugal hCoV-19/Portugal/PT0022/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G G25273T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_418008
 2020-03-13 2020-03-28
 Portugal hCoV-19/Portugal/PT0023/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T G4444T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_418028 MT259235
 2020-03-13 2020-03-28
 United States SARS-CoV-2/human/USA/WA-UW243/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACT1- C241T C1059T C3037T A13748G C14408T A23403G G25563T C27964T AAAA29900-

EPI_ISL_418036 MT259243
 2020-03-13 2020-03-28
 United States SARS-CoV-2/human/USA/WA-UW251/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCA1- C241T C1059T C3037T C10319T C14408T A23403G G25563T C27964T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_418039 MT259246
 2020-03-13 2020-03-28
 United States SARS-CoV-2/human/USA/WA-UW254/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- A35W T150C T153G C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_418042 MT259249
 2020-03-13 2020-03-28
 United States SARS-CoV-2/human/USA/WA-UW257/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAA1- C241T C1059T C1191T C3037T C14408T G21724C A23403G G25563T C27964T

EPI_ISL_418049 MT259256
 2020-03-13 2020-03-28
 United States SARS-CoV-2/human/USA/WA-UW264/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C241T C1059T C3037T C14408T A23403G G25563T C27964T C28099T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_418051 MT259258
 2020-03-13 2020-03-28
 United States SARS-CoV-2/human/USA/MN-UW266/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAA1- C1059T C3037T C14408T A23403G G25563T C27964T C28099T T29867A -29904AAAAAAAAAAAAA

EPI_ISL_418056 MT259263
 2020-03-13 2020-03-28
 United States SARS-CoV-2/human/USA/WA-UW271/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C241T C3037T C14408T A23403G GGG28881AAC -29904VAARAA

EPI_ISL_418057 MT259264
 2020-03-13 2020-03-28
 United States SARS-CoV-2/human/USA/WA-UW272/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C241T C1059T C3037T C14408T A23403G G25563T GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_418059 MT259266
 2020-03-13 2020-03-28
 United States SARS-CoV-2/human/USA/WA-UW274/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C8782T C17747T A17858G C18060T T28144C AA29902-

EPI_ISL_418061 MT259268
 2020-03-13 2020-03-28
 United States SARS-CoV-2/human/USA/WA-UW276/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACT1- C8782T C17747T A17858G C18060T T28144C A29869T -29904AAA

EPI_ISL_418110
 2020-03-13 2020-03-28
 United Kingdom hCoV-19/Wales/PHWC-23D6A/2020
 ATTA1- G1440A G2891A G28851T

EPI_ISL_418216
 2020-03-13 2020-03-29
 Senegal hCoV-19/Senegal/136/2020
 C8782T T9477A C14805T A22151G G25979T T28144C C28657T C28863T

EPI_ISL_418230
 2020-03-13 2020-03-29
 France hCoV-19/France/IDF2420/2020
 ATTAAAGGTTTATACCTTC1- C241T C3037T C14408T C15324T A23403G AGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29799-

EPI_ISL_418364
 2020-03-13 2020-03-13
 Canada hCoV-19/Canada/ON_PHL6922/2020
 A1- C241T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418377
 2020-03-13 2020-03-13
 Canada hCoV-19/Canada/ON_PHL1898/2020
 A1- C190G C241T C3037T C14408T A23403G G25563T GTTCTA28090- AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418379
 2020-03-13 2020-03-13
 Canada hCoV-19/Canada/ON_PHL7512/2020
 A1- C854T TGT1576- ATG1605- G3287T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418380
 2020-03-13 2020
 Canada hCoV-19/Canada/ON_PHL3476/2020
 A1- T184- T8767C C8782T T10771C C17747T A17858G C18060T A25031T G25166A T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418386
 2020-03-13 2020-03-13
 Finland hCoV-19/Finland/13M26/2020
 C241T C1059T C3037T C14408T A23403G G25563T GTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29810-

EPI_ISL_418390
 2020-03-13 2020-03-13
 Finland hCoV-19/Finland/13M33/2020
 C241T C2416T C3037T A10874G C14408T G19559T A23403G G23611A G25563T GTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29810-

EPI_ISL_418391
 2020-03-13 2020-03-13
 Finland hCoV-19/Finland/13M57/2020
 C241T C3037T C14408T A20268G A23403G C28854T AAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29813-

EPI_ISL_418392
 2020-03-13 2020-03-13
 Finland hCoV-19/Finland/13M58/2020
 C241T C3037T C14408T C18877T A23403G G24197T G25563T C26735T AAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29813-

EPI_ISL_418395
 2020-03-13 2020-03-13
 Finland hCoV-19/Finland/13M65/2020
 C241T C3037T C14408T C18877T A23403G G24197T G25563T C26735T GTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29810-

EPI_ISL_418671
 2020-03-13 2020-03-30
 United Kingdom hCoV-19/England/20119026102/2020
 C241T C3037T C14408T G14580T A23403G

EPI_ISL_418734
 2020-03-13 2020-03-30
 United Kingdom hCoV-19/England/20124097102/2020
 G11083T C14805T C15480T C23707T A25056G G26144T

EPI_ISL_418771 MT262896
 2020-03-13 2020-03-30
 United States SARS-CoV-2/human/USA/WA-NH2/2020
 C8782T T11320C C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418772 MT262897
 2020-03-13 2020-03-30
 United States SARS-CoV-2/human/USA/WA-NH3/2020
 C8782T T11320C C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418773 MT262898
 2020-03-13 2020-03-30
 United States SARS-CoV-2/human/USA/WA-NH4/2020
 C8782T T11320C C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418774 MT262899
 2020-03-13 2020-03-30
 United States SARS-CoV-2/human/USA/WA-NH5/2020
 C8782T T13845C C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418775 MT262900
 2020-03-13 2020-03-30
 United States SARS-CoV-2/human/USA/WA-NH6/2020
 C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418776 MT262901
 2020-03-13 2020-03-30
 United States SARS-CoV-2/human/USA/WA-NH7/2020
 C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418777 MT262902
 2020-03-13 2020-03-30
 United States SARS-CoV-2/human/USA/WA-NH8/2020
 C8782T T11320C C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418778 MT262903
 2020-03-13 2020-03-30
 United States SARS-CoV-2/human/USA/WA-NH9/2020
 C8782T T11320C C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418779 MT262904
 2020-03-13 2020-03-30
 United States SARS-CoV-2/human/USA/WA-NH10/2020
 C8782T T11320C C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418780 MT262905
 2020-03-13 2020-03-30
 United States SARS-CoV-2/human/USA/WA-NH11/2020
 C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418781 MT262906
 2020-03-13 2020-03-30
 United States SARS-CoV-2/human/USA/WA-NH12/2020
 C8782T T11320C C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418782 MT262915
 2020-03-13 2020-03-30
 United States SARS-CoV-2/human/USA/WA-NH13/2020
 C8782T C17747T A17858G C18060T G23120T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418783 MT262907
 2020-03-13 2020-03-30
 United States SARS-CoV-2/human/USA/WA-NH14/2020
 C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418784 MT262908
 2020-03-13 2020-03-30
 United States SARS-CoV-2/human/USA/WA-NH17/2020
 C8782T T11320C C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418785 MT262909
 2020-03-13 2020-03-30
 United States SARS-CoV-2/human/USA/WA-NH18/2020
 C8782T T11320C C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418786 MT262910
 2020-03-13 2020-03-30
 United States SARS-CoV-2/human/USA/WA-NH19/2020
 C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418787 MT262911
 2020-03-13 2020-03-30
 United States SARS-CoV-2/human/USA/WA-NH20/2020
 C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418788 MT262912
 2020-03-13 2020-03-30
 United States SARS-CoV-2/human/USA/WA-NH21/2020
 C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418789 MT262913
 2020-03-13 2020-03-30
 United States SARS-CoV-2/human/USA/WA-NH22/2020
 C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418790 MT262916
 2020-03-13 2020-03-30
 United States SARS-CoV-2/human/USA/WA-NH23/2020
 C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418791 MT262914
 2020-03-13 2020-03-30
 United States SARS-CoV-2/human/USA/WA-NH24/2020
 C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418813
 2020-03-13 2020-03-31
 Canada hCoV-19/Canada/MB_10/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G19677T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_418814
 2020-03-13 2020-03-31
 Canada hCoV-19/Canada/NS_13/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A6400G C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_418817
 2020-03-13 2020-03-31
 Canada hCoV-19/Canada/BC_0554880/2020
 C7200T C8782T C17747T A17858G C18060T T28144C

EPI_ISL_418849
 2020-03-13 2020-03-31
 Canada hCoV-19/Canada/BC_8486790/2020
 A187G C241T C3037T C14408T A23403G

EPI_ISL_418851
 2020-03-13 2020-03-31
 Canada hCoV-19/Canada/BC_8622445/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_418856
 2020-03-13 2020-03-31
 Canada hCoV-19/Canada/BC_9345042/2020
 A187G C241T C1616T C3037T C14408T A23403G

EPI_ISL_418857
 2020-03-13 2020-03-31
 Canada hCoV-19/Canada/BC_9345715/2020
 A187G C241T C3037T C14408T A23403G

EPI_ISL_418858
 2020-03-13 2020-03-31
 Canada hCoV-19/Canada/BC_9446031/2020
 A2480G C2558T A4912C G11083T C14805T C17010A C21575T G26144T

