INITIAL DELETIONS

Patient 01 MT270101.1 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT 1 -
Patient 02 MT270112.1 ATTAAAGGTTTATAC 1 -
Patient 03 MT270103.1 ATTAAAGGTTTATACCTTCCCAGGTAACA 1 -
Patient 04 MT270102.1 ATTAAAGGTTTATACCTTCCCAGGTAACA 1 -
Patient 05 MT270105.1 ATTAAAGGTT 1 -
Patient 06 MT270104.1 ATTAAAGGTTTATA 1 -
Patient 07 MT270106.1 AT 1 -
Patient 08 MT270107.1 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT 1 -
Patient 09 MT270108.1 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT 1 -
Patient 10 MT270110.1 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT 1 -
Patient 11 MT270109.1 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT 1 -
Patient 14 MT270111.1 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT 1 -
Patient 15 MT270114.1 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT 1 -
Patient 16 MT270113.1 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTG 1 -

TERMINAL DELETIONS

Patient 01 MT270101.1 CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 29837 -
Patient 02 MT270112.1                                      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 29874 -
Patient 03 MT270103.1                               TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 29867 -
Patient 04 MT270102.1                             AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 29865 -
Patient 05 MT270105.1                                   AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 29871 -
Patient 06 MT270104.1                       TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 29859 -
Patient 07 MT270106.1                               TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 29867 -
Patient 08 MT270107.1 CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 29837 -
Patient 09 MT270108.1 CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 29837 -
Patient 10 MT270110.1 CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 29837 -
Patient 11 MT270109.1 CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 29837 -
Patient 14 MT270111.1 CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 29837 -
Patient 15 MT270114.1                  CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 29854 -
Patient 16 MT270113.1     GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 29841 -

THE REFERENCE SEQUENCE

>NC_045512.2 Wuhan-Hu-1, complete genome

CHANGES/MUTATIONS FROM THE REFERENCE SEQUENCE

>MT270101.1 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/DEU/BavPat1-ChVir929/2020, complete genome
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT 1 ------------------------------------------------------
C 241 T
C 3037 T
A 23403 G
CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 29837 -------------------------------------------------------------------

>MT270102.1 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/DEU/BavPat4-ChVir1019/2020, complete genome
ATTAAAGGTTTATACCTTCCCAGGTAACA 1 -----------------------------
C 241 T
C 3037 T
G 6446 A
C 9891 Y
A 23403 G
AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 29865 ---------------------------------------

>MT270103.1 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/DEU/BavPat3-ChVir1020/2020, complete genome
ATTAAAGGTTTATACCTTCCCAGGTAACA 1 -----------------------------
C 241 T
C 3037 T
A 23403 G
TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 29867 -------------------------------------

>MT270104.1 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/DEU/BavPat6-ChVir1247/2020, complete genome
ATTAAAGGTTTATA 1 --------------
C 241 T
C 3037 T
G 6446 A
A 23403 G
TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 29859 ---------------------------------------------

>MT270105.1 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/DEU/BavPat5-ChVir1248/2020, complete genome
ATTAAAGGTT 1 ----------
C 241 T
C 3037 T
G 6446 A
A 23403 G
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 29871 ---------------------------------

>MT270106.1 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/DEU/BavPat7-ChVir1289/2020, complete genome
AT 1 --
C 241 T
C 3037 T
G 6446 A
A 23403 G
TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 29867 -------------------------------------

>MT270107.1 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/DEU/BavPat8-ChVir1356/2020, complete genome
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT 1 ------------------------------------------------------
C 241 T
C 3037 T
G 6446 A
A 23403 G
CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 29837 -------------------------------------------------------------------

>MT270108.1 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/DEU/BavPat9-ChVir1433/2020, complete genome
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT 1 ------------------------------------------------------
C 241 T
C 3037 T
G 6446 A
C 22323 T
A 23403 G
CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 29837 -------------------------------------------------------------------

>MT270109.1 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/DEU/BavPat11-ChVir1459/2020, complete genome
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT 1 ------------------------------------------------------
C 241 T
C 3037 T
G 6446 A
A 23403 G
CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 29837 -------------------------------------------------------------------

>MT270110.1 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/DEU/BavPat10-ChVir1482/2020, complete genome
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT 1 ------------------------------------------------------
C 241 T
C 3037 T
G 6446 A
A 23403 G
CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 29837 -------------------------------------------------------------------

>MT270111.1 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/DEU/BavPat14-ChVir1483/2020, complete genome
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT 1 ------------------------------------------------------
C 241 T
C 3037 T
G 6446 A
A 23403 G
CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 29837 -------------------------------------------------------------------

>MT270112.1 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/DEU/BavPat2-ChVir984-ChVir1017/2020, complete genome
ATTAAAGGTTTATAC 1 ---------------
C 241 T
C 3037 T
A 23403 G
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 29874 ------------------------------

>MT270113.1 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/DEU/BavPat16-ChVir1530/2020, complete genome
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTG 1 -----------------------------------------------------
C 241 T
C 3037 T
G 6446 A
A 23403 G
GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 29841 ---------------------------------------------------------------

>MT270114.1 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/DEU/BavPat15-ChVir1484-ChVir1536/2020, complete genome
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT 1 ------------------------------------------------------
C 241 T
C 3037 T
A 5714 G
A 9019 R
T 15152 Y
C 17410 T
A 17635 R
T 20020 Y
A 23403 G
C 25466 T
A 28549 R
CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 29854 --------------------------------------------------