EPI_ISL_418866 MT263381
 2020-03-13 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW298/2020
 ATTAAAG1- AACC34WTTM C8782T C17747T A17858G C18060T T28144C -29904AAANANAAANADA

EPI_ISL_418867 MT263382
 2020-03-13 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW299/2020
 ATTAAAGGTTTAT1- AACC34TTTA C8782T C17747T A17858G C18060T T28144C A29866T GA29868BT -29904AHATANANA

EPI_ISL_418868 MT263383
 2020-03-13 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW300/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGC1- G219T C8782T C17747T A17858G C18060T T28144C TG29867AA

EPI_ISL_418882 MT263396
 2020-03-13 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW315/2020
 AT1TG A4H C8782T C17747T A17858G C18060T T28144C A29880C

EPI_ISL_418893 MT263406
 2020-03-13 2020-03-30
 United States SARS-CoV-2/human/USA/MN-UW326/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C1059T C3037T C10319T C14408T C15720T A23403G G25563T C27964T GA29868CT -29904AAAAAAAA

EPI_ISL_418901 MT263414
 2020-03-13 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW334/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGA1- C2110T C8782T C17747T A17858G C18060T C21575T T28144C

EPI_ISL_418902 MT263415
 2020-03-13 2020-03-30
 United States SARS-CoV-2/human/USA/MN-UW335/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAA1- C241T C673T C1059T C3037T C4683T C14408T A23403G G25563T C27964T -29878AAACAAAAAAC

EPI_ISL_418915 MT263428
 2020-03-13 2020-03-30
 United States SARS-CoV-2/human/USA/IL-UW348/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACG1- C241T C1059T C3037T C5183T C14408T A23403G G25563T G25691T A29903-

EPI_ISL_418916 MT263429
 2020-03-13 2020-03-30
 United States SARS-CoV-2/human/USA/IL-UW349/2020
 ATTAAAGGTTTAT1- AACC34HTTA G1440A G2891A C28854T A29903-

EPI_ISL_418918 MT263431
 2020-03-13 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW351/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C11916T C14408T A23403G G25563T A29903-

EPI_ISL_418919 MT263432
 2020-03-13 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW352/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATC1- A55C C241T C1059T C3037T C14408T A23403G G25563T -29904AAANAAANAA

EPI_ISL_418920 MT263433
 2020-03-13 2020-03-30
 United States SARS-CoV-2/human/USA/IL-UW353/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- AAC34HTT C241T C2416T C3037T C14408T A23403G G25563T G26233T AAAAAAAAAAAAAAAAAAA29885-

EPI_ISL_419310 LC547532
 2020-03-13 2020-04-02
 Japan hCoV-19/Japan/P5-2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C3037T C14408T A23403G GGG28881AAC TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_419311 LC547533
 2020-03-13 2020-04-02
 Japan hCoV-19/Japan/P5-3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C241T C3037T C14408T A23403G GGG28881AAC G29229A AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_419392 MT911563
 2020-03-13 2020-04-02
 United States SARS-CoV-2/human/USA/MN64-MDH64/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17747T A17858G C18060T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_419582
 2020-03-13 2020-04-02
 Luxembourg hCoV-19/Luxembourg/LNS3156434/2020
 A187G C241T C3037T C14408T A23403G ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_419584
 2020-03-13 2020-04-02
 Luxembourg hCoV-19/Luxembourg/LNS3711853/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_419600
 2020-03-13 2020-04-02
 Luxembourg hCoV-19/Luxembourg/LNS9080444/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_419660
 2020-03-13 2020-04-03
 Austria hCoV-19/Austria/CeMM0007/2020
 C241T C3037T C14408T C18877T A23403G G25563T A28049R TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_419771 MT450974
 2020-03-13 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC59/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C6310A C6312A G11083T C13730T C19524T C23929T C28311T

EPI_ISL_419772 MT450975
 2020-03-13 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC60/2020
 ATTA1- C21T G7007A C8782T G18180A C26088T T28144C C28868A

EPI_ISL_419774 MT450977
 2020-03-13 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC62/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23403G A26530G

EPI_ISL_419780 MT450980
 2020-03-13 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC66/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C1076T G1397A G11083T T28688C G29742T

EPI_ISL_419781 MT450981
 2020-03-13 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC67/2020
 A1- C8782T C17747T A17858G C18060T T28144C T29855C

EPI_ISL_419782 MT450982
 2020-03-13 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC68/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C8782T C17747T A17858G C18060T A24694T G25340A T28144C

EPI_ISL_419783 MT450983
 2020-03-13 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC69/2020
 ATTA1- C8782T C17747T A17858G C18060T A24694T G25340A T28144C

EPI_ISL_419786 MT450984
 2020-03-13 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC70/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G11083T C14805T T17247C G26144T

EPI_ISL_420129
 2020-03-13 2020-04-05
 Spain hCoV-19/Spain/Valencia45/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T C2997T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420532
 2020-03-13 2020-04-06
 Australia hCoV-19/Australia/WA02/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C14408T A23403G C25350T GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_420537
 2020-03-13 2020-04-06
 Australia hCoV-19/Australia/WA07/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- T1368C C6990T G11083T C14805T C20736T C23707T G26144T C27925T GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_420628 MT322412
 2020-03-13 2020-04-08
 United States SARS-CoV-2/human/USA/VA-DCLS-0024/2020
 AT1- C8626T C8782T C17747T A17858G C18060T T28144C GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_421354 MT370915
 2020-03-13 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08125/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T A2018G C3037T C14408T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_421360 MT370881
 2020-03-13 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08138/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A20755C A23403G G25563T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_421415 MT370889
 2020-03-13 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08472/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G A24520G G25563T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_422408
 2020-03-13 2020-04-10
 Taiwan hCoV-19/Taiwan/NTU05/2020
 C241T C1059T A2219G C3037T C14408T C23185T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_422409
 2020-03-13 2020-04-10
 Taiwan hCoV-19/Taiwan/NTU06/2020
 A1515G C9223T G11083T C14805T T17247C G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_422410
 2020-03-13 2020-04-10
 Taiwan hCoV-19/Taiwan/NTU07/2020
 ATG1605- G2036A C3990T A18333T C19011T A23614G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_422430
 2020-03-13 2020-04-10
 Singapore hCoV-19/Singapore/37/2020
 ATTAAA1- C241T G373K C1059T C1093M C3037T C13643Y C14408T A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_422644 LR877940
 2020-03-13 2020-04-11
 Netherlands hCoV-19/Netherlands/Gelderland_8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1397A A6466G C7164T T7672C G11083T C12651T C23191T G26196A C28377T T28688C G29742T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422799 LR878116
 2020-03-13 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_38/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422801 LR878120
 2020-03-13 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_40/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- C17410T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422802 LR878125
 2020-03-13 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_41/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- A2871G C17410T C24919T G27390T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422803 LR878126
 2020-03-13 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_42/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422868 LR878114
 2020-03-13 2020-04-11
 Netherlands hCoV-19/Netherlands/NoordBrabant_72/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- C17410T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422869 LR877736 LR878140
 2020-03-13 2020-04-11
 Netherlands hCoV-19/Netherlands/NoordBrabant_73/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T A12820G C13119T C14805T T17247C G26144T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422905 LR878135
 2020-03-13 2020-04-11
 Netherlands hCoV-19/Netherlands/ZuidHolland_33/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T A12820G C13119T C14805T T17247C G26144T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422961
 2020-03-13 2020-04-12
 United States hCoV-19/USA/IL-UW-1265/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- AACC34HTTH G578A C8782T C17747T A17858G C18060T A24694T C25207T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_425471
 2020-03-13 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10DF32/2020
 ATG1605- C13965T C20270T

EPI_ISL_425650
 2020-03-13 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR103/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C23422T T23849C C29686T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425652
 2020-03-13 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR106/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C22208T A23403G C23422T T23849C C29686T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425653
 2020-03-13 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR107/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C20823T A23403G C23422T T23849C C29686T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425654
 2020-03-13 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR108/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C20823Y A23403G C23422T T23849C C29686T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425670
 2020-03-13 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR128/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C23422T T23849C C29686T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425671
 2020-03-13 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR129/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C23422T T23849C G29227A C29686T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425730
 2020-03-13 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR20/2020
 

EPI_ISL_425739
 2020-03-13 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR21/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC C29253T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425759
 2020-03-13 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR30/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1884T C3037T C14408T A23403G T26497C ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_425760
 2020-03-13 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR31/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C541T C1059T C3037T G11083T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425761
 2020-03-13 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR32/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425764
 2020-03-13 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR35/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C9967Y G11083T C14805T T17247C G26144T G27915R CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425765
 2020-03-13 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR36/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C9246T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425766
 2020-03-13 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR37/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T C5340T G11083T C14805T T22574C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425767
 2020-03-13 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR38/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9565T C14408T C22277A A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425769
 2020-03-13 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR41/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C823T C3037T C3373A C14408T A23403G T26066Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425770
 2020-03-13 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR42/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T C5340T G11083T C14805T T22574C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425772
 2020-03-13 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR44/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G443A A1587G G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425773
 2020-03-13 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR45/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1587G G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425774
 2020-03-13 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR46/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1587G G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425777
 2020-03-13 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR49/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10741T C14408T A23403G C27046T C28344A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425779
 2020-03-13 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR51/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C23575T G23587C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425783
 2020-03-13 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR54/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425791
 2020-03-13 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR63/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G26640T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425817
 2020-03-13 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR97/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G26640T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425827
 2020-03-13 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB021/2020
 C241T C3037T C14408T A23403G

EPI_ISL_425839
 2020-03-13 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB033/2020
 C241T C3037T G10201T C14408T A23403G GGG28881AAC G29540T

EPI_ISL_426515
 2020-03-13 2020-04-17
 United States hCoV-19/USA/AZ-TG268909/2020
 C241T C1059T C3037T C14408T C19862T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_427294
 2020-03-13 2020-04-18
 Brazil hCoV-19/Brazil/DF-615i/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T A23403G T27299C GGG28881AAC T29148C GAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29781-

EPI_ISL_427295
 2020-03-13 2020-04-18
 Brazil hCoV-19/Brazil/DF-619i/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T A23403G T27299C GGG28881AAC T29148C GAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29781-

EPI_ISL_427531
 2020-03-13 2020-04-19
 United States hCoV-19/USA/NY-WCMP4A02N/2020
 C8782T C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871RG

EPI_ISL_427532
 2020-03-13 2020-04-19
 United States hCoV-19/USA/NY-WCMP4B06P/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871RG

EPI_ISL_427533
 2020-03-13 2020-04-19
 United States hCoV-19/USA/NY-WCMP4C01P/2020
 C241T C1059T C3037T C7735T C14408T A20755C A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871RG

EPI_ISL_427534
 2020-03-13 2020-04-19
 United States hCoV-19/USA/NY-WCMP4C02N/2020
 C241T C1059T C3037T C7735T C14408T A20755C A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871RG

EPI_ISL_427535
 2020-03-13 2020-04-19
 United States hCoV-19/USA/NY-WCMP4D01P/2020
 C241T C1059T C3037T C14408T A20755C A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871RG

EPI_ISL_427536
 2020-03-13 2020-04-19
 United States hCoV-19/USA/NY-WCMP4D04P/2020
 C6720T C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871W

EPI_ISL_427537
 2020-03-13 2020-04-19
 United States hCoV-19/USA/NY-WCMP4E05P/2020
 C241T C1059T C3037T C14408T A23403G G25563T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870WCGG

EPI_ISL_427538
 2020-03-13 2020-04-19
 United States hCoV-19/USA/NY-WCMP4G04P/2020
 C241T C1059T C3037T C6145T C14408T C21575Y A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871C

EPI_ISL_427539
 2020-03-13 2020-04-19
 United States hCoV-19/USA/NY-WCMP4H03P/2020
 C241T C1059T C3037T C6573T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_427540
 2020-03-13 2020-04-19
 United States hCoV-19/USA/NY-WCMP5F01P/2020
 C241T C1059T C3037T G12769T C14408T A23403G G25563T G26452T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871RGG

EPI_ISL_427541
 2020-03-13 2020-04-19
 United States hCoV-19/USA/NY-WCMP5G03P/2020
 G11083T C14805T T17247C G26144T C27883T A29871R AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_427542
 2020-03-13 2020-04-19
 United States hCoV-19/USA/NY-WCMP5H02P/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871R

EPI_ISL_427543
 2020-03-13 2020-04-19
 United States hCoV-19/USA/NY-WCMP5H03P/2020
 G11083T C14805T T17247C G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_428724
 2020-03-13 2020-04-21
 United States hCoV-19/USA/WI-UW-250/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428831
 2020-03-13 2020-04-22
 Singapore hCoV-19/Singapore/52/2020
 ATTAAA1- T87Y A1515R C4331T C9223T G11083T C14805T T17247C G26144T C28775T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_428868
 2020-03-13 2020-04-22
 Russia hCoV-19/Russia/StPetersburg-64304/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_428869
 2020-03-13 2020-04-22
 Russia hCoV-19/Russia/Moscow_64405/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_428870
 2020-03-13 2020-04-22
 Russia hCoV-19/Russia/Moscow-64601/2020
 C241T C2933T C3037T G4255T C14408T G14511T G16935T A23403G A26530G

EPI_ISL_428871
 2020-03-13 2020-04-22
 Russia hCoV-19/Russia/Krasnoyarsk-66501/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429164
 2020-03-13 2020-04-23
 Thailand hCoV-19/Thailand/Bangkok-0025/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- A895G C2942T G4390T C8782T C9598T G14212A G20134T G24047A T28144C C28453Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_429165
 2020-03-13 2020-04-23
 Thailand hCoV-19/Thailand/Bangkok-0026/2020
 A1- A895G C2942T G4390T C8782T C9598T G20134T G24047A G27877T T28144C AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_429166
 2020-03-13 2020-04-23
 Thailand hCoV-19/Thailand/Bangkok-0028/2020
 AT1- A895G C2942T G4390T C8782T C9598T G20134T G24047A G27877T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_429167
 2020-03-13 2020-04-23
 Thailand hCoV-19/Thailand/Bangkok-0029/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- A895G C2942T G4390T C8782T C9598T G20134T G24047A T28144C

EPI_ISL_429293
 2020-03-13 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH37/2020
 C241T C1059T C1302T C3037T C9979T C14408T A23403G G25563T G29779T

EPI_ISL_429295
 2020-03-13 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH39/2020
 T514C ATG1605- C17410T

EPI_ISL_429300
 2020-03-13 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH46/2020
 C241T C1059T C3037T T8788C C14408T A23403G G25563T G26951A

EPI_ISL_429669
 2020-03-13 2020-04-24
 Brazil hCoV-19/Brazil/CV6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C3037T C11956T C14408T A23403G G25563T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_430150 MT627619
 2020-03-13 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S296/2020
 C8782T C17747T A17858G C18060T G21255C G26365T T28144C

EPI_ISL_430151 MT627615
 2020-03-13 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S297/2020
 G3955T A8681G C8782T C17747T A17858G C18060T T28144C

EPI_ISL_430162 MT632613
 2020-03-13 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S125/2020
 C8782T T11320C C17747T A17858G C18060T T28144C

EPI_ISL_430163 MT632600
 2020-03-13 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S126/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_430164 MT632602
 2020-03-13 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S127/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_430165 MT632569
 2020-03-13 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S128/2020
 C8782T T13845C C17747T A17858G C18060T T28144C

EPI_ISL_430166 MT632603
 2020-03-13 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S129/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_430167 MT632610
 2020-03-13 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S130/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_430168 MT632552
 2020-03-13 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S131/2020
 C8782T T11320C C17747T A17858G C18060T T28144C

EPI_ISL_430170 MT632623
 2020-03-13 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S133/2020
 C8782T T11320C C17747T A17858G C18060T T28144C

EPI_ISL_430172 MT632580
 2020-03-13 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S135/2020
 C8782T T11320C C17747T A17858G C18060T T28144C

EPI_ISL_430173 MT632555
 2020-03-13 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S136/2020
 C8782T T11320C C17747T A17858G C18060T T28144C

EPI_ISL_430174 MT632582
 2020-03-13 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S137/2020
 C8782T C17747T A17858G C18060T G23120T T28144C

EPI_ISL_430178 MT632618
 2020-03-13 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S141/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_430179 MT632608
 2020-03-13 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S142/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_430185 MT632541
 2020-03-13 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S148/2020
 C241T C1059T C3037T C14408T A23403G G25563T G29553A

EPI_ISL_430881 MT412233
 2020-03-13 2020-04-28
 United States SARS-CoV-2/human/USA/UNKNOWN-UW-531/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- AACC34TTTA C8782T C17747T A17858G C18060T G21255C T28144C ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_430888 MT412235
 2020-03-13 2020-04-28
 United States SARS-CoV-2/human/USA/WA-UW-558/2020
 ATTAAAGGTTTATACCTTCCCAGG1- A31T AAC34TTT C8782T C17747T A17858G C18060T A27397G T28144C

EPI_ISL_430895 MT412234
 2020-03-13 2020-04-28
 United States SARS-CoV-2/human/USA/WA-UW-604/2020
 ATTAAAGGTTTAT1- CCCAGGTAACAAACCAA19- C36T C8782T C9866T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_431118
 2020-03-13 2020-04-29
 China hCoV-19/Fujian/IM3520001T/2020
 ATTAAAGGTTTATACCTTC1- A26- C28T C241T C1059T C3037T C14408T A23403G G25563T G26589T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_434486
 2020-03-13 2020-04-29
 Greece hCoV-19/Greece/151/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGG28881AAC TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_434645
 2020-03-13 2020-04-30
 Sweden hCoV-19/Sweden/20-05627/2020
 C241T C3037T C14408T A23403G

EPI_ISL_434684
 2020-03-13 2020-05-01
 United States hCoV-19/USA/MD-HP00023/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_434699
 2020-03-13 2020-05-01
 Thailand hCoV-19/Thailand/NIH-2296/2020
 ATTAAAGGTTTAT1- A895G C2942T G4390T C8782T C9598T G20134T G24047A G27877T T28144C C29854Y C29857Y AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_434726
 2020-03-13 2020-05-01
 United States hCoV-19/USA/TX-HMH016/2020
 C241T C1059T C3037T C14408T A23403G G24794T G25563T C27964T

EPI_ISL_434727
 2020-03-13 2020-05-01
 United States hCoV-19/USA/TX-HMH017/2020
 C241T C1059T C3037T C14408T A23403G G24794T G25563T C27964T

EPI_ISL_435063
 2020-03-13 2020-05-02
 India hCoV-19/India/NCDC-01326/2020
 C241T C1059T C3037T T8022K A8026W C10449Y C14408T A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_435313
 2020-03-13 2020-05-04
 Vietnam hCoV-19/Vietnam/VNHN_0762/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C313T C3037T C14408T A23403G T25652G TT27792- GGG28881AAC A29122C GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_435314
 2020-03-13 2020-05-04
 Vietnam hCoV-19/Vietnam/VNHN_0764/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T C1059T C3037T C14184T C14408T C15720T A23403G G25563T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_435649
 2020-03-13 2020-05-05
 United States hCoV-19/USA/CA-SCCPHD-UC170/2020
 G26951T C27874T

EPI_ISL_435654
 2020-03-13 2020-05-05
 United States hCoV-19/USA/CA-SCCPHD-UC175/2020
 G26951T C27874T

EPI_ISL_435720
 2020-03-13 2020-05-05
 United States hCoV-19/USA/CT-Yale-151/2020
 C241T C1059T G1149A C3037T C14408T A20755C A23403G G25563T

EPI_ISL_436070 MT434802
 2020-03-13 2020-05-05
 United States SARS-CoV-2/human/USA/NY-CDC-SURV0495NYC/2020
 C241T C1059T T5698C C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_436212
 2020-03-13 2020-05-06
 Spain hCoV-19/Spain/Valencia117/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C2358T C3037T C5348T C14408T A23403G C25207T G25563T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_436213
 2020-03-13 2020-05-06
 Spain hCoV-19/Spain/Valencia118/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C8782T T9477A C14805T C20582T G25979T T28144C C28657T C28863T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_436214
 2020-03-13 2020-05-06
 Spain hCoV-19/Spain/Valencia119/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_436290
 2020-03-13 2020-05-06
 Spain hCoV-19/Spain/Valencia195/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C14408T T17126C A20268G A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_436292
 2020-03-13 2020-05-06
 Spain hCoV-19/Spain/Valencia197/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C14408T A20268G A23403G G29734C AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_436812 MT439244
 2020-03-13 2020-05-06
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20136/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C14408T A23403G G25563T C26060T TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_436814 MT439245
 2020-03-13 2020-05-06
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20158/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_437967
 2020-03-13 2020-05-12
 Austria hCoV-19/Austria/CeMM0108/2020
 C7011Y G11083T C14805Y C18086Y T22521K G26144K G28842K TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_437975
 2020-03-13 2020-05-12
 Austria hCoV-19/Austria/CeMM0117/2020
 C241T C1059T C3037T C14408T G15380T T22521K A23403G G25563T C27654Y TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_437985
 2020-03-13 2020-05-12
 Austria hCoV-19/Austria/CeMM0132/2020
 C241T C1059T C3037T C14408T T22521K A23403G G25563T A27023G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_437986
 2020-03-13 2020-05-12
 Austria hCoV-19/Austria/CeMM0133/2020
 C241T C1059T C3037T C14408T G15380T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_437987
 2020-03-13 2020-05-12
 Austria hCoV-19/Austria/CeMM0134/2020
 C241T A761G C1059T C3037T A6825C C14408T T22521K A23403G G25563T GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_437988
 2020-03-13 2020-05-12
 Austria hCoV-19/Austria/CeMM0135/2020
 C241T C1059T C3037T C14408T A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_437989
 2020-03-13 2020-05-12
 Austria hCoV-19/Austria/CeMM0136/2020
 C241T C1059T C3037T C14408T A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_437990
 2020-03-13 2020-05-12
 Austria hCoV-19/Austria/CeMM0137/2020
 C241T C3037T C3373A C14408T T22521K A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_437991
 2020-03-13 2020-05-12
 Austria hCoV-19/Austria/CeMM0139/2020
 C241T C1059T C3037T C14408T G15380T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_437992
 2020-03-13 2020-05-12
 Austria hCoV-19/Austria/CeMM0140/2020
 C241T C1059Y C3037T C3373M C14408T G15380K A23403G G25563K GGG28881RRS AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_438029
 2020-03-13 2020-05-12
 Austria hCoV-19/Austria/CeMM0188/2020
 C241T C1059T C3037T G13921K C14408T A23403G T25414Y G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_438030
 2020-03-13 2020-05-12
 Italy hCoV-19/Austria/CeMM0189/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC AAAAAAAAAAA29893-

EPI_ISL_438031
 2020-03-13 2020-05-12
 Austria hCoV-19/Austria/CeMM0190/2020
 C241T C3037T G12832A C14408T T22521K A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_438032
 2020-03-13 2020-05-12
 Austria hCoV-19/Austria/CeMM0191/2020
 T514C C17410T T22521K G28048T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_438033
 2020-03-13 2020-05-12
 Austria hCoV-19/Austria/CeMM0192/2020
 G1440A C7011T AAAAAAAAAAA29893-

EPI_ISL_440399
 2020-03-13 2020-05-12
 United Kingdom hCoV-19/England/CAMB-7558F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T C3037T C3373A C11195T C14408T A23403G G23755T T25202K GGG28881AAC

EPI_ISL_444455 EPI_ISL_454693
 2020-03-13 2020-05-28
 United States hCoV-19/USA/CA-QDX-03-2/2020
 G4285T C8782T C17747T A17858G C18060T T28144C C29642T AAAAAAAAAAAAAAAA29888-

EPI_ISL_444493 MT466071
 2020-03-13 2020-05-13
 Uruguay SARS-CoV-2/human/URY/Mdeo-1/2020
 C8782T C17470T C26088T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_444518 EPI_ISL_454692
 2020-03-13 2020-05-28
 United States hCoV-19/USA/WA-QDX-02-2/2020
 G2840A G5572T C8782T C17747T A17858G C18060T A26045G T28144C

EPI_ISL_445096
 2020-03-13 2020-05-15
 United States hCoV-19/USA/CA-SR0097/2020
 C8782T C17747T A17858G C18060T C21614T A24694T G26929A T28144C C29870A

EPI_ISL_445271
 2020-03-13 2020-05-15
 Chile hCoV-19/Chile/Chillan_1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T G10265A C14408T A23403G GGG28881AAC ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_445358
 2020-03-13 2020-05-15
 Chile hCoV-19/Chile/Santiago_62/2020
 T2C A4T A7591R C8782T C14599T G18826T C19983T C26088T C26873T T28144C ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_447121
 2020-03-13 2020-05-16
 Belgium hCoV-19/Belgium/ULG-6842/2020
 G1440A G2891A

EPI_ISL_447123
 2020-03-13 2020-05-16
 Belgium hCoV-19/Belgium/ULG-9535/2020
 C241T C3037T C14408T A23403G

EPI_ISL_447638 MT459874
 2020-03-13 2020-05-11
 Greece SARS-CoV-2/human/GRC/206_33492/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_447639 MT459875
 2020-03-13 2020-05-11
 Greece SARS-CoV-2/human/GRC/207_33548/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_447921
 2020-03-13 2020-05-19
 Thailand hCoV-19/Thailand/Bangkok_2294/2020
 C2708T C6312A T8987A G11083T C13730T C23929T C28311T AAAA29900-

EPI_ISL_450096
 2020-03-13 2020-05-20
 United States hCoV-19/USA/NY-PV09416/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T C1059T C3037T C14408T A23403G G25563T ACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29768-

EPI_ISL_450097
 2020-03-13 2020-05-20
 United States hCoV-19/USA/NY-PV09418/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G G25563T TAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29775-

EPI_ISL_450099
 2020-03-13 2020-05-20
 United States hCoV-19/USA/NY-PV09420/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTG1- C241T C1059T C3037T C14408T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450100
 2020-03-13 2020-05-20
 United States hCoV-19/USA/NY-PV09421/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C3037T C14408T A23403G G25644T GGG28881AAC GGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29778-

EPI_ISL_450101
 2020-03-13 2020-05-20
 United States hCoV-19/USA/NY-PV09422/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C3037T C14408T A23403G GGG28881AAC AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450105
 2020-03-13 2020-05-20
 United States hCoV-19/USA/NY-PV09428/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G G25563T C27964T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450111
 2020-03-13 2020-05-20
 United States hCoV-19/USA/NY-PV09434/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T T9070C T10960C C14408T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450112
 2020-03-13 2020-05-20
 United States hCoV-19/USA/NY-PV09435/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450514
 2020-03-13 2020-05-21
 Lebanon hCoV-19/Lebanon/S8_767/2020
 CT40AC C241T C3037T C6198A A8651- C8655T A8658G C13381T C14408T A23403G G25563T C25609T C28354T

EPI_ISL_451673 LR824235
 2020-03-13 2020-05-25
 Switzerland 100081
 C241T C3037T A8095R C14408T C15324T A23403G

EPI_ISL_451674 LR824237
 2020-03-13 2020-05-25
 Switzerland 100082
 C241T C3037T C12100T C14408T C15324T T22516D A23403G

EPI_ISL_451675 LR824236
 2020-03-13 2020-05-25
 Switzerland 100083
 C241T C3037T C4582Y C14408T C15324T C17336Y C19366M T19370H T19538Y A22398M T22516K A23403G

EPI_ISL_451676 LR824240
 2020-03-13 2020-05-25
 Switzerland 100084
 C241T C3037T C14408T T22372Y A23403G

EPI_ISL_451677 LR824238
 2020-03-13 2020-05-25
 Switzerland 100085
 C241T C3037T C6040T C9891Y C14408T A19298W T19482K G19542K A22368W A23403G

EPI_ISL_451678 LR824247
 2020-03-13 2020-05-25
 Switzerland 100086
 C241T C3037T C14408T C15324T C22347S C22498M A23403G G28690K C29733Y

EPI_ISL_451682 LR824249
 2020-03-13 2020-05-25
 Switzerland 100090
 C241T C1059T C3037T G11083T C14408T C16616T G22363K A23403G G25563T

EPI_ISL_451683 LR824248
 2020-03-13 2020-05-25
 Switzerland 100091
 C241T C3037T C14408T C15324T G22361K A23403G G28373T

EPI_ISL_451684 LR824250
 2020-03-13 2020-05-25
 Switzerland 100092
 C241T C643Y C3037T C3787T C3924Y C14408T C15251Y C15324T A19298W T19350Y T19456Y T19473W T19482K T19497W A22394R A23403G C27503Y G29779K

EPI_ISL_451685 LR824251
 2020-03-13 2020-05-25
 Switzerland 100093
 C241T C3037T C5175Y C14408T C15324T A19298W A23403G C23551Y

EPI_ISL_451689 LR824241
 2020-03-13 2020-05-25
 Switzerland 100097
 C241T C1059T C1824Y C3037T C14408T A17631M A19298W T19344Y A19357R C19366Y G19486S A19535R A23403G G25563T

EPI_ISL_451691 LR824244
 2020-03-13 2020-05-25
 Switzerland 100099
 C241T C3037T C14408T T19839C A22488R T22516W A23403G GGG28881AAC

EPI_ISL_452118 MT512446
 2020-03-13 2020-05-26
 United States SARS-CoV-2/human/USA/AZ-CDC-1911/2020
 C241T C1059T C3037T C13297T C14408T A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_452320
 2020-03-13 2020-05-27
 United States hCoV-19/USA/MI-MDHHS-SC20446/2020
 C241T G960R C1059T C3037T C4202T C14408T A23403G G25563T C28289Y

EPI_ISL_452327
 2020-03-13 2020-05-27
 China hCoV-19/Beijing/DT-travelAT01/2020
 C241T C1059T C3037T T8022G C14408T T19299G T20891G A23403G G25217T G25563T

EPI_ISL_452329
 2020-03-13 2020-05-27
 China hCoV-19/Beijing/DT-travelDE01/2020
 

EPI_ISL_452459
 2020-03-13 2020-05-27
 Spain hCoV-19/Spain/COV001889/2020
 C2676T C8782T G11083T C11620T C19263T G21770R C26088T T28144C

EPI_ISL_454011
 2020-03-13 2020-05-28
 Portugal hCoV-19/Portugal/PT0295/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C2143T C8782T T9477A C14805T G25785T G25979T T28144C C28657T C28863T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454012
 2020-03-13 2020-05-28
 Portugal hCoV-19/Portugal/PT0296/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C2143T C8782T T9477A C14805T G25785T G25979T T28144C C28657T C28863T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454013
 2020-03-13 2020-05-28
 Portugal hCoV-19/Portugal/PT0297/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C2143T C8782T T9477A C14805T G25785T G25979T T28144C C28657T C28863T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454014
 2020-03-13 2020-05-28
 Portugal hCoV-19/Portugal/PT0298/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3140T C14408T A23403G G24077T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454223
 2020-03-13 2020-05-28
 Portugal hCoV-19/Portugal/PT0499/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T G16744A A20268G G21190A A23403G T26301G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454329
 2020-03-13 2020-05-28
 Portugal hCoV-19/Portugal/PT0606/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T C19374T C21575T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454330
 2020-03-13 2020-05-28
 Portugal hCoV-19/Portugal/PT0607/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454526
 2020-03-13 2020-05-28
 India hCoV-19/India/NIV-1804/2020
 G1397A A3039G G11083T A18052G A25596G T28688C A28795G G29742T A29827T G29830C

EPI_ISL_454527
 2020-03-13 2020-05-28
 India hCoV-19/India/NIV-2387/2020
 C241T C3037T C14408T A23403G A26530G G26690T G29830T

EPI_ISL_454759
 2020-03-13 2020-05-29
 Netherlands hCoV-19/Netherlands/Utrecht_10010/2020
 ATTAAAGGTTTAT1- C241T C1059T C3037T C14408T C20844T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_454941
 2020-03-13 2020-05-29
 China hCoV-19/Wuhan/HB-WH3-179/2020
 

EPI_ISL_455355 MT539162 MW008562
 2020-03-13 2020-05-29
 United States SARS-CoV-2/human/USA/GA-EHC-009I/2020
 ATTAAA1- T490A C3177T C6040T C8782T G12478A T18736C C24034T T26729C G28077C T28144C C28896G A29700G AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_455378
 2020-03-13 2020-05-29
 China hCoV-19/Wuhan/HB-WH3-178/2020
 T953C TG14865- C22482T T25382C

EPI_ISL_455379
 2020-03-13 2020-05-29
 China hCoV-19/Wuhan/HB-WH3-180/2020
 AG14463-

EPI_ISL_455434
 2020-03-13 2020-05-29
 Mexico hCoV-19/Mexico/CDMX-InDRE_10/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C14408T A20755C A23403G G25563T TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_455445
 2020-03-13 2020-05-29
 Poland hCoV-19/Poland/PL_P32/2020
 C241T C3037T G4255T C14408T A20355G A23403G A26530G C29642T

EPI_ISL_455446
 2020-03-13 2020-05-29
 Poland hCoV-19/Poland/PL_P33/2020
 C241T C3037T G4255T C14408T A20355G A23403G A26530G C29642T

EPI_ISL_455587
 2020-03-13 2020-06-01
 Thailand hCoV-19/Thailand/Nakhonnayok_2829/2020
 A895G C2942T G4390T C8782T C9598T G20134T G24047A G27877T T28144C AAAAAAAAAAAA29892-

EPI_ISL_455607
 2020-03-13 2020-06-01
 Thailand hCoV-19/Thailand/Bangkok_2489/2020
 A895G C2942T G4390T C8782T C9598T G20134T G24047A G27877T T28144C AAAAAAAAAAAA29892-

EPI_ISL_455927
 2020-03-13 2020-06-01
 Thailand hCoV-19/Thailand/Bangkok-CONI-0133/2020
 ATTAAAGGTTT1- C2708T C6312A G11083T C13730T C23929T C28311T

EPI_ISL_455931
 2020-03-13 2020-06-01
 Thailand hCoV-19/Thailand/Bangkok-CONI-0137/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A895G C2942T G4390T C8782T C9598T G20134T G21296A G24047A G27877T T28144C AAAAAA29898-

EPI_ISL_457805 MT646075
 2020-03-13 2020-06-02
 United States SARS-CoV-2/human/USA/DC-HP00063/2020
 C6312A G11083T C11455T C13730T C23929T C28311T

EPI_ISL_460253 MT520328
 2020-03-13 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00514/2020
 ATTAAAGGTTTATACCTTCCC1- C241T C2416T C3037T C14408T A23403G G25563T G26233T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_460665
 2020-03-13 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_492/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2755A C3037T ATGTAGACAATTCTA6561- C14408T C15324T G22616T A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461115
 2020-03-13 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_680/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T C17125T T17247C G26144T G27201T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_462477
 2020-03-13 2020-06-08
 Spain hCoV-19/Spain/Andalucia202659/2020
 A8621G C8782T TG8827AT T9477A A10181G T11110A C13059T C14805T G14997T A15954G T16167A G25720A -26532A C26681T T28144C C28657T C28863T

EPI_ISL_463970
 2020-03-13 2020-06-11
 Canada hCoV-19/Canada/ON_MU-S1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C3037T C14408T G19469K A23403G G25217T G25563T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_463988
 2020-03-13 2020-06-11
 Canada hCoV-19/Canada/ON_MU-S5/2020
 ATTAAA1- C241T C1059T C3037T C14408T A23403G G25563T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_463993
 2020-03-13 2020-06-11
 Canada hCoV-19/Canada/ON_MU-S7/2020
 ATTAAAG1- T490A C3177T C8782T C16260T T18736C C24034T T26729C G28077C T28144C A29700G GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_464908
 2020-03-13 2020-06-11
 United Kingdom hCoV-19/England/20118039804/2020
 G1440A G2891R C10336Y C13423T A27669G

EPI_ISL_464923
 2020-03-13 2020-06-11
 United Kingdom hCoV-19/England/20118050804/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_464957
 2020-03-13 2020-06-11
 United Kingdom hCoV-19/England/20118112104/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_464997
 2020-03-13 2020-06-11
 United Kingdom hCoV-19/England/20118176104/2020
 C241T C3037T C14408T A23403G C25350T

EPI_ISL_465036
 2020-03-13 2020-06-11
 United Kingdom hCoV-19/England/20119026204/2020
 A2480G C2558T G11083T C14805T C16349Y C18877T G26144T

EPI_ISL_465059
 2020-03-13 2020-06-11
 United Kingdom hCoV-19/England/20119041204/2020
 A2480G C2558T G11083T A14185T C14805T G26144T

EPI_ISL_465079
 2020-03-13 2020-06-11
 United Kingdom hCoV-19/England/20119057204/2020
 A1515G C9223T G11083T C14805T T17247C A21625G G26144T C27972T

EPI_ISL_467105
 2020-03-13 2020-06-12
 Spain hCoV-19/Spain/COV001575/2020
 C8782T T9477A C14805T A23586G G25979T T28144C C28657T T28705C C28863T

EPI_ISL_467124
 2020-03-13 2020-06-12
 Spain hCoV-19/Spain/COV001580/2020
 C241T C3037T C14408T A20268G A23403G C28854T C29870A

EPI_ISL_467136
 2020-03-13 2020-06-12
 Spain hCoV-19/Spain/COV001585/2020
 C8782T T9477A C14805T C21997T G25979T T28144C C28657T C28863T

EPI_ISL_467142
 2020-03-13 2020-06-12
 Spain hCoV-19/Spain/COV001594/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T

EPI_ISL_467156
 2020-03-13 2020-06-12
 Spain hCoV-19/Spain/COV001577/2020
 C5730Y C8782T T9477A C14805T C16163Y G25979T G26769K C27526M T28144C C28657T C28863T C29870A

EPI_ISL_467159
 2020-03-13 2020-06-12
 Spain hCoV-19/Spain/COV001528/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T

EPI_ISL_467160
 2020-03-13 2020-06-12
 Spain hCoV-19/Spain/COV001598/2020
 C4012T C8782T T9477A C14805T G25979T T28144C C28657T C28863T C29870A

EPI_ISL_467175
 2020-03-13 2020-06-12
 Spain hCoV-19/Spain/COV001604/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T C29870A

EPI_ISL_467430
 2020-03-13 2020-06-14
 China hCoV-19/Harbin/HRB-25/2020
 C2401T G23236T C23525T G29449T AAAAAAAAAA29894-

EPI_ISL_467832 MT614464
 2020-03-13 2020-06-15
 United States SARS-CoV-2/human/USA/CA-QDX-43/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C379A C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467839 MT614471
 2020-03-13 2020-06-15
 United States SARS-CoV-2/human/USA/CA-QDX-67/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A652G C1059T C1387T C3037T C14408T A20755C A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467844 MT614527
 2020-03-13 2020-06-15
 United States SARS-CoV-2/human/USA/FL-QDX-121/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467845 MT614528
 2020-03-13 2020-06-15
 United States SARS-CoV-2/human/USA/GA-QDX-115/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C8782T T18736C C24034T T26729C C27635T G28077C T28144C A29567C A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467846 MT614529
 2020-03-13 2020-06-15
 United States SARS-CoV-2/human/USA/GA-QDX-116/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C8782T T18736C C24034T C26681T T26729C C27635T G28077C T28144C A29567C A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467847 MT614530
 2020-03-13 2020-06-15
 United States SARS-CoV-2/human/USA/GA-QDX-122/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C8782T T18736C C24034T T26729C C27635T G28077C T28144C A29567C A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467848 MT614561
 2020-03-13 2020-06-15
 United States SARS-CoV-2/human/USA/GA-QDX-152/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C8782T T18736C C24034T T26729C C27635T G28077C T28144C A29567C A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467849 MT614476
 2020-03-13 2020-06-15
 United States SARS-CoV-2/human/USA/GA-QDX-53/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C8782T C16466T T18736C C21575T C24034T T26729C G28077C T28144C C28849T A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467851 MT614532
 2020-03-13 2020-06-15
 United States SARS-CoV-2/human/USA/MA-QDX-127/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C14408T A23403G G25563T G26233T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467867 MT614536
 2020-03-13 2020-06-15
 United States SARS-CoV-2/human/USA/MD-QDX-113/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G C23895T G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467868 MT614488
 2020-03-13 2020-06-15
 United States SARS-CoV-2/human/USA/MI-QDX-26/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467874 MT614537
 2020-03-13 2020-06-15
 United States SARS-CoV-2/human/USA/NJ-QDX-123/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467876 MT614539
 2020-03-13 2020-06-15
 United States SARS-CoV-2/human/USA/NJ-QDX-133/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T AAGTCATTT686- C3037T C14408T C18877T G20014T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467878 MT614541
 2020-03-13 2020-06-15
 United States SARS-CoV-2/human/USA/NJ-QDX-144/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T A2497G C3037T C14408T A22666G A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467902 MT614504
 2020-03-13 2020-06-15
 United States SARS-CoV-2/human/USA/NY-QDX-75/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T C14408T C14585T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467905 MT614555
 2020-03-13 2020-06-15
 United States SARS-CoV-2/human/USA/TN-QDX-126/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467909 MT614556
 2020-03-13 2020-06-15
 United States SARS-CoV-2/human/USA/UT-QDX-118/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G2840A G5572T C8782T C17747T A17858G C18060T A26045G T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467910 MT614557
 2020-03-13 2020-06-15
 United States SARS-CoV-2/human/USA/UT-QDX-119/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C6040T C8782T G12478A T18736C G19967T C24034T T26729C G28077C T28144C C28896G A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467911 MT614558
 2020-03-13 2020-06-15
 United States SARS-CoV-2/human/USA/UT-QDX-120/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C16308T C17747T A17858G C18060T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467912 MT614559
 2020-03-13 2020-06-15
 United States SARS-CoV-2/human/USA/UT-QDX-131/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467913 MT614560
 2020-03-13 2020-06-15
 United States SARS-CoV-2/human/USA/UT-QDX-132/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C22450T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467918 MT614513
 2020-03-13 2020-06-15
 United States SARS-CoV-2/human/USA/UT-QDX-27/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11878A C14408T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467919 MT614514
 2020-03-13 2020-06-15
 United States SARS-CoV-2/human/USA/UT-QDX-49/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C8782T T18736C C24034T T26729C G28077C T28144C A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467921 MT614516
 2020-03-13 2020-06-15
 United States SARS-CoV-2/human/USA/UT-QDX-63/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C6040T C8782T G12478A T18736C C24034T T26729C G28077C T28144C C28896G A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467924 MT614519
 2020-03-13 2020-06-15
 United States SARS-CoV-2/human/USA/UT-QDX-77/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467926 MT614521
 2020-03-13 2020-06-15
 United States SARS-CoV-2/human/USA/WA-QDX-22/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467927 MT614522
 2020-03-13 2020-06-15
 United States SARS-CoV-2/human/USA/WA-QDX-62/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G4790A C8782T C18060T T28144C G28907T A29824G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467960
 2020-03-13 2020-06-16
 United States hCoV-19/USA/CA-SR0430/2020
 C241T C1059T A2018G C3037T C14408T A23403G G25563T

EPI_ISL_468388 MT628124
 2020-03-13 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1413/2020
 C241T C379A C1059T C3037T C14408T A23403G G25012A G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_468507 MT628230
 2020-03-13 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1576/2020
 C4776T A6867G C8782T C17747Y A17858G C18060T G28086T T28144C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_468560 MT627407
 2020-03-13 2020-06-16
 United States SARS-CoV-2/human/USA/CA-QDX-101/2020
 C241T C379A C1059T C3037T C7039T C14408T A23403G G25563T

EPI_ISL_468561 MT627408
 2020-03-13 2020-06-16
 United States SARS-CoV-2/human/USA/CA-QDX-103/2020
 A187G C241T C3037T C14408T A23403G C25916T

EPI_ISL_468562 MT627409
 2020-03-13 2020-06-16
 United States SARS-CoV-2/human/USA/CA-QDX-110/2020
 ATTAAAGGTTTATACCTTC1- C241T C1059T C3037T C9967T C14408T A23403G G25563T C27964T

EPI_ISL_468563 MT627410
 2020-03-13 2020-06-16
 United States SARS-CoV-2/human/USA/CA-QDX-111/2020
 T490A C3177T C6040T C8782T G12478A T18736C C24034T T26729C G28077C T28144C C28896G A29700G

EPI_ISL_468564 MT627411
 2020-03-13 2020-06-16
 United States SARS-CoV-2/human/USA/CA-QDX-83/2020
 C241T C1059T C3037T C14408T G15760A A23403G G25563T

EPI_ISL_468565 MT627412
 2020-03-13 2020-06-16
 United States SARS-CoV-2/human/USA/CA-QDX-84/2020
 C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAA29891-

EPI_ISL_468566 MT627413
 2020-03-13 2020-06-16
 United States SARS-CoV-2/human/USA/CA-QDX-86/2020
 C241T C3037T C14408T A23403G

EPI_ISL_468567 MT627414
 2020-03-13 2020-06-16
 United States SARS-CoV-2/human/USA/CA-QDX-92/2020
 C4115T C8782T C17747T A17858G C18060T A22005G C25046T T28144C

EPI_ISL_468568 MT627415
 2020-03-13 2020-06-16
 United States SARS-CoV-2/human/USA/CA-QDX-97/2020
 C241T C3037T C14408T C19488T A23403G C28826T GGG28881AAC

EPI_ISL_468569 MT627416
 2020-03-13 2020-06-16
 United States SARS-CoV-2/human/USA/CA-QDX-98/2020
 C241T C1059T A2165G C3037T C14408T A23403G G25563T G29711T

EPI_ISL_468571 MT627418
 2020-03-13 2020-06-16
 United States SARS-CoV-2/human/USA/CO-QDX-107/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_468588 MT627435
 2020-03-13 2020-06-16
 United States SARS-CoV-2/human/USA/NY-QDX-96/2020
 C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_468589 MT627436
 2020-03-13 2020-06-16
 United States SARS-CoV-2/human/USA/OK-QDX-93/2020
 AAGTCATTT686- C14925T

EPI_ISL_468590 MT627437
 2020-03-13 2020-06-16
 United States SARS-CoV-2/human/USA/WA-QDX-104/2020
 ATT1- T137C A4590G C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_468738
 2020-03-13 2020-06-17
 Belgium hCoV-19/Belgium/UGent-90/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_468739
 2020-03-13 2020-06-17
 Belgium hCoV-19/Belgium/UGent-91/2020
 C241T C3037T C4809T G12092T C14408T A23403G

EPI_ISL_468740
 2020-03-13 2020-06-17
 Belgium hCoV-19/Belgium/UGent-92/2020
 C241T C3037T G4255T C14408T A23403G A26530G

EPI_ISL_468741
 2020-03-13 2020-06-17
 Belgium hCoV-19/Belgium/UGent-93/2020
 C241T C1059T C3037T C14408T A23403G A25035G G25563T

EPI_ISL_471230
 2020-03-13 2020-06-19
 United States hCoV-19/USA/WI-WSLH-200065/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475086
 2020-03-13 2020-06-23
 Sweden hCoV-19/Sweden/20-50327/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T

EPI_ISL_475087
 2020-03-13 2020-06-23
 Sweden hCoV-19/Sweden/20-50335/2020
 C241T C1059T C3037T C8961T C14408T A23403G G24368T G25563T

EPI_ISL_475088
 2020-03-13 2020-06-23
 Sweden hCoV-19/Sweden/20-50336/2020
 C241T C1059T C3037T C9565T C14408T A23403G G24368T G25563T

EPI_ISL_475089
 2020-03-13 2020-06-23
 Sweden hCoV-19/Sweden/20-50337/2020
 C241T C3037T C14408T C20384T A23403G C27046T GGG28881AAC A29442T

EPI_ISL_475090
 2020-03-13 2020-06-23
 Sweden hCoV-19/Sweden/20-50341/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T

EPI_ISL_475091
 2020-03-13 2020-06-23
 Sweden hCoV-19/Sweden/20-50342/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T

EPI_ISL_475136
 2020-03-13 2020-06-23
 Sweden hCoV-19/Sweden/20-50320/2020
 G1440A G2891A C7011T G28812T

EPI_ISL_475855
 2020-03-13 2020-06-25
 Austria hCoV-19/Austria/CeMM0427/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T19839C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476782
 2020-03-13 2020-06-25
 United States hCoV-19/USA/CA-CZB-1765/2020
 ATTAAA1- C241T C3037T C14408T A20268G G22249T A23403R AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_476783
 2020-03-13 2020-06-25
 United States hCoV-19/USA/CA-CZB-1766/2020
 ATTA1- C8782T C17747T A17858G C18060T A24694T G28086T T28144C A29878M

EPI_ISL_476784
 2020-03-13 2020-06-25
 United States hCoV-19/USA/CA-CZB-1767/2020
 G10642T C11074T G11083T C14805T T17247C G26144T

EPI_ISL_476814
 2020-03-13 2020-06-26
 Singapore hCoV-19/Singapore/478/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476907 MT827827
 2020-03-13 2020-06-27
 United States SARS-CoV-2/human/USA/WA-UW-608/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T C3037T C14408T A23403G G25563T G29553A

EPI_ISL_476908 MT827843
 2020-03-13 2020-06-27
 United States SARS-CoV-2/human/USA/WA-UW-623/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C1469T G11083T C14805T T17247C G26144T G29254T TG29867AA C29870A

EPI_ISL_476915 MT827845
 2020-03-13 2020-06-27
 United States SARS-CoV-2/human/USA/CT-UW-650/2020
 ATTAAAGGTTT1- G116C C241T C3037T C14408T A23403G GGG28881AAC TG29867AA C29870A

EPI_ISL_476916 MT827833
 2020-03-13 2020-06-27
 United States SARS-CoV-2/human/USA/CT-UW-651/2020
 ATTAAAGG1- C241T C3037T C14408T A23403G GGG28881AAC -29904AAAAAAAAAAAAAAA

EPI_ISL_476917 MT827842
 2020-03-13 2020-06-27
 United States SARS-CoV-2/human/USA/CT-UW-652/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGC1- C241T C1059T A2018G C3037T C14408T A23403G G25563T TG29867AA C29870A -29904AAAAAAAAAAAAAAAAAA

EPI_ISL_476918 MT827834
 2020-03-13 2020-06-27
 United States SARS-CoV-2/human/USA/CT-UW-653/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- AC35WT C241T C3037T C14408T A23403G GGG28881AAC -29904AAAAAAAAAAAAAA

EPI_ISL_476921 MT827829
 2020-03-13 2020-06-27
 United States SARS-CoV-2/human/USA/WA-UW-662/2020
 ATTAAAGG1- C36T C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_476928 MT827828
 2020-03-13 2020-06-27
 United States SARS-CoV-2/human/USA/WA-UW-676/2020
 A1- AC35TT C241T C1059T C3037T C14408T A23403G G25563T G29553A

EPI_ISL_476930 MT827817
 2020-03-13 2020-06-27
 United States SARS-CoV-2/human/USA/WA-UW-683/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCT1- C5467T C8782T C17747T A17858G C18060T T28144C C29119T -29904AAAAAAAAAAAA

EPI_ISL_476933 MT827821
 2020-03-13 2020-06-27
 United States SARS-CoV-2/human/USA/WA-UW-687/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACT1- G4510T C8782T C17747T A17858G C18060T G27906T T28144C -29904AAAAAAAAAAAAAA

EPI_ISL_476935 MT827810
 2020-03-13 2020-06-27
 United States SARS-CoV-2/human/USA/WA-UW-696/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A31T C36T C6285T C8782T C17747T A17858G C18060T G27364T T28144C

EPI_ISL_476938 MT827840
 2020-03-13 2020-06-27
 United States SARS-CoV-2/human/USA/WA-UW-864/2020
 A1- C36T C140T TAG4879- C8782T C17747T A17858G C18060T T28144C -29904AAAAAAAAAAAAAAAA

EPI_ISL_479878
 2020-03-13 2020-07-01
 Japan hCoV-19/Japan/PG-0168/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C5787T C11752T C19170A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479896
 2020-03-13 2020-07-01
 Japan hCoV-19/Japan/PG-0191/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACT1- C241T C3037T C10833T C14408T C18877T A23403G G25563T C26735T TTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29821-

EPI_ISL_479897
 2020-03-13 2020-07-01
 Japan hCoV-19/Japan/PG-0192/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C3037T C10833T C14408T C18877T A23403G G25563T C26735T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_479904
 2020-03-13 2020-07-01
 Japan hCoV-19/Japan/PG-0201/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C3656T C8782T G16381A T17877C T28144C G28878A G29742A GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_479932
 2020-03-13 2020-07-01
 Japan hCoV-19/Japan/PG-0241/2020
 ATTAAAGGTTT1- T4402C G5062T C8782T G12070T T28144C G29742T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_480002
 2020-03-13 2020-07-01
 Japan hCoV-19/Japan/PG-0327/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T G16381A T17877C TTTGGGTGTTTA21982- T28144C G28878A G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480104
 2020-03-13 2020-07-01
 Japan hCoV-19/Japan/PG-0439/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACT1- C4784T C8782T G16381A T17877C T28144C G28878A G29742A TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_480105
 2020-03-13 2020-07-01
 Japan hCoV-19/Japan/PG-0440/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACT1- C8782T G16381A T17877C T28144C G28878A G29742A TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_480959
 2020-03-13 2020-07-02
 Spain hCoV-19/Spain/Donostia-San_Sebastian_COV003214/2020
 C8782T T9477A C14805T G25979T G28109T T28144C C28657T C28863T C29025Y

EPI_ISL_481549
 2020-03-13 2020-07-03
 Finland hCoV-19/Finland/13M6S4/2020
 C241T C3037T C5512T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_482484
 2020-03-13 2020-07-03
 Canada hCoV-19/Canada/MB_80/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G G25563T ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_483545
 2020-03-13 2020-07-07
 Bahrain hCoV-19/Bahrein/BAH-04/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T19839C G21761T A23403G GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_484189
 2020-03-13 2020-07-08
 United Kingdom hCoV-19/England/GSTT-265E34A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485002
 2020-03-13 2020-07-09
 South Korea hCoV-19/South Korea/A3/2020
 ATTAAA1- T4402C G5062T C8782T G17814T T28144C A29903-

EPI_ISL_485835 MT739441 MT913054
 2020-03-13 2020-07-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0534/2020
 ATTA1- C241T C2416T C3037T C14408T A23403G G25563T

EPI_ISL_485836 MT739442 MT913055
 2020-03-13 2020-07-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0535/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C1059T C3037T C14408T A23403G G25563T G28968T G29688T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_485839 MT739445 MT913058
 2020-03-13 2020-07-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0538/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C8782T C17747T A17858G C18060T C18486T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_485846 MT739452 MT913065
 2020-03-13 2020-07-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0545/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25563T C29870A

EPI_ISL_485852 MT739458 MT913071
 2020-03-13 2020-07-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0551/2020
 ATTA1- C241T C3037T C14408T C18877T A23403G G25563T G28086T AA29902-

EPI_ISL_485855 MT739461 MT913074
 2020-03-13 2020-07-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0554/2020
 ATTAAAGGTTTATACCT1- C6027T A10236G G11083T C14805T T17247C G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_486105
 2020-03-13 2020-07-10
 United States hCoV-19/USA/WA-UW-682/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCAT1- A8539T C8782T T15927G C17747T A17858G C18060T C26936T T28144C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_486106
 2020-03-13 2020-07-10
 United States hCoV-19/USA/WA-UW-688/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- -65TNNN C241T C1059T C3037T C14408T G16912T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_486427 MT738101
 2020-03-13 2020-07-09
 Brazil SARS-CoV-2/human/BRA/HIAE-SP03/2020
 C241T C3037T T7168C C11022T C14408T A23403G C25904T T27299C GGG28881AAC T29148C

EPI_ISL_488273
 2020-03-13 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F7BA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C541T C1059T C3037T G11083T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488758
 2020-03-13 2020-07-14
 United Kingdom hCoV-19/England/NORT-2813B1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7072T A8072G T10057C C14408T C16329T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488791
 2020-03-13 2020-07-14
 United Kingdom hCoV-19/England/NORT-2841D2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488820
 2020-03-13 2020-07-14
 United Kingdom hCoV-19/England/NORT-2841A5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488834
 2020-03-13 2020-07-14
 United Kingdom hCoV-19/England/NORT-281384/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6726T G11083T C14805T G15444T A17205G G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492332
 2020-03-13 2020-07-20
 United Kingdom hCoV-19/England/BRIS-18545A9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C541T C1059T C3037T G11083T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492557
 2020-03-13 2020-07-20
 United Kingdom hCoV-19/England/BRIS-130B7E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C2416Y A2480G C2558T C2706T A7025G C9724T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492619
 2020-03-13 2020-07-20
 United Kingdom hCoV-19/England/BRIS-130B8D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T C2706T A7025G C9724T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492630
 2020-03-13 2020-07-20
 United Kingdom hCoV-19/England/BRIS-1309CF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G C9223T G11083T C14805T T17247C A21625G G26144T G29427K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492675
 2020-03-13 2020-07-20
 United Kingdom hCoV-19/England/BRIS-130B32/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T19839C A23403G G25552T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492719
 2020-03-13 2020-07-20
 United Kingdom hCoV-19/England/BRIS-1309DE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G C9223T G11083T C14805T T17247C A21625G G26144T G29427K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492726
 2020-03-13 2020-07-20
 United Kingdom hCoV-19/England/BRIS-130ADB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC A29078G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492730
 2020-03-13 2020-07-20
 United Kingdom hCoV-19/England/BRIS-130AEA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC A29078G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_497831
 2020-03-13 2020-07-25
 China hCoV-19/Hong Kong/HKU-200723-064/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T9172C A10948G C14408T A23403G G26730T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_499814
 2020-03-13 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A4AF1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- ATG1605- G18315A

EPI_ISL_500064
 2020-03-13 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A4A6A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A2480G C2558T G11083T A13623T C14805T C25568T G26144T

EPI_ISL_500071
 2020-03-13 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A4AE2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G A26530R T27280C

EPI_ISL_500088
 2020-03-13 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A4DAD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A2480G C2558T G11083T C14805T G26144T

EPI_ISL_500598
 2020-03-13 2020-07-29
 Australia hCoV-19/Australia/NSW2011/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1397A G4255A G9431T C10319T G11083T C16466T G19117A A20047G T28688C G29742T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500628
 2020-03-13 2020-07-29
 Australia hCoV-19/Australia/NSW2147/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G G29348T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_507030 MT820488
 2020-03-13 2020-07-30
 Saudi Arabia SARS-CoV-2/human/SAU/KAIMRC69/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCA1- C241T C3037T C14408T C18877T A23403G G25563T C26735T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507050
 2020-03-13 2020-08-03
 United Kingdom hCoV-19/England/LOND-124D08A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- A2480G C2558T C7279T G11083T C14805T G26144T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_508769 MT834611
 2020-03-13 2020-08-04
 United States SARS-CoV-2/human/USA/FL-BPHL-0565/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C8782T C16457T C17747T A17858G C18060T T28144C TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_508772 MT834614
 2020-03-13 2020-08-04
 United States SARS-CoV-2/human/USA/FL-BPHL-0568/2020
 ATTAAAGGTTTATACC1- G599A C7162T C8782T C16457T C17747T A17858G C18060T T28144C CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_508874
 2020-03-13 2020-08-04
 France hCoV-19/France/ARA08589/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G G25563T C26013T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_508948
 2020-03-13 2020-08-04
 France hCoV-19/France/ARA08417/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGT1- C241T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_509695 MT844047
 2020-03-13 2020-08-05
 Guatemala SARS-CoV-2/human/GTM/CDC-1227/2020
 C241T C14408T A20268G A23403G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_509716 MT846420
 2020-03-13 2020-08-05
 United States SARS-CoV-2/human/USA/FL-BPHL-0658/2020
 ATT1- C1191T C8782T C17747T A17858G C18060T G25445T A28081G T28144C CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_509718 MT846422
 2020-03-13 2020-08-05
 United States SARS-CoV-2/human/USA/FL-BPHL-0660/2020
 ATTAA1- C8782T C16457T C17747T A17858G C18060T T28144C TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_509724 MT846428
 2020-03-13 2020-08-05
 United States SARS-CoV-2/human/USA/FL-BPHL-0666/2020
 ATTA1- C241T C3037T T6294C C14408T A20268G A23403G CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_509725 MT846429
 2020-03-13 2020-08-05
 United States SARS-CoV-2/human/USA/FL-BPHL-0667/2020
 AT1- C241T C3037T T6294C C14408T A20268G A23403G ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_509726 MT846430
 2020-03-13 2020-08-05
 United States SARS-CoV-2/human/USA/FL-BPHL-0668/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C241T C3037T C4002T C6543T G10097A C13536T C14408T A23403G C23731T GGG28881AAC G28908T TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_509727 MT846431
 2020-03-13 2020-08-05
 United States SARS-CoV-2/human/USA/FL-BPHL-0669/2020
 ATTA1- C241T C3037T C5467T C8389T C14408T A23403G G24050T G25563T C26191T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_509728 MT846432
 2020-03-13 2020-08-05
 United States SARS-CoV-2/human/USA/FL-BPHL-0670/2020
 AT1- C241T C1059T C3037T C14408T A23403G G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_510269
 2020-03-13 2020-08-06
 Spain hCoV-19/Spain/COV004027/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C8782T C18084T T18630C C26088T T28144C AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_510312
 2020-03-13 2020-08-06
 Spain hCoV-19/Spain/COV005003/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A20268G A23403G G29734C CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_510328
 2020-03-13 2020-08-06
 Spain hCoV-19/Spain/COV005019/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C3037T C14408T G17814T A19810G A20268G A23403G TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_513416 MT886290
 2020-03-13 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0003/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAA1- C241T C1059T C3037T C14408T A23403G G25563T AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513418 MT886292
 2020-03-13 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0005/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATC1- C241T C3037T C14408T C22450T A23403G AATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29814-

EPI_ISL_513420 MT886294
 2020-03-13 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0007/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAA1- C241T C3037T C14408T C22450T A23403G A25864G AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513423 MT886297
 2020-03-13 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0010/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTG1- C241T C3037T C14408T C17550T C22450T A23403G AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513427 MT886301
 2020-03-13 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0014/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAA1- G1440A G2891A C7011T C12876T G25593C AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513432 MT886306
 2020-03-13 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0019/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAA1- C241T C3037T C14408T C22450T A23403G AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513434 MT886308
 2020-03-13 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0022/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAA1- C241T C1059T C3037T C14408T A23403G G25563T AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513435 MT886309
 2020-03-13 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0023/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAA1- C241T C1059T C3037T C14408T A23403G G25563T AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513464 MT886338
 2020-03-13 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0053/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAA1- A5317G C8782T C17747T A17858G C18060T A19476G T28144C AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_516267
 2020-03-13 2020-08-20
 United States hCoV-19/USA/MI-MDHHS-SC21540/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C11109T C14408T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_517770
 2020-03-13 2020-08-24
 Peru hCoV-19/Peru/INS-061/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAA1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC G29179K ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_523960
 2020-03-13 2020-08-27
 Moldova hCoV-19/Moldova/ChVir7768/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G G29737T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_523994
 2020-03-13 2020-08-27
 Peru hCoV-19/Peru/LAM-INS-073/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAA1- C241T C313T C936T C3037T C14408T C17333T A23403G GGG28881AAC ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_524665
 2020-03-13 2020-08-28
 United Kingdom hCoV-19/England/LOND-1260476/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525613
 2020-03-13 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-14811-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C8782T T10771C C17747T A17858G C18060T T28144C TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_526938
 2020-03-13 2020-09-02
 Denmark hCoV-19/Faroe Islands/HFS-05/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16289T A23403G G25429T AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_526939
 2020-03-13 2020-09-02
 Denmark hCoV-19/Faroe Islands/HFS-06/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G24368T C25511T G25563T AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_526940
 2020-03-13 2020-09-02
 Denmark hCoV-19/Faroe Islands/HFS-10/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1302T C3037T C6196T C14408T A23403G G25563T C25708T AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_528039
 2020-03-13 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42188884/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T T21715G A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528040
 2020-03-13 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42189201/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C313T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_528041
 2020-03-13 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42189220/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G C28344T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528042
 2020-03-13 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42189239/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A20268G A23403G C28854T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528043
 2020-03-13 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42189257/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G5008T C14408T C15324T G18525T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528044
 2020-03-13 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42189386/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C5979T C14408T C15324T A23403G TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_528045
 2020-03-13 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42189451/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- ATG1605- C18486T G29032A G29616T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528046
 2020-03-13 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42189582/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C8293T C14408T T18488C A23403G T24739C A26530G TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_528047
 2020-03-13 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42189643/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528048
 2020-03-13 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42189647/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G4300T C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528049
 2020-03-13 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42189725/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C14408T A20268G A23403G C28854T TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_528050
 2020-03-13 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42189772/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528051
 2020-03-13 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42189773/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528052
 2020-03-13 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42189793/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA