Identification Tags
 Collection Date; Submission Date
 Country; Name
 Mutations

EPI_ISL_402123 GWHABKF00000001 MT019529
 2019-12-24 2020-01-11
 China BetaCoV/Wuhan/IPBCAMS-WH-01/2019
 A3778G A8388G T8987A AAAA29900-

EPI_ISL_402123 GWHABKF00000001 MT019529
 2019-12-24 2020-01-11
 China BetaCoV/Wuhan/IPBCAMS-WH-01/2019
 A3778G A8388G T8987A AAAA29900-

EPI_ISL_406798 CNA0007332 LR757998 NMDC60013002-01
 2019-12-26 2020-01-30
 China WH01
 ATTAAAGGTTTATACCTTCCCAGGT1- C6968A T11764A AAAAAAAAAAAA29892-

EPI_ISL_406798 CNA0007332 LR757998 NMDC60013002-01
 2019-12-26 2020-01-30
 China WH01
 ATTAAAGGTTTATACCTTCCCAGGT1- C6968A T11764A AAAAAAAAAAAA29892-

EPI_ISL_406798 CNA0007332 LR757998 NMDC60013002-01
 2019-12-26 2020-01-30
 China WH01
 ATTAAAGGTTTATACCTTCCCAGGT1- C6968A T11764A AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_402119 NMDC60013084-01
 2019-12-30 2020-01-10
 China BetaCoV/Wuhan/IVDC-HB-01/2019
 AAAAAAAAAAAA29892-

EPI_ISL_402121 NMDC60013086-01
 2019-12-30 2020-01-10
 China BetaCoV/Wuhan/IVDC-HB-05/2019
 G20670A G20679A AAAAAAAAAAAA29892-

EPI_ISL_402124 GWHABKL00000001 MN996528
 2019-12-30 2020-01-11
 China WIV04
 AAAAAAAAAAAA29892-

EPI_ISL_402124 GWHABKL00000001 MN996528
 2019-12-30 2020-01-11
 China WIV04
 AAAAAAAAAAAA29892-

EPI_ISL_402127 GWHABKK00000001 MN996527
 2019-12-30 2020-01-18
 China WIV02
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- G21316A A24325G TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_402127 GWHABKK00000001 MN996527
 2019-12-30 2020-01-18
 China WIV02
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- G21316A A24325G TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_402128 GWHABKM00000001 MN996529
 2019-12-30 2020-01-18
 China WIV05
 ATTAAAGGTTTA1- G7016A A21137G AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_402128 GWHABKM00000001 MN996529
 2019-12-30 2020-01-18
 China WIV05
 ATTAAAGGTTTA1- G7016A A21137G AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_402129 GWHABKN00000001 MN996530
 2019-12-30 2020-01-18
 China WIV06
 ATTAAAGGTTTATA1- ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_402129 GWHABKN00000001 MN996530
 2019-12-30 2020-01-18
 China WIV06
 ATTAAAGGTTTATA1- ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_402130 GWHABKO00000001 MN996531
 2019-12-30 2020-01-18
 China WIV07
 ATTAAAGGTTTAT1- A8001C C9534T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_402130 GWHABKO00000001 MN996531
 2019-12-30 2020-01-18
 China WIV07
 ATTAAAGGTTTAT1- A8001C C9534T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_402132 NMDC60013088-01
 2019-12-30 2020-01-19
 China BetaCoV/Wuhan/HBCDC-HB-01/2019
 ATTAAAGGTTT1- T21656A AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_403929 GWHABKI00000001 MT019532
 2019-12-30 2020-01-21
 China BetaCoV/Wuhan/IPBCAMS-WH-04/2019
 AAAAAAAAAAAAA29891-

EPI_ISL_403929 GWHABKI00000001 MT019532
 2019-12-30 2020-01-21
 China BetaCoV/Wuhan/IPBCAMS-WH-04/2019
 AAAAAAAAAAAAA29891-

EPI_ISL_403930 GWHABKH00000001 MT019531
 2019-12-30 2020-01-21
 China BetaCoV/Wuhan/IPBCAMS-WH-03/2019
 T6996C AAAA29900-

EPI_ISL_403930 GWHABKH00000001 MT019531
 2019-12-30 2020-01-21
 China BetaCoV/Wuhan/IPBCAMS-WH-03/2019
 T6996C AAAA29900-

EPI_ISL_403931 GWHABKG00000001 MT019530
 2019-12-30 2020-01-21
 China BetaCoV/Wuhan/IPBCAMS-WH-02/2019
 T104A TT111CG CT119GC G124A AAAAAAAAAAAAAA29890-

EPI_ISL_403931 GWHABKG00000001 MT019530
 2019-12-30 2020-01-21
 China BetaCoV/Wuhan/IPBCAMS-WH-02/2019
 T104A TT111CG CT119GC G124A AAAAAAAAAAAAAA29890-

EPI_ISL_412898 NMDC60013090-01
 2019-12-30 2020-02-28
 China BetaCoV/Wuhan/HBCDC-HB-02/2019
 ATTAAAGGTTT1- A24325G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_412899 NMDC60013091-01
 2019-12-30 2020-02-28
 China BetaCoV/Wuhan/HBCDC-HB-03/2019
 ATTAAAGGTTT1- AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_412900 NMDC60013092-01
 2019-12-30 2020-02-28
 China BetaCoV/Wuhan/HBCDC-HB-04/2019
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAGATGGAGAGCCTTGTCCCTGGTTTCAACGAGAAAACACACGTCCAACTCAGTTTGCCTGTTTTACAGGTTCGCGACGTGCTCGTACGTGGCTTTGGAGACTCCGTGGAGGAGGTCTTATCAGAGGCACGTCAACATCTTAAAGATGGCACTTGTGGCTTAGTAGAAGTTGAAAAAGGCGTTTTGCCTCAACTTGAACAGCCCTATGTGTTCATCAAACGTTCGGATGCTCGAACTGCACCTCATGGTCATGTTATGGTTGAGCTGGTAGCAGAACTCGAAGGCATTCAGTACGGTCGT1- G765C A2215C T4608A C4628G G4631C TTAAATTTGGAAGAAGCTGCTCGGTATATGAGATCTCTCAAAGTGCCAGCTACAGTTTCTGTTTCTTCACCTGATGCTGTTACAGCGTATAATGGTTA4634C T4732C AC4736TT T4747C C4763G T6006C T6820C A6837C T6976A T6978A T6980C G6986C T6988A C7006A T9316A GT9324AA G9648C G9653C A9826C T9831C T9861G T21656G A24325G G28597C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_434534
 2019-12-30 2020-04-28
 China hCoV-19/Wuhan/IVDC-HB-GX02/2019
 A24325G AAAAAAAAAAA29893-

MT291826 GWHABKZ01000001
 2019-12-30 2020-02-25
 China SARS-CoV-2/Wuhan_IME-WH01/human/2019/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTG1- T4946C C8782T T28144C AAAAAAAA29896-

MT291827 GWHACAT01000001
 2019-12-30 2020-03-02
 China SARS-CoV-2/Wuhan_IME-WH02/human/2019/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- AAAAAAAA29896-

MT291828 GWHACAU01000001
 2019-12-30 2020-03-02
 China SARS-CoV-2/Wuhan_IME-WH03/human/2019/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- A24325G AAAAAAAA29896-

MT291829 GWHACAV01000001
 2019-12-30 2020-03-02
 China SARS-CoV-2/Wuhan_IME-WH04/human/2019/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTG1- AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

MT291830 GWHACAW01000001
 2019-12-30 2020-03-02
 China SARS-CoV-2/Wuhan_IME-WH05/human/2019/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTG1- AAAAAAAA29896-

NMDC60013002-06
 2019-12-30 2020-01-28
 China BetaCoV/Wuhan/WH19008/2019 
 A24325G AAAAAAAAAAAA29892-

NMDC60013002-08
 2019-12-30 2020-01-28
 China BetaCoV/Wuhan/WH19001/2019
 AAAAAAAAAAAA29892-

NMDC60013002-10
 2019-12-30 2020-01-28
 China BetaCoV/Wuhan/WH19005/2019
 G20670A G20679A AAAAAAAAAAAA29892-

EPI_ISL_402120 NMDC60013085-01
 2020-01-01 2020-01-11
 China BetaCoV/Wuhan/IVDC-HB-04/2020
 C27493T C28253T AAAAAAA29897-

EPI_ISL_403928 GWHABKJ00000001 MT019533
 2020-01-01 2020-01-21
 China BetaCoV/Wuhan/IPBCAMS-WH-05/2020
 G7866T AAAAAAAAAAAAAAAAAAAA29884-

EPI_ISL_403928 GWHABKJ00000001 MT019533
 2020-01-01 2020-01-21
 China BetaCoV/Wuhan/IPBCAMS-WH-05/2020
 G7866T AAAAAAAAAAAAAAAAAAAA29884-

EPI_ISL_406800 CNA0007334 LR757996 NMDC60013002-03
 2020-01-01 2020-01-30
 China WH03
 ATTAAAGGTTTATACCTTCC1- AAAAAAAAAAAAAAA29889-

EPI_ISL_406800 CNA0007334 LR757996 NMDC60013002-03
 2020-01-01 2020-01-30
 China WH03
 ATTAAAGGTTTATACCTTCC1- AAAAAAAAAAAAAAA29889-

EPI_ISL_406800 CNA0007334 LR757996 NMDC60013002-03
 2020-01-01 2020-01-30
 China WH03
 ATTAAAGGTTTATACCTTCC1- AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_408514 NMDC60013073-01
 2020-01-01 2020-02-09
 China Wuhan/IVDC-HB-envF13-20/2020
 C15T C48A AAAAAAAAAAAA29892-

EPI_ISL_408515 NMDC60013074-01
 2020-01-01 2020-02-09
 China Wuhan/IVDC-HB-envF13-21/2020
 C48A A12350C A29019T AAAAAAAAAAAA29892-

NMDC60013002-09
 2020-01-01 2020-01-28
 China BetaCoV/Wuhan/WH19004/2020
 C27493T C28253T AAAAAAA29897-

EPI_ISL_406716 MN988668
 2020-01-02 2020-01-23
 China 2019-nCoV WHU01
 A1- AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_406717 MN988669
 2020-01-02 2020-01-23
 China 2019-nCoV WHU02
 A1- AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_514752 MT034054
 2020-01-03 2020-02-09
 China SARS-CoV-2/human/CHN/Beijing-01/2020
 ATTAAAGGTTT1- T13270C -A29859TCCG GAA29864TCC CAA29870TTT A29876C A29878GCCTCTTCCTC A29880T AAAAAAAAAAAAAAAAAAAAAA29882CT

EPI_ISL_529972
 2020-01-04 2020-09-10
 Spain hCoV-19/Spain/MD-H12-37/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_406801 CNA0007335 LR757995 NMDC60013002-04
 2020-01-05 2020-01-30
 China WH04
 ATTAAAGGTTTATAC1- C16T C8782T T28144C AAAAAAAAAAAAAAAA29888-

EPI_ISL_406801 CNA0007335 LR757995 NMDC60013002-04
 2020-01-05 2020-01-30
 China WH04
 ATTAAAGGTTTATAC1- C16T C8782T T28144C AAAAAAAAAAAAAAAA29888-

EPI_ISL_406801 CNA0007335 LR757995 NMDC60013002-04
 2020-01-05 2020-01-30
 China WH04
 ATTAAAGGTTTATAC1- C16T C8782T T28144C C29854T T29856A TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_434692
 2020-01-05 2020-05-01
 Thailand hCoV-19/Thailand/NIH-15/2020
 ATTAAAGGTTT1- TATACATGTCTCTGGGACCAATGG21763- CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_529973
 2020-01-05 2020-09-10
 Spain hCoV-19/Spain/MD-H12-38/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G C25480T C27005T G29734C ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_529974
 2020-01-06 2020-09-10
 Spain hCoV-19/Spain/MD-H12-39/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T AAC1966- C3037T C4002T A6248C C6813T C14408T A20268G A23403G G26834T G28230T ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_529975
 2020-01-07 2020-09-10
 Spain hCoV-19/Spain/MD-H12-40/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2890C C3037T C14408T A20268G A23403G G29734C G29759T ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

NMDC60013002-07
 2020-01-07 2020-01-28
 China BetaCoV/Wuhan/YS8011/2020 
 A29869- AAAAAAAAAAAA29892-

EPI_ISL_403962
 2020-01-08 2020-01-17
 Thailand hCoV-19/Thailand/61/2020
 ATTAAAGGTTT1- AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_411957 MT093631
 2020-01-08 2020-02-21
 China SARS-CoV-2/human/CHN/WH-09/2020
 ATTAAAGGTTTAT1- C186T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_412459 NMDC60013089-01
 2020-01-08 2020-02-26
 China BetaCoV/Jingzhou/HBCDC-HB-01/2020
 ATTAAAGGTTT1- C18828T C26370T C27944T C28093T G28183A AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_437623 MT447155
 2020-01-08 2020-05-01
 Thailand SARS-CoV-2/human/THA/SI200040-NT/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_529976
 2020-01-08 2020-09-10
 Spain hCoV-19/Spain/MD-H12-41/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G G29734C ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_529977
 2020-01-09 2020-09-10
 Spain hCoV-19/Spain/MD-H12-42/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10747T C14408T A20268G A23403G G29734C ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_406030 MN938384
 2020-01-10 2020-01-14
 China 2019-nCoV_HKU-SZ-002a_2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C8782T T28144C C29095T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_450500 GWHACDE01000001 MT259226
 2020-01-10 2020-03-26
 China SARS-CoV-2/Wuhan_OS52/human/2020/CHN
 ATTAAAGGTTTATA1- T565C C17825T T27384C G29573A G29861A G29868C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_529978
 2020-01-10 2020-09-10
 Spain hCoV-19/Spain/MD-H12-43/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9474T C14408T A20268G A23403G C29218T G29734C ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_405839 MN975262
 2020-01-11 2020-01-21
 China 2019-nCoV_HKU-SZ-005b_2020
 C8782T C9561T T15607C T28144C C29095T AAAAAAAAAAAA29892-

EPI_ISL_408486 NMDC60013081-01
 2020-01-11 2020-02-09
 China Jiangxi/IVDC-JX-002/2020
 G8274A AAAAAAAAAAAA29892-

EPI_ISL_421252
 2020-01-11 2020-04-07
 China hCoV-19/Pingxiang/JX5/2020
 ATTAAAGGTTTATACCTTCCCAGG1- G8274A AAAAAAAAAAAA29892-

EPI_ISL_403963
 2020-01-13 2020-01-17
 Thailand hCoV-19/Thailand/74/2020
 ATTAAAGGTTT1- AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_406592
 2020-01-13 2020-01-29
 China hCoV-19/Shenzhen/SZTH-001/2020
 C1648T T2169C A3801C A4644G G4656C GT4728TA T4739C T5464C A6308G C6786G T6834G A6838G T8091A T8455C T12597A T15636A C19269T T20315A G24947C A25347G A26108T A26141T G26755C A26759T T28144C C29095T AAAAAAAAAAAA29892-

EPI_ISL_406593
 2020-01-13 2020-01-29
 China hCoV-19/Shenzhen/SZTH-002/2020
 C8782T T28144C C29095T AAAAAAAAAAAA29892-

EPI_ISL_410301 MT072688
 2020-01-13 2020-02-14
 Nepal SARS-CoV-2/human/NPL/61-TW/2020
 ATTAAAGGTTTATAC1- C24034T AGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29827-

EPI_ISL_447909
 2020-01-13 2020-05-19
 Thailand hCoV-19/Thailand/Nonthaburi_59/2020
 AAAAAAAAAAAA29892-

EPI_ISL_529979
 2020-01-13 2020-09-10
 Spain hCoV-19/Spain/MD-H12-46/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- GGTCTT1598- C7967T C8782T C16694T C26088T T28144C ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_403932 NMDC60013005-01
 2020-01-14 2020-01-22
 China BetaCoV/Guangdong/20SF012/2020
 ATTAAAGGTTT1- C8782T T28144C C29095T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_529980
 2020-01-14 2020-09-10
 Spain hCoV-19/Spain/MD-H12-47/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G C27476T G29734C ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_403933 NMDC60013006-01
 2020-01-15 2020-01-22
 China BetaCoV/Guangdong/20SF013/2020
 ATTAAAGGTTT1- C8782T T28144C C29095T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_403934 NMDC60013007-01
 2020-01-15 2020-01-22
 China BetaCoV/Guangdong/20SF014/2020
 ATTAAAGGTTT1- T23569C CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_403935 NMDC60013008-01
 2020-01-15 2020-01-22
 China BetaCoV/Guangdong/20SF025/2020
 ATTAAAGGTTT1- C8782T T28144C C29095T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_408484 NMDC60013079-01
 2020-01-15 2020-02-09
 China Sichuan/IVDC-SC-001/2020
 C8782T T19190A C24034T T26729C G28077C T28144C AAAAAAAAAAAA29892-

EPI_ISL_447910
 2020-01-15 2020-05-19
 Thailand hCoV-19/Thailand/Nonthaburi_68/2020
 AAAAAAAAAAAA29892-

EPI_ISL_529981
 2020-01-15 2020-09-10
 Spain hCoV-19/Spain/MD-H12-48/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G15438T A20268G A23403G C26447T ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_404227 NMDC60013099-01
 2020-01-16 2020-01-21
 China BetaCoV/Zhejiang/WZ-01/2020
 ATTAAAGGTTTATACCTTC1- A31G C583T TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_406594
 2020-01-16 2020-01-29
 China hCoV-19/Shenzhen/SZTH-003/2020
 A1CCAGAAGAA C27577T C28854T AAAAAAAAAAAA29892-

EPI_ISL_406595
 2020-01-16 2020-01-29
 China hCoV-19/Shenzhen/SZTH-004/2020
 A1CCAGAAGAA G709A T6846C A11707G A19959C A22622G G22652T T23569C T25645C C28716T AAAAAAAAAAAA29892-

EPI_ISL_434693
 2020-01-16 2020-05-01
 Thailand hCoV-19/Thailand/NIH-59/2020
 ATTAAAG1- C13035Y T26258K CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_529982
 2020-01-16 2020-09-10
 Spain hCoV-19/Spain/MD-H12-49/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G G29734C ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_403936 NMDC60013010-01
 2020-01-17 2020-01-22
 China BetaCoV/Guangdong/20SF028/2020
 ATTAAAGGTTT1- C21707T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_404228 NMDC60013100-01
 2020-01-17 2020-01-21
 China BetaCoV/Zhejiang/WZ-02/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- AAAAAAAAAAAAAAAAAA29886-

EPI_ISL_408480 NMDC60013075-01
 2020-01-17 2020-02-09
 China Yunnan/IVDC-YN-003/2020
 C8782T G11083T T28144C AAAAAAAAAAAA29892-

EPI_ISL_412978 NMDC60013093-01
 2020-01-17 2020-03-02
 China BetaCoV/Wuhan/HBCDC-HB-02/2020
 ATTAAAGGTTTAT1- C8782T C12141A C23816T T28144C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_529983
 2020-01-17 2020-09-10
 Spain hCoV-19/Spain/MD-H12-50/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T9477A C14805T A22151G G25979T T28144C C28657T C28863T ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_539333
 2020-01-17 2020-09-16
 China hCoV-19/Hunan/HN-CIDC-P2/2020
 T25525A

MT049951
 2020-01-17 2020-02-09
 China SARS-CoV-2/human/CHN/Yunnan-01/2020
 C75A C8782T G11083C T21644A T28144C

MW011762
 2020-01-17 2020-09-16
 China SARS-CoV-2/human/CHN/P2-SARS-CoV-2/2020
 T25525A

EPI_ISL_403937
 2020-01-18 2020-01-22
 China hCoV-19/Guangdong/20SF040/2020
 ATTAAAGGTTT1- C21707T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_408481 NMDC60013076-01
 2020-01-18 2020-02-09
 China Chongqing/IVDC-CQ-001/2020
 G11083T AAAAAAAAAAAA29892-

EPI_ISL_408485 NMDC60013080-01
 2020-01-18 2020-02-09
 China BetaCoV/Beijing/IVDC-BJ-005/2020
 A4- C8782T C17002T C24034T GTTTT24140CAAAA T24471C T25652A T26729C G26834T G28077C T28144C AAAAAAAAAAAA29892-

EPI_ISL_412979 NMDC60013094-01
 2020-01-18 2020-03-02
 China BetaCoV/Wuhan/HBCDC-HB-03/2020
 ATTAAAGGTTT1- C8782T T28144C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_412980 NMDC60013095-01
 2020-01-18 2020-03-02
 China BetaCoV/Wuhan/HBCDC-HB-04/2020
 ATTAAAGGTTTATA1- C8782T T18996C C24370T T28144C T29029C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_412981 NMDC60013096-01
 2020-01-18 2020-03-02
 China BetaCoV/Wuhan/HBCDC-HB-05/2020
 ATTAAAGGTTTATACC1- G1397A A6528R G11083T T11709A T28688C G29742T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_529984
 2020-01-18 2020-09-10
 Spain hCoV-19/Spain/MD-H12-52/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6968T C14408T A20268G A23403G ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_404895 MN985325
 2020-01-19 2020-01-24
 United States SARS-CoV-2/human/USA/USA-WA1/2020
 C8782T C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_407313
 2020-01-19 2020-02-05
 China hCoV-19/Hangzhou/HZCDC0001/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_408482 NMDC60013077-01
 2020-01-19 2020-02-09
 China BetaCoV/Shandong/IVDC-SD-001/2020
 G1397A C7299T C10789T G11083T C27612G T28688C G29742T AAAAAAAAAAAA29892-

EPI_ISL_408488 NMDC60013082-01
 2020-01-19 2020-02-09
 China Jiangsu/IVDC-JS-001/2020
 T54- T58A AAAAAAAAAAAA29892-

EPI_ISL_529985
 2020-01-19 2020-09-10
 Spain hCoV-19/Spain/MD-H12-53/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

MT233526
 2020-01-19 2020-03-23
 United States SARS-CoV-2/human/USA/USA-WA1/2020
 ATTAAAGGTTTATACCTT1- C8782T C18060T T28144C ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

MT246667
 2020-01-19 2020-03-25
 United States SARS-CoV-2/human/USA/USA-WA1/2020
 ATTA1- C8782T C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871G

MT952134
 2020-01-19 2020-09-02
 United States SARS-CoV-2/human/USA/WA-CDC-WA1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C8782T C18060T T28144C TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_406970 GWHABKS00000001 MT039873
 2020-01-20 2020-02-03
 China SARS-CoV-2/human/Hangzhou/HZ-1/2020
 ATT1- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421235
 2020-01-20 2020-04-07
 China hCoV-19/Hangzhou/HZCDC0013/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G11083T A21282G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_421236
 2020-01-20 2020-04-07
 China hCoV-19/Hangzhou/HZCDC0012/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G11083T A21282G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_428449 NMDC60013112-01
 2020-01-20 2020-04-21
 China hCoV-19/Guangdong/20SF123/2020
 C8782T C18060T T28144C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_479799
 2020-01-20 2020-07-01
 Japan hCoV-19/Japan/PG-0015/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C11752T C19170A TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_479800
 2020-01-20 2020-07-01
 Japan hCoV-19/Japan/PG-0016/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C11752T C19170A A29433G TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_529986
 2020-01-20 2020-09-10
 Spain hCoV-19/Spain/MD-H12-54/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1063T C3037T C14408T A20268G A23403G C25427T G29734C ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

MT226610
 2020-01-20 2020-03-20
 China SARS-CoV-2/human/CHN/KMS1/2020
 G4288T A4307C A7479G C8782T G11083T G11207C T11233G G12041C G12160C G12202C G12208T G12355C G12378A G12464T G12467T G12491T G12514C G12572T G12578T G12582T G12600A G12660C G12685C G12773T G12793T G20980C T21784A T28144C AAAA29900-

EPI_ISL_404253 MN988713
 2020-01-21 2020-01-25
 United States 2019-nCoV/USA-IL1/2020
 T490W C3177Y C8782Y C24034Y T26729Y G28077S T28144Y C28854Y AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_408478
 2020-01-21 2020-02-09
 China hCoV-19/Chongqing/YC01/2020
 C1342T C8782T C18060T T28144C C29200T AAAAAAAAAAAA29892-

EPI_ISL_411060
 2020-01-21 2020-02-19
 China hCoV-19/Fujian/8/2020
 C8782T C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_416389
 2020-01-21 2020-03-20
 China hCoV-19/Shanghai/SH0093/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- G27754T G28851T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_417064
 2020-01-21 2020-03-24
 China hCoV-19/Hong Kong/VB20017970-2/2020
 ATTAAAGGTTTATACCTTCCCAGG1- T28861C TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_418441 MT253701
 2020-01-21 2020-03-27
 China SARS-CoV-2/human/CHN/HZ-48/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

EPI_ISL_418442 MT253702
 2020-01-21 2020-03-27
 China SARS-CoV-2/human/CHN/HZ-49/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

EPI_ISL_418504 MT253708
 2020-01-21 2020-03-27
 China SARS-CoV-2/human/CHN/HZ-79/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

EPI_ISL_418506 MT253709
 2020-01-21 2020-03-27
 China SARS-CoV-2/human/CHN/HZ-90/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

EPI_ISL_418507 MT253710
 2020-01-21 2020-03-27
 China SARS-CoV-2/human/CHN/HZ-91/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

EPI_ISL_421227
 2020-01-21 2020-04-07
 China hCoV-19/Hangzhou/HZCDC0091L/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_421229
 2020-01-21 2020-04-07
 China hCoV-19/Hangzhou/HZCDC0090L/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_421231
 2020-01-21 2020-04-07
 China hCoV-19/Hangzhou/HZCDC0049L/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_421232
 2020-01-21 2020-04-07
 China hCoV-19/Hangzhou/HZCDC0048L/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_421233
 2020-01-21 2020-04-07
 China hCoV-19/Hangzhou/HZCDC0048/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_421234
 2020-01-21 2020-04-07
 China hCoV-19/Hangzhou/HZCDC0025/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C6187T G26144T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_421243
 2020-01-21 2020-04-07
 China hCoV-19/Nanchang/JX14/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C8782T A8924G A8926T T28144C AAAAAAAAAAAA29892-

EPI_ISL_428443 NMDC60013106-01
 2020-01-21 2020-04-21
 China hCoV-19/Guangdong/20SF115/2020
 C8782T C24034T C24099T T26729C G28077C T28144C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_428447 NMDC60013110-01
 2020-01-21 2020-04-21
 China hCoV-19/Guangdong/20SF117/2020
 C8782T C15480T T28144C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_529987
 2020-01-21 2020-09-10
 Spain hCoV-19/Spain/MD-H12-55/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G C27476T G29734C ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_406036 MN994468
 2020-01-22 2020-01-27
 United States 2019-nCoV/USA-CA2/2020
 C17000T G26144T AAAAAAAAAAAAAAAAAAAA29884-

EPI_ISL_406223 MN997409
 2020-01-22 2020-01-28
 United States 2019-nCoV/USA-AZ1/2020
 C8782T G11083T T28144C C29095T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_406531 NMDC60013011-01
 2020-01-22 2020-01-29
 China BetaCoV/Guangdong/20SF174/2020
 ATTAAAGGTTTATACCTTCCCAG1- C21707T TATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29832-

EPI_ISL_406533 NMDC60013012-01
 2020-01-22 2020-01-29
 China BetaCoV/Guangzhou/20SF206/2020
 ATTAAAGGTTTATACCTTCCCAG1- C15324T C29303T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_406534 NMDC60013013-01
 2020-01-22 2020-01-29
 China BetaCoV/Foshan/20SF207/2020
 ATTAAAGGTTTATACCTTCCCAG1- C28291T C28854T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_406535 NMDC60013014-01
 2020-01-22 2020-01-29
 China BetaCoV/Foshan/20SF210/2020
 ATTAAAGGTTTATACCTTCCCAG1- C17373T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_406536 NMDC60013015-01
 2020-01-22 2020-01-29
 China BetaCoV/Foshan/20SF211/2020
 ATTAAAGGTTTATACCTTCCCAG1- C17373T AGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29827-

EPI_ISL_408976
 2020-01-22 2020-02-11
 Australia hCoV-19/Australia/NSW02/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8327T G29449T AGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCT29735- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_411066
 2020-01-22 2020-02-19
 China hCoV-19/Fujian/13/2020
 C17373T G29755A AAAAAAAAAAAA29892-

EPI_ISL_412028 MT644268
 2020-01-22 2020-02-24
 China SARS-CoV-2/human/HKG/VM20001061/2020
 ATTAAAGGTTTAT1- C1663T C8782T G22661T C24034Y T26729C G28077C T28144C G29862T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_415711
 2020-01-22 2020-03-19
 China hCoV-19/Hangzhou/ZJU-05/2020
 -T2AGAGTGCTTAG GG7AT -10TTAATCAGCACGAAGTTCTACTTGCACCA

EPI_ISL_417443
 2020-01-22 2020-03-26
 China hCoV-19/Hong Kong/XM-PII-S4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C1663T C4455T C8782T C21636T G22661T CTAATTCTCCTCGGCGGGCACGTAGTGTAG23595- C24034T G28077C T28144C C29095T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_418267 MT192773
 2020-01-22 2020-03-14
 Vietnam SARS-CoV-2/human/VNM/nCoV-19-02S/2020
 A26- C28T C10232T AAAAAAAAAAAA29892-

EPI_ISL_418269 MT192772
 2020-01-22 2020-03-14
 Vietnam SARS-CoV-2/human/VNM/nCoV-19-01S/2020
 C10232T AAAAAAAAAAAA29892-

EPI_ISL_418502 MT253705
 2020-01-22 2020-03-27
 China SARS-CoV-2/human/CHN/HZ-60/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

EPI_ISL_418503 MT253706
 2020-01-22 2020-03-27
 China SARS-CoV-2/human/CHN/HZ-62/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C16247Y CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

EPI_ISL_421225
 2020-01-22 2020-04-07
 China hCoV-19/Hangzhou/HZCDC0135/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_421226
 2020-01-22 2020-04-07
 China hCoV-19/Hangzhou/HZCDC0119/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_421237
 2020-01-22 2020-04-07
 China hCoV-19/Jiujiang/JX22/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C8782T T28144C AAAAAAAAAAAA29892-

EPI_ISL_421244
 2020-01-22 2020-04-07
 China hCoV-19/Shangrao/JX29/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C8782T T28144C AAAAAAAAAAAA29892-

EPI_ISL_434571 MT230904
 2020-01-22 2020-03-22
 China SARS-CoV-2/human/HKG/HKU-001a/2020
 C1663T C8782T G22661T C24034T T26729C G28077C T28144C AAAAAAAAAAAA29892-

EPI_ISL_434694
 2020-01-22 2020-05-01
 Thailand hCoV-19/Thailand/NIH-162/2020
 ATTAAAGGTTT1- C18885T G19846R CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_449476 MT079843
 2020-01-22 2020-02-18
 China SARS-CoV-2/human/CHN/WHUHnCoV001/2020
 -2ACTGAG A1G AA4GG G7C T10G A12G ACCT14TTTC -20GTTGAAA C2536T C8782T T8886C T28144C

EPI_ISL_449477 MT079844
 2020-01-22 2020-02-18
 China SARS-CoV-2/human/CHN/WHUHnCoV002/2020
 ATT1TCG -7GTTGGTT A12G AC14TA T17C CCC19GGG G23A TA25GT C28T C2536T C8782T T8886C T28144C

EPI_ISL_449478 MT079845
 2020-01-22 2020-02-18
 China SARS-CoV-2/human/CHN/WHUHnCoV003/2020
 A1CCTACAAGAGA TA3CG -7AGTTGGTT C8782T T18996C C24370T T28144C T29029C -CC29835GTGAGATTAAAAGTTAATA G29841C GA29843AC T29847G AA29849GC GC29853TG TC29856AG G29861C G29868TCATTCTGC A29873G AA29875GT A29878G AA29880CT A29883T A29885T -29887TCGT AAA29890CGG AAA29897GCG -29904CGTTTA

EPI_ISL_449479 MT079846
 2020-01-22 2020-02-18
 China SARS-CoV-2/human/CHN/WHUHnCoV004/2020
 ATT1-CG -7GTTGGTT A12G AC14TA T17C CCC19GGG G23A TA25GT C28T C2536T C8782T T8886C T28144C -CC29835GTGAGATTAAAGTTAATA G29841C GA29843AC T29847G AA29849GC GC29853TG TC29856AG G29861C G29868TCATTCTGC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873G

EPI_ISL_449480 MT079847
 2020-01-22 2020-02-18
 China SARS-CoV-2/human/CHN/WHUHnCoV005/2020
 A1G AAA4- C8782T C10626T T28144C CCCC29835- A29839G T29842A -29847AAAG TAG29851CTA T29855A -29859ACTTGTGC G29861T AGAA29863TAGT GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_449481 MT079848
 2020-01-22 2020-02-18
 China SARS-CoV-2/human/CHN/WHUHnCoV006/2020
 ATTAAAGGTT1- A12G ACC14GTT -20TCGTTGAAA C8782T T28144C -CC29835GTGAGATTAAAGTTAATA G29841C GA29843AC T29847G AA29849GC GC29853TG TC29856AG G29861C ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_449482 MT079849
 2020-01-22 2020-02-18
 China SARS-CoV-2/human/CHN/WHUHnCoV007/2020
 A1G AAA4GGTT A12G AC14TA T17C CCC19GGG G23A TA25GT C28T C8782T G16325C T28144C

EPI_ISL_449483 MT079850
 2020-01-22 2020-02-18
 China SARS-CoV-2/human/CHN/WHUHnCoV008/2020
 A1GGA TAA3CGG -7AAGTTGGTT C2536T C8782T T8886C T28144C TAG29826GGT CCCC29835- A29839G T29842A -29847AAAG TAG29851CTA T29855A -29859ACTTGTGC G29861T AGAA29863TAGT GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_449484 MT079851
 2020-01-22 2020-02-18
 China SARS-CoV-2/human/CHN/WHUHnCoV011/2020
 C8782T T28144C -29904CCGAAAGCTTGTGTTACATTGTATGCTTTAGTGGCAGTACGTTTTTTGCCGAGGCTTCTTAGAAGCCTCAGCAGCAGATTTCTTAGTGACAGTTTGGCCTTGTTGTTGTTGGCCT

EPI_ISL_449485 MT079852
 2020-01-22 2020-02-18
 China SARS-CoV-2/human/CHN/WHUHnCoV012/2020
 -2AACCTGTAAAACAGGCAAACTGAG A1G AA4GG G7C T10G A12G ACCT14TTTC -20GTTGAAA T25G AC27CA AA30GG CAA33TCT -A38ATCTTC C8782T T28144C CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_449486 MT079853
 2020-01-22 2020-02-18
 China SARS-CoV-2/human/CHN/WHUHnCoV020/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCAT1- C2536T C8782T T8886C T28144C A29876G A29879G A29882GGCTGATGAAACTCAAGCCTTACCGC A29884G A29886G A29888C A29890G A29893G A29897C AA29899GC -29904CTGTGACTCTTCTTCCTGCTGCAGATTTGGATGATTTCTCCAAACAATTGCAACAATCCATG

EPI_ISL_449487 MT079854
 2020-01-22 2020-02-18
 China SARS-CoV-2/human/CHN/WHUHnCoV021/2020
 A1G AA4GG G7C T10G A12G ACCT14TTTC -20GTTGAAA TA25-G A31GGCTCTCC C17249T C17894T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_450444 MT039874
 2020-01-22 2020-02-09
 China SARS-CoV-2/human/CHN/IME-HZ01/2020
 ATTAAAGGTTTA1- AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_451323
 2020-01-22 2020-05-24
 China hCoV-19/China/SC-MY-057/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- C683T T13243C

EPI_ISL_455683 MT407649
 2020-01-22 2020-04-27
 China SARS-CoV-2/human/CHN/CN1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATC1- C8782T C15480T T28144C AAAAAAAAAAAAAAAAAAAAAA29882-

EPI_ISL_455684 MT407650
 2020-01-22 2020-04-27
 China SARS-CoV-2/human/CHN/CN2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATC1- C8782T C13170T C15480T T28144C CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_455685 MT407651
 2020-01-22 2020-04-27
 China SARS-CoV-2/human/CHN/CN5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATC1- G6337T C8782T C15480T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_529988
 2020-01-22 2020-09-10
 Spain hCoV-19/Spain/MD-H12-56/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5622T A9134C C9474T C14408T A20268G A23403G C26534T C29218T G29734C ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

MT547814
 2020-01-22 2020-06-01
 United States SARS-CoV-2/human/HKG/VM20001061/2020
 ATTAAAGGTTTATA1- C1663T C8782T C12919T C21636T G22661T G23607A C24034T C24566G T26729C TTTTAAAGTTTCCATTTGGAATCTTGA27264- G28077C T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_406031
 2020-01-23 2020-01-27
 Taiwan hCoV-19/Taiwan/2/2020
 ATT1- G16188T A25964G G26144T A29877T AAAAAAAAAAAAAAAAAAAAAA29882-

EPI_ISL_406034 MN994467
 2020-01-23 2020-01-27
 United States 2019-nCoV/USA-CA1/2020
 G1548A C8782T C24034T T26729C G28077C T28144C A28792T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_406538 NMDC60013016-01
 2020-01-23 2020-01-29
 China BetaCoV/Guangdong/20SF201/2020
 ATTAAAGGTTTATACCTTCCCAG1- AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_406596
 2020-01-23 2020-01-29
 France hCoV-19/France/IDF0372/2020
 ATTAAAGGTTT1- G22661T G26144T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_406597
 2020-01-23 2020-01-29
 France hCoV-19/France/IDF0373/2020
 ATTAAAGGTTTATACCTTC1- G22661T G26144T TGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29829-

EPI_ISL_406973
 2020-01-23 2020-02-03
 Singapore hCoV-19/Singapore/1/2020
 A25060G TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_408479
 2020-01-23 2020-02-09
 China hCoV-19/Chongqing/ZX01/2020
 AAAAAAAAAAAA29892-

EPI_ISL_410532
 2020-01-23 2020-02-17
 Japan hCoV-19/Japan/OS-20-07-1/2020
 ATT1- AAAAAAAAAAAAAAAAAAAAAA29882-

EPI_ISL_410720
 2020-01-23 2020-02-18
 France hCoV-19/France/IDF0372-isl/2020
 G22661T G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_411950
 2020-01-23 2020-02-22
 China hCoV-19/Jiangsu/JS01/2020
 C3768T C25919T C29732T AAAAAAAAAAAA29892-

EPI_ISL_413015
 2020-01-23 2020-03-02
 Canada hCoV-19/Canada/ON_VIDO-01/2020
 ATTAAAGGTTTA1- AAGTCATTT686- A5084G C26261T C28854T AA29902-

EPI_ISL_418508 MT253696
 2020-01-23 2020-03-27
 China SARS-CoV-2/human/CHN/HZ-162/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

EPI_ISL_418509 MT253697
 2020-01-23 2020-03-27
 China SARS-CoV-2/human/CHN/HZ-178/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

EPI_ISL_418510 MT253698
 2020-01-23 2020-03-27
 China SARS-CoV-2/human/CHN/HZ-185/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

EPI_ISL_421248
 2020-01-23 2020-04-07
 China hCoV-19/Nanchang/JX39/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C289T T2922C C8782T T28144C AAAAAAAAAAAA29892-

EPI_ISL_425177
 2020-01-23 2020-04-14
 Canada hCoV-19/Canada/ON_ON-VIDO-01-2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- A5084G C28854T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_431785
 2020-01-23 2020-04-29
 China hCoV-19/Fujian/3520022Y/2020
 ATTAAA1- A26- C1077T C8782T T28144C G28878A G29742A -29851T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_434563 MT114412
 2020-01-23 2020-02-24
 China SARS-CoV-2/human/HKG/HKU-902a/2020
 AT1- T28861C AAAAAAAAAAAA29892-

EPI_ISL_437612 MT447166
 2020-01-23 2020-05-01
 Thailand SARS-CoV-2/human/THA/SI203285-NT/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- A895G C2942T G4390T C8782T C9598T G20134T G24047A T28144C TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_437622 MT447156
 2020-01-23 2020-05-01
 Thailand SARS-CoV-2/human/THA/SI200383-NT/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- G26144T T27285C TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_450196
 2020-01-23 2020-05-20
 Thailand hCoV-19/Thailand/Bangkok_168/2020
 C2915A A14280G G15327T G17686T G25217T AAAAAAAAAAAA29892-

EPI_ISL_451390
 2020-01-23 2020-05-24
 China hCoV-19/China/SC-WCH4-288/2020
 A16824G C26753T T28144C

EPI_ISL_468726 MT622319
 2020-01-23 2020-06-16
 China SARS-CoV-2/human/CHN/Shanghai_CH-03/2020
 AT1- C8782T C18029T C18060T C25487T T28144C A29884G A29888G AAAAAAAAAAAA29892-

EPI_ISL_529989
 2020-01-23 2020-09-10
 Spain hCoV-19/Spain/MD-H12-57/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G16744A A20268G G21190A A23403G T26301G ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_407893
 2020-01-24 2020-02-06
 Australia hCoV-19/Australia/NSW01/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_408668 EPI_ISL_416427
 2020-01-24 2020-02-10
 Vietnam hCoV-19/Vietnam/VR03-38142/2020
 A26- C28T C8782T C24034T T26729C G28077C T28144C T29859C GAGAATGA29862- A29875G A29877C AAAAA29899-

EPI_ISL_411926
 2020-01-24 2020-02-21
 Taiwan hCoV-19/Taiwan/3/2020
 C8782T T28144C A29889G AAAAAAAAAAAA29892-

EPI_ISL_411952
 2020-01-24 2020-02-22
 China hCoV-19/Jiangsu/JS02/2020
 G3860A C7420T G13571T C21707T G26211T AAAAAAAAAAAA29892-

EPI_ISL_411953
 2020-01-24 2020-02-22
 China hCoV-19/Jiangsu/JS03/2020
 AAAAAAAAAAAA29892-

EPI_ISL_413485
 2020-01-24 2020-03-05
 China hCoV-19/Anhui/SZ005/2020
 ATT1- A4T C2189T T3086C A5094G C8782T G11083- C16049T G17122A T28144C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_414938
 2020-01-24 2020-03-16
 China hCoV-19/Shandong/LY005-2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- T3171C C8782T T28144C TAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAG29817- GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_416046
 2020-01-24 2020-03-20
 China hCoV-19/Hangzhou/ZJU-04/2020
 A1CCCCCCCTTTTCAAGCAGAAGACGGCATACGAGA TA3GG -G7TCTCGTGACTGGAGTTCAGACGTGTGCTCTTCCA T10C

EPI_ISL_416829
 2020-01-24 2020-03-23
 Malaysia hCoV-19/Malaysia/MKAK-CL-2020-5045/2020
 ATTAAAGGTTTA1- C398T C27131T G27147C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_416866
 2020-01-24 2020-03-23
 Malaysia hCoV-19/Malaysia/MKAK-CL-2020-5047/2020
 ATTAAAGGTT1- G27147C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416884
 2020-01-24 2020-03-23
 Malaysia hCoV-19/Malaysia/MKAK-CL-2020-5049/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGA1- -194ACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGA CTATACATGTCTCTGGGACCAATGGTA21762- G27147C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_417030
 2020-01-24 2020-03-24
 Australia hCoV-19/Australia/NSW04/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C2445T C8782T T20367C T28144C C29095T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_418511 MT253699
 2020-01-24 2020-03-27
 China SARS-CoV-2/human/CHN/HZ-477/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

EPI_ISL_422425 NMDC60013101-01
 2020-01-24 2020-04-10
 China hCoV-19/Zhejiang/HZ103/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A23403G C23575T TG29867- AAAAAAAAAAAAAAAAAAAAA29883G

EPI_ISL_424355 GWHACAX01000001 MT291831
 2020-01-24 2020-03-02
 China SARS-CoV-2/human/CHN/Beijing_IME-BJ01/2020
 ATTAA1- C8782T G11937A C16293T T28144C C29095T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_424355 GWHACAX01000001 MT291831
 2020-01-24 2020-03-02
 China SARS-CoV-2/human/CHN/Beijing_IME-BJ01/2020
 ATTAA1- C8782T G11937A C16293T T28144C C29095T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_428465 NMDC60013128-01
 2020-01-24 2020-04-21
 China hCoV-19/Guangdong/20SF616/2020
 G8179T G25630C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_430734
 2020-01-24 2020-04-27
 China hCoV-19/Beijing/BJ53/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C10604T A15647G A21137G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_430735
 2020-01-24 2020-04-27
 China hCoV-19/Beijing/BJ54/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C10604T A15647G A21137G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_434564 MT114413
 2020-01-24 2020-02-24
 China SARS-CoV-2/human/HKG/HKU-902b/2020
 T28861C AAAAAAAAAAAA29892-

EPI_ISL_434565 MT114414
 2020-01-24 2020-02-24
 China SARS-CoV-2/human/HKG/HKU-903a/2020
 G1397A G11083T T28688C G29742T AAAAAAAAAAAA29892-

EPI_ISL_447911
 2020-01-24 2020-05-19
 Thailand hCoV-19/Thailand/Nonthaburi_193/2020
 C2942T G4390T C8782T T28144C AAAAAAAAAAAA29892-

EPI_ISL_450408 MT365028
 2020-01-24 2020-04-17
 China SARS-CoV-2/human/HKG/HKU-905a/2020
 G1397A G11083T T28688C G29742T AAAAAAAAAAAA29892-

EPI_ISL_451345
 2020-01-24 2020-05-24
 China hCoV-19/China/SC-PHCC1-022/2020
 C241T C3037T A23403G

EPI_ISL_451360
 2020-01-24 2020-05-24
 China hCoV-19/China/SC-PHCC2-040/2020
 C8782T C21767T T28144C C29095T

EPI_ISL_451361
 2020-01-24 2020-05-24
 China hCoV-19/China/SC-PHCC2-041/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500-

EPI_ISL_451392
 2020-01-24 2020-05-24
 China hCoV-19/China/SC-WCH4-290/2020
 

EPI_ISL_495459
 2020-01-24 2020-07-23
 China hCoV-19/Lishui/LS003/2020
 ATTAAAGGTTT1- C3885A C12778T T13270C G29449T AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_529990
 2020-01-24 2020-09-10
 Spain hCoV-19/Spain/MD-H12-58/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A12130T C14408T A20268G A23403G C29546A ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_406844 MT007544
 2020-01-25 2020-01-31
 Australia SARS-CoV-2/human/AUS/VIC01/2020
 T19065C T22303G G26144T CGATCGAGTG29750-

EPI_ISL_407084 LC521925
 2020-01-25 2020-02-04
 Japan BetaCoV/Japan/AI/I-004/2020
 ATT1- GGAGACTCCGTGGAGGAGGTCTTA359- C1912T C18512T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_407193
 2020-01-25 2020-02-04
 South Korea hCoV-19/South Korea/KCDC03/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- T4402C G5062T C8782T T28144C TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_407214 MT020880
 2020-01-25 2020-02-04
 United States 2019-nCoV/USA-WA1-A12/2020
 C8782T C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_407215 MT020881
 2020-01-25 2020-02-04
 United States 2019-nCoV/USA-WA1-F6/2020
 C8782T C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_407987
 2020-01-25 2020-02-07
 Singapore hCoV-19/Singapore/2/2020
 A1- G27147C TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_408977
 2020-01-25 2020-02-11
 Australia hCoV-19/Australia/NSW03/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_410531
 2020-01-25 2020-02-17
 Japan hCoV-19/Japan/NA-20-05-1/2020
 ATT1- AAAAAAAAAAAAAAAAAAAAAA29882-

EPI_ISL_411915 MT192759
 2020-01-25 2020-03-13
 Taiwan SARS-CoV-2/human/TWN/CGMH-CGU-01/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- AAAAAAAAAAAAAA29890-

EPI_ISL_411915 MT192759
 2020-01-25 2020-03-13
 Taiwan SARS-CoV-2/human/TWN/CGMH-CGU-01/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- AAAAAAAAAAAAAA29890-

EPI_ISL_413014
 2020-01-25 2020-03-02
 Canada hCoV-19/Canada/ON_PHL2445/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- A5084G C28854T AAA29901-

EPI_ISL_413691 CNA0013890
 2020-01-25 2020-03-09
 China Weifang/WFCDC0001/2020
 ATTAAAGGT1- C8782T T28144C ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_414940
 2020-01-25 2020-03-16
 China hCoV-19/Shandong/LY007-2/2020
 ATTAAA1- T3171C C8782T T28144C TGTGATTTTAAT29840- G29853C T29855G TT29858CA GA29862TC A29865G T29867G A29869C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_415709
 2020-01-25 2020-03-19
 China hCoV-19/Hangzhou/ZJU-01/2020
 AT1CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTTTTCAAGCAGAAGACGGCATACGAGATCGAG A6T -8TGACTGGA T11C T13G -16GTGTGCT C21G GG23TC AAC26- G11083T G23607A G26144T

EPI_ISL_416044
 2020-01-25 2020-03-20
 China hCoV-19/Hangzhou/ZJU-03/2020
 AT1CCCCCCCCCCCCCCCCCCCCCCCCCCCTTTTCAAGCAGAAGACGGCATACGAGATAATGAGCGGTGAC AA4GG G8T T10CAGACGTGTGCTCTTCCGA A12C G16846T

EPI_ISL_416316
 2020-01-25 2020-03-20
 China hCoV-19/Shanghai/SH0002/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C8782T T28144C G28878A G29742A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416317
 2020-01-25 2020-03-20
 China hCoV-19/Shanghai/SH0003/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C37T C8782T T28144C G28878A G29742A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416411 MT450920
 2020-01-25 2020-03-20
 Australia SARS-CoV-2/human/AUS/VIC03/2020
 ATTA1- G26144T

EPI_ISL_417178
 2020-01-25 2020-03-24
 China hCoV-19/Hong Kong/HKPU6_2101/2020
 C745T C26198T

EPI_ISL_418327
 2020-01-25 2020-01-25
 Canada hCoV-19/Canada/ON_PHL4181/2020
 A1- A5084G C28854T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418512 MT253700
 2020-01-25 2020-03-27
 China SARS-CoV-2/human/CHN/HZ-481/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

EPI_ISL_418513 MT253703
 2020-01-25 2020-03-27
 China SARS-CoV-2/human/CHN/HZ-551/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

EPI_ISL_418514 MT253704
 2020-01-25 2020-03-27
 China SARS-CoV-2/human/CHN/HZ-576/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

EPI_ISL_418515 MT253707
 2020-01-25 2020-03-27
 China SARS-CoV-2/human/CHN/HZ-638/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

EPI_ISL_421242
 2020-01-25 2020-04-07
 China hCoV-19/Ganzhou/JX81/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C8782T T28144C AAAAAAAAAAAA29892-

EPI_ISL_421245
 2020-01-25 2020-04-07
 China hCoV-19/Nanchang/JX90/2020
 ATTAAAGGTTTATACCTTCCCAGG1- A8173T C8782T T16909A T20852A C21997A T25724C T28144C AAAAAAAAAAAA29892-

EPI_ISL_421249
 2020-01-25 2020-04-07
 China hCoV-19/Xinyu/JX122/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C8782T T28144C AAAAAAAAAAAA29892-

EPI_ISL_424356 GWHACAY01000001 MT291832
 2020-01-25 2020-03-02
 China SARS-CoV-2/human/CHN/Beijing_IME-BJ02/2020
 ATTAAAGG1- T4402C G5062T C8782T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_424356 GWHACAY01000001 MT291832
 2020-01-25 2020-03-02
 China SARS-CoV-2/human/CHN/Beijing_IME-BJ02/2020
 ATTAAAGG1- T4402C G5062T C8782T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428464 NMDC60013127-01
 2020-01-25 2020-04-21
 China hCoV-19/Guangdong/20SF602/2020
 G26144T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_429852
 2020-01-25 2020-04-24
 China hCoV-19/Lishui/LS111/2020
 ATTAAAGGTTT1- C3885A C12778T T13270C G29449T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871TT

EPI_ISL_437620 MT447158
 2020-01-25 2020-05-01
 Thailand SARS-CoV-2/human/THA/SI200468-NT/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C2942T G4390T C8782T T28144C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_437621 MT447157
 2020-01-25 2020-05-01
 Thailand SARS-CoV-2/human/THA/SI200433-NT/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_447912
 2020-01-25 2020-05-19
 Thailand hCoV-19/Thailand/Bangkok_237/2020
 C2942T G4390T C8782T T28144C AAAAAAAAAAAA29892-

EPI_ISL_447914
 2020-01-25 2020-05-19
 Thailand hCoV-19/Thailand/Phuket_247/2020
 AAAAAAAAAAAA29892-

EPI_ISL_450489 GWHACDJ01000001 MT259231
 2020-01-25 2020-03-26
 China SARS-CoV-2/Wuhan_YB012504/human/2020/CHN
 ATTAAAGGTTTATA1- C20692T G29868C AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_450504 GWHACDI01000001 MT259230
 2020-01-25 2020-03-26
 China SARS-CoV-2/Wuhan_YB012506/human/2020/CHN
 ATTAAAGGTTTATA1- C17373T G29868C AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_451382
 2020-01-25 2020-05-24
 China hCoV-19/China/SC-WCH-315/2020
 ATTAAAGGTTTATACCTTCCCAG1- C12896T C17373T C23191T

EPI_ISL_493149 GWHALPE01000001
 2020-01-25 2020-07-21
 China SARS-CoV-2/Wuhan_A137/human/2020/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C5869T ACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29695-

EPI_ISL_493150 GWHALPF01000001
 2020-01-25 2020-07-21
 China SARS-CoV-2/Wuhan_A142/human/2020/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- A1079C C5869T C18109A ACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29695-

EPI_ISL_493151 GWHALPG01000001
 2020-01-25 2020-07-21
 China SARS-CoV-2/Wuhan_A145/human/2020/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C5869T ACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29695-

EPI_ISL_493152 GWHALPH01000001
 2020-01-25 2020-07-21
 China SARS-CoV-2/Wuhan_A148/human/2020/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- A1079C C5869T C24130A ACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29695-

EPI_ISL_493153 GWHALPI01000001
 2020-01-25 2020-07-21
 China SARS-CoV-2/Wuhan_A152/human/2020/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- A1079C C5869T ACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29695-

EPI_ISL_493154 GWHALPJ01000001
 2020-01-25 2020-07-21
 China SARS-CoV-2/Wuhan_A153/human/2020/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- ACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29695-

EPI_ISL_493155 GWHALPK01000001
 2020-01-25 2020-07-21
 China SARS-CoV-2/Wuhan_A160/human/2020/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- A1079C C24130A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_493156 GWHALPL01000001
 2020-01-25 2020-07-21
 China SARS-CoV-2/Wuhan_A163/human/2020/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- A1079C C24130A ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_493157 GWHALPM01000001
 2020-01-25 2020-07-21
 China SARS-CoV-2/Wuhan_A164/human/2020/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_493158 GWHALPN01000001
 2020-01-25 2020-07-21
 China SARS-CoV-2/Wuhan_A167/human/2020/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C28115T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_493159 GWHALPO01000001
 2020-01-25 2020-07-21
 China SARS-CoV-2/Wuhan_A168/human/2020/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- A1079C T6556C A13625G ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_493161 GWHALPP01000001
 2020-01-25 2020-07-21
 China SARS-CoV-2/Wuhan_A170/human/2020/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C2462T G18380A ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_493163 GWHALPQ01000001
 2020-01-25 2020-07-21
 China SARS-CoV-2/Wuhan_A174/human/2020/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C19386T G22081A ACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29695-

EPI_ISL_493164 GWHALPR01000001
 2020-01-25 2020-07-21
 China SARS-CoV-2/Wuhan_A182/human/2020/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C28253T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_493165 GWHALPS01000001
 2020-01-25 2020-07-21
 China SARS-CoV-2/Wuhan_A191/human/2020/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- G2888T C8782T G18816T A26565C T28144C ACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29695-

EPI_ISL_493166 GWHALPT01000001
 2020-01-25 2020-07-21
 China SARS-CoV-2/Wuhan_A192/human/2020/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- G7615A A13175G ACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29695-

EPI_ISL_497860
 2020-01-25 2020-07-25
 China hCoV-19/Hong Kong/HKU-200723-093/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C745T C26198T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509505
 2020-01-25 2020-08-05
 Australia hCoV-19/Australia/NSW2153/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_529991
 2020-01-25 2020-09-10
 Spain hCoV-19/Spain/MD-H12-59/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G C25418A C26873T G27147T C28854T ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_539334
 2020-01-25 2020-09-16
 China hCoV-19/Hunan/HN-CIDC-P5/2020
 T25525A

GWHAORD01000001
 2020-01-25 2020-09-11
 China SARS-CoV-2/human/CHN/Beijing-P2.1/2020
 

MW011763
 2020-01-25 2020-09-16
 China SARS-CoV-2/human/CHN/P5-SARS-CoV-2/2020
 T25525A

CNA0013697
 2020-01-26 2020-03-09
 China Guangzhou/GZ8H0001/2020
 ATTAAAGGTTT1- C8782T C12534T C13072T T28144C ATGA29866GCTG AA29871CT A29874T AAA29876TGG A29881G AAAAA29883GCCCT AAAAA29890TGTGT AA29899TT A29903TTTTAGTAGTGCT

CNA0013698
 2020-01-26 2020-03-09
 China Guangzhou/GZ8H0002/2020
 ATTAAAGGTTTATA1- C16A C8782T C12534T C13072T T28144C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

CNA0013702
 2020-01-26 2020-03-09
 China Guangzhou/GZ8H0007/2020
 ATTAAAGGTTTAT1- C8782T C12534T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871G

CNA0013708
 2020-01-26 2020-03-09
 China Guangzhou/GZ8H0016/2020
 ATTAAAGGTTTAT1- C15324T C17550T C29303T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875C

EPI_ISL_413518 MT135041
 2020-01-26 2020-03-02
 China SARS-CoV-2/human/CHN/105/2020
 T4402C G5062T C8782T T28144C

EPI_ISL_413692 CNA0013889
 2020-01-26 2020-03-09
 China Weifang/WFCDC0002/2020
 ATTAAAGGTTT1- T22020C G24680T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_416042
 2020-01-26 2020-03-20
 China hCoV-19/Hangzhou/ZJU-02/2020
 -T2AGAGTGCTTAG GG7AT -10TTAATCAGCACGAAGTTCTACTTGCACCA C8782T T28144C

EPI_ISL_416473
 2020-01-26 2020-03-22
 China hCoV-19/Hangzhou/ZJU-08/2020
 A1CCCCCCCCCCCCCCCCCCCCCCCCCCCCTTTTCAAGCAGAAGACGGCATACGAGATGCGCA AA5GT -8ACTGGA T11C T13G -16GTGTGCT C21G GG23TC AAC26- C8782T C18060T T28144C

EPI_ISL_421239
 2020-01-26 2020-04-07
 China hCoV-19/Shangrao/JX105/2020
 ATTAAAGGTTTATACCTTCCCAGG1- G1265A C8782T C10741T T28144C AAAAAAAAAAAA29892-

EPI_ISL_421253
 2020-01-26 2020-04-07
 China hCoV-19/Jian/JX129/2020
 ATTAAAGGTTTATACCTTCCCAGG1- T21111G G24680T C25539T AAAAAAAAAAAA29892-

EPI_ISL_421260
 2020-01-26 2020-04-07
 China hCoV-19/Xinyu/JX124/2020
 ATTAAAGGTTTATACCTTCCCAGG1- G1397A G11083T G24812T T28688C G29742T AAAAAAAAAAAA29892-

EPI_ISL_428466 NMDC60013129-01
 2020-01-26 2020-04-21
 China hCoV-19/Guangdong/20SF629/2020
 G4184A C11074T G11083T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_428467 NMDC60013130-01
 2020-01-26 2020-04-21
 China hCoV-19/Guangdong/20SF630/2020
 C4890T C17373T G28041T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_428468 NMDC60013131-01
 2020-01-26 2020-04-21
 China hCoV-19/Guangdong/20SF632/2020
 C4890T C17373T G28041T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_437619 MT447159
 2020-01-26 2020-05-01
 Thailand SARS-CoV-2/human/THA/SI200478-NST/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C9996T G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_447915
 2020-01-26 2020-05-19
 Thailand hCoV-19/Thailand/Bangkok_269/2020
 C9996T G26144T AAAAAAAAAAAA29892-

EPI_ISL_450501 GWHACDF01000001 MT259227
 2020-01-26 2020-03-26
 China SARS-CoV-2/Wuhan_YB012611/human/2020/CHN
 ATTAAAGGTTTATA1- T1623C T3299C C20692T C25156T AT29844GG TT29847GG G29868C AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_450502 GWHACDG01000001 MT259228
 2020-01-26 2020-03-26
 China SARS-CoV-2/Wuhan_YB012605/human/2020/CHN
 ATTAAAGGTTTATA1- C20692T TT29845GA G29861A G29868C AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_450503 GWHACDH01000001 MT259229
 2020-01-26 2020-03-26
 China SARS-CoV-2/Wuhan_YB012602/human/2020/CHN
 ATTAAAGGTTTATA1- C20692T G29868C AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_451312
 2020-01-26 2020-05-24
 China hCoV-19/China/SC-GA-061/2020
 C683T A3368- C18512T G18525- C25317T

EPI_ISL_451313
 2020-01-26 2020-05-24
 China hCoV-19/China/SC-GA-062/2020
 T23287G C26478T

EPI_ISL_451365
 2020-01-26 2020-05-24
 China hCoV-19/China/SC-PHCC2-045/2020
 C8782T A22206G C25317T T28144C

EPI_ISL_455680 GWHAMMJ01000001 MT534630
 2020-01-26 2020-05-29
 China SARS-CoV-2/human/CHN/Changzhou_JS27/2020
 G11083T TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_455686 MT407652
 2020-01-26 2020-04-27
 China SARS-CoV-2/human/CHN/CN3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATC1- A19722G C23525T AAAAAAAAAAAAAAAAAAAA29884-

EPI_ISL_455687 MT407653
 2020-01-26 2020-04-27
 China SARS-CoV-2/human/CHN/CN4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATC1- C2485T T3380C C8782T T9370G T13954G C18060T T28144C AAAAAAAAAAAAAAAAAAAA29884-

EPI_ISL_493167 GWHALRI01000001
 2020-01-26 2020-07-21
 China SARS-CoV-2/Wuhan_C5/human/2020/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- A23116T ACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29695-

EPI_ISL_493168 GWHALRJ01000001
 2020-01-26 2020-07-21
 China SARS-CoV-2/Wuhan_C7/human/2020/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C8782T T28144C ACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29695-

EPI_ISL_493169 GWHALRK01000001
 2020-01-26 2020-07-21
 China SARS-CoV-2/Wuhan_C10/human/2020/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- T4402C G5062T C8782T C22747T T28144C ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_493170 GWHALRL01000001
 2020-01-26 2020-07-21
 China SARS-CoV-2/Wuhan_C12/human/2020/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_493171 GWHALRM01000001
 2020-01-26 2020-07-21
 China SARS-CoV-2/Wuhan_C13/human/2020/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C8782T C18060T T28144C ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_493172 GWHALRN01000001
 2020-01-26 2020-07-21
 China SARS-CoV-2/Wuhan_C14/human/2020/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- A1620C C2623T A25383G C28253T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_493173 GWHALRO01000001
 2020-01-26 2020-07-21
 China SARS-CoV-2/Wuhan_C26/human/2020/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- T5905C C8782T T28144C ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_493174 GWHALRP01000001
 2020-01-26 2020-07-21
 China SARS-CoV-2/Wuhan_C31/human/2020/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- G8432T C8782T G18712T T28144C C29095T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_493175 GWHALRQ01000001
 2020-01-26 2020-07-21
 China SARS-CoV-2/Wuhan_C43/human/2020/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C7482T C8782T C12513T C27213T T28144C ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_493176 GWHALRR01000001
 2020-01-26 2020-07-21
 China SARS-CoV-2/Wuhan_C45/human/2020/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- G15907A ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_493177 GWHALRS01000001
 2020-01-26 2020-07-21
 China SARS-CoV-2/Wuhan_C47/human/2020/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_493178 GWHALRT01000001
 2020-01-26 2020-07-21
 China SARS-CoV-2/Wuhan_C77/human/2020/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C8782T T13402G T28144C ACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29695-

EPI_ISL_493179 GWHALRU01000001
 2020-01-26 2020-07-21
 China SARS-CoV-2/Wuhan_C93/human/2020/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C8782T T13402G ACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29695-

EPI_ISL_493180 GWHALRV01000001
 2020-01-26 2020-07-21
 China SARS-CoV-2/Wuhan_C94/human/2020/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C8782T C13730T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_493181 GWHALRW01000001
 2020-01-26 2020-07-21
 China SARS-CoV-2/Wuhan_C98/human/2020/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C8782T C17410T T28144C ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_493182 GWHALRX01000001
 2020-01-26 2020-07-21
 China SARS-CoV-2/Wuhan_C100/human/2020/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C8782T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_493183 GWHALRY01000001
 2020-01-26 2020-07-21
 China SARS-CoV-2/Wuhan_C101/human/2020/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C8782T T28144C ACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29695-

EPI_ISL_493184 GWHALRZ01000001
 2020-01-26 2020-07-21
 China SARS-CoV-2/Wuhan_C102/human/2020/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C8782T C17410T T28144C ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_493185 GWHALSA01000001
 2020-01-26 2020-07-21
 China SARS-CoV-2/Wuhan_C103/human/2020/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C8782T C17410T T28144C ACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29695-

EPI_ISL_493186 GWHALSB01000001
 2020-01-26 2020-07-21
 China SARS-CoV-2/Wuhan_C106/human/2020/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C8782T C16349T C17410T T28144C ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_493188 GWHALSC01000001
 2020-01-26 2020-07-21
 China SARS-CoV-2/Wuhan_C109/human/2020/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C8782T C17410T T28144C ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_493189 GWHALSD01000001
 2020-01-26 2020-07-21
 China SARS-CoV-2/Wuhan_C111/human/2020/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C8782T C17410T T28144C ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_529992
 2020-01-26 2020-09-10
 Spain hCoV-19/Spain/MD-H12-61/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G3473A C8782T C19983T C26088T T28144C ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_539337
 2020-01-26 2020-09-16
 China hCoV-19/Hunan/HN-CIDC-P8/2020
 T25525A

MW011766
 2020-01-26 2020-09-16
 China SARS-CoV-2/human/CHN/P8-SARS-CoV-2/2020
 T25525A

EPI_ISL_410044 MT044258
 2020-01-27 2020-02-11
 United States 2019-nCoV/USA-CA6/2020
 TGGTCATGTTATGGT508- AAGTCATTT686- AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_410713
 2020-01-27 2020-02-18
 Singapore hCoV-19/Singapore/7/2020
 G26144T C28849T AAAAAAAAAAAA29892-

EPI_ISL_411902
 2020-01-27 2020-02-21
 Cambodia hCoV-19/Cambodia/0012/2020
 A1- G25654T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_413522 MT012098
 2020-01-27 2020-02-01
 India SARS-CoV-2/human/IND/29/2020
 ATTAAAGGTTTAT1- T2277C C6695T C14657T C17373T TTA21991- G22785T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_413693 CNA0013888
 2020-01-27 2020-03-09
 China Weifang/WFCDC0003/2020
 ATTAAAGGTTTAT1- C2334T C26198T GAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29864-

EPI_ISL_413694 CNA0013887
 2020-01-27 2020-03-09
 China Weifang/WFCDC0004/2020
 ATTAAAGGTTT1- T22020C G24680T AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_418996
 2020-01-27 2020-04-01
 Singapore hCoV-19/Singapore/15/2020
 C8782T ACTTGAACTGCAAGATCATAATGAAACTTGTCACGCCTAAACGAACATGAAATTTCTTGTTTTCTTAGGAATCATCACAACTGTAGCTGCATTTCACCAAGAATGTAGTTTACAGTCATGTACTCAACATCAACCATATGTAGTTGATGACCCGTGTCCTATTCACTTCTATTCTAAATGGTATATTAGAGTAGGAGCTAGAAAATCAGCACCTTTAATTGAATTGTGCGTGGATGAGGCTGGTTCTAAATCACCCATTCAGTACATCGATATCGGTAATTATACAGTTTCCTGTTTACCTTTTACAATTAATTGCCAGGAACCTAAATTGGGTAGTCTTGTAGTGCGTTGTTCGTTCTATGAAGACTTTTTAGAGTATCAT27848- AAAAAAAAAAAA29892-

EPI_ISL_421247
 2020-01-27 2020-04-07
 China hCoV-19/Nanchang/JX149/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C8782T T28144C AAAAAAAAAAAA29892-

EPI_ISL_421256
 2020-01-27 2020-04-07
 China hCoV-19/Jian/JX169/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C11575A G26144T G26640T AAAAAAAAAAAA29892-

EPI_ISL_421259
 2020-01-27 2020-04-07
 China hCoV-19/Pingxiang/JX151/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C22323T AAAAAAAAAAAA29892-

EPI_ISL_424359 GWHACBB01000001 MT291835
 2020-01-27 2020-04-19
 China SARS-CoV-2/human/CHN/Beijing_IME-BJ05/2020
 ATTAA1- T7082C C15866G AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_424359 GWHACBB01000001 MT291835
 2020-01-27 2020-04-19
 China SARS-CoV-2/human/CHN/Beijing_IME-BJ05/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C186T C23520T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_428469 NMDC60013132-01
 2020-01-27 2020-04-21
 China hCoV-19/Guangdong/20SF665/2020
 TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_428470 NMDC60013133-01
 2020-01-27 2020-04-21
 China hCoV-19/Guangdong/20SF684/2020
 C8782T T28144C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_428471 NMDC60013134-01
 2020-01-27 2020-04-21
 China hCoV-19/Guangdong/20SF685/2020
 C8782T T28144C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_428473 NMDC60013136-01
 2020-01-27 2020-04-21
 China hCoV-19/Guangdong/20SF758/2020
 C815T C12213T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_429102 CNA0013954
 2020-01-27 2020-04-23
 China Guangzhou/GZMU0059/2020
 C21707T AAAAAAAAAAAA29892-

EPI_ISL_434566 MT114415
 2020-01-27 2020-02-24
 China SARS-CoV-2/human/HKG/HKU-903b/2020
 G1397A G11083T T28688C G29742T AAAAAAAAAAAA29892-

EPI_ISL_434567 MT114416
 2020-01-27 2020-02-24
 China SARS-CoV-2/human/HKG/HKU-907a/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C6501T C8782T T28144C AAAAAAAAAAAA29892-

EPI_ISL_434569 MT114418
 2020-01-27 2020-02-24
 China SARS-CoV-2/human/HKG/HKU-908a/2020
 C8092T G11083T AAAAAAAAAAAA29892-

EPI_ISL_451319
 2020-01-27 2020-05-24
 China hCoV-19/China/SC-MY-053/2020
 C635T T28144C C28253T

EPI_ISL_451320
 2020-01-27 2020-05-24
 China hCoV-19/China/SC-MY-054/2020
 T28144C

EPI_ISL_451339
 2020-01-27 2020-05-24
 China hCoV-19/China/SC-NJ-090/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500-

EPI_ISL_451351
 2020-01-27 2020-05-24
 China hCoV-19/China/SC-PHCC1-030/2020
 C9565A G10178- G17590T T28144C

EPI_ISL_451353
 2020-01-27 2020-05-24
 China hCoV-19/China/SC-PHCC1-032/2020
 T28144C

EPI_ISL_451359
 2020-01-27 2020-05-24
 China hCoV-19/China/SC-PHCC2-039/2020
 G26458A

EPI_ISL_451381
 2020-01-27 2020-05-24
 China hCoV-19/China/SC-WCH-311/2020
 AT1- G26144T

EPI_ISL_451384
 2020-01-27 2020-05-24
 China hCoV-19/China/SC-WCH3-255/2020
 C8782T T28144C

EPI_ISL_451387
 2020-01-27 2020-05-24
 China hCoV-19/China/SC-WCH4-285/2020
 

EPI_ISL_462283
 2020-01-27 2020-06-08
 Singapore hCoV-19/Singapore/165/2020
 T4693Y T9642C A11451G C25214T C26873Y AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_518548 MT971484
 2020-01-27 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5749/2020
 ATTAAAGGTTTA1- C66T C241T A1163T C3037T T7540C C14408T T16491C G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_529993
 2020-01-27 2020-09-10
 Spain hCoV-19/Spain/MD-H12-62/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C14408T G22468T A23403G A24129G GGG28881AAC T29685G ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_539336
 2020-01-27 2020-09-16
 China hCoV-19/Hunan/HN-CIDC-P7/2020
 T25525A

MT123292
 2020-01-27 2020-02-28
 China SARS-CoV-2/human/CHN/IQTC04/2020
 A1C C8782T C12534T C13072T T28144C A29873T AAA29876GGT AAA29880GCG -29886TTCCTTGTC AA29888CT A29892C AA29894CG AAAAA29899GGCGC

MW011765
 2020-01-27 2020-09-16
 China SARS-CoV-2/human/CHN/P7-SARS-CoV-2/2020
 T25525A

CNA0013703
 2020-01-28 2020-03-09
 China Guangzhou/GZ8H0008/2020
 ATTAAAGGTTTATA1- G6819T C13072T G29527A GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_406862
 2020-01-28 2020-01-31
 Germany hCoV-19/Germany/BavPat1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_407894 MT050414
 2020-01-28 2020-02-06
 Australia SARS-CoV-2/human/AUS/QLD01/2020_FSS915
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C8782T T28144C G28878A G29742A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_410045 MT044257
 2020-01-28 2020-02-11
 United States 2019-nCoV/USA-IL2/2020
 T490A C3177T C8782T C24034T T26729C G28077C T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_411219
 2020-01-28 2020-02-19
 France hCoV-19/France/IDF0386-islP1/2020
 G22661T G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_411220
 2020-01-28 2020-02-19
 France hCoV-19/France/IDF0386-islP3/2020
 G22661T G26144T AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_411927
 2020-01-28 2020-02-21
 Taiwan hCoV-19/Taiwan/4/2020
 A1- AAAAAAAAAAAA29892-

EPI_ISL_413519 MT135042
 2020-01-28 2020-03-02
 China SARS-CoV-2/human/CHN/231/2020
 T4402C G5062T C8782T T28144C

EPI_ISL_413520 MT135043
 2020-01-28 2020-03-02
 China SARS-CoV-2/human/CHN/233/2020
 T4402C G5062T C8782T T28144C A29301T

EPI_ISL_413521 MT135044
 2020-01-28 2020-03-02
 China SARS-CoV-2/human/CHN/235/2020
 T4402C G5062T C8782T T28144C

EPI_ISL_416318
 2020-01-28 2020-03-20
 China hCoV-19/Shanghai/SH0004/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C23347T T28144C C29095T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416319
 2020-01-28 2020-03-20
 China hCoV-19/Shanghai/SH0005/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T28144C C29095T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416320
 2020-01-28 2020-03-20
 China hCoV-19/Shanghai/SH0007/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- A22695G C24370T T27554C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416321
 2020-01-28 2020-03-20
 China hCoV-19/Shanghai/SH0008/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C203T C14889T C21707T C26533T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416474
 2020-01-28 2020-03-22
 China hCoV-19/Hangzhou/ZJU-09/2020
 A1CCCCCCCTTTTCAAGCAGAAGACGGCATACGAGA T3C A5T -G7GCCGGTGACTGGAGTTCAGACGTGTGCTCTTCCA T10C T22303G

EPI_ISL_424357 GWHACAZ01000001 MT291833
 2020-01-28 2020-03-02
 China SARS-CoV-2/human/CHN/Beijing_IME-BJ03/2020
 ATTAAAGGTTTATACCTTCC1- T4402C G5062T C8782T T28144C TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_424357 GWHACAZ01000001 MT291833
 2020-01-28 2020-03-02
 China SARS-CoV-2/human/CHN/Beijing_IME-BJ03/2020
 ATTAAAGGTTTATACCTTCC1- T4402C G5062T C8782T T28144C TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_424358 GWHACBA01000001 MT291834
 2020-01-28 2020-03-02
 China SARS-CoV-2/human/CHN/Beijing_IME-BJ04/2020
 ATTAAAGG1- G2875A T4402C G5062T C8782T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_424358 GWHACBA01000001 MT291834
 2020-01-28 2020-03-02
 China SARS-CoV-2/human/CHN/Beijing_IME-BJ04/2020
 ATTAAAGG1- G2875A T4402C G5062T C8782T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_428472 NMDC60013135-01
 2020-01-28 2020-04-21
 China hCoV-19/Guangdong/20SF753/2020
 G16188T G26144T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_428474 NMDC60013137-01
 2020-01-28 2020-04-21
 China hCoV-19/Guangdong/20SF808/2020
 C12741T C27150T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_428475 NMDC60013138-01
 2020-01-28 2020-04-21
 China hCoV-19/Guangdong/20SF812/2020
 C2749T C15324T C16658T C25810G G28827A C29303T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_428476 NMDC60013139-01
 2020-01-28 2020-04-21
 China hCoV-19/Guangdong/20SF813/2020
 C8782T T28144C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_429853
 2020-01-28 2020-04-24
 China hCoV-19/Lishui/LS556/2020
 ATTAAAGGTTT1- C3885A C12778T T13270C G29449T AA29893CT AAAAAA29898C

EPI_ISL_430443
 2020-01-28 2020-04-27
 Malaysia hCoV-19/Malaysia/IMR_WC085/2020
 A1G TA3AC T3163A T16272C G27147C G29862T GAA29864CCT GA29868CC AAA29872GGT A29877C AA29881CC AAAAAAAAAAAAAAAAAAA29885C

EPI_ISL_450198 MT270101
 2020-01-28 2020-03-28
 Germany SARS-CoV-2/human/DEU/BavPat1-ChVir929/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_450200 MT270103
 2020-01-28 2020-03-28
 Germany SARS-CoV-2/human/DEU/BavPat3-ChVir1020/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_451376
 2020-01-28 2020-05-24
 China hCoV-19/China/SC-WCH1-005/2020
 C8529T G20635A C22482T G26144T

EPI_ISL_451378
 2020-01-28 2020-05-24
 China hCoV-19/China/SC-WCH2-017/2020
 C26370T C29640T G29742A

EPI_ISL_529994
 2020-01-28 2020-09-10
 Spain hCoV-19/Spain/MD-H12-63/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C14408T G22468T A23403G A24129G GGG28881AAC T29685G ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_539335
 2020-01-28 2020-09-16
 China hCoV-19/Hunan/HN-CIDC-P6/2020
 A8891G T13781G T25525A

MW011764
 2020-01-28 2020-09-16
 China SARS-CoV-2/human/CHN/P6-SARS-CoV-2/2020
 A8891G T13781G T25525A

NMDC60013275
 2020-01-28 2020-06-01
 China hCoV-19/Guangzhou/ID104/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G26144T C29870A

NMDC60013276
 2020-01-28 2020-06-01
 China hCoV-19/Guangzhou/ID097/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C10604T A11822G C29303T G29868A

CNA0013699
 2020-01-29 2020-03-09
 China Guangzhou/GZ8H0003/2020
 -2AACAAACCCAAGGAAATTGTCCGGACCAGGAACTAATCAGACAACGAACTGA A5C G7AACATT TTTA9GCCG C8782T C12534T C13072T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

CNA0013704
 2020-01-29 2020-03-09
 China Guangzhou/GZ8H0010/2020
 ATTAAAGGTTT1- G6819T T6996C C17373T G29527A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872C

CNA0013705
 2020-01-29 2020-03-09
 China Guangzhou/GZ8H0011/2020
 ATTAAAGGTTT1- G6819T C17373T G29527A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_407071
 2020-01-29 2020-02-03
 United Kingdom hCoV-19/England/01/2020
 C8782T T18488C T22586Y T23605G T28144C ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_407073
 2020-01-29 2020-02-03
 United Kingdom hCoV-19/England/02/2020
 C8782T T18488C T23605G T28144C A29596G ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_408008 MT027062
 2020-01-29 2020-02-06
 United States 2019-nCoV/USA-CA3/2020
 G614A A5084G C28854T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_408009 MT027063
 2020-01-29 2020-02-06
 United States 2019-nCoV/USA-CA4/2020
 G614A A5084G C28854T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_408010 MT027064
 2020-01-29 2020-02-06
 United States 2019-nCoV/USA-CA5/2020
 C2091T C21707T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_408430
 2020-01-29 2020-02-08
 France hCoV-19/France/IDF0515/2020
 A1- C1190T C9438T G11083T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_408431
 2020-01-29 2020-02-08
 France hCoV-19/France/IDF0626/2020
 ATTAAAGGTTT1- C25153T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_408665 LC522973
 2020-01-29 2020-02-10
 Japan 2019-nCoV/Japan/TY/WK-012/2020
 ATT1- C2662T C3792T C8782T T28144C C29095T AAAAAAAAAAAAAAAAAAAAAA29882-

EPI_ISL_408669 LC522972
 2020-01-29 2020-02-10
 Japan 2019-nCoV/Japan/KY/V-029/2020
 ATT1- G11557T C15324T C25810G C29303T AAAAAAAAAAAAAAAAAAAAAA29882-

EPI_ISL_409067 MT039888
 2020-01-29 2020-02-11
 United States 2019-nCoV/USA-MA1/2020
 G3518T G5480R A17423G C24034T C28854T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_410545
 2020-01-29 2020-02-17
 Italy hCoV-19/Italy/INMI1-isl/2020
 A2269T G26144T GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_410984
 2020-01-29 2020-02-18
 France hCoV-19/France/IDF0515-isl/2020
 C1190T C9438T G11083T

EPI_ISL_412967 MT123291
 2020-01-29 2020-02-28
 China SARS-CoV-2/human/CHN/IQTC02/2020
 A1CCCTGAATTAGACTCA -4CAAGG G6819T C17373T C19610T G29527A A29886CCTTGT A29888G A29890G A29892G AA29894GT AA29902TT

EPI_ISL_412974
 2020-01-29 2020-03-01
 Italy hCoV-19/Italy/SPL1/2020
 G11083T G26144T

EPI_ISL_416322
 2020-01-29 2020-03-20
 China hCoV-19/Shanghai/SH0009/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C8782T C17372T T28144C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416323
 2020-01-29 2020-03-20
 China hCoV-19/Shanghai/SH0010/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C3176T C8782T C21855T T28144C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416324
 2020-01-29 2020-03-20
 China hCoV-19/Shanghai/SH0011/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C12896T C17373T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_418993
 2020-01-29 2020-04-01
 Singapore hCoV-19/Singapore/20/2020
 C865T C6573Y C8782T C13694T C18060T T28144C AAAAAAAAAAAAA29891-

EPI_ISL_418994
 2020-01-29 2020-04-01
 Singapore hCoV-19/Singapore/3Clin/2020
 G261K G9953R T9959Y G11083T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_421238
 2020-01-29 2020-04-07
 China hCoV-19/Nanchang/JX174/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C8782T G13183A T28144C C29095T AAAAAAAAAAAA29892-

EPI_ISL_421261
 2020-01-29 2020-04-07
 China hCoV-19/Nanchang/JX176/2020
 ATTAAAGGTTTATACCTTCCCAGG1- G1397A G24812T A28305C T28688C G29742T AAAAAAAAAAAA29892-

EPI_ISL_421262
 2020-01-29 2020-04-07
 China hCoV-19/Nanchang/JX155/2020
 ATTAAAGGTTTATACCTTCCCAGG1- G1397A G11083T G24812T A28305C T28688C G29742T AAAAAAAAAAAA29892-

EPI_ISL_424360 GWHACBD01000001 MT291836
 2020-01-29 2020-03-02
 China SARS-CoV-2/human/CHN/Beijing_IME-BJ07/2020
 ATTAAAGG1- C8782T C23271T C24023T G26526T G27225T T28144C C28887T ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_424360 GWHACBD01000001 MT291836
 2020-01-29 2020-03-02
 China SARS-CoV-2/human/CHN/Beijing_IME-BJ07/2020
 ATTAAAGG1- C8782T C23271T C24023T G26526T G27225T T28144C C28887T ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_428441 NMDC60013104-01
 2020-01-29 2020-04-21
 China hCoV-19/Guangdong/20SF1107/2020
 A3842G C8782T C25521T G27632A T28144C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_428478 NMDC60013141-01
 2020-01-29 2020-04-21
 China hCoV-19/Guangdong/20SF840/2020
 C4890T C17373T G28041T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_429096 CNA0013948
 2020-01-29 2020-04-23
 China Guangzhou/GZMU0051/2020
 C21707T AAAAAAAAAAAA29892-

EPI_ISL_429097 CNA0013949
 2020-01-29 2020-04-23
 China Guangzhou/GZMU0052/2020
 C21707T AAAAAAAAAAAA29892-

EPI_ISL_429098 CNA0013950
 2020-01-29 2020-04-23
 China Guangzhou/GZMU0054/2020
 C21707T AAAAAAAAAAAA29892-

EPI_ISL_429105 CNA0013957
 2020-01-29 2020-04-23
 China Guangzhou/GZMU0055/2020
 C21707T A29866G G29868A C29870A AA29872TT AAAA29876TTTT AA29881GT AAAA29884GCGC

EPI_ISL_430722
 2020-01-29 2020-04-27
 China hCoV-19/Beijing/BJ287/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C23271T C24023T G26526T G27225T T28144C C28887T TGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29840-

EPI_ISL_430725
 2020-01-29 2020-04-27
 China hCoV-19/Beijing/BJ288/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C23271T C24023T G26526T G27225T T28144C C28887T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_430736
 2020-01-29 2020-04-27
 China hCoV-19/Beijing/BJ252/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C10604T A15647G A21137G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_430742
 2020-01-29 2020-04-27
 China hCoV-19/Beijing/BJ251/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATC1- C10604T A15647G A21137G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_434568 MT114417
 2020-01-29 2020-02-24
 China SARS-CoV-2/human/HKG/HKU-907b/2020
 C6501T C8782T T28144C AAAAAAAAAAAA29892-

EPI_ISL_434570 MT114419
 2020-01-29 2020-02-24
 China SARS-CoV-2/human/HKG/HKU-908b/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C8092T G11083T AAAAAAAAAAAAAAAA29888-

EPI_ISL_435137
 2020-01-29 2020-05-03
 United Arab Emirates hCoV-19/United Arab Emirates/L5630/2020
 C8782T C12880T T28144C C29095T

EPI_ISL_437618 MT447160
 2020-01-29 2020-05-01
 Thailand SARS-CoV-2/human/THA/SI200615-NT/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- G2117T C2915A G15327T G25217T GAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29745-

EPI_ISL_447916
 2020-01-29 2020-05-19
 Thailand hCoV-19/Thailand/Bangkok_323/2020
 C6941T A18114G C26370T AAAAAAAAAAAA29892-

EPI_ISL_447917
 2020-01-29 2020-05-19
 Thailand hCoV-19/Thailand/Nonthaburi_363/2020
 C1150T G26144T AAAAAAAAAAAA29892-

EPI_ISL_450199 MT270102
 2020-01-29 2020-03-28
 Germany SARS-CoV-2/human/DEU/BavPat4-ChVir1019/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T G6446A C9891Y A23403G AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_451330
 2020-01-29 2020-05-24
 China hCoV-19/China/SC-NC-071/2020
 AAGATTTTC729- C26404T T28144C

EPI_ISL_451335
 2020-01-29 2020-05-24
 China hCoV-19/China/SC-NC-076/2020
 C17676T CC18109-T

EPI_ISL_451336
 2020-01-29 2020-05-24
 China hCoV-19/China/SC-NC-077/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- G11369A

EPI_ISL_451363
 2020-01-29 2020-05-24
 China hCoV-19/China/SC-PHCC2-043/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500-

EPI_ISL_451366
 2020-01-29 2020-05-24
 China hCoV-19/China/SC-PHCC2-046/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- CC18109-T TG18987-

EPI_ISL_497771
 2020-01-29 2020-07-25
 China hCoV-19/Hong Kong/HKU-200723-004/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T13929C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_497797
 2020-01-29 2020-07-25
 China hCoV-19/Hong Kong/HKU-200723-030/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C9967T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_497827
 2020-01-29 2020-07-25
 China hCoV-19/Hong Kong/HKU-200723-060/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C9967T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529995
 2020-01-29 2020-09-10
 Spain hCoV-19/Spain/MD-H12-64/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C14408T G22468T A23403G A24129G GGG28881AAC T29685G ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_539338
 2020-01-29 2020-09-16
 China hCoV-19/Hunan/HN-CIDC-P10/2020
 T25525A

EPI_ISL_539339
 2020-01-29 2020-09-16
 China hCoV-19/Hunan/HN-CIDC-P11/2020
 C15951T T25525A

MT020781
 2020-01-29 2020-02-04
 Finland nCoV-FIN-29-Jan-2020
 A1C C21707T TGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29807-

MT123293
 2020-01-29 2020-02-28
 China SARS-CoV-2/human/CHN/IQTC03/2020
 ATTAAA1- G654A G6819T T6996C C17373T G29527A AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

MW011767
 2020-01-29 2020-09-16
 China SARS-CoV-2/human/CHN/P10-SARS-CoV-2/2020
 T25525A

MW011768
 2020-01-29 2020-09-16
 China SARS-CoV-2/human/CHN/P11-SARS-CoV-2/2020
 C15951T T25525A

NMDC60013277
 2020-01-29 2020-06-01
 China hCoV-19/Guangzhou/ID100/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C26447G T28144C T28250G A28254- C29095T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_407896 MT050415
 2020-01-30 2020-02-06
 Australia SARS-CoV-2/human/AUS/QLD02/2020_FSS916
 ATTAAA1- C8782T C24990T C25587T T28144C G28878A G29742A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_412029
 2020-01-30 2020-02-24
 China hCoV-19/Hong Kong/VB20024950-2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- T13929C G26144T TATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29832-

EPI_ISL_412869
 2020-01-30 2020-02-28
 South Korea hCoV-19/South Korea/KCDC05/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCAC1- A1740C T8767C C8782T C17104T G26167T T28144C G29593A A29869G AAAAAAAAAAAAAAAA29888-

EPI_ISL_412870
 2020-01-30 2020-02-28
 South Korea hCoV-19/South Korea/KCDC06/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCAC1- T4402C G5062T C8782T T28144C AAAAAAAAAAAAAAAA29888-

EPI_ISL_413853 NMDC60013020-01
 2020-01-30 2020-03-09
 China hCoV-19/Guangdong/2020XN4243-P0035/2020
 C8782T T28144C G28878A G29742A

EPI_ISL_413854 NMDC60013021-01
 2020-01-30 2020-03-09
 China hCoV-19/Guangdong/2020XN4475-P0042/2020
 C6501T C8782T T28144C

EPI_ISL_413858 NMDC60013025-01
 2020-01-30 2020-03-09
 China hCoV-19/Guangdong/2020XN4459-P0041/2020
 C8782T T28144C

EPI_ISL_413860 NMDC60013027-01
 2020-01-30 2020-03-09
 China hCoV-19/Guangdong/2020XN4273-P0036/2020
 T8767C C8782T T28144C G29593A

EPI_ISL_414941
 2020-01-30 2020-03-16
 China hCoV-19/Shandong/LY008-2/2020
 ATTAAAGGTTTATACC1- T3171C C8782T T28144C AAAAAAAAAAAAAAAAAAA29885-

EPI_ISL_416326
 2020-01-30 2020-03-20
 China hCoV-19/Shanghai/SH0013/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C8782T T28144C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416331
 2020-01-30 2020-03-20
 China hCoV-19/China/Shanghai/SH0022
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G1397A A10323G C11074T G11083T T28688C G29742T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416332
 2020-01-30 2020-03-20
 China hCoV-19/Shanghai/SH0023/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G1397A A10323G C11074T G11083T T28688C G29742T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416333
 2020-01-30 2020-03-20
 China hCoV-19/Shanghai/SH0024/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C8782T T28144C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416352
 2020-01-30 2020-03-20
 China hCoV-19/Shanghai/SH0043/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C8782T T28144C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416365
 2020-01-30 2020-03-20
 China hCoV-19/Shanghai/SH0058/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- T4463C C4596T A5084G T7144A T8800C C28854T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416366
 2020-01-30 2020-03-20
 China hCoV-19/Shanghai/SH0059/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G285T C8782T T23986C G25947T T28144C C29095T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_421241
 2020-01-30 2020-04-07
 China hCoV-19/Nanchang/JX177/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C3768T T8767C C8782T C12076T T28144C AAAAAAAAAAAA29892-

EPI_ISL_425118
 2020-01-30 2020-04-14
 South Korea hCoV-19/Korea/KCDC2002/2020
 ATTAAAGGTTTATACCT1- T8767C C8782T C17104T G26167T T28144C G29593A

EPI_ISL_428442 NMDC60013105-01
 2020-01-30 2020-04-21
 China hCoV-19/Guangdong/20SF1136/2020
 G26144T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_428444 NMDC60013107-01
 2020-01-30 2020-04-21
 China hCoV-19/Guangdong/20SF1152/2020
 G3518T G12797A A17423G G28655T C28854T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_428445 NMDC60013108-01
 2020-01-30 2020-04-21
 China hCoV-19/Guangdong/20SF1153/2020
 A5084G G27261A C28854T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_450209 MT270112
 2020-01-30 2020-03-28
 Germany SARS-CoV-2/human/DEU/BavPat2-ChVir984-ChVir1017/2020
 ATTAAAGGTTTATAC1- C241T C3037T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_450409 MT365029
 2020-01-30 2020-04-17
 China SARS-CoV-2/human/HKG/HKU-911a/2020
 C9967T AAAAAAAAAAAA29892-

EPI_ISL_450412 MT365032
 2020-01-30 2020-04-17
 China SARS-CoV-2/human/HKG/HKU-904a/2020
 ATTA1- C4158T C8782T C18828T T28144C AAAAAAAAAAAA29892-

EPI_ISL_451302
 2020-01-30 2020-05-24
 Italy hCoV-19/Italy/INMI2-N/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- G11083T G26144T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_451314
 2020-01-30 2020-05-24
 China hCoV-19/China/SC-GA-063/2020
 C18512T

EPI_ISL_451315
 2020-01-30 2020-05-24
 China hCoV-19/China/SC-GA-064/2020
 C18512T

EPI_ISL_451332
 2020-01-30 2020-05-24
 China hCoV-19/China/SC-NC-073/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- C17573T A18535- T28144C

EPI_ISL_451334
 2020-01-30 2020-05-24
 China hCoV-19/China/SC-NC-075/2020
 C3037T C16247T

EPI_ISL_451337
 2020-01-30 2020-05-24
 China hCoV-19/China/SC-NC-078/2020
 C18060T G20275T T28144C G28195T

EPI_ISL_451343
 2020-01-30 2020-05-24
 China hCoV-19/China/SC-NJ-094/2020
 CC18109-T A22511G

EPI_ISL_451389
 2020-01-30 2020-05-24
 China hCoV-19/China/SC-WCH4-287/2020
 C19145T T28144C

EPI_ISL_451395
 2020-01-30 2020-05-24
 China hCoV-19/China/SC-WCH4-301/2020
 A13175G C17676T

EPI_ISL_451396
 2020-01-30 2020-05-24
 China hCoV-19/China/SC-YA-087/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- C17373T CC18109-T

EPI_ISL_455603
 2020-01-30 2020-06-01
 Australia hCoV-19/Australia/VPRL014/2020
 C3037T C17074T C27213T T27384C

EPI_ISL_455790
 2020-01-30 2020-06-01
 Malaysia hCoV-19/Malaysia/IMR_WC119/2020
 ATTAAAGGTTTATACCTTCCCA1- G4390T C5717T C8782T G16075T T28144C TAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29693-

EPI_ISL_463894
 2020-01-30 2020-06-10
 China hCoV-19/Shaoxing/02/2020
 ATTAAAG1- C8782T T28144C AAAAAAAAAAAAAAAAA29887-

EPI_ISL_463895
 2020-01-30 2020-06-10
 China hCoV-19/Shaoxing/03/2020
 ATTAAAGGTT1- C8782T T28144C

EPI_ISL_468032
 2020-01-30 2020-06-16
 Australia hCoV-19/Australia/SAP214/2020
 AT1- C3037T C17074T C27213T T27384C

EPI_ISL_468037
 2020-01-30 2020-06-16
 Australia hCoV-19/Australia/SAP305/2020
 C3037T C17074T C27213T T27384C

EPI_ISL_480779 MT745747
 2020-01-30 2020-07-02
 Australia SARS-CoV-2/human/AUS/SA02/2020
 C3037T C17074T C27213T T27384C

EPI_ISL_480780 MT745748
 2020-01-30 2020-07-02
 Australia SARS-CoV-2/human/AUS/SA03/2020
 C3037T C17074T C27213T T27384C

EPI_ISL_497962
 2020-01-30 2020-07-26
 South Korea hCoV-19/Korea/KCDC2061/2020
 ATTAAA1- A26- C28T G7675T T8767C C8782T C17104T C18167T G26167T T28144C G29134A G29593A C29743T T29867A

EPI_ISL_529996
 2020-01-30 2020-09-10
 Spain hCoV-19/Spain/MD-H12-65/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1687T C3037T C14408T A20268G C21742T A23403G C26735T ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

MT066156
 2020-01-30 2020-02-14
 Italy SARS-CoV-2/human/ITA/INMI1/2020
 A2269T G26144T GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

CNA0013700
 2020-01-31 2020-03-09
 China Guangzhou/GZ8H0004/2020
 AT1GC AA4GC G8A -A11TGGAG C8782T C12534T C13072T G27235A T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

CNA0013701
 2020-01-31 2020-03-09
 China Guangzhou/GZ8H0005/2020
 A1G A4G -11TTAATTGTTACTTTCCTTTACAATCATATGGTTTCCAACCCAC C8782T C12534T C13072T T28144C A29878G A29882G A29887G A29890G A29893G A29896G AAAAA29899-

EPI_ISL_408489 MT066175
 2020-01-31 2020-02-09
 Taiwan SARS-CoV-2/NTU01/TWN/human/2020
 C8782T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_408666 LC522974
 2020-01-31 2020-02-10
 Japan 2019-nCoV/Japan/TY/WK-501/2020
 ATT1- C2662T C8782T T28144C C29095T AAAAAAAAAAAAAAAAAAAAAA29882-

EPI_ISL_408667 LC522975
 2020-01-31 2020-02-10
 Japan 2019-nCoV/Japan/TY/WK-521/2020
 ATT1- C2662T C8782T T28144C C29095T G29705T AAAAAAAAAAAAAAAAAAAAAA29882-

EPI_ISL_408670 MT039887
 2020-01-31 2020-02-10
 United States 2019-nCoV/USA-WI1/2020
 C17373T ATT20298- AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_410546
 2020-01-31 2020-02-17
 Italy hCoV-19/Italy/INMI1-cs/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAG1- G11083T G26144T TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_412871
 2020-01-31 2020-02-28
 South Korea hCoV-19/South Korea/KCDC07/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCAC1- C1779T T4402C G5062T C8782T C15017T T28144C AAAAAAAAAAAAAAAA29888-

EPI_ISL_413523 MT050493
 2020-01-31 2020-02-11
 India SARS-CoV-2/human/IND/166/2020
 ATTAAAGGTTTATACCTTCC1- A1691G C6501T C8782T C16877T C24351T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_413857 NMDC60013024-01
 2020-01-31 2020-03-09
 China hCoV-19/Guangdong/2020XN4448-P0002/2020
 A1430G G5155A G16535T C18568T A19705G

EPI_ISL_416390
 2020-01-31 2020-03-20
 China hCoV-19/Shanghai/SH0094/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C3885A G6513T G20335A G29449T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_428488
 2020-01-31 2020-04-21
 Taiwan hCoV-19/Taiwan/8/2020
 ATTA1- C8299T A28792T AAAAAAAAAAAA29892-

EPI_ISL_428489
 2020-01-31 2020-04-21
 Taiwan hCoV-19/Taiwan/5/2020
 A4T C8299T A28792T AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_447913
 2020-01-31 2020-05-19
 Thailand hCoV-19/Thailand/Bangkok_238/2020
 C2942T G4390T C8782T T28144C AAAAAAAAAAAA29892-

EPI_ISL_450410 MT365030
 2020-01-31 2020-04-17
 China SARS-CoV-2/human/HKG/HKU-913a/2020
 A17423G A20667G C28854T AAAAAAAAAAAA29892-

EPI_ISL_451325
 2020-01-31 2020-05-24
 China hCoV-19/China/SC-MY-059/2020
 C1342T C10507T C18060T T28144C

EPI_ISL_451344
 2020-01-31 2020-05-24
 China hCoV-19/China/SC-NJ-095/2020
 

EPI_ISL_451374
 2020-01-31 2020-05-24
 China hCoV-19/China/SC-WCH-082/2020
 A13175G

EPI_ISL_451397
 2020-01-31 2020-05-24
 China hCoV-19/China/SC-YA-088/2020
 CC18109-T

EPI_ISL_451398
 2020-01-31 2020-05-24
 China hCoV-19/China/SC-YB-085/2020
 

EPI_ISL_452363
 2020-01-31 2020-05-27
 China hCoV-19/Beijing/DT-WH04/2020
 A2966C T28144C C28253T

EPI_ISL_475997
 2020-01-31 2020-06-25
 Singapore hCoV-19/Singapore/466/2020
 C8782T C19910Y T20880Y C23896Y T28144C G28878A AAAAAAAAAAAA29892-

EPI_ISL_476139
 2020-01-31 2020-06-25
 Sweden hCoV-19/Sweden/20-02114/2020
 C12194T A17376G G26144T

EPI_ISL_497963
 2020-01-31 2020-07-26
 South Korea hCoV-19/Korea/KCDC2062/2020
 ATTAAA1- A26- C28T T4402C G5062T C8782T T28144C C29743T

EPI_ISL_529997
 2020-01-31 2020-09-10
 Spain hCoV-19/Spain/MD-H12-66/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1063T C3037T C14408T A20268G A23403G T24346C G29734C ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

GWHAORL01000001
 2020-01-31 2020-09-11
 China SARS-CoV-2/human/CHN/Beijing-P6.1/2020
 C8782T T28144C

MT077125
 2020-01-31 2020-02-17
 Italy SARS-CoV-2/human/ITA/INMI1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAG1- G11083T G26144T TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

NMDC60013278
 2020-01-31 2020-06-01
 China hCoV-19/Guangzhou/ID101/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C26447G T28144C T28250G A28254- C29095T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

NMDC60013283
 2020-01-31 2020-06-01
 China hCoV-19/Guangzhou/ID103/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A6659G C8782T C10604T A15647G G23856T T28144C G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_411929 MT039890
 2020-01-xx 2020-02-11
 South Korea SNU01
 G2971T C6031T C12115T T15597C C20936T C22224G G25775T G26144T T26354A

EPI_ISL_414511 LC529905
 2020-01-xx 2020-03-04
 Japan TKYE6182_2020
 C15324T C25810G C29303T

EPI_ISL_434560 MT186683
 2020-01-xx 2020-03-12
 China SARS-CoV-2/human/HKG/HK20/2020
 T13929C T21467C G26144T AAAAAAAAAAAAAAA29889-

EPI_ISL_450201 MT270104
 2020-01-xx 2020-03-28
 Germany SARS-CoV-2/human/DEU/BavPat6-ChVir1247/2020
 ATTAAAGGTTTATA1- C241T C3037T G6446A A23403G TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_450202 MT270105
 2020-01-xx 2020-03-28
 Germany SARS-CoV-2/human/DEU/BavPat5-ChVir1248/2020
 ATTAAAGGTT1- C241T C3037T G6446A A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_450205 MT270108
 2020-01-xx 2020-03-28
 Germany SARS-CoV-2/human/DEU/BavPat9-ChVir1433/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6446A C22323T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_450206 MT270109
 2020-01-xx 2020-03-28
 Germany SARS-CoV-2/human/DEU/BavPat11-ChVir1459/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6446A A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_407988
 2020-02-01 2020-02-07
 Singapore hCoV-19/Singapore/3/2020
 AT1- G11083T TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_409024 EPI_ISL_412030
 2020-02-01 2020-02-24
 China hCoV-19/Hong Kong/VB20026565-2/2020
 ATTAAAGGTTTATACCTTCCCA1- G11083T G29841A ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_412872
 2020-02-01 2020-02-28
 South Korea hCoV-19/South Korea/KCDC12/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCAC1- ACAAAAAAAAAAAAAA29869-

EPI_ISL_413861 NMDC60013028-01
 2020-02-01 2020-03-09
 China hCoV-19/Guangdong/GD2020080-P0010/2020
 A11782G C12473T

EPI_ISL_413863 NMDC60013030-01
 2020-02-01 2020-03-09
 China hCoV-19/Guangdong/GD2020087-P0008/2020
 C22787G G26144T

EPI_ISL_416336
 2020-02-01 2020-03-20
 China hCoV-19/Shanghai/SH0027/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- T49A C14676T C28826T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416338
 2020-02-01 2020-03-20
 China hCoV-19/Shanghai/SH0029/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C8782T C24034T T26729C G28077C T28144C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416341
 2020-02-01 2020-03-20
 China hCoV-19/Shanghai/SH0032/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C8782T C24034T T26729C G28077C T28144C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416361
 2020-02-01 2020-03-20
 China hCoV-19/Shanghai/SH0053/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C15324T G20383T C29303T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416367
 2020-02-01 2020-03-20
 China hCoV-19/Shanghai/SH0060/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A9437T C12473T C25047T A27669T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416370
 2020-02-01 2020-03-20
 China hCoV-19/Shanghai/SH0067/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C9442T T25209C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416372
 2020-02-01 2020-03-20
 China hCoV-19/Shanghai/SH0069/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A4550G C8782T T9477A T28144C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416379
 2020-02-01 2020-03-20
 China hCoV-19/Shanghai/SH0076/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C9442T T25209C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416381
 2020-02-01 2020-03-20
 China hCoV-19/Shanghai/SH0079/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C8782T C24034T T26729C G28077C T28144C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416387
 2020-02-01 2020-03-20
 China hCoV-19/Shanghai/SH0088/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C15324T T24405G C29303T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_418809
 2020-02-01 2020-03-30
 Japan hCoV-19/Japan/UT-NCGM02/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C2662T C3792T C8782T T28144C C29095T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_429085 CNA0013938
 2020-02-01 2020-04-23
 China Guangzhou/GZMU0033/2020
 C21707T AAAAAAAAAAAA29892-

EPI_ISL_429086 CNA0013939
 2020-02-01 2020-04-23
 China Guangzhou/GZMU0034/2020
 T2A AA4CT C21707T

EPI_ISL_429088 CNA0013940
 2020-02-01 2020-04-23
 China Guangzhou/GZMU0035/2020
 C21707T AAAAAAAAAAAA29892-

EPI_ISL_429104 CNA0013956
 2020-02-01 2020-04-23
 China Guangzhou/GZMU0036/2020
 AT1CC A4G C21707T A29866G G29868A C29870A AA29872TT AAAA29876TTTT AA29881GT AAAA29884GTGC

EPI_ISL_429854
 2020-02-01 2020-04-24
 China hCoV-19/Lishui/LS557/2020
 ATTAAAGGTTT1- C8782T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_437624 MT447154
 2020-02-01 2020-05-01
 Thailand SARS-CoV-2/human/THA/SI200893-NT/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C1150T G26144T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_447918
 2020-02-01 2020-05-19
 Thailand hCoV-19/Thailand/Bangkok_580/2020
 A8388T C8782T T8987C T28144C C29095T AAAA29900-

EPI_ISL_450203 MT270106
 2020-02-01 2020-03-28
 Germany SARS-CoV-2/human/DEU/BavPat7-ChVir1289/2020
 AT1- C241T C3037T G6446A A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_451316
 2020-02-01 2020-05-24
 China hCoV-19/China/SC-GA-065/2020
 C8281T G26144T

EPI_ISL_451322
 2020-02-01 2020-05-24
 China hCoV-19/China/SC-MY-056/2020
 T28144C

EPI_ISL_451327
 2020-02-01 2020-05-24
 China hCoV-19/China/SC-NC-067/2020
 C17373T

EPI_ISL_451333
 2020-02-01 2020-05-24
 China hCoV-19/China/SC-NC-074/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- T28144C C28253T

EPI_ISL_452360
 2020-02-01 2020-05-27
 China hCoV-19/Beijing/DT-WH01/2020
 

EPI_ISL_452362
 2020-02-01 2020-05-27
 China hCoV-19/Beijing/DT-WH03/2020
 T6552G T8022G

EPI_ISL_455466
 2020-02-01 2020-05-30
 China hCoV-19/Yingtan/JX2480/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C2574T T6348C AAAAAAAAAAAA29892-

EPI_ISL_529998
 2020-02-01 2020-09-10
 Spain hCoV-19/Spain/MD-H12-67/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G G29734C ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

GWHAORI01000001
 2020-02-01 2020-09-11
 China SARS-CoV-2/human/CHN/Beijing-P4.2/2020
 G237T C241T G2229A C3037T C14408T T19561A A23403G

EPI_ISL_410719
 2020-02-02 2020-02-18
 Singapore hCoV-19/Singapore/11/2020
 ATTAAAGG1- A13679G C17373T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_411218
 2020-02-02 2020-02-19
 France hCoV-19/France/IDF0571/2020
 C1190T C9438T G11083T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_413697 CNA0013886
 2020-02-02 2020-03-09
 China Weifang/WFCDC0012/2020
 ATTAAAGGTTTAT1- C207T T946C C8782T A11430G T28144C ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_414510 MT121215
 2020-02-02 2020-02-27
 China SARS-CoV-2/human/CHN/SH01/2020
 C6026T C12473T -29904AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

EPI_ISL_416047
 2020-02-02 2020-03-20
 China hCoV-19/Hangzhou/ZJU-06/2020
 AT1CCCCCTTTTCAAGCAGAAGACGGCATACGAGATACGAATTCGTGAC AA4GG -G7GTTCAGACGTGTGCTCTTCCA T10C C3885A C12778T T13270C G29449T

EPI_ISL_416325
 2020-02-02 2020-03-20
 China hCoV-19/Shanghai/SH0012/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G21853A G26144T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416330
 2020-02-02 2020-03-20
 China hCoV-19/Shanghai/SH0021/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C8782T C15480T G25767T T28144C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416335
 2020-02-02 2020-03-20
 China hCoV-19/Shanghai/SH0026/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C207T T946C C6363T C8782T A11430G T28144C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416340
 2020-02-02 2020-03-20
 China hCoV-19/Shanghai/SH0031/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C3768T A16474G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416362
 2020-02-02 2020-03-20
 China hCoV-19/Shanghai/SH0054/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G28845T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416397
 2020-02-02 2020-03-20
 China hCoV-19/Shanghai/SH0107/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- G61T C20692T C23533T C26326T G28233A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416398
 2020-02-02 2020-03-20
 China hCoV-19/Shanghai/SH0109/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C5239T C17373T C28830A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416401
 2020-02-02 2020-03-20
 China hCoV-19/Shanghai/SH0114/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C20692T C25006T G28233A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416403
 2020-02-02 2020-03-20
 China hCoV-19/Shanghai/SH0117/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- T54A C8782T T9370G T28144C G28878A G29742A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416405
 2020-02-02 2020-03-20
 China hCoV-19/Shanghai/SH0121/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C11962T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416409
 2020-02-02 2020-03-20
 China hCoV-19/Shanghai/SH0128/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A1566C C8782T C24034T T26729C G28077C T28144C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_421257
 2020-02-02 2020-04-07
 China hCoV-19/Shangrao/JX1215/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C21707T AAAAAAAAAAAA29892-

EPI_ISL_426164
 2020-02-02 2020-04-15
 South Korea hCoV-19/Korea/KCDC2004/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1-

EPI_ISL_426168
 2020-02-02 2020-04-15
 South Korea hCoV-19/Korea/KCDC2006/2020
 ATTAAAGGTTTATAC1- C16T C4276T T4402C G5062T C8782T T28144C ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_430728
 2020-02-02 2020-04-27
 China hCoV-19/Beijing/BJ492/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C16293T T28144C C29095T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_450411 MT365031
 2020-02-02 2020-04-17
 China SARS-CoV-2/human/HKG/HKU-915a/2020
 A17423G C28854T AAAAAAAAAAAA29892-

EPI_ISL_451321
 2020-02-02 2020-05-24
 China hCoV-19/China/SC-MY-055/2020
 A28145C

EPI_ISL_451324
 2020-02-02 2020-05-24
 China hCoV-19/China/SC-MY-058/2020
 T13243C CC18109-T

EPI_ISL_451326
 2020-02-02 2020-05-24
 China hCoV-19/China/SC-MY-060/2020
 G3013T T13243C G27261A T27356C

EPI_ISL_451328
 2020-02-02 2020-05-24
 China hCoV-19/China/SC-NC-068/2020
 C3717T A16824G C17373T

EPI_ISL_451331
 2020-02-02 2020-05-24
 China hCoV-19/China/SC-NC-072/2020
 C3717T A16824G C17373T

EPI_ISL_451383
 2020-02-02 2020-05-24
 China hCoV-19/China/SC-WCH3-254/2020
 C173T A3517G C8782T C21711T C23893T G25909A T28144C G28878A C29555T C29640T G29742A

EPI_ISL_451386
 2020-02-02 2020-05-24
 China hCoV-19/China/SC-WCH4-284/2020
 T14451G

EPI_ISL_529999
 2020-02-02 2020-09-10
 Spain hCoV-19/Spain/MD-H12-68/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6286T C14408T G14863A C19164T A20268G A23403G ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_536435
 2020-02-02 2020-09-16
 Singapore hCoV-19/Singapore/894/2020
 A1- C1780T C8782T T28144C C29095T AAAAAAAAAAAA29892-

NMDC60013279
 2020-02-02 2020-06-01
 China hCoV-19/Guangzhou/ID099/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C26447G T28144C T28250G A28254- G29041C C29095T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_407976
 2020-02-03 2020-02-07
 Belgium hCoV-19/Belgium/GHB-03021/2020
 C8782T T28144C A29863T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_410535
 2020-02-03 2020-02-17
 Singapore hCoV-19/Singapore/4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C8782T T28144C G28878A CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_410714
 2020-02-03 2020-02-18
 Singapore hCoV-19/Singapore/8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C21859T G26144T AGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29797-

EPI_ISL_416339
 2020-02-03 2020-03-20
 China hCoV-19/Shanghai/SH0030/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C4655T C8782T G9890T G20527T T28144C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416425
 2020-02-03 2020-03-21
 China hCoV-19/Hangzhou/ZJU-07/2020
 -T2AGAGTGCTTAG GG7AT -10TTAATCAGCACGAAGTTCTACTTGCACCA T1405C G9802T A19945G C25267T C27615G

EPI_ISL_418990
 2020-02-03 2020-04-01
 China hCoV-19/Hangzhou/ZJU-010/2020
 ATTAAAGGTTTATACCTTC1- C16114T G22205C -29904AAAAAAAAAAAAAAAAAA

EPI_ISL_421250
 2020-02-03 2020-04-07
 China hCoV-19/Shangrao/JX1177/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C1912T G6266A C12896T C28854T T28867C AAAAAAAAAAAA29892-

EPI_ISL_421251
 2020-02-03 2020-04-07
 China hCoV-19/Shangrao/JX1176/2020
 ATTAAAGGTTTATACCTTCCCAGG1- G845T C1912T A3375C C12896T C28854T T28867C AAAAAAAAAAAA29892-

EPI_ISL_421254
 2020-02-03 2020-04-07
 China hCoV-19/Shangrao/JX1178/2020
 ATTAAAGGTTTATACCTTCCCAGG1- A13555T AAAAAAAAAAAA29892-

EPI_ISL_437617 MT447161
 2020-02-03 2020-05-01
 Thailand SARS-CoV-2/human/THA/SI201712-NT/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- G26144T C29774T GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_450204 MT270107
 2020-02-03 2020-03-28
 Germany SARS-CoV-2/human/DEU/BavPat8-ChVir1356/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6446A A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_451300
 2020-02-03 2020-05-24
 Italy hCoV-19/Italy/INMI1-N/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- A2269T G11083T G26144T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_451301
 2020-02-03 2020-05-24
 Italy hCoV-19/Italy/INMI2-B/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- G11083T G26144T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_451317
 2020-02-03 2020-05-24
 China hCoV-19/China/SC-GA-066/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- G626T A23469T T28144C T28157C

EPI_ISL_451341
 2020-02-03 2020-05-24
 China hCoV-19/China/SC-NJ-092/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- A1087- T13243C

EPI_ISL_451357
 2020-02-03 2020-05-24
 China hCoV-19/China/SC-PHCC1-036/2020
 G1495T C13821T C18377T G29737A

EPI_ISL_451358
 2020-02-03 2020-05-24
 China hCoV-19/China/SC-PHCC2-038/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- T13243C TG18987-

EPI_ISL_451372
 2020-02-03 2020-05-24
 China hCoV-19/China/SC-PHCC2-052/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- T11566A T17407C CC18109-T

EPI_ISL_451373
 2020-02-03 2020-05-24
 China hCoV-19/China/SC-WCH-081/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- CC18109-T

EPI_ISL_451385
 2020-02-03 2020-05-24
 China hCoV-19/China/SC-WCH3-259/2020
 

EPI_ISL_451394
 2020-02-03 2020-05-24
 China hCoV-19/China/SC-WCH4-293/2020
 C173T C23893T T28144C G28878A C29640T G29742A

EPI_ISL_454919
 2020-02-03 2020-05-29
 China hCoV-19/Wuhan/HB-WH1-143/2020
 T28144C

EPI_ISL_455463
 2020-02-03 2020-05-30
 China hCoV-19/Jiujiang/JX490/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C9967T AAAAAAAAAAAA29892-

EPI_ISL_489996
 2020-02-03 2020-07-14
 Saudi Arabia hCoV-19/Saudi Arabia/477/2020
 C241T T826C C1218T C3037T C5173T A8031G C14408T A15257G C18877T A23403G G25563T C26735T

EPI_ISL_497783
 2020-02-03 2020-07-25
 China hCoV-19/Hong Kong/HKU-200723-016/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T13929C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530000
 2020-02-03 2020-09-10
 Spain hCoV-19/Spain/MD-H12-69/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T10012C C14408T A20268G A23403G ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

MT755883
 2020-02-03 2020-07-14
 Saudi Arabia SARS-CoV-2/human/SAU/477/2020
 C241T T826C C1218T C3037T C5173T A8031G C14408T A15257G C18877T A23403G G25563T C26735T

EPI_ISL_410715
 2020-02-04 2020-02-18
 Singapore hCoV-19/Singapore/9/2020
 C10138T G26144T AAAAAAAAAAAA29892-

EPI_ISL_410716
 2020-02-04 2020-02-18
 Singapore hCoV-19/Singapore/10/2020
 AT1- C10138T G26144T AAAAAAAAAAAA29892-

EPI_ISL_413711 CNA0013885
 2020-02-04 2020-03-09
 China Weifang/WFCDC0014/2020
 ATTAAAGGTT1- C6501T C8782T C16887T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_413761 CNA0013877
 2020-02-04 2020-03-09
 China Weifang/WFCDC0026/2020
 ATTAAAGGTTTAT1- C207T T946C C8782T A11430G T28144C ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_416337
 2020-02-04 2020-03-20
 China hCoV-19/Shanghai/SH0028/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- A14823T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416342
 2020-02-04 2020-03-20
 China hCoV-19/Shanghai/SH0033/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A871G A3027G C3787T G11083T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416353
 2020-02-04 2020-03-20
 China hCoV-19/Shanghai/SH0044/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G2293T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416355
 2020-02-04 2020-03-20
 China hCoV-19/Shanghai/SH0047/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C3885A C12778T T13270C A23670G T28340C G29449T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416886
 2020-02-04 2020-03-23
 Malaysia hCoV-19/Malaysia/MKAK-CL-2020-6430/2020
 ATTAAAGGTTTAT1- T6025C C8782T C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_417518 MT374101
 2020-02-04 2020-02-04
 Taiwan SARS-CoV-2/human/TWN/CGMH-CGU-02/2020
 C8782T A16841G C21707T C24213T ACTTGAACTGCAAGATCATAATGAAACTTGTCACGCCTAAACGAACATGAAATTTCTTGTTTTCTTAGGAATCATCACAACTGTAGCTGCATTTCACCAAGAATGTAGTTTACAGTCATGTACTCAACATCAACCATATGTAGTTGATGACCCGTGTCCTATTCACTTCTATTCTAAATGGTATATTAGAGTAGGAGCTAGAAAATCAGCACCTTTAATTGAATTGTGCGTGGATGAGGCTGGTTCTAAATCACCCATTCAGTACATCGATATCGGTAATTATACAGTTTCCTGTTTACCTTTTACAATTAATTGCCAGGAACCTAAATTGGGTAGTCTTGTAGTGCGTTGTTCGTTCTATGAAGACTTTTTAGAGTATCAT27848-

EPI_ISL_418991
 2020-02-04 2020-04-01
 China hCoV-19/Hangzhou/ZJU-011/2020
 ATTAAAGGTTTATACCTTC1- T22303G TTG27775CGA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_426166
 2020-02-04 2020-04-15
 South Korea hCoV-19/Korea/KCDC2005/2020
 ATTAAAGGTTTATACC1- AAAAAAAAAAAAAAAA29888-

EPI_ISL_447919
 2020-02-04 2020-05-19
 Thailand hCoV-19/Thailand/Samut prakarn_840/2020
 C13665T A23403G G26144T C26895T C29774T AAAAAAAAAAAA29892-

EPI_ISL_451346
 2020-02-04 2020-05-24
 China hCoV-19/China/SC-PHCC1-025/2020
 C8782T T28144C C29095T C29586T

EPI_ISL_451370
 2020-02-04 2020-05-24
 China hCoV-19/China/SC-PHCC2-050/2020
 C8782T T28144C C29095T C29586T

EPI_ISL_451399
 2020-02-04 2020-05-24
 China hCoV-19/China/SC-YB-086/2020
 TAAAA17201- C17373T T25382C

EPI_ISL_452357
 2020-02-04 2020-05-27
 China hCoV-19/Beijing/DT-WH02/2020
 G15327T C18029T G24812T A28305C G29742T

EPI_ISL_454981
 2020-02-04 2020-05-29
 China hCoV-19/Wuhan/HB-WH5-240/2020
 

EPI_ISL_455391
 2020-02-04 2020-05-29
 China hCoV-19/Wuhan/HB-WH5-228/2020
 TG14865- G20623T A20636- G22343C

EPI_ISL_489997
 2020-02-04 2020-07-14
 Saudi Arabia hCoV-19/Saudi Arabia/492/2020
 C241T C3037T A5277G C14408T C18877T A23403G G23426T T24295C G25563T C26735T

EPI_ISL_530001
 2020-02-04 2020-09-10
 Spain hCoV-19/Spain/MD-H12-70/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1063T C3037T C14408T A20268G A23403G C25427T G29734C ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

MT755884
 2020-02-04 2020-07-14
 Saudi Arabia SARS-CoV-2/human/SAU/492/2020
 C241T C3037T A5277G C14408T C18877T A23403G G23426T T24295C G25563T C26735T

EPI_ISL_410218 MT066176
 2020-02-05 2020-02-13
 Taiwan SARS-CoV-2/NTU02/TWN/human/2020
 A9034G C9491T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_410717 MT050416
 2020-02-05 2020-02-18
 Australia SARS-CoV-2/human/AUS/QLD03/2020_FSS917
 ATTAA1- C8782T T18603C T28144C G28878A G29742A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_410718
 2020-02-05 2020-02-18
 Australia hCoV-19/Australia/QLD04/2020
 ATTAA1- C8782T T28144C G28878A G29742A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_412966 MT123290
 2020-02-05 2020-02-27
 China SARS-CoV-2/human/CHN/IQTC01/2020
 A1C A4T C15324T C29303T AA29884GG A29887G AAAAAAAAAAAAAAA29889-

EPI_ISL_413729 CNA0013884
 2020-02-05 2020-03-09
 China Weifang/WFCDC0015/2020
 ATTAAAGGTTT1- C8782T T28144C AAAAAAAAAAAAA29891-

EPI_ISL_413746 CNA0013883
 2020-02-05 2020-03-09
 China Weifang/WFCDC0016/2020
 ATTAAAGGTTTAT1- C8782T T28144C ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_413791 CNA0013876
 2020-02-05 2020-03-09
 China Weifang/WFCDC0028/2020
 ATTAAAGGTTT1- C207T T946C C8782T A11430G A16474G C25000A T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_414040
 2020-02-05 2020-03-11
 United Kingdom hCoV-19/England/200641094/2020
 ATG1605- A24495R A28052W

EPI_ISL_416376
 2020-02-05 2020-03-20
 China hCoV-19/Shanghai/SH0073/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_421240
 2020-02-05 2020-04-07
 China hCoV-19/Shangrao/JX1948/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C8782T T28144C AAAAAAAAAAAA29892-

EPI_ISL_426169
 2020-02-05 2020-04-15
 South Korea hCoV-19/Korea/KCDC2007/2020
 ATTAAAGGTTTATAC1-

EPI_ISL_426171
 2020-02-05 2020-04-15
 South Korea hCoV-19/Korea/KCDC2008/2020
 ATT1- T4402C G5062T C8782T C11572T T28144C AAAAAAA29897-

EPI_ISL_426180
 2020-02-05 2020-04-15
 South Korea hCoV-19/Korea/KCDC2010/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCA1- T4402C G5062T C8782T C17474T T28144C AAAAAAAAAAAAAAAA29888-

EPI_ISL_429080 CNA0013933
 2020-02-05 2020-04-23
 China Guangzhou/GZMU0019/2020
 C241T C3037T A23403G AAAAAAAAAAAA29892-

EPI_ISL_429082 CNA0013935
 2020-02-05 2020-04-23
 China Guangzhou/GZMU0023/2020
 C8782T T28144C AAAAAAAAAAAA29892-

EPI_ISL_429083 CNA0013936
 2020-02-05 2020-04-23
 China Guangzhou/GZMU0024/2020
 C8782T T28144C AAAAAAAAAAAA29892-

EPI_ISL_429084 CNA0013937
 2020-02-05 2020-04-23
 China Guangzhou/GZMU0025/2020
 C8782T T28144C AAAAAAAAAAAA29892-

EPI_ISL_444273 MT446312
 2020-02-05 2020-05-08
 China SARS-CoV-2/human/Guangzhou/IQTC05/2020
 AT1- G6819T T6996C C14235T C17373T G29527A AAAAAAAAAAAAAAAAAAAAAA29882-

EPI_ISL_451329
 2020-02-05 2020-05-24
 China hCoV-19/China/SC-NC-069/2020
 C3717T A16824G C17373T T27645C

EPI_ISL_451338
 2020-02-05 2020-05-24
 China hCoV-19/China/SC-NJ-089/2020
 

EPI_ISL_452364
 2020-02-05 2020-05-27
 China hCoV-19/Beijing/DT-BJ04/2020
 G1397A T6552G T8022G T20891G G24812T A28305C G29742T

EPI_ISL_455462
 2020-02-05 2020-05-30
 China hCoV-19/Fuzhou/JX2012/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C1342T C8782T C16466T C18060T T28144C AAAAAAAAAAAA29892-

EPI_ISL_455464
 2020-02-05 2020-05-30
 China hCoV-19/Fuzhou/JX2009/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C1342T C8782T C18060T G23868C T28144C AAAAAAAAAAAA29892-

EPI_ISL_530002
 2020-02-05 2020-09-10
 Spain hCoV-19/Spain/MD-H12-71/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1063T C3037T C14408T A20268G A23403G C25427T G29734C ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

GWHAORJ01000001
 2020-02-05 2020-09-11
 China SARS-CoV-2/human/CHN/Beijing-P5.1/2020
 T4008C T28031C

NMDC60013142-01
 2020-02-05 2020-04-25
 China ICDC-DT005
 ATTAAAGGTTTAT1- G25064A G26144T G28077T A29869T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_410536
 2020-02-06 2020-02-17
 Singapore hCoV-19/Singapore/5/2020
 AT1- C10138T G26144T TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_411954 MT106052
 2020-02-06 2020-02-22
 United States 2019-nCoV/USA-CA7/2020
 C8782T T28144C G28878A G29742A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_412873
 2020-02-06 2020-02-28
 South Korea hCoV-19/South Korea/KCDC24/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCAC1- T3086C C6255T C8782T G11083T G17122A T28144C A29871G AAAAAAAAAAAAAAAA29888-

EPI_ISL_413017
 2020-02-06 2020-03-03
 South Korea hCoV-19/South Korea/KUMC01/2020
 T4402C G5062T G26144T G26640T T26677C T28144C

EPI_ISL_413018
 2020-02-06 2020-03-03
 South Korea hCoV-19/South Korea/KUMC02/2020
 ATTAAAGGTTTA1- A2707G G26144T G26640T T26677C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_416334
 2020-02-06 2020-03-20
 China hCoV-19/Shanghai/SH0025/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1555A C3037T A9238G A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416907
 2020-02-06 2020-03-23
 Malaysia hCoV-19/Malaysia/MKAK-CL-2020-7554/2020
 ATTAAAGGTTTATA1- C1758T C10604T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_422428
 2020-02-06 2020-04-10
 Singapore hCoV-19/Singapore/35/2020
 ATTA1- C5526Y C17074Y AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_428458 NMDC60013121-01
 2020-02-06 2020-04-21
 China hCoV-19/Guangdong/20SF2546/2020
 C8782T C17502T T28144C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_451340
 2020-02-06 2020-05-24
 China hCoV-19/China/SC-NJ-091/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- AA3174TT CT3177AG AA3180TT T13243C A18114G

EPI_ISL_454964
 2020-02-06 2020-05-29
 China hCoV-19/Wuhan/HB-WH4-216/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- C28093T C29303T

EPI_ISL_455461
 2020-02-06 2020-05-30
 China hCoV-19/Yichun/JX2391/2020
 ATTAAAGGTTTATACCTTCCCAGG1- T76A T78G C482T C6543T C8782T T14565A C14567G G26467T T28144C AAAAAAAAAAAA29892-

EPI_ISL_457726
 2020-02-06 2020-06-02
 Taiwan hCoV-19/Taiwan/TSGH-35/2020
 

EPI_ISL_457730
 2020-02-06 2020-06-02
 Taiwan hCoV-19/Taiwan/TSGH-36/2020
 G11083T G26144T -29904AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAACTAATAAAGAAACATACTGGAACATCCC

EPI_ISL_497964
 2020-02-06 2020-07-26
 South Korea hCoV-19/Korea/KCDC2063/2020
 A1- A26- T3086C C6255T C8782T G11083T G17122A T28144C

EPI_ISL_497965
 2020-02-06 2020-07-26
 South Korea hCoV-19/Korea/KCDC2064/2020
 A1- AC27- T3086C C6255T C8782T G11083T G17122A T28144C

EPI_ISL_530003
 2020-02-06 2020-09-10
 Spain hCoV-19/Spain/MD-H12-72/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G A27307G ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

GWHAORH01000001
 2020-02-06 2020-09-11
 China SARS-CoV-2/human/CHN/Beijing-P4.1/2020
 C337T C3429T C6268T C18512T

EPI_ISL_411951 MT093571
 2020-02-07 2020-02-20
 Sweden SARS-CoV-2/human/SWE/01/2020
 G2717A A9274G CT13225GC A17376G T23952G G26144T AAAAAAAAAAAAAAAAA29887-

EPI_ISL_412982 NMDC60013097-01
 2020-02-07 2020-03-02
 China BetaCoV/Wuhan/HBCDC-HB-06/2020
 ATTAAAGGTTTATAC1- G5657A C8782T A23403G A25725G T28144C CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_413748 CNA0013882
 2020-02-07 2020-03-09
 China Weifang/WFCDC0018/2020
 ATTAAAGGTTTATA1- C8782T T28144C ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_413749 CNA0013881
 2020-02-07 2020-03-09
 China Weifang/WFCDC0019/2020
 ATTAAAGGTTT1- C8782T C14768T A17805T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_413750 CNA0013880
 2020-02-07 2020-03-09
 China Weifang/WFCDC0020/2020
 A1- C8782T T28144C AAAAAAAAAAAAAAAAAAAA29884-

EPI_ISL_413751 CNA0013879
 2020-02-07 2020-03-09
 China Weifang/WFCDC0021/2020
 ATTAAAGGTTTA1- C8782T TTT27792- T28144C ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_414043
 2020-02-07 2020-03-11
 United Kingdom hCoV-19/England/200690306/2020
 ATG1605- C15237Y

EPI_ISL_416373
 2020-02-07 2020-03-20
 China hCoV-19/Shanghai/SH0070/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- G1397A G1805A G11083T T28688C C29670T G29742T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416377
 2020-02-07 2020-03-20
 China hCoV-19/Shanghai/SH0074/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C8782T T28144C C29095T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_426173
 2020-02-07 2020-04-15
 South Korea hCoV-19/Korea/KCDC2009/2020
 ATTAAAGGTTTATAC1- C16T T4402C G5062T C8782T C11572T T28144C A29869G AAAAAAAAAAAAAAAA29888-

EPI_ISL_426629
 2020-02-07 2020-04-17
 Taiwan hCoV-19/Taiwan/TSGH-01/2020
 G11083T T19355G A24762T A24788T A24818T C25339T G26144T

EPI_ISL_429074 CNA0013927
 2020-02-07 2020-04-23
 China Guangzhou/GZMU0003/2020
 C21707T AAAAAAAAAAAA29892-

EPI_ISL_429075 CNA0013928
 2020-02-07 2020-04-23
 China Guangzhou/GZMU0008/2020
 C8782T T28144C AAAAAAAAAAAA29892-

EPI_ISL_429077 CNA0013930
 2020-02-07 2020-04-23
 China Guangzhou/GZMU0010/2020
 C21707T AAAAAAAAAAAA29892-

EPI_ISL_429078 CNA0013931
 2020-02-07 2020-04-23
 China Guangzhou/GZMU0013/2020
 C21707T T29867C

EPI_ISL_430740
 2020-02-07 2020-04-27
 China hCoV-19/Beijing/BJ710/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C25460T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_437616 MT447162
 2020-02-07 2020-05-01
 Thailand SARS-CoV-2/human/THA/SI202205-NT/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C8782T G17814T T28144C C29095T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_450207 MT270110
 2020-02-07 2020-03-28
 Germany SARS-CoV-2/human/DEU/BavPat10-ChVir1482/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6446A A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_451356
 2020-02-07 2020-05-24
 China hCoV-19/China/SC-PHCC1-035/2020
 C829T G26144T

EPI_ISL_455385
 2020-02-07 2020-05-29
 China hCoV-19/Wuhan/HB-WH4-193/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- C11050A AG14142- TG14865- C25624T

EPI_ISL_493421
 2020-02-07 2020-07-21
 Singapore hCoV-19/Singapore/661/2020
 ATTA1- C17373T AATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29805-

EPI_ISL_530004
 2020-02-07 2020-09-10
 Spain hCoV-19/Spain/MD-H12-73/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G A27307G ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_410486
 2020-02-08 2020-02-14
 France hCoV-19/France/RA739/2020
 ATG1605- AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_412983 NMDC60013098-01
 2020-02-08 2020-03-02
 China BetaCoV/Tianmen/HBCDC-HB-07/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTT1- A3175G G3179A C8782T C14422T C14585T G23405C T28144C C28315T T29680K AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_413809 CNA0013893
 2020-02-08 2020-03-09
 China Weifang/WFCDC0029/2020
 ATTAAAGGTTTAT1- C8782T G18686T T28144C C29095T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_414041
 2020-02-08 2020-03-11
 United Kingdom hCoV-19/England/200690245/2020
 ATG1605- C28253Y

EPI_ISL_414042
 2020-02-08 2020-03-11
 United Kingdom hCoV-19/England/200690300/2020
 ATG1605- A11002M

EPI_ISL_414044
 2020-02-08 2020-03-11
 United Kingdom hCoV-19/England/200690756/2020
 ATG1605- C6638Y G13507R

EPI_ISL_416363
 2020-02-08 2020-03-20
 China hCoV-19/Shanghai/SH0055/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C15324T C29303T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416382
 2020-02-08 2020-03-20
 China hCoV-19/Shanghai/SH0080/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- G1397A C2570T C9333T T11032C G11083T C12073T C17502T T28688C G29742T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416415 MT450924
 2020-02-08 2020-03-20
 Australia SARS-CoV-2/human/AUS/VIC07/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C8782T C10038T T28144C G28878A G29742A

EPI_ISL_417187
 2020-02-08 2020-03-24
 China hCoV-19/Hong Kong/HKPU29_0102/2020
 C9962T T13929C C14724T T21584G G26144T

EPI_ISL_417188
 2020-02-08 2020-03-24
 China hCoV-19/Hong Kong/HKPU30_2901/2020
 C9962T T13929C C14724T T21584G G26144T

EPI_ISL_421258
 2020-02-08 2020-04-07
 China hCoV-19/Shangrao/JX1974/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C7938G C11750T C21707T AAAAAAAAAAAA29892-

EPI_ISL_429089 CNA0013941
 2020-02-08 2020-04-23
 China Guangzhou/GZMU0037/2020
 C241T C3037T A23403G AAAAAAAAAAAA29892-

EPI_ISL_429090 CNA0013942
 2020-02-08 2020-04-23
 China Guangzhou/GZMU0039/2020
 C8782T T28144C AAAAAAAAAAAA29892-

EPI_ISL_429091 CNA0013943
 2020-02-08 2020-04-23
 China Guangzhou/GZMU0041/2020
 C8782T T28144C A29882C AAAAAAAAAAAA29892-

EPI_ISL_429092 CNA0013944
 2020-02-08 2020-04-23
 China Guangzhou/GZMU0045/2020
 C8782T T28144C AAAAAAAAAAAA29892-

EPI_ISL_429093 CNA0013945
 2020-02-08 2020-04-23
 China Guangzhou/GZMU0046/2020
 C8782T T28144C AAAAAAAAAAAA29892-

EPI_ISL_429094 CNA0013946
 2020-02-08 2020-04-23
 China Guangzhou/GZMU0049/2020
 C8782T C26447G T28144C T28250G C29095T

EPI_ISL_429095 CNA0013947
 2020-02-08 2020-04-23
 China Guangzhou/GZMU0050/2020
 ATT1GAC G8A TT10CC C8782T C26447G T28144C T28250G C29095T

EPI_ISL_430724
 2020-02-08 2020-04-27
 China hCoV-19/Beijing/BJ752/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C14198T C16293T T28144C C29095T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_435134
 2020-02-08 2020-05-03
 United Arab Emirates hCoV-19/United Arab Emirates/L4280/2020
 C29303T

EPI_ISL_450208 MT270111
 2020-02-08 2020-03-28
 Germany SARS-CoV-2/human/DEU/BavPat14-ChVir1483/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6446A A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_451076 EPI_ISL_451377
 2020-02-08 2020-05-23
 China hCoV-19/Sichuan/SC-WCH2-006/2020
 T28144C C29640T G29742A

EPI_ISL_451349
 2020-02-08 2020-05-24
 China hCoV-19/China/SC-PHCC1-028/2020
 CC18109-T

EPI_ISL_451350
 2020-02-08 2020-05-24
 China hCoV-19/China/SC-PHCC1-029/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- G1820A C27247T A27300-

EPI_ISL_451352
 2020-02-08 2020-05-24
 China hCoV-19/China/SC-PHCC1-031/2020
 C683T G16197T G16325- TG18987- T21836C

EPI_ISL_451367
 2020-02-08 2020-05-24
 China hCoV-19/China/SC-PHCC2-047/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- T13243C CC18109-T

EPI_ISL_451369
 2020-02-08 2020-05-24
 China hCoV-19/China/SC-PHCC2-049/2020
 G1820A G8013A C18267T C21711T TTT21980- GCTTTA22289- C23741T G28845A G28919A

EPI_ISL_451375
 2020-02-08 2020-05-24
 China hCoV-19/China/SC-WCH1-002/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- AAGATTTTC729- T13243C CC18109-T

EPI_ISL_452359
 2020-02-08 2020-05-27
 China hCoV-19/Beijing/DT-BJ02/2020
 G11405C T21146C G26144T

EPI_ISL_455791
 2020-02-08 2020-06-01
 Malaysia hCoV-19/Malaysia/IMR_WC413/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C1758T C10604T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_457733
 2020-02-08 2020-06-02
 Taiwan hCoV-19/Taiwan/TSGH-37/2020
 A1226C C14573T G18106T C29199T T29360G -29899AACCCCCAAAAAAAAAAAAAAAAAAACAACAAATTAAAAACAAAAAAAAAAAAAAATAAAAAATATAAAGGAGATAAAAATAATATT -29904CA

EPI_ISL_530005
 2020-02-08 2020-09-10
 Spain hCoV-19/Spain/MD-H12-75/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6040T C8683T C8782T G12661A C15738T C26088T G26152A T28144C ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_410537
 2020-02-09 2020-02-17
 Singapore hCoV-19/Singapore/6/2020
 ATTAAAGGTTTATACC1- G27147C TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_412116
 2020-02-09 2020-02-24
 United Kingdom hCoV-19/England/09c/2020
 A2480G C2558T C14805T G26144T

EPI_ISL_413864 NMDC60013031-01
 2020-02-09 2020-03-09
 China hCoV-19/Guangdong/GD2020246-P0028/2020
 C15324T C29303T

EPI_ISL_414527
 2020-02-09 2020-03-13
 China hCoV-19/Hong Kong/VM20002493-2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- T13929C A23717G G26144T G29239T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_416380
 2020-02-09 2020-03-20
 China hCoV-19/Shanghai/SH0077/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G2293T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416393
 2020-02-09 2020-03-20
 China hCoV-19/Shanghai/SH0101/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G2293T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416404
 2020-02-09 2020-03-20
 China hCoV-19/Shanghai/SH0119/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_417185
 2020-02-09 2020-03-24
 China hCoV-19/Hong Kong/HKPU28_3001/2020
 G26144T

EPI_ISL_417193
 2020-02-09 2020-03-24
 China hCoV-19/Hong Kong/HKPU32_0402/2020
 C9962T T13929C C14724T T21584G G21974T G26144T

EPI_ISL_417197
 2020-02-09 2020-03-24
 China hCoV-19/Hong Kong/HKPU34_3001/2020
 C9962T T13929C T21584G G21974T G26144T

EPI_ISL_418815
 2020-02-09 2020-03-31
 China hCoV-19/Hong Kong/HKPU36-0702/2020
 C9962T C12756T T13929C C14724T T21584G G26144T

EPI_ISL_426182
 2020-02-09 2020-04-15
 South Korea hCoV-19/Korea/KCDC2012/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACT1- T490A C1101T G3119A C8782T C24034T T26729C G28077C T28144C AAAAAAAAAAAAAAAA29888-

EPI_ISL_451348
 2020-02-09 2020-05-24
 China hCoV-19/China/SC-PHCC1-027/2020
 T3086C C8782T G11083T G17122A T17407C C21711T C25721T G27261A G27967T T28144C

EPI_ISL_451354
 2020-02-09 2020-05-24
 China hCoV-19/China/SC-PHCC1-033/2020
 T3086C C8782T G11083T T15393G G17122A G27261A G27967T T28144C

EPI_ISL_451371
 2020-02-09 2020-05-24
 China hCoV-19/China/SC-PHCC2-051/2020
 C8782T C19637T T28144C

EPI_ISL_454980
 2020-02-09 2020-05-29
 China hCoV-19/Wuhan/HB-WH5-239/2020
 

EPI_ISL_455460
 2020-02-09 2020-05-30
 China hCoV-19/Yichun/JX2325/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C8782T C25046T T28144C C29095T AAAAAAAAAAAA29892-

EPI_ISL_455792
 2020-02-09 2020-06-01
 Malaysia hCoV-19/Malaysia/IMR_WC458/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C1758T C10604T ATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29850-

EPI_ISL_462293
 2020-02-09 2020-06-08
 Singapore hCoV-19/Singapore/175/2020
 T3412W C9474Y C9603Y G17847R T18339Y C20099Y C21707T A21949M AAAAAAAAAAAA29892-

EPI_ISL_464168
 2020-02-09 2020-06-11
 United Kingdom hCoV-19/England/20072030304/2020
 A2480G C2558T G11083T C14805T G26144T A29478R

EPI_ISL_482680
 2020-02-09 2020-07-05
 Singapore hCoV-19/Singapore/320nan/2020
 G27147C

EPI_ISL_489998
 2020-02-09 2020-07-14
 Saudi Arabia hCoV-19/Saudi Arabia/509/2020
 C241T C829T C3037T G7067A C14408T C18264T C18877T A23403G G25563T C26735T

EPI_ISL_497966
 2020-02-09 2020-07-26
 South Korea hCoV-19/Korea/KCDC2065/2020
 A1G TA3- T490A C1101T G3119A G3661A C8782T C24034T T26729C G28077C T28144C AAAAAAAAAAAAAAA29889-

EPI_ISL_530006
 2020-02-09 2020-09-10
 Spain hCoV-19/Spain/MD-H12-76/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C9603T G11083T G26144T ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

GWHAORB01000001
 2020-02-09 2020-09-11
 China SARS-CoV-2/human/CHN/Beijing-P1.1/2020
 G26144T

MT755885
 2020-02-09 2020-07-14
 Saudi Arabia SARS-CoV-2/human/SAU/509/2020
 C241T C829T C3037T G7067A C14408T C18264T C18877T A23403G G25563T C26735T

NMDC60013280
 2020-02-09 2020-06-01
 China hCoV-19/Guangzhou/ID004/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T G11837T T28144C C29095T C29870A

EPI_ISL_411955 MT106053
 2020-02-10 2020-02-22
 United States 2019-nCoV/USA-CA8/2020
 A24325G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_412968 LC528232
 2020-02-10 2020-02-26
 Japan SARS-CoV-2/Hu/DP/Kng/19-020
 A1TTGCTTA T3G GG7AT TA13AT CT16- G11083T AA29884TT AAAA29888TTTT AA29893GT AAAAAAAA29896GTGC

EPI_ISL_412969 LC528233
 2020-02-10 2020-02-26
 Japan SARS-CoV-2/Hu/DP/Kng/19-027
 ATT1CCC G7ATGCTGTT G11083T C29635T A29876C AAA29878GTG A29883C AAAA29886TGCT AAA29891GGG AAAAAAAAA29895-

EPI_ISL_413753 CNA0013878
 2020-02-10 2020-03-09
 China Weifang/WFCDC0024/2020
 ATTAAAGGTTTA1- A5608G C7164T CTTTACTTG22281- AAAAAAAAA29895-

EPI_ISL_414528
 2020-02-10 2020-03-13
 China hCoV-19/Hong Kong/VM20002507-2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- T13929C G26144T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_418992
 2020-02-10 2020-04-01
 Singapore hCoV-19/Singapore/17/2020
 T21524G C21575T G26144T G29737S AAAAAAAAAAAA29892-

EPI_ISL_419214
 2020-02-10 2020-04-01
 China hCoV-19/Hong Kong/HKPU39-3001/2020
 C9962T T13929C C14724T T21584G G26144T

EPI_ISL_419215
 2020-02-10 2020-04-01
 China hCoV-19/Hong Kong/HKPU40-2801/2020
 C9962T T13929C C14724T T21584G G26144T

EPI_ISL_419216
 2020-02-10 2020-04-01
 China hCoV-19/Hong Kong/HKPU41-0802/2020
 C9962T T13929C C14724T T21584G G21974T G26144T

EPI_ISL_430741
 2020-02-10 2020-04-27
 China hCoV-19/Beijing/BJ782/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C14198T C16293T T28144C C29095T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_451388
 2020-02-10 2020-05-24
 China hCoV-19/China/SC-WCH4-286/2020
 

EPI_ISL_454930
 2020-02-10 2020-05-29
 China hCoV-19/Wuhan/HB-WH2-163/2020
 T18765C T25382C

EPI_ISL_454931
 2020-02-10 2020-05-29
 China hCoV-19/Wuhan/HB-WH2-164/2020
 C8529T C17690T T25382C C25611A

EPI_ISL_455374
 2020-02-10 2020-05-29
 China hCoV-19/Wuhan/HB-WH2-162/2020
 C8529T ATA17609- G18412- C22482T

EPI_ISL_455465
 2020-02-10 2020-05-30
 China hCoV-19/Fuzhou/JX2019/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C2570T A24454G G26144T AAAAAAAAAAAA29892-

EPI_ISL_489999
 2020-02-10 2020-07-14
 Saudi Arabia hCoV-19/Saudi Arabia/518/2020
 C241T C3037T A3790G C14408T C15342T C18877T A23403G G25543T G25563T C26735T

EPI_ISL_490000
 2020-02-10 2020-07-14
 Saudi Arabia hCoV-19/Saudi Arabia/523/2020
 C241T C829T C3037T G7067A G12793T C14408T C18264T C18877T A23403G G25563T C26735T

EPI_ISL_530007
 2020-02-10 2020-09-10
 Spain hCoV-19/Spain/MD-H12-77/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C5339T G7954T G11365T T13447G C14408T C22444T A23403G GGG28881AAC ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

MT755886
 2020-02-10 2020-07-14
 Saudi Arabia SARS-CoV-2/human/SAU/518/2020
 C241T C3037T A3790G C14408T C15342T C18877T A23403G G25543T G25563T C26735T

MT755887
 2020-02-10 2020-07-14
 Saudi Arabia SARS-CoV-2/human/SAU/523/2020
 C241T C829T C3037T G7067A G12793T C14408T C18264T C18877T A23403G G25563T C26735T

EPI_ISL_411956 MT106054
 2020-02-11 2020-02-22
 United States 2019-nCoV/USA-TX1/2020
 C8782T T18603C T18975A A19175C C27925T T28144C C29095T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_416402
 2020-02-11 2020-03-20
 China hCoV-19/Shanghai/SH0115/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C289T C8782T T28144C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416429
 2020-02-11 2020-03-21
 Vietnam hCoV-19/Vietnam/CM99/2020
 C8782T A9259G G21142T C24034T T26729C G28077C T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_419222
 2020-02-11 2020-04-01
 China hCoV-19/Hong Kong/HKPU48-0202/2020
 A22474G G23088A G23090T G26144T

EPI_ISL_451342
 2020-02-11 2020-05-24
 China hCoV-19/China/SC-NJ-093/2020
 C15720T CT27874TC CACG27879TC C27883T T28144C

EPI_ISL_452358
 2020-02-11 2020-05-27
 China hCoV-19/Beijing/DT-BJ01/2020
 

EPI_ISL_452361
 2020-02-11 2020-05-27
 China hCoV-19/Beijing/DT-BJ03/2020
 T8022G G21452A T28144C

EPI_ISL_454932
 2020-02-11 2020-05-29
 China hCoV-19/Wuhan/HB-WH2-166/2020
 T22777C G22793T G22857T

EPI_ISL_454933
 2020-02-11 2020-05-29
 China hCoV-19/Wuhan/HB-WH2-167/2020
 

EPI_ISL_454934
 2020-02-11 2020-05-29
 China hCoV-19/Wuhan/HB-WH2-168/2020
 C8529T

EPI_ISL_454935
 2020-02-11 2020-05-29
 China hCoV-19/Wuhan/HB-WH2-169/2020
 G26239A

EPI_ISL_454936
 2020-02-11 2020-05-29
 China hCoV-19/Wuhan/HB-WH3-170/2020
 G26558T

EPI_ISL_454937
 2020-02-11 2020-05-29
 China hCoV-19/Wuhan/HB-WH3-171/2020
 C22482T

EPI_ISL_455011
 2020-02-11 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM2-279/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- C3768T ATA3951- T13243C C16045T

EPI_ISL_455375
 2020-02-11 2020-05-29
 China hCoV-19/Wuhan/HB-WH2-165/2020
 G18412- T25382C

EPI_ISL_457687 CNA0013981
 2020-02-11 2020-06-02
 China Guangzhou/GZMU0074/2020
 C8782T T28144C AAAAAAAAAAAA29892-

EPI_ISL_457688 CNA0013982
 2020-02-11 2020-06-02
 China Guangzhou/GZMU0075/2020
 C8782T T28144C AAAAAAAAAAAA29892-

EPI_ISL_457689 CNA0013983
 2020-02-11 2020-06-02
 China Guangzhou/GZMU0077/2020
 C8782T T28144C AAAAAAAAAAAA29892-

EPI_ISL_457690 CNA0013984
 2020-02-11 2020-06-02
 China Guangzhou/GZMU0078/2020
 C8782T T28144C AAAAAAAAAAAA29892-

EPI_ISL_457691 CNA0013985
 2020-02-11 2020-06-02
 China Guangzhou/GZMU0079/2020
 G6819T C17373T C28854T G29527A A29878C AAAAAAAAAAAA29892-

EPI_ISL_530008
 2020-02-11 2020-09-10
 Spain hCoV-19/Spain/MD-H12-78/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11071C G11083T C24616T G26144T C29659T ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_414569
 2020-02-12 2020-03-13
 China hCoV-19/Hong Kong/VM20002582-2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- T13929C G25500A G26144T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_426187
 2020-02-12 2020-04-15
 South Korea hCoV-19/Korea/KCDC2014/2020
 ATTAAAGGTTTATACC1- T490A C1101T G3119A C8782T C24034T T26729C C26873T G28077C T28144C A29869G AAAAAAAAAAAAAAAA29888-

EPI_ISL_430444
 2020-02-12 2020-04-27
 Malaysia hCoV-19/Malaysia/IMR_WC627/2020
 ATTAAAGGTTTA1- C1758T C10604T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_451298
 2020-02-12 2020-05-24
 Italy hCoV-19/Italy/INMI1-B1/2020
 ATTAAAGGTTTATACCTTCCCAGG1- A2269T G11083T G26144T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_451355
 2020-02-12 2020-05-24
 China hCoV-19/China/SC-PHCC1-034/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- T28144C

EPI_ISL_451364
 2020-02-12 2020-05-24
 China hCoV-19/China/SC-PHCC2-044/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- TTAAAAT1362- C13019T T13243C C26333T C26340T

EPI_ISL_455386
 2020-02-12 2020-05-29
 China hCoV-19/Wuhan/HB-WH4-198/2020
 TG14865-

EPI_ISL_455467
 2020-02-12 2020-05-30
 China hCoV-19/Yichun/JX2424/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C6543T C8782T T28144C AAAAAAAAAAAA29892-

EPI_ISL_530009
 2020-02-12 2020-09-10
 Spain hCoV-19/Spain/MD-H12-80/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6726T G10072T C14408T C19160T A20268G A23403G G25630T G29734C ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_414380
 2020-02-13 2020-03-12
 Singapore hCoV-19/Singapore/14/2020
 C8782T ACTTGAACTGCAAGATCATAATGAAACTTGTCACGCCTAAACGAACATGAAATTTCTTGTTTTCTTAGGAATCATCACAACTGTAGCTGCATTTCACCAAGAATGTAGTTTACAGTCATGTACTCAACATCAACCATATGTAGTTGATGACCCGTGTCCTATTCACTTCTATTCTAAATGGTATATTAGAGTAGGAGCTAGAAAATCAGCACCTTTAATTGAATTGTGCGTGGATGAGGCTGGTTCTAAATCACCCATTCAGTACATCGATATCGGTAATTATACAGTTTCCTGTTTACCTTTTACAATTAATTGCCAGGAACCTAAATTGGGTAGTCTTGTAGTGCGTTGTTCGTTCTATGAAGACTTTTTAGAGTATCAT27848- TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_416399
 2020-02-13 2020-03-20
 China hCoV-19/Shanghai/SH0110/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C7239T T8916G C16887T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_419000
 2020-02-13 2020-04-01
 Singapore hCoV-19/Singapore/21/2020
 C8782T ACTTGAACTGCAAGATCATAATGAAACTTGTCACGCCTAAACGAACATGAAATTTCTTGTTTTCTTAGGAATCATCACAACTGTAGCTGCATTTCACCAAGAATGTAGTTTACAGTCATGTACTCAACATCAACCATATGTAGTTGATGACCCGTGTCCTATTCACTTCTATTCTAAATGGTATATTAGAGTAGGAGCTAGAAAATCAGCACCTTTAATTGAATTGTGCGTGGATGAGGCTGGTTCTAAATCACCCATTCAGTACATCGATATCGGTAATTATACAGTTTCCTGTTTACCTTTTACAATTAATTGCCAGGAACCTAAATTGGGTAGTCTTGTAGTGCGTTGTTCGTTCTATGAAGACTTTTTAGAGTATCAT27848- AAAAAAAAAAAA29892-

EPI_ISL_419224
 2020-02-13 2020-04-01
 China hCoV-19/Hong Kong/HKPU52-3101/2020
 G25500A G26144T

EPI_ISL_419226
 2020-02-13 2020-04-01
 China hCoV-19/Hong Kong/HKPU54-0302/2020
 C203T C1404T A4426G C15273T A22429G G26144T

EPI_ISL_451362
 2020-02-13 2020-05-24
 China hCoV-19/China/SC-PHCC2-042/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- A1430G C6318T G16535T CC18109-T TG18987-

EPI_ISL_451391
 2020-02-13 2020-05-24
 China hCoV-19/China/SC-WCH4-289/2020
 A16824G

EPI_ISL_454417 MT510728
 2020-02-13 2020-05-25
 China SARS-CoV-2/human/CHN/SARS-CoV-2-MZ01 Meizhou_MZ01/2020
 C3817T C8782T T15983A G25598T T28144C

EPI_ISL_454999
 2020-02-13 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM2-264/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- C11897T T13243C T14684C

EPI_ISL_464169
 2020-02-13 2020-06-11
 United Kingdom hCoV-19/England/20078003804/2020
 A2480G C2558T G11083T C14805T G26144T A29478R

EPI_ISL_479850
 2020-02-13 2020-07-01
 Japan hCoV-19/Japan/PG-0114/2020
 ATTAAAGGTTT1- T8323C G11083T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_490001
 2020-02-13 2020-07-14
 Saudi Arabia hCoV-19/Saudi Arabia/545/2020
 C241T C3037T C14408T C18877T C22444T A23403G A23503G G25563T C26735T

EPI_ISL_490002
 2020-02-13 2020-07-14
 Saudi Arabia hCoV-19/Saudi Arabia/553/2020
 C241T G713T C897T C3037T T7386C A7487G C14408T C18555T C18877T A23403G G25563T C26735T

EPI_ISL_530010
 2020-02-13 2020-09-10
 Spain hCoV-19/Spain/MD-H12-81/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10747T C14408T A20268G A23403G G29734C ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

MT755888
 2020-02-13 2020-07-14
 Saudi Arabia SARS-CoV-2/human/SAU/545/2020
 C241T C3037T C14408T C18877T C22444T A23403G A23503G G25563T C26735T

MT755889
 2020-02-13 2020-07-14
 Saudi Arabia SARS-CoV-2/human/SAU/553/2020
 C241T G713T C897T C3037T T7386C A7487G C14408T C18555T C18877T A23403G G25563T C26735T

EPI_ISL_416394
 2020-02-14 2020-03-20
 China hCoV-19/Shanghai/SH0102/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G2293T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_418998
 2020-02-14 2020-04-01
 Singapore hCoV-19/Singapore/14Clin/2020
 C8782T ACTTGAACTGCAAGATCATAATGAAACTTGTCACGCCTAAACGAACATGAAATTTCTTGTTTTCTTAGGAATCATCACAACTGTAGCTGCATTTCACCAAGAATGTAGTTTACAGTCATGTACTCAACATCAACCATATGTAGTTGATGACCCGTGTCCTATTCACTTCTATTCTAAATGGTATATTAGAGTAGGAGCTAGAAAATCAGCACCTTTAATTGAATTGTGCGTGGATGAGGCTGGTTCTAAATCACCCATTCAGTACATCGATATCGGTAATTATACAGTTTCCTGTTTACCTTTTACAATTAATTGCCAGGAACCTAAATTGGGTAGTCTTGTAGTGCGTTGTTCGTTCTATGAAGACTTTTTAGAGTATCAT27848- AAAAAAAAAAAA29892-

EPI_ISL_420889 LC534418
 2020-02-14 2020-03-19
 Japan SARS-CoV-2/Hu/DP/Kng/19-031
 ATTA1- C7105T G11083T G15418T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_451368
 2020-02-14 2020-05-24
 China hCoV-19/China/SC-PHCC2-048/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- C8782T C19637T T28144C

EPI_ISL_455000
 2020-02-14 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM2-265/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- C11897T T13243C T14684C

EPI_ISL_457692 CNA0013986
 2020-02-14 2020-06-02
 China Guangzhou/GZMU0081/2020
 C8782T T28144C AAAAAAAAAAAA29892-

EPI_ISL_457693 CNA0013987
 2020-02-14 2020-06-02
 China Guangzhou/GZMU0083/2020
 C8782T T28144C AAAAAAAAAAAA29892-

EPI_ISL_530011
 2020-02-14 2020-09-10
 Spain hCoV-19/Spain/MD-H12-82/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7945T C14408T A20268G A23403G G26918T ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_416406
 2020-02-15 2020-03-20
 China hCoV-19/Shanghai/SH0125/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1397A C5869T C9474T G11083T C17502T G19518T C25207T T28688C G29742T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416407
 2020-02-15 2020-03-20
 China hCoV-19/Shanghai/SH0126/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G1397A C5869T G11083T C17502T G19518T C25207T T28688C G29742T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416565 LC570961
 2020-02-15 2020-03-23
 Japan DP0005
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- G11083T C18656T C29635T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_416566 LC570962
 2020-02-15 2020-03-23
 Japan DP0027
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- G11083T A12964G A29324G AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_416567 LC570963
 2020-02-15 2020-03-23
 Japan DP0037
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- G11083T G11410A G15907A TA29564- TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_416569 LC570967
 2020-02-15 2020-03-23
 Japan DP0059
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G11083T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_416570 LC570968
 2020-02-15 2020-03-23
 Japan DP0065
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C254T G11083T G22104T G29736T G29751C GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_416571 LC570969
 2020-02-15 2020-03-23
 Japan DP0077
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- G4127A G11083T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_416572 LC570970
 2020-02-15 2020-03-23
 Japan DP0078
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- G11083T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_416573 LC570971
 2020-02-15 2020-03-23
 Japan DP0104
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- G11083T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_416574 LC570972
 2020-02-15 2020-03-23
 Japan DP0107
 ATT1- G11083T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_416575 LC570973
 2020-02-15 2020-03-23
 Japan DP0121
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- G11083T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_416576 LC570974
 2020-02-15 2020-03-23
 Japan DP0133
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- G11083T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_416577 LC570975
 2020-02-15 2020-03-23
 Japan DP0134
 ATT1- G11083T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_416578 LC570976
 2020-02-15 2020-03-23
 Japan DP0152
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C9474T G11083T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_416579 LC570977
 2020-02-15 2020-03-23
 Japan DP0158
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- T8004C G11083T A21917G AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_416580 LC570978
 2020-02-15 2020-03-23
 Japan DP0184
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- G11083T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_416581 LC570979
 2020-02-15 2020-03-23
 Japan DP0190
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- T8323C G11083T C25658T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_416582 LC570980
 2020-02-15 2020-03-23
 Japan DP0191
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- A3854G G11083T C29635T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_416583 LC570981
 2020-02-15 2020-03-23
 Japan DP0196
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C5284T G11083T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_416584 LC570982
 2020-02-15 2020-03-23
 Japan DP0200
 ATT1- A3132G G11083T G11410A AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_451393
 2020-02-15 2020-05-24
 China hCoV-19/China/SC-WCH4-291/2020
 A16824G

EPI_ISL_454418 MT510727
 2020-02-15 2020-05-25
 China SARS-CoV-2/human/CHN/SARS-CoV-2-MZ02 Meizhou_MZ02/2020
 G2203T C2701A C3817T C8782T T15983A T28144C

EPI_ISL_455003
 2020-02-15 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM2-268/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- T4873C A4992C C11897T T13243C T14684C A26098T

EPI_ISL_479824
 2020-02-15 2020-07-01
 Japan hCoV-19/Japan/PG-0066/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C11752T C19170A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480042
 2020-02-15 2020-07-01
 Japan hCoV-19/Japan/PG-0372/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- G3179A C6982T C8782T T28144C TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_530012
 2020-02-15 2020-09-10
 Spain hCoV-19/Spain/MD-H12-83/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7945T C14408T A20268G G21296A A23403G G26918T ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_416585 LC570983
 2020-02-16 2020-03-23
 Japan DP0236
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C335T G11083T G29736T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416586 LC570984
 2020-02-16 2020-03-23
 Japan DP0274
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- G11083T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_416587 LC570985
 2020-02-16 2020-03-23
 Japan DP0278
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T A15246G C29635T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_416588 LC570986
 2020-02-16 2020-03-23
 Japan DP0286
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- TGGTCATGTTATGGT508- G11083T C29635T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_416589 LC570987
 2020-02-16 2020-03-23
 Japan DP0287
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- G11083T G11310T A24819G G29674T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_416590 LC570988
 2020-02-16 2020-03-23
 Japan DP0289
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- G11083T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_416591 LC570989
 2020-02-16 2020-03-23
 Japan DP0290
 ATT1- G11083T T24436C AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_416592 LC570990
 2020-02-16 2020-03-23
 Japan DP0294
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- G11083T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416593 LC570991
 2020-02-16 2020-03-23
 Japan DP0311
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G4127A G11083T TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_416594 LC570992
 2020-02-16 2020-03-23
 Japan DP0319
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_416595 LC570993
 2020-02-16 2020-03-23
 Japan DP0328
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- G11083T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_416596 LC570994
 2020-02-16 2020-03-23
 Japan DP0344
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_416597 LC570995
 2020-02-16 2020-03-23
 Japan DP0346
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G11083T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_416598 LC570996
 2020-02-16 2020-03-23
 Japan DP0357
 ATTAAAGG1- G11083T C29635T ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_416599 LC570997
 2020-02-16 2020-03-23
 Japan DP0361
 ATTAAAGGTTTATACCTTC1- G11083T G11410A ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_416600 LC570998
 2020-02-16 2020-03-23
 Japan DP0438
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- G11083T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_416601 LC570999
 2020-02-16 2020-03-23
 Japan DP0457
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- G4201T G11083T C25000T G25244T GAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29864-

EPI_ISL_416603 LC571002
 2020-02-16 2020-03-23
 Japan DP0464
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- G11083T C18656T C29635T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_416604 LC571003
 2020-02-16 2020-03-23
 Japan DP0476
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- G11083T C21575T C29592T C29635T TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_416605 LC571004
 2020-02-16 2020-03-23
 Japan DP0481
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- T973C G9141A G11083T G26062T TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_416606 LC571005
 2020-02-16 2020-03-23
 Japan DP0482
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- G11083T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_422429
 2020-02-16 2020-04-10
 Singapore hCoV-19/Singapore/36/2020
 ATTAAA1- G27147C T29244K CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_428822
 2020-02-16 2020-04-22
 Singapore hCoV-19/Singapore/43/2020
 ATTAAA1- C8782T G14414K ACTTGAACTGCAAGATCATAATGAAACTTGTCACGCCTAAACGAACATGAAATTTCTTGTTTTCTTAGGAATCATCACAACTGTAGCTGCATTTCACCAAGAATGTAGTTTACAGTCATGTACTCAACATCAACCATATGTAGTTGATGACCCGTGTCCTATTCACTTCTATTCTAAATGGTATATTAGAGTAGGAGCTAGAAAATCAGCACCTTTAATTGAATTGTGCGTGGATGAGGCTGGTTCTAAATCACCCATTCAGTACATCGATATCGGTAATTATACAGTTTCCTGTTTACCTTTTACAATTAATTGCCAGGAACCTAAATTGGGTAGTCTTGTAGTGCGTTGTTCGTTCTATGAAGACTTTTTAGAGTATCAT27848- G28378K AAAAAAAAAAAA29892-

EPI_ISL_454749
 2020-02-16 2020-05-29
 Japan hCoV-19/Japan/DP0321/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_464175
 2020-02-16 2020-06-11
 United Kingdom hCoV-19/England/20080000104/2020
 A2480G C2558T G11083T C14805T A23999G G26144T

EPI_ISL_466615
 2020-02-16 2020-06-11
 United Kingdom hCoV-19/England/20168037604/2020
 C241T C3037T C14408T A23223G A23403G C25587T T26483C GGG28881AAC

EPI_ISL_477170
 2020-02-16 2020-06-29
 Singapore hCoV-19/Singapore/470/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_490003
 2020-02-16 2020-07-14
 Saudi Arabia hCoV-19/Saudi Arabia/562/2020
 C241T T586A C3037T C14408T C18877T C22444T A23403G G25563T C26735T C28333T C28854T

EPI_ISL_530013
 2020-02-16 2020-09-10
 Spain hCoV-19/Spain/MD-H12-84/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1426T C3037T C6794G C14408T A20268G A23403G T25663C G29734C ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_538435
 2020-02-16 2020-09-17
 Singapore hCoV-19/Singapore/36nan/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G27147C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT755890
 2020-02-16 2020-07-14
 Saudi Arabia SARS-CoV-2/human/SAU/562/2020
 C241T T586A C3037T C14408T C18877T C22444T A23403G G25563T C26735T C28333T C28854T

EPI_ISL_413606 MT159717
 2020-02-17 2020-03-09
 United States SARS-CoV-2/human/USA/CruiseA-1/2020
 C3099T G11083T G28378T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_413612 MT159705
 2020-02-17 2020-03-09
 United States SARS-CoV-2/human/USA/CruiseA-7/2020
 C3738T G11083T G11410A C26326T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_413613 MT159706
 2020-02-17 2020-03-09
 United States SARS-CoV-2/human/USA/CruiseA-8/2020
 C9474T G11083T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_413614 MT159710
 2020-02-17 2020-03-09
 United States SARS-CoV-2/human/USA/CruiseA-9/2020
 G11083T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_413615 MT159707
 2020-02-17 2020-03-09
 United States SARS-CoV-2/human/USA/CruiseA-10/2020
 G3259T G11083T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_413616 MT159708
 2020-02-17 2020-03-09
 United States SARS-CoV-2/human/USA/CruiseA-11/2020
 C10036T G11083T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_414378
 2020-02-17 2020-03-12
 Singapore hCoV-19/Singapore/12/2020
 C8782T T24011C C25568A ACTTGAACTGCAAGATCATAATGAAACTTGTCACGCCTAAACGAACATGAAATTTCTTGTTTTCTTAGGAATCATCACAACTGTAGCTGCATTTCACCAAGAATGTAGTTTACAGTCATGTACTCAACATCAACCATATGTAGTTGATGACCCGTGTCCTATTCACTTCTATTCTAAATGGTATATTAGAGTAGGAGCTAGAAAATCAGCACCTTTAATTGAATTGTGCGTGGATGAGGCTGGTTCTAAATCACCCATTCAGTACATCGATATCGGTAATTATACAGTTTCCTGTTTACCTTTTACAATTAATTGCCAGGAACCTAAATTGGGTAGTCTTGTAGTGCGTTGTTCGTTCTATGAAGACTTTTTAGAGTATCAT27848- C29741T TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_414483 MT184911
 2020-02-17 2020-03-12
 United States 2019-nCoV/USA-CruiseA-24/2020
 C1063Y C3099T C10083Y C10507T G11083T G15193S G15586K C15810Y C28253Y G28378T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_414484 MT184912
 2020-02-17 2020-03-12
 United States 2019-nCoV/USA-CruiseA-25/2020
 G11083T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_416607 LC571006
 2020-02-17 2020-03-23
 Japan DP0543
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- A5845T G11083T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_416608 LC571007
 2020-02-17 2020-03-23
 Japan DP0544
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- A5845T G11083T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_416609 LC571008
 2020-02-17 2020-03-23
 Japan DP0568
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAG1- G11083T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_416610 LC571009
 2020-02-17 2020-03-23
 Japan DP0588
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- G11083T C29635T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_416611 LC571010
 2020-02-17 2020-03-23
 Japan DP0644
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- G11083T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_416612 LC571011
 2020-02-17 2020-03-23
 Japan DP0645
 ATTAAAGGTTTATACCTTCCCAGGT1- G11083T G27282A AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_416613 LC571012
 2020-02-17 2020-03-23
 Japan DP0654
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- G11083T C18656T C20762T C24797A C29463T C29635T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_416614 LC571013
 2020-02-17 2020-03-23
 Japan DP0687
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- G11083T G20709T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_416617 LC571019
 2020-02-17 2020-03-23
 Japan DP0699
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- G11083T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_416619 LC571022
 2020-02-17 2020-03-23
 Japan DP0703
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- G11083T C18656T C29635T TGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29691-

EPI_ISL_416620 LC571023
 2020-02-17 2020-03-23
 Japan DP0724
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- G11083T G27214T AATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29818-

EPI_ISL_416621 LC571024
 2020-02-17 2020-03-23
 Japan DP0743
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- G11083T G29227T TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_416622 LC571025
 2020-02-17 2020-03-23
 Japan DP0752
 ATTA1- C4158T G11083T GAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29864-

EPI_ISL_416624 LC571030
 2020-02-17 2020-03-23
 Japan DP0764
 ATT1- G11083T C18656T C29635T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_416625 LC571031
 2020-02-17 2020-03-23
 Japan DP0765
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGAT1- C9223T G11083T C18656T C29635T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_416627 LC571034
 2020-02-17 2020-03-23
 Japan DP0785
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- G11083T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_416628 LC571035
 2020-02-17 2020-03-23
 Japan DP0786
 ATTAAAGGTTTATACCTTCCCAGGTA1- G11083T ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_416629 LC571036
 2020-02-17 2020-03-23
 Japan DP0802
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- G11083T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_416630 LC571037
 2020-02-17 2020-03-23
 Japan DP0803
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACT1- G4162T G11083T TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_416631 LC571038
 2020-02-17 2020-03-23
 Japan DP0804
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- G11083T TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_416632 LC571039
 2020-02-17 2020-03-23
 Japan DP0827
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G11083T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_416633 LC571040
 2020-02-17 2020-03-23
 Japan DP0880
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- G11083T C27804T AATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29818-

EPI_ISL_416634 LC571041
 2020-02-17 2020-03-23
 Japan DP0890
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- G11083T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_419228
 2020-02-17 2020-04-01
 China hCoV-19/Hong Kong/HKPU60-0802/2020
 A5536G

EPI_ISL_428462 NMDC60013125-01
 2020-02-17 2020-04-21
 China hCoV-19/Guangdong/20SF4047/2020
 C8782T C17502T T28144C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_454974
 2020-02-17 2020-05-29
 China hCoV-19/Wuhan/HB-WH5-231/2020
 T490A T26729C G28077C T28144C

EPI_ISL_455002
 2020-02-17 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM2-267/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- T13243C T14684C

EPI_ISL_455006
 2020-02-17 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM2-271/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- T13243C T14684C

EPI_ISL_457694 CNA0013988
 2020-02-17 2020-06-02
 China Guangzhou/GZMU0092/2020
 G6819T C17373T C28854T G29527A AAAAAAAAAAAA29892-

EPI_ISL_457695 CNA0013989
 2020-02-17 2020-06-02
 China Guangzhou/GZMU0095/2020
 C8782T T28144C AAAAAAAAAAAA29892-

EPI_ISL_479851
 2020-02-17 2020-07-01
 Japan hCoV-19/Japan/PG-0115/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479863
 2020-02-17 2020-07-01
 Japan hCoV-19/Japan/PG-0140/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- A3132G G11083T G11410A ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480030
 2020-02-17 2020-07-01
 Japan hCoV-19/Japan/PG-0359/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACT1- G11083T C18656T C29635T TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_490004
 2020-02-17 2020-07-14
 Saudi Arabia hCoV-19/Saudi Arabia/578/2020
 C241T C3037T C14408T C18877T C22444T A23403G G25563T C26735T C27527T C28854T C29421T

EPI_ISL_497961
 2020-02-17 2020-07-26
 South Korea hCoV-19/Korea/KCDC2060/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCA1- G5572T G11083T C14805T G26144T A29869G AAAAAAAAAAAAAAAA29888-

EPI_ISL_530014
 2020-02-17 2020-09-10
 Spain hCoV-19/Spain/MD-H12-85/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9474T C14408T A20268G A23403G C29218T G29734C ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

MT755891
 2020-02-17 2020-07-14
 Saudi Arabia SARS-CoV-2/human/SAU/578/2020
 C241T C3037T C14408T C18877T C22444T A23403G G25563T C26735T C27527T C28854T C29421T

EPI_ISL_413607 MT159718
 2020-02-18 2020-03-09
 United States SARS-CoV-2/human/USA/CruiseA-2/2020
 G11083T C28409T G29736T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_413608 MT159719
 2020-02-18 2020-03-09
 United States SARS-CoV-2/human/USA/CruiseA-3/2020
 G11083T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_413620 MT159713
 2020-02-18 2020-03-09
 United States SARS-CoV-2/human/USA/CruiseA-15/2020
 G11083T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_413621 MT159714
 2020-02-18 2020-03-09
 United States SARS-CoV-2/human/USA/CruiseA-16/2020
 G11083T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_414379
 2020-02-18 2020-03-12
 Singapore hCoV-19/Singapore/13/2020
 A1- C8782T T17723C ACTTGAACTGCAAGATCATAATGAAACTTGTCACGCCTAAACGAACATGAAATTTCTTGTTTTCTTAGGAATCATCACAACTGTAGCTGCATTTCACCAAGAATGTAGTTTACAGTCATGTACTCAACATCAACCATATGTAGTTGATGACCCGTGTCCTATTCACTTCTATTCTAAATGGTATATTAGAGTAGGAGCTAGAAAATCAGCACCTTTAATTGAATTGTGCGTGGATGAGGCTGGTTCTAAATCACCCATTCAGTACATCGATATCGGTAATTATACAGTTTCCTGTTTACCTTTTACAATTAATTGCCAGGAACCTAAATTGGGTAGTCTTGTAGTGCGTTGTTCGTTCTATGAAGACTTTTTAGAGTATCAT27848- C28868T TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_414479 MT184907
 2020-02-18 2020-03-12
 United States SARS-CoV-2/human/USA/CruiseA-19/2020
 G11083T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_414482 MT184910
 2020-02-18 2020-03-12
 United States 2019-nCoV/USA-CruiseA-23/2020
 C254T C1911Y T9157C G11083T G22104T G29736T G29751C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_427810
 2020-02-18 2020-04-19
 South Korea hCoV-19/Korea/KCDC2016/2020
 ATTAAAGGTT1- G174T A2406G G5572T G11083T C14805T G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_427811
 2020-02-18 2020-04-19
 South Korea hCoV-19/Korea/KCDC2017/2020
 ATTA1- G5572T G11083T C14805T T15399C G26144T

EPI_ISL_427813
 2020-02-18 2020-04-19
 South Korea hCoV-19/Korea/KCDC2019/2020
 ATTA1- G5572T G11083T C14805T G26144T

EPI_ISL_471425
 2020-02-18 2020-06-21
 South Korea hCoV-19/Korea/KCDC2020/2020
 G5572T G11083T C14805T G26144T

EPI_ISL_471426
 2020-02-18 2020-06-21
 South Korea hCoV-19/Korea/KCDC2021/2020
 C3411T G5572T G11083T C13551T C14805T G26144T

EPI_ISL_471438
 2020-02-18 2020-06-21
 South Korea hCoV-19/Korea/KCDC2022/2020
 A1- G5572T G11083T C14805T G26144T

EPI_ISL_479797
 2020-02-18 2020-07-01
 Japan hCoV-19/Japan/PG-0010/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C6151T C11752T C12708T C23191T G24410T TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_479798
 2020-02-18 2020-07-01
 Japan hCoV-19/Japan/PG-0011/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C6151T C11752T C12708T C23191T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_490005
 2020-02-18 2020-07-14
 Saudi Arabia hCoV-19/Saudi Arabia/583/2020
 C241T C3037T A9102G C14408T C18877T A23403G G25563T C26735T C29250T

EPI_ISL_490006
 2020-02-18 2020-07-14
 Saudi Arabia hCoV-19/Saudi Arabia/596/2020
 C241T C3037T C14408T C18877T C22444T A23403G A23503G G25563T C26735T

EPI_ISL_493414
 2020-02-18 2020-07-21
 Singapore hCoV-19/Singapore/654/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- G27147C G29798T AAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29812-

EPI_ISL_530015
 2020-02-18 2020-09-10
 Spain hCoV-19/Spain/MD-H12-87/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2724T C3037T A4307G C14408T C18117T A20268G A23403G C28854T ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

MT755892
 2020-02-18 2020-07-14
 Saudi Arabia SARS-CoV-2/human/SAU/583/2020
 C241T C3037T A9102G C14408T C18877T A23403G G25563T C26735T C29250T

MT755893
 2020-02-18 2020-07-14
 Saudi Arabia SARS-CoV-2/human/SAU/596/2020
 C241T C3037T C14408T C18877T C22444T A23403G A23503G G25563T C26735T

EPI_ISL_419231
 2020-02-19 2020-04-01
 China hCoV-19/Hong Kong/HKPU63-1402/2020
 G22309T G22936T

EPI_ISL_419232
 2020-02-19 2020-04-01
 China hCoV-19/Hong Kong/HKPU64-1202/2020
 G1149T G5539A C9962T G11083T C14724T T21584G G26144T

EPI_ISL_427812
 2020-02-19 2020-04-19
 South Korea hCoV-19/Korea/KCDC2018/2020
 ATTAAAGGTTT1- T4402C G5062T C8782T T28144C

EPI_ISL_451318
 2020-02-19 2020-05-24
 China hCoV-19/China/SC-LZ-079/2020
 C18060T T28144C

EPI_ISL_454952
 2020-02-19 2020-05-29
 China hCoV-19/Wuhan/HB-WH4-200/2020
 T12706A T28144C

EPI_ISL_471439
 2020-02-19 2020-06-21
 South Korea hCoV-19/Korea/KCDC2023/2020
 ATTAA1- T3142C G5572T G11083T C14805T G26144T

EPI_ISL_471440
 2020-02-19 2020-06-21
 South Korea hCoV-19/Korea/KCDC2024/2020
 A1- T921A G5572T G11083T C14805T C15216T G26144T AAAAAAAA29896-

EPI_ISL_471441
 2020-02-19 2020-06-21
 South Korea hCoV-19/Korea/KCDC2025/2020
 ATTAAAGGTTTA1- T693C G5572T G11083T C14805T G26144T

EPI_ISL_471442
 2020-02-19 2020-06-21
 South Korea hCoV-19/Korea/KCDC2026/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- G5572T G11083T C14805T G26144T

EPI_ISL_471443
 2020-02-19 2020-06-21
 South Korea hCoV-19/Korea/KCDC2027/2020
 G5572T G11083T C14805T G26144T G29717A

EPI_ISL_471446
 2020-02-19 2020-06-21
 South Korea hCoV-19/Korea/KCDC2040/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- G5572T G11083T C14805T C21575T G26144T

EPI_ISL_471447
 2020-02-19 2020-06-21
 South Korea hCoV-19/Korea/KCDC2041/2020
 ATTAAAGGTTT1- G5572T G11083T C14805T G26144T

EPI_ISL_471448
 2020-02-19 2020-06-21
 South Korea hCoV-19/Korea/KCDC2042/2020
 AT1- G5572T C11074T G11083T C12049T C14805T A17457R T25219C G26144T

EPI_ISL_471449
 2020-02-19 2020-06-21
 South Korea hCoV-19/Korea/KCDC2043/2020
 G5572T G11083T C14805T G26144T

EPI_ISL_471450
 2020-02-19 2020-06-21
 South Korea hCoV-19/Korea/KCDC2044/2020
 ATTA1- G5572T C11074T G11083T C12049T C14805T G26144T

EPI_ISL_476795
 2020-02-19 2020-06-26
 Singapore hCoV-19/Singapore/469/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480031
 2020-02-19 2020-07-01
 Japan hCoV-19/Japan/PG-0361/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- G9141A G11083T G26062T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_497960
 2020-02-19 2020-07-26
 South Korea hCoV-19/Korea/KCDC2039/2020
 G5572T G11083T C14805T G26144T

EPI_ISL_497968
 2020-02-19 2020-07-26
 South Korea hCoV-19/Korea/KCDC2067/2020
 G5572T G11083T C14805T G21778A T22928C C23917T G26144T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_497969
 2020-02-19 2020-07-26
 South Korea hCoV-19/Korea/KCDC2068/2020
 ATTAAAGGTTT1- T3142C G5572T G11083T C14805T G26144T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_412973
 2020-02-20 2020-03-01
 Italy hCoV-19/Italy/CDG1/2020
 C241T C3037T C14408T A23403G

EPI_ISL_413456 MT598633
 2020-02-20 2020-03-05
 United States SARS-CoV-2/human/USA/WA-S2/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_413459
 2020-02-20 2020-03-05
 Japan hCoV-19/Japan/TK-20-31-3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAG1- G11083T C29635T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_413617 MT159709
 2020-02-20 2020-03-09
 United States SARS-CoV-2/human/USA/CruiseA-12/2020
 G11083T C29635T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_413618 MT159711
 2020-02-20 2020-03-09
 United States SARS-CoV-2/human/USA/CruiseA-13/2020
 G11083T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418325
 2020-02-20 2020-02-20
 Canada hCoV-19/Canada/ON_PHL5472/2020
 A1- G1397A A2832G G11083T T28688C G29742T AGTGTAC29756- AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_451347
 2020-02-20 2020-05-24
 China hCoV-19/China/SC-PHCC1-026/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- TGCAGCTTTTGCTACTGCTCAAGAAGCTTATGAGCAGGCTGTTGCTAATGGTGATTCTGAAGTTGTTCTTAAAAAGTT12127- C23895A T28144C G28878A

EPI_ISL_454965
 2020-02-20 2020-05-29
 China hCoV-19/Wuhan/HB-WH5-220/2020
 C8055T C8266T C18329T C22006T C22858T C23298A

EPI_ISL_457696 CNA0013990
 2020-02-20 2020-06-02
 China Guangzhou/GZMU0099/2020
 C8782T T28144C AAAAAAAAAAAA29892-

EPI_ISL_457697 CNA0013991
 2020-02-20 2020-06-02
 China Guangzhou/GZMU0101/2020
 T3160C G6819T C17373T C21711T G29527A AAAAAAAAAAAA29892-

EPI_ISL_471444
 2020-02-20 2020-06-21
 South Korea hCoV-19/Korea/KCDC2028/2020
 ATTAAAGGTTTA1- G5572T G11083T C14805T G26144T

EPI_ISL_471445
 2020-02-20 2020-06-21
 South Korea hCoV-19/Korea/KCDC2029/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTC1- C1342A G11083T C14805T G26144T C26681T AAAAAAAAAAAAAAAA29888-

EPI_ISL_471451
 2020-02-20 2020-06-21
 South Korea hCoV-19/Korea/KCDC2045/2020
 ATTAAAGGTTTATAC1- G5572T A9889G G11083T C14805T G26144T

EPI_ISL_471453
 2020-02-20 2020-06-21
 South Korea hCoV-19/Korea/KCDC2047/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCAC1- T490A C1101T G3119A C8782T C24034T T26729C G28077C T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481376
 2020-02-20 2020-07-03
 South Korea hCoV-19/Korea/KCDC2056/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C176T G5572T G11083T C14805T C19983T G26144T

EPI_ISL_490007
 2020-02-20 2020-07-14
 Saudi Arabia hCoV-19/Saudi Arabia/610/2020
 C241T C3037T C14408T C18877T A23403G G25563T C26735T C27527T C28854T

EPI_ISL_497951
 2020-02-20 2020-07-26
 South Korea hCoV-19/Korea/KCDC2030/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCAC1- A118G G11083T C14805T G26144T C26681T ACAAAAAAAAAAAAAA29869-

EPI_ISL_497953
 2020-02-20 2020-07-26
 South Korea hCoV-19/Korea/KCDC2032/2020
 G11083T C14805T A23512G C25416T G26144T C26681T

EPI_ISL_497954
 2020-02-20 2020-07-26
 South Korea hCoV-19/Korea/KCDC2033/2020
 G11083T C14805T G26144T C26681T

EPI_ISL_497955
 2020-02-20 2020-07-26
 South Korea hCoV-19/Korea/KCDC2034/2020
 A1C G11083T C14805T T21769C G26144T C26681T

EPI_ISL_497956
 2020-02-20 2020-07-26
 South Korea hCoV-19/Korea/KCDC2035/2020
 ATTA1- G11083T C14805T G26144T C26681T G27556T

EPI_ISL_497957
 2020-02-20 2020-07-26
 South Korea hCoV-19/Korea/KCDC2036/2020
 ATTA1- G11083T C14805T G26144T C26681T

EPI_ISL_497958
 2020-02-20 2020-07-26
 South Korea hCoV-19/Korea/KCDC2037/2020
 AT1- G11083T C14805T G26144T C26681T

EPI_ISL_497959
 2020-02-20 2020-07-26
 South Korea hCoV-19/Korea/KCDC2038/2020
 A1- G11083T C14805T G26144T C26681T

EPI_ISL_497967
 2020-02-20 2020-07-26
 South Korea hCoV-19/Korea/KCDC2066/2020
 ATTAAAGGTTTATAC1- G5572T G11083T C14805T G26144T ACAAAAAAAAAAAAAA29869-

EPI_ISL_497971
 2020-02-20 2020-07-26
 South Korea hCoV-19/Korea/KCDC2070/2020
 G5572T G11083T C14805T G22955T G26144T T29851A CTTAGGAGAATG29857-

EPI_ISL_497972
 2020-02-20 2020-07-26
 South Korea hCoV-19/Korea/KCDC2071/2020
 ATTAAAGGTTTATAC1- G5572T G11083T C14805T G26144T ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_497973
 2020-02-20 2020-07-26
 South Korea hCoV-19/Korea/KCDC2072/2020
 ATTAAA1- G5572T G11083T C14805T G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_497974
 2020-02-20 2020-07-26
 South Korea hCoV-19/Korea/KCDC2073/2020
 T921A G5572T G11083T C14805T G26144T ATTTTAATAGCTTCTTAGGAGAATGAC29844-

EPI_ISL_530016
 2020-02-20 2020-09-10
 Spain hCoV-19/Spain/MD-H12-89/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7122C C14408T T17126C A20268G A23403G ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_538436
 2020-02-20 2020-09-17
 Singapore hCoV-19/Singapore/913/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C2325A T21524G C21575T C24784T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540993
 2020-02-20 2020-09-22
 South korea hCoV-19/South Korea/IHC597/2020
 ATTAAAGGTTTATACC1- G5572T G11083T C14805T G26144T AAAAAAAAAAAAAAAA29888-

EPI_ISL_540994
 2020-02-20 2020-09-22
 South korea hCoV-19/South Korea/IHC610/2020
 ATTAAAGGTTTATACC1- T3142C G5572T G11083T C14805T G26144T AAAAAAAAAAAAAAAA29888-

MT755894
 2020-02-20 2020-07-14
 Saudi Arabia SARS-CoV-2/human/SAU/610/2020
 C241T C3037T C14408T C18877T A23403G G25563T C26735T C27527T C28854T

EPI_ISL_413609 MT159720
 2020-02-21 2020-03-09
 United States SARS-CoV-2/human/USA/CruiseA-4/2020
 C1385T G11083T C29230T C29635T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_413610 MT159721
 2020-02-21 2020-03-09
 United States SARS-CoV-2/human/USA/CruiseA-5/2020
 G11083T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_413611 MT159722
 2020-02-21 2020-03-09
 United States SARS-CoV-2/human/USA/CruiseA-6/2020
 G11083T G11410A C26326T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_414480 MT184908
 2020-02-21 2020-03-12
 United States SARS-CoV-2/human/USA/CruiseA-21/2020
 C254T G11083T G29736T G29751C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_414481 MT184909
 2020-02-21 2020-03-12
 United States SARS-CoV-2/human/USA/CruiseA-22/2020
 G11083T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_417137 MT627270
 2020-02-21 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S84/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_418218
 2020-02-21 2020-03-29
 France hCoV-19/France/HF1465/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTT1- C241T C1059T C3037T C14408T A23403G G25563T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_419831 MT641645
 2020-02-21 2020-04-03
 Australia SARS-CoV-2/human/AUS/NT01/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C3099T G11083T G28378T

EPI_ISL_419832 MT641646
 2020-02-21 2020-04-03
 Australia SARS-CoV-2/human/AUS/NT02/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C9333T G11083T C11671T T11737C

EPI_ISL_429968
 2020-02-21 2020-04-24
 France hCoV-19/France/HF1463/2020
 C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_447900 MT476384
 2020-02-21 2020-05-15
 United States SARS-CoV-2/ENV/USA/UF-11/2020
 A1T C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAA29888-

EPI_ISL_451306
 2020-02-21 2020-05-24
 Italy hCoV-19/Italy/PV-5314-B/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T C14408T A23403G GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_451307
 2020-02-21 2020-05-24
 Italy hCoV-19/Italy/PV-5314-N/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G G24077T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_454920
 2020-02-21 2020-05-29
 China hCoV-19/Wuhan/HB-WH2-148/2020
 G26144T C29545T

EPI_ISL_454921
 2020-02-21 2020-05-29
 China hCoV-19/Wuhan/HB-WH2-149/2020
 C1218T A5027G C15324T G22343C C27247T C29303T

EPI_ISL_454995
 2020-02-21 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM-115/2020
 A4800G A9737G C10626T C29109T

EPI_ISL_471452
 2020-02-21 2020-06-21
 South Korea hCoV-19/Korea/KCDC2046/2020
 AT1- C11074T G11083T C14805T G26144T C26681T

EPI_ISL_471454
 2020-02-21 2020-06-21
 South Korea hCoV-19/Korea/KCDC2048/2020
 ATTAAAGGTTTAT1- G5572T C6327T G11083T C14805T G26144T

EPI_ISL_471455
 2020-02-21 2020-06-21
 South Korea hCoV-19/Korea/KCDC2049/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C2857M G5572T A9204R G11083T A13614W C14805T G26144T

EPI_ISL_479870
 2020-02-21 2020-07-01
 Japan hCoV-19/Japan/PG-0159/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C11752T C28854T G29543C TAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29817-

EPI_ISL_480032
 2020-02-21 2020-07-01
 Japan hCoV-19/Japan/PG-0362/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- G11083T C18656T C29635T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_480043
 2020-02-21 2020-07-01
 Japan hCoV-19/Japan/PG-0373/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- G3179A C6982T C8782T T28144C TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_481370
 2020-02-21 2020-07-03
 South Korea hCoV-19/Korea/KCDC2050/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCAC1- G5572T G11083T C14805T G26144T AAAAAAAAAAAAAAAA29888-

EPI_ISL_481371
 2020-02-21 2020-07-03
 South Korea hCoV-19/Korea/KCDC2051/2020
 T4402C G5062T C8782T C21846T T22117G T28144C

EPI_ISL_481372
 2020-02-21 2020-07-03
 South Korea hCoV-19/Korea/KCDC2052/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- G5572T G11083T C14805T G26144T

EPI_ISL_481374
 2020-02-21 2020-07-03
 South Korea hCoV-19/Korea/KCDC2054/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- G1721S G5572T G11083T C14805T C19983T G26144T

EPI_ISL_497970
 2020-02-21 2020-07-26
 South Korea hCoV-19/Korea/KCDC2069/2020
 G5572T G11083T C14805T C16575T A18095G G20974T T23395A G26144T TTTAATAGCTTCTTAGGAGAATG29846-

EPI_ISL_497975
 2020-02-21 2020-07-26
 South Korea hCoV-19/Korea/KCDC2074/2020
 ATTAAAGGTTTATACC1- C2146T G11083T C14805T G26144T C26681T ACAAAAAAAAAAAAAA29869-

EPI_ISL_497976
 2020-02-21 2020-07-26
 South Korea hCoV-19/Korea/KCDC2075/2020
 ATTAAAGGTT1- G5572T G11083T C12488T C14805T G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497977
 2020-02-21 2020-07-26
 South Korea hCoV-19/Korea/KCDC2076/2020
 ATTAAAGGTTTA1- G5572T G11083T C14805T G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_497978
 2020-02-21 2020-07-26
 South Korea hCoV-19/Korea/KCDC2077/2020
 ATTAAAGGTTT1- G662A G5572T G11083T C14805T G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497979
 2020-02-21 2020-07-26
 South Korea hCoV-19/Korea/KCDC2078/2020
 ATTAAAGGTTT1- G5572T G11083T C14805T G26144T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_497980
 2020-02-21 2020-07-26
 South Korea hCoV-19/Korea/KCDC2079/2020
 ATTAAAGGTTTA1- G5572T G11083T C14805T G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_497981
 2020-02-21 2020-07-26
 South Korea hCoV-19/Korea/KCDC2080/2020
 ATTAAAGGTTT1- G5572T G11083T C14805T C17747T G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_497982
 2020-02-21 2020-07-26
 South Korea hCoV-19/Korea/KCDC2081/2020
 ATTAAAGGTTT1- G5572T G11083T C14805T G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_497984
 2020-02-21 2020-07-26
 South Korea hCoV-19/Korea/KCDC2083/2020
 ATTAAAGGTTTATACCTTCCCAGG1- G5572T G11083T C14805T G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497991
 2020-02-21 2020-07-26
 South Korea hCoV-19/Korea/KCDC2090/2020
 ATTAAAGGTTTATACCTTC1- G5572T G11083T C14805T G26144T ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_497992
 2020-02-21 2020-07-26
 South Korea hCoV-19/Korea/KCDC2091/2020
 ATTAAAGGTTTA1- G5572T G11083T C14805T G26144T ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_497993
 2020-02-21 2020-07-26
 South Korea hCoV-19/Korea/KCDC2092/2020
 ATTAAAGGTTTATACCTTCCC1- G5572T G11083T C14805T G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_527873
 2020-02-21 2020-09-05
 Nigeria hCoV-19/Nigeria/ED01-CV155/2020
 ATTAA1- C21T A2480G C2558T G11083T C14805T G26144T C26625T C27297T G28851T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_530017
 2020-02-21 2020-09-10
 Spain hCoV-19/Spain/MD-H12-90/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G C26208T G29734C ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_540995
 2020-02-21 2020-09-22
 South korea hCoV-19/South Korea/IHC614/2020
 ATTAAAGGTTTATACC1- G5572T G11083T C14805T A15337G G26144T AAAAAAAAAAAAAAAA29888-

EPI_ISL_414571
 2020-02-22 2020-03-13
 China hCoV-19/Hong Kong/VM20002849/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- G11083T C29366T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_417135 MT627288
 2020-02-22 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S82/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_420456
 2020-02-22 2020-04-06
 Australia hCoV-19/Australia/WA11/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C3037T C9333T G11083T C11671T T11737C CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_430131 MT627630
 2020-02-22 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S277/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_437615 MT447163
 2020-02-22 2020-05-01
 Thailand SARS-CoV-2/human/THA/SI202620-NT/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C2942T G4390T C8782T G20134T G24047A T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_454911
 2020-02-22 2020-05-29
 China hCoV-19/Wuhan/HB-WH1-134/2020
 G3013T C17167A

EPI_ISL_454973
 2020-02-22 2020-05-29
 China hCoV-19/Wuhan/HB-WH5-229/2020
 T28144C

EPI_ISL_455010
 2020-02-22 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM2-278/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- T4873C T13243C T14684C A23503T

EPI_ISL_457699
 2020-02-22 2020-06-02
 Italy hCoV-19/Italy/206/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C241T C3037T C14408T A23403G TGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29809-

EPI_ISL_460079
 2020-02-22 2020-06-05
 Italy hCoV-19/Italy/BG-5825-22Feb/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G A26530G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_460091
 2020-02-22 2020-06-05
 Italy hCoV-19/Italy/MI-5925-22Feb/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T C14408T A23403G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_468039
 2020-02-22 2020-06-16
 Australia hCoV-19/Australia/SAP097/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C3099T G11083T G28378T

EPI_ISL_480033
 2020-02-22 2020-07-01
 Japan hCoV-19/Japan/PG-0363/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- G11083T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_480044
 2020-02-22 2020-07-01
 Japan hCoV-19/Japan/PG-0374/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1244T G3179A C6982T C8782T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480045
 2020-02-22 2020-07-01
 Japan hCoV-19/Japan/PG-0375/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A691T G3179A C6982T C8782T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480046
 2020-02-22 2020-07-01
 Japan hCoV-19/Japan/PG-0376/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- G3179A C6982T C8782T T28144C TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_481375
 2020-02-22 2020-07-03
 South Korea hCoV-19/Korea/KCDC2055/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- G5572T G11083T C14805T G26144T

EPI_ISL_481378
 2020-02-22 2020-07-03
 South Korea hCoV-19/Korea/KCDC2058/2020
 G5572T G11083T T12520C C14805T G26144T

EPI_ISL_486659
 2020-02-22 2020-07-10
 Italy hCoV-19/Italy/Hsacco-3/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

EPI_ISL_497983
 2020-02-22 2020-07-26
 South Korea hCoV-19/Korea/KCDC2082/2020
 ATTAAAGGTTTAT1- G5572T G11083T C14805T G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_497985
 2020-02-22 2020-07-26
 South Korea hCoV-19/Korea/KCDC2084/2020
 G5572T G11083T C14805T G26144T

EPI_ISL_497987
 2020-02-22 2020-07-26
 South Korea hCoV-19/Korea/KCDC2086/2020
 ATTAAAGGTTTATAC1- G5572T G11083T G13564T C14805T G15708T G26144T

EPI_ISL_497989
 2020-02-22 2020-07-26
 South Korea hCoV-19/Korea/KCDC2088/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- G5572T G11083T C14805T C25521T G26144T

EPI_ISL_530018
 2020-02-22 2020-09-10
 Spain hCoV-19/Spain/MD-H12-91/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C17639T A18585T A20268G A23403G C28638T ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_540996
 2020-02-22 2020-09-22
 South korea hCoV-19/South Korea/IHC685/2020
 ATTAAAGGTTTATACC1- G5572T G11083T C14805T G26144T AAAAAAAAAAAAAAAA29888-

EPI_ISL_412026
 2020-02-23 2020-02-24
 China hCoV-19/Hefei/2/2020
 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_412862 MT118835
 2020-02-23 2020-02-27
 United States 2019-nCoV/USA-CA9/2020
 C9924T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_419211
 2020-02-23 2020-04-01
 Israel hCoV-19/Israel/ISR_JP0320/2020
 ATTAAAGGTTTATACCTTCC1- CA21GG G11083T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871C

EPI_ISL_425117
 2020-02-23 2020-04-14
 South Korea hCoV-19/Korea/KCDC2001/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCT1- G26144T AAAAAAAAAAAAAAAA29888-

EPI_ISL_426163
 2020-02-23 2020-04-15
 South Korea hCoV-19/Korea/KCDC2003/2020
 TTAAAGGTTTATACC2- G7675T T8767C C8782T C17104T C18167T G26167T T28144C G29593A ACAAAAAAAAAAAAAA29869- A29885G

EPI_ISL_426167
 2020-02-23 2020-04-15
 South Korea hCoV-19/Korea/KCDC2003/2020/P1
 TTAAAGGTTTATACC2- G7675T T8767C C8782T C17104T C18167T G26167T T28144C G29593A ACAAAAAAAAAAAAAA29869- A29885G

EPI_ISL_426181
 2020-02-23 2020-04-15
 South Korea hCoV-19/Korea/KCDC2011/2020
 ATTAAAGGTTTATAC1- C16T T4402C G5062T C8782T C17474T T28144C A29871G AAAAAAAAAAAAAAAA29888-

EPI_ISL_426183
 2020-02-23 2020-04-15
 South Korea hCoV-19/Korea/KCDC2013/2020
 ATTAAAGGTTTATAC1- T490A C1101T G3119A C8782T C24034T T26729C G28077C T28144C AAAAAAAAAAAAAAAA29888-

EPI_ISL_455008
 2020-02-23 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM2-274/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- A9243G C11074T G11083T T13243C G29742T

EPI_ISL_455365
 2020-02-23 2020-05-29
 China hCoV-19/Wuhan/HB-WH1-132/2020
 G9130T G18412- T25382C T28144C C29095T G29179T

EPI_ISL_455366
 2020-02-23 2020-05-29
 China hCoV-19/Wuhan/HB-WH1-133/2020
 G10412T C26447G T28144C T29251- G29737T

EPI_ISL_455367
 2020-02-23 2020-05-29
 China hCoV-19/Wuhan/HB-WH1-139/2020
 G18412- C26447G

EPI_ISL_455368
 2020-02-23 2020-05-29
 China hCoV-19/Wuhan/HB-WH1-144/2020
 C8782T C19154T C26447G T28144C T28250G A28254- C29095T G29179T

EPI_ISL_457701
 2020-02-23 2020-06-02
 Oman hCoV-19/Oman/RESP-20-797/2020
 C884T G1397A G8653T G11083T T28688C G29742T

EPI_ISL_479864
 2020-02-23 2020-07-01
 Japan hCoV-19/Japan/PG-0141/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- G1458T GG28903CT TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_481373
 2020-02-23 2020-07-03
 South Korea hCoV-19/Korea/KCDC2053/2020
 G5572T C6267T G11083T C14805T G26144T

EPI_ISL_481377
 2020-02-23 2020-07-03
 South Korea hCoV-19/Korea/KCDC2057/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- G2129K G5572T A9889G G11083T G11999K G12758R C14805T G26144T T27705K

EPI_ISL_486660
 2020-02-23 2020-07-10
 Italy hCoV-19/Italy/Hsacco-4/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T C14408T A23403G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_490008 MT755895
 2020-02-23 2020-07-14
 Saudi Arabia SARS-CoV-2/human/SAU/627/2020
 C241T C1549T C3037T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_497988
 2020-02-23 2020-07-26
 South Korea hCoV-19/Korea/KCDC2087/2020
 ATTAAAGGTTTATACCT1- G5572T G11083T C14805T G26144T

EPI_ISL_497994
 2020-02-23 2020-07-26
 South Korea hCoV-19/Korea/KCDC2093/2020
 A1- G5572T A10699G G11083T C14805T G26144T

EPI_ISL_530019
 2020-02-23 2020-09-10
 Spain hCoV-19/Spain/MD-H12-93/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1181T C3037T C14408T A20268G A23403G G29734C ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_540997
 2020-02-23 2020-09-22
 South korea hCoV-19/South Korea/IHC719/2020
 ATTAAAGGTTTATACC1- T3142C G5572T G11083T C14805T G26144T AAAAAAAAAAAAAAAA29888-

EPI_ISL_412970 MT152824
 2020-02-24 2020-03-01
 United States SARS-CoV-2/human/USA/WA2/2020
 C5784T C8782T C17747T A17858G C18060T T28144C

EPI_ISL_413622 MT159715
 2020-02-24 2020-03-09
 United States SARS-CoV-2/human/USA/CruiseA-17/2020
 A5845T G11083T A25137C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_413623 MT159716
 2020-02-24 2020-03-09
 United States SARS-CoV-2/human/USA/CruiseA-18/2020
 TGGTCATGTTATGGT508- G11083T C22033A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_413996
 2020-02-24 2020-03-10
 Switzerland hCoV-19/Switzerland/TI9486/2020
 ATTAAAG1- A187G C241T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_414485 MT184913
 2020-02-24 2020-03-12
 United States 2019-nCoV/USA-CruiseA-26/2020
 G11083T C12513Y T20988Y C25587Y C28367Y G28916A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_414519 MT215194
 2020-02-24 2020-03-13
 China SARS-CoV-2/human/HKG.85_VM20002868/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- G1595A C9962T C11704T T13929C C14724T T21584G G26144T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_417445
 2020-02-24 2020-02-24
 Italy hCoV-19/Italy/UniMI01/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- C241T C3037T A11827T G11831T C11871T T11987A T12538A A12547T T12551A C14408T A23403G GAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29864-

EPI_ISL_417446
 2020-02-24 2020-02-24
 Italy hCoV-19/Italy/UniMI02/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C3037T C7239A T7249G G7272A C7279A G7290A C7296A C7299A T7345A T7348A T7351G A7603C A7606T G7646C T7666A A7710G C14408T A23403G A23450T GAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29864A

EPI_ISL_417447
 2020-02-24 2020-03-26
 Italy hCoV-19/Italy/UniMI03/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C3037T C14408T A23403G GAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29864A

EPI_ISL_419247
 2020-02-24 2020-04-01
 China hCoV-19/Hong Kong/HKPU83-1702/2020
 G1149T C9962T G11083T C14724T T21584G G26144T

EPI_ISL_419835 MT641648
 2020-02-24 2020-04-03
 Australia SARS-CoV-2/human/AUS/NT05/2020
 ATTAAAGGT1- G11083T C29635T

EPI_ISL_430292 MT632586
 2020-02-24 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S254/2020
 C5784T C8782T C17747T A17858G C18060T T28144C

EPI_ISL_437932
 2020-02-24 2020-05-12
 Austria hCoV-19/Austria/CeMM0045/2020
 C241T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAA29886-

EPI_ISL_450442 MT412134
 2020-02-24 2020-04-29
 China SARS-CoV-2/human/CHN/HN03/2020
 ATTAAAGGTTTATACCTTCCCAGG1- A270G T4402C G5062T C8782T T28144C AAAAAAAAAAAA29892-

EPI_ISL_454915
 2020-02-24 2020-05-29
 China hCoV-19/Wuhan/HB-WH1-138/2020
 C15324T C28093T C29303T

EPI_ISL_454998
 2020-02-24 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM-120/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- C8782T T28144C

EPI_ISL_455004
 2020-02-24 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM2-269/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- T13243C T14684C

EPI_ISL_455009
 2020-02-24 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM2-276/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- C11897T T13243C T14684C G24262T

EPI_ISL_455013
 2020-02-24 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM2-282/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- T13243C T14684C C26447G

EPI_ISL_455370
 2020-02-24 2020-05-29
 China hCoV-19/Wuhan/HB-WH2-146/2020
 G625T C19154T C26447G T28144C T28250G A28254-

EPI_ISL_457704
 2020-02-24 2020-06-02
 Oman hCoV-19/Oman/RESP-20-837/2020
 C635T C884T G1397A G8653T G11083T G14443T T24211C C27155T T28688C G29742T

EPI_ISL_460086
 2020-02-24 2020-06-05
 Italy hCoV-19/Italy/CR-7070-24Feb/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_479997
 2020-02-24 2020-07-01
 Japan hCoV-19/Japan/PG-0322/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C11752T C19170A TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_481379
 2020-02-24 2020-07-03
 South Korea hCoV-19/Korea/KCDC2059/2020
 ATTAAAGGTTTATACCTTCCCAGG1- G5572T A9889G G11083T C14805T C16961T G26144T

EPI_ISL_490009
 2020-02-24 2020-07-14
 Saudi Arabia hCoV-19/Saudi Arabia/640/2020
 C241T C3037T C11956T T13345G C14408T T17796G C18877T A23403G G25563T C26735T

EPI_ISL_497784
 2020-02-24 2020-07-25
 China hCoV-19/Hong Kong/HKU-200723-017/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C29366T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_497986
 2020-02-24 2020-07-26
 South Korea hCoV-19/Korea/KCDC2085/2020
 ATTAAAGGTTTATACCTTCC1- G5572T G11083T C14805T G22346T G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497990
 2020-02-24 2020-07-26
 South Korea hCoV-19/Korea/KCDC2089/2020
 ATTAAAGGTTTA1- G5572T G11083T C14805T G26144T AAA29901-

EPI_ISL_506947
 2020-02-24 2020-08-02
 South Korea hCoV-19/Korea/KCDC2153/2020
 ATTAAAGGTTTATA1- G256T G5572T G11083T C14805T C21575T G26144T C29098T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_530020
 2020-02-24 2020-09-10
 Spain hCoV-19/Spain/MD-H12-94/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_539531
 2020-02-24 2020-09-18
 Spain hCoV-19/Spain/CN-ISCIII-201048/2020
 C241T C3037T C3792T A4000C C8645A C14408T G21280A A21487G T21539C T21656C A23403G A23880T T29760C ATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29850-

EPI_ISL_568579
 2020-02-24 2020-10-02
 Italy hCoV-19/Italy/LOM-INMI-10734/2020
 C241T C3037T C14408T A23403G A26530G AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

MT755896
 2020-02-24 2020-07-14
 Saudi Arabia SARS-CoV-2/human/SAU/640/2020
 C241T C3037T C11956T T13345G C14408T T17796G C18877T A23403G G25563T C26735T

EPI_ISL_412912
 2020-02-25 2020-02-28
 Germany hCoV-19/Germany/Baden-Wuerttemberg-1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T G10265A C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_412964
 2020-02-25 2020-02-28
 Brazil hCoV-19/Brazil/SPBR-01/2020
 C241T C3037T C14408T A23403G AAAAAAAAAAAAA29891-

EPI_ISL_413619 MT159712
 2020-02-25 2020-03-09
 United States SARS-CoV-2/human/USA/CruiseA-14/2020
 C6636T G11083T C11750T C11956T T25795C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_414005
 2020-02-25 2020-03-10
 United Kingdom hCoV-19/England/200940527/2020
 A2480G C2558T C11171Y C14805T T21072C G26144T

EPI_ISL_414009
 2020-02-25 2020-03-10
 United Kingdom hCoV-19/England/200960515/2020
 C10741T C14805T G26144T

EPI_ISL_414497 MT582498
 2020-02-25 2020-03-12
 Germany SARS-CoV-2/human/DEU/NRW-02.1/2020
 G1440A G2891A

EPI_ISL_414517 MT215195
 2020-02-25 2020-03-13
 China SARS-CoV-2/human/HKG/90_VM20002907/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- G1595A C9962T C11704T T13929C C14724T T21584G G26144T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_414623
 2020-02-25 2020-03-15
 France hCoV-19/France/GE1583/2020/P1
 C8782T T9477A C14805T C25553T G25979T T28144C C28657T C28863T A29887C A29891C A29894C

EPI_ISL_414663 CNA0013710 MT568635
 2020-02-25 2020-03-16
 China Guangzhou/GZMU0016/2020
 ATTAAAGGTTT1- C8782T T28144C ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_414687 CNA0013712 MT568637
 2020-02-25 2020-03-16
 China Guangzhou/GZMU0031/2020
 ATTAAAGGTTTA1- AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872G

EPI_ISL_414688 CNA0013713 MT568638
 2020-02-25 2020-03-16
 China Guangzhou/GZMU0042/2020
 ATTAAAGGTTTAT1- C8782T C26447G T28144C T28250G A28254- C29095T ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_414689 CNA0013714 MT568639
 2020-02-25 2020-03-16
 China Guangzhou/GZMU0044/2020
 ATTAAAGGTTT1- C8782T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872G

EPI_ISL_414690 CNA0013715 MT568640
 2020-02-25 2020-03-16
 China Guangzhou/GZMU0047/2020
 ATTAAAGGTTTAT1- C8782T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_414691 CNA0013716 MT568641
 2020-02-25 2020-03-16
 China Guangzhou/GZMU0048/2020
 AT1- C8782T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_414692 CNA0013717 MT568634
 2020-02-25 2020-03-16
 China Guangzhou/GZMU0014/2020
 ATTAAAGGTTTA1- A1430G G16535T C18568T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_418251
 2020-02-25 2020-02-25
 Spain hCoV-19/Spain/Madrid201105/2020
 C241T C3037T C8782T T11244C C14408T C21263T A23403G AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_430737
 2020-02-25 2020-04-27
 China hCoV-19/Beijing/BJ1112/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1848T T8767C C8782T C9520T C17104T A22622G G26167T GAT27382CTC A28055G T28144C G29593A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_435121
 2020-02-25 2020-05-03
 United Arab Emirates hCoV-19/United Arab Emirates/L0184/2020
 C1170T C1185T G1397A G11083T T16545C C18377T T28688C G29374A G29742T

EPI_ISL_435126
 2020-02-25 2020-05-03
 United Arab Emirates hCoV-19/United Arab Emirates/L0904/2020
 G61T G1397A G11083T C20235A T20787C T22042C T28688C T28835C A29060G G29742T

EPI_ISL_435131
 2020-02-25 2020-05-03
 United Arab Emirates hCoV-19/United Arab Emirates/L2409/2020
 G1397A G11083T T28688C G29742T

EPI_ISL_435135
 2020-02-25 2020-05-03
 United Arab Emirates hCoV-19/United Arab Emirates/L4682/2020
 G1397A G2246A C9246T T28688C G29742T

EPI_ISL_435138
 2020-02-25 2020-05-03
 United Arab Emirates hCoV-19/United Arab Emirates/L6599/2020
 C13957T C15324T T21644C C23170T C24378T C29303T

EPI_ISL_435139
 2020-02-25 2020-05-03
 United Arab Emirates hCoV-19/United Arab Emirates/L6627/2020
 G1397A C2724T G11083T T28688C G29742T

EPI_ISL_437613 MT447165
 2020-02-25 2020-05-01
 Thailand SARS-CoV-2/human/THA/SI202872-NT/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- A895G C2942T G4390T G6865T C8782T G10670C G20134T G24047A T28144C TTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29709-

EPI_ISL_437614 MT447164
 2020-02-25 2020-05-01
 Thailand SARS-CoV-2/human/THA/SI202769-NT/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- G529T A895G T1891G C2652T G20134T G24047A T28144C CCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29732-

EPI_ISL_447252
 2020-02-25 2020-05-17
 Taiwan hCoV-19/Taiwan/TSGH-26/2020
 G199T C1059T G1397A A1637T T2290G -11075TTT G11083T G25785T A28288G T28648C T28688C T28888A G29742T -29870CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAC

EPI_ISL_447920
 2020-02-25 2020-05-19
 Thailand hCoV-19/Thailand/Bangkok_1716/2020
 A895G C2942T G4390T C8782T C9598T G20134T G24047A T28144C A29873G AAAAAAAAAAAA29892-

EPI_ISL_454912
 2020-02-25 2020-05-29
 China hCoV-19/Wuhan/HB-WH1-135/2020
 

EPI_ISL_455012
 2020-02-25 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM2-280/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- T4873C T13243C T14684C

EPI_ISL_460094
 2020-02-25 2020-06-05
 Italy hCoV-19/Italy/PV-8058-25Feb/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A20255G A23403G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_464185
 2020-02-25 2020-06-11
 United Kingdom hCoV-19/England/20094061404/2020
 G11083T A19949W A20055R

EPI_ISL_464186
 2020-02-25 2020-06-11
 United Kingdom hCoV-19/England/20094061504/2020
 C635Y C6606Y C7735Y G11083T C11976Y C28253Y

EPI_ISL_479802
 2020-02-25 2020-07-01
 Japan hCoV-19/Japan/PG-0031/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C11752T A14513G AAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29813-

EPI_ISL_479852
 2020-02-25 2020-07-01
 Japan hCoV-19/Japan/PG-0119/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- G11083T TTTGGGTGTTTA21982- C28310A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479871
 2020-02-25 2020-07-01
 Japan hCoV-19/Japan/PG-0160/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C11752T G28380T C28854T G29543C ATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29833-

EPI_ISL_479998
 2020-02-25 2020-07-01
 Japan hCoV-19/Japan/PG-0323/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C11752T C19170A TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_480047
 2020-02-25 2020-07-01
 Japan hCoV-19/Japan/PG-0377/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- G3179A C6982T C8782T T28144C TAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29817-

EPI_ISL_493137 MT781415
 2020-02-25 2020-07-21
 Thailand SARS-CoV-2/human/THA/MUMT-3/2020
 ATT1- A895G C2942T G4390T C8782T G24047A T28144C GTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29828-

EPI_ISL_501220
 2020-02-25 2020-07-31
 Malaysia hCoV-19/Malaysia/6359/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C11752T C19170A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_530021
 2020-02-25 2020-09-10
 Spain hCoV-19/Spain/MD-H12-95/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G15327T A20268G A23403G G29734C C29741T ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_413019
 2020-02-26 2020-03-03
 Switzerland hCoV-19/Switzerland/1000477102/2020
 -11075TTT G11083T C14805T T17247C C24378T G26144T C26894T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_413997
 2020-02-26 2020-03-10
 Switzerland hCoV-19/Switzerland/GE3895/2020
 ATTAAAGGTTTAT1- C241T C3037T C14408T T19839C A23403G GGG28881AAC

EPI_ISL_414011
 2020-02-26 2020-03-10
 United Kingdom hCoV-19/England/200990006/2020
 G11083T C14805T T17247C G26144T

EPI_ISL_414499 MT582496
 2020-02-26 2020-03-12
 Germany SARS-CoV-2/human/DEU/NRW-04/2020
 G1440A G2891A C4655T C22323Y

EPI_ISL_414600
 2020-02-26 2020-03-14
 France hCoV-19/France/GE1583/2020
 C8782T T9477A C14805T C25553T G25979T T28144C C28657T C28863T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_414624
 2020-02-26 2020-03-15
 France hCoV-19/France/N1620/2020/P1
 T18C A187G C241T C3037T C10728T C14408T A23403G

EPI_ISL_414625
 2020-02-26 2020-03-15
 France hCoV-19/France/PL1643/2020
 C241T C1059T C3037T C12049T T13521C C14408T A23403G G25563T

EPI_ISL_415741 MT370516
 2020-02-26 2020-03-19
 Taiwan SARS-CoV-2/human/TWN/CGMH-CGU-03/2020
 AT1- C1059T G1397A G11083T C23934T T28648C T28688C G29742T A29903-

EPI_ISL_416142
 2020-02-26 2020-03-20
 Denmark hCoV-19/Denmark/SSI-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23116T A23403G GGG28881AAC ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_416502
 2020-02-26 2020-03-22
 France hCoV-19/France/B2330/2020
 C241T C1059T C3037T G12866A C14408T A23403G G25563T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_417134 MT627263
 2020-02-26 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S81/2020
 A4494G C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417484
 2020-02-26 2020-03-26
 Norway hCoV-19/Norway/1380/2020
 ATTAAAGGT1- C884T G1397A C3040T G8653T A9353R G11083T T28688C G29742T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_418219
 2020-02-26 2020-03-29
 France hCoV-19/France/B1623/2020
 C241T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_418247
 2020-02-26 2020-02-26
 Spain hCoV-19/Spain/CastillayLeon201061/2020
 C241T C3037T C8782T C14408T C17285T A23403G GAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29795-

EPI_ISL_419250
 2020-02-26 2020-04-01
 China hCoV-19/Hong Kong/HKPU89-2502/2020
 G1149T C9962T G11083T C14724T T21584G G26144T

EPI_ISL_419554
 2020-02-26 2020-04-02
 United States hCoV-19/USA/CA_2602/2020
 G14718T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_419656
 2020-02-26 2020-04-03
 Austria hCoV-19/Austria/CeMM0003/2020
 C241T C3037T G12832A C14408T A23403G GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_421246
 2020-02-26 2020-04-07
 China hCoV-19/Nanchang/JXN3T4/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C8782T T28144C AAAAAAAAAAAA29892-

EPI_ISL_427809
 2020-02-26 2020-04-19
 South Korea hCoV-19/Korea/KCDC2015/2020
 ATTAAAGGTTTATACC1- CA117TG G5572T G11083T C14805T G26144T C28311T A29871T AAAAAAAAAAAAAAAA29888-

EPI_ISL_430126 MT627627
 2020-02-26 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S272/2020
 A4494G C8782T C17747T A17858G C18060T T28144C

EPI_ISL_435580
 2020-02-26 2020-05-05
 United States hCoV-19/USA/CA-SCCPHD-UC101/2020
 G14718T

EPI_ISL_450747
 2020-02-26 2020-05-22
 Canada hCoV-19/Canada/ON_SHSC-01/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C835T C884T G1397A G8653T G11083T T28688C AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_454996
 2020-02-26 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM-116/2020
 C6720T C8782T C21034T T28144C

EPI_ISL_455007
 2020-02-26 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM2-272/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- C965T T4873C T13243C T14684C A26098T

EPI_ISL_457698 CNA0013992
 2020-02-26 2020-06-02
 China Guangzhou/GZMU0117/2020
 T3160C G6819T C17373T C21711T G29527A AAAAAAAAAAAA29892-

EPI_ISL_460082
 2020-02-26 2020-06-05
 Italy hCoV-19/Italy/BG-9209-26Feb/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A20268G A23403G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_460083
 2020-02-26 2020-06-05
 Italy hCoV-19/Italy/BG-9225-26Feb/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G A26530G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_460087
 2020-02-26 2020-06-05
 Italy hCoV-19/Italy/CR-9206-26Feb/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_460088
 2020-02-26 2020-06-05
 Italy hCoV-19/Italy/CR-9214-26Feb/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C3037T C14408T C23191T A23403G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_460089
 2020-02-26 2020-06-05
 Italy hCoV-19/Italy/CR-9491-26Feb/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T C14408T A23403G GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_460095
 2020-02-26 2020-06-05
 Italy hCoV-19/Italy/PV-9675-26Feb/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T C14980T A20268G A23403G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_464187
 2020-02-26 2020-06-11
 United Kingdom hCoV-19/England/20096051004/2020
 T3628Y G11083T C11976Y

EPI_ISL_464195
 2020-02-26 2020-06-11
 United Kingdom hCoV-19/England/20098017604/2020
 C241T C3037T C7420T C14408T A23403G

EPI_ISL_475544
 2020-02-26 2020-06-23
 Sweden hCoV-19/Sweden/20-04736/2020
 T1391G G1397A C3393T T14577C T28688C G29742T

EPI_ISL_479826
 2020-02-26 2020-07-01
 Japan hCoV-19/Japan/PG-0071/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C11752T G16636T C19170A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480048
 2020-02-26 2020-07-01
 Japan hCoV-19/Japan/PG-0378/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- G3179A C6982T C8782T T28144C TAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29817-

EPI_ISL_480049
 2020-02-26 2020-07-01
 Japan hCoV-19/Japan/PG-0379/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- G3179A C6982T C8782T G25106A T28144C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_485398 MT730002
 2020-02-26 2020-07-08
 South Korea SARS-CoV-2/human/KOR/2020-CoV55_Nasopharynx/2020
 ATTAAAGGTTTATAC1- T3142C G5572T G11083T C14805T G26144T AAAAAAAAAAAAAAAA29888-

EPI_ISL_486664
 2020-02-26 2020-07-10
 Italy hCoV-19/Italy/Hsacco-8/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

EPI_ISL_490010 MT755897
 2020-02-26 2020-07-14
 Saudi Arabia SARS-CoV-2/human/SAU/656/2020
 C241T C3037T G3476A C14408T C18877T A23403G G25563T G25687T C26735T

EPI_ISL_497995
 2020-02-26 2020-07-26
 South Korea hCoV-19/Korea/KCDC2094/2020
 G5572T G11083T C14805T C19145T G26144T

EPI_ISL_510547
 2020-02-26 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2203/2020
 AC27- A29T C32A G5572T G11083T C14805T G26144T C28311T

EPI_ISL_516083 MT479216
 2020-02-26 2020-05-18
 Italy SARS-CoV-2/human/ITA/71205/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C3037T C14408T G22205S A23403G T25464Y A26530G GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_527916
 2020-02-26 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42167340/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C313T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_527917
 2020-02-26 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42167842/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T T19839C A23403G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_530022
 2020-02-26 2020-09-10
 Spain hCoV-19/Spain/MD-H12-96/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G5411A C6541T A11830G C14408T A20268G A23403G ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

MT276324
 2020-02-26 2020-04-02
 United States SARS-CoV-2/human/USA/CA_2602/2020
 G14718T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_412972
 2020-02-27 2020-03-01
 Mexico hCoV-19/Mexico/CDMX-InDRE_01/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_413020
 2020-02-27 2020-03-03
 Switzerland hCoV-19/Switzerland/1000477377/2020
 C241T C3037T C3373A C14408T A23403G GGG28881AAC G29422T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_413025 MT163716
 2020-02-27 2020-03-03
 United States SARS-CoV-2/human/USA/WA3-UW1/2020
 A1T AC35TT T2446C C3411T G5572T G11083T C14805T G26144T G29864A TG29867AA C29870A

EPI_ISL_413490
 2020-02-27 2020-03-05
 New Zealand hCoV-19/New Zealand/01/2020
 G1397A G11083T G25618A T28688C G29742T

EPI_ISL_413513
 2020-02-27 2020-03-06
 South Korea hCoV-19/South Korea/KUMC03/2020
 ATTAAAGGTTTA1- T4402C G5062T C8782T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_413514
 2020-02-27 2020-03-06
 South Korea hCoV-19/South Korea/KUMC04/2020
 ATTAAAGGTTTA1- T4402C G5062T C8782T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_413515
 2020-02-27 2020-03-06
 South Korea hCoV-19/South Korea/KUMC05/2020
 ATTAAAGGTTTA1- T4402C G5062T C8782T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_413516
 2020-02-27 2020-03-06
 South Korea hCoV-19/South Korea/KUMC06/2020
 ATTAAAGGTTTA1- T4402C G5062T C8782T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_413555
 2020-02-27 2020-03-07
 United Kingdom hCoV-19/Wales/PHW1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_413558 MT419831
 2020-02-27 2020-03-07
 United States SARS-CoV-2/human/USA/CA-CDPH-UC2/2020
 C9924T A15641C TAT29832CTG

EPI_ISL_413559 MT419830
 2020-02-27 2020-03-07
 United States SARS-CoV-2/human/USA/CA-CDPH-UC3/2020
 C21T C9924T C9951T

EPI_ISL_413999
 2020-02-27 2020-03-10
 Switzerland hCoV-19/Switzerland/AG0361/2020
 ATTAAAGGTTT1- C241T C3037T C14408T G20398A A23403G A26530G AAAAA29899-

EPI_ISL_414008
 2020-02-27 2020-03-10
 United Kingdom hCoV-19/England/200960041/2020
 G1397A G11083T C12249T G21641K C21658T T28688C G29742T

EPI_ISL_414012
 2020-02-27 2020-03-10
 United Kingdom hCoV-19/England/200990723/2020
 C241T C3037T G11842A C14408T A23403G GGG28881AAC

EPI_ISL_414019
 2020-02-27 2020-03-10
 Switzerland hCoV-19/Switzerland/GE3121/2020
 ATTAAAG1- C241T C3037T C14408T A20268G A23403G AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_414020
 2020-02-27 2020-03-10
 Switzerland hCoV-19/Switzerland/GE5373/2020
 ATTAAAGGTTT1- C241T C3037T C14408T A20268G A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_414021
 2020-02-27 2020-03-10
 Switzerland hCoV-19/Switzerland/BL0902/2020
 ATTAAAGGTT1- C241T C3037T C14408T T19839C A23403G GGG28881AAC AAA29901-

EPI_ISL_414022
 2020-02-27 2020-03-10
 Switzerland hCoV-19/Switzerland/GE9586/2020
 ATTAAAGG1- C241T C3037T C14408T T19839C A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_414505 MT582494
 2020-02-27 2020-03-13
 Germany SARS-CoV-2/human/DEU/NRW-06/2020
 G1440A G2891A

EPI_ISL_414523
 2020-02-27 2020-03-13
 United Kingdom hCoV-19/England/200990660/2020
 C241T C3037T C14408T A23403G C25350T

EPI_ISL_414686
 2020-02-27 2020-03-16
 China hCoV-19/Guangzhou/GZMU0030/2020/P2
 ATTAAAGGTTTA1- C186T C1734T G26458T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_415641
 2020-02-27 2020-03-18
 Georgia hCoV-19/Georgia/Tb-54/2020
 ATTAAAGGTTTATACCTTCCCAGG1- A915G G11083T G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_415698
 2020-02-27 2020-03-19
 Switzerland hCoV-19/Switzerland/GR2988/2020
 ATTA1- C241T C3037T C13176T C14408T A23403G GGG28881AAC

EPI_ISL_415699
 2020-02-27 2020-03-19
 Switzerland hCoV-19/Switzerland/GR3043/2020
 ATTAAAGGT1- C241T C3037T C13176T C14408T A23403G GGG28881AAC

EPI_ISL_415743 MT370518
 2020-02-27 2020-03-19
 Taiwan SARS-CoV-2/human/TWN/CGMH-CGU-05/2020
 C1059T G1397A G11083T C23934T T28648C T28688C G29742T

EPI_ISL_416484 MT233519
 2020-02-27 2020-03-22
 Spain SARS-CoV-2/human/ESP/Valencia5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417096 MT627276
 2020-02-27 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S43/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417483
 2020-02-27 2020-03-26
 Norway hCoV-19/Norway/1379/2020
 ATTAAAG1- C1346M G11083T C14805T G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_419555
 2020-02-27 2020-04-02
 United States hCoV-19/USA/WA_5030/2020
 T2446C C3411T G5572T G11083T C14805T G26144T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_419558
 2020-02-27 2020-04-02
 United States hCoV-19/USA/OR_2656/2020
 G11083T C14805T G26144T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_420799 MT304474
 2020-02-27 2020-04-06
 South Korea SARS-CoV-2/human/KOR/BA-ACH_2604/2020
 G5572T G11083T C14805T G26144T C28311T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_428830
 2020-02-27 2020-04-22
 Singapore hCoV-19/Singapore/51/2020
 ATTAAA1- C8782T ACTTGAACTGCAAGATCATAATGAAACTTGTCACGCCTAAACGAACATGAAATTTCTTGTTTTCTTAGGAATCATCACAACTGTAGCTGCATTTCACCAAGAATGTAGTTTACAGTCATGTACTCAACATCAACCATATGTAGTTGATGACCCGTGTCCTATTCACTTCTATTCTAAATGGTATATTAGAGTAGGAGCTAGAAAATCAGCACCTTTAATTGAATTGTGCGTGGATGAGGCTGGTTCTAAATCACCCATTCAGTACATCGATATCGGTAATTATACAGTTTCCTGTTTACCTTTTACAATTAATTGCCAGGAACCTAAATTGGGTAGTCTTGTAGTGCGTTGTTCGTTCTATGAAGACTTTTTAGAGTATCAT27848- GTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29759-

EPI_ISL_430847
 2020-02-27 2020-04-28
 Sweden hCoV-19/Sweden/20-04631/2020
 G1397A A7970G G11083T G14653A C18788T T28688C G29742T

EPI_ISL_437993
 2020-02-27 2020-05-12
 Austria hCoV-19/Austria/CeMM0143/2020
 C241T C3037T G12832A C14408T A23403G GGG28881AAC A29865R AAAAAAAAAAAAAA29890-

EPI_ISL_450512
 2020-02-27 2020-05-21
 Lebanon hCoV-19/Lebanon/S5_762/2020
 G8A C884T G1397A C1884T A7766G G8653T G11083T C25578T T28688C G29742T

EPI_ISL_454750
 2020-02-27 2020-05-29
 Netherlands hCoV-19/Netherlands/NoordHolland_10001/2020
 ATTA1- C241T C3037T C14408T A23403G GGG28881AAC T29148C AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_454916
 2020-02-27 2020-05-29
 China hCoV-19/Wuhan/HB-WH1-140/2020
 C17690T C22482T

EPI_ISL_454992
 2020-02-27 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM-109/2020
 G26144T

EPI_ISL_457749
 2020-02-27 2020-06-02
 Italy hCoV-19/Italy/484/2020
 ATTAAA1- C241T C3037T C14408T A23403G A26530G GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_464193
 2020-02-27 2020-06-11
 United Kingdom hCoV-19/England/20098017204/2020
 C635Y C7735Y G11083T C11976Y C28253Y

EPI_ISL_464194
 2020-02-27 2020-06-11
 United Kingdom hCoV-19/England/20098017504/2020
 C241T C3037T C14408T A23403G C25350T

EPI_ISL_470851
 2020-02-27 2020-06-19
 Australia hCoV-19/Australia/WA34/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C9333T G11083T C11671T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_476559
 2020-02-27 2020-06-25
 Morocco hCoV-19/Morocco/refstage1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_479827
 2020-02-27 2020-07-01
 Japan hCoV-19/Japan/PG-0072/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- A10276G C11752T C19170A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479828
 2020-02-27 2020-07-01
 Japan hCoV-19/Japan/PG-0074/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAAC1- C11752T C19170A A29433G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_490011 MT755898
 2020-02-27 2020-07-14
 Saudi Arabia SARS-CoV-2/human/SAU/671/2020
 C66T C241T C3037T T4096C C5700T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_497996
 2020-02-27 2020-07-26
 South Korea hCoV-19/Korea/KCDC2095/2020
 ATTAAAGGTTTATACC1- G5572T G11083T C14805T C25416T G26144T AATGACAAAAAAAAAAAA29865- A29885G

EPI_ISL_497998
 2020-02-27 2020-07-26
 South Korea hCoV-19/Korea/KCDC2097/2020
 ATTAA1- C203T G5572T G11083T C14805T G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_506948
 2020-02-27 2020-08-02
 South Korea hCoV-19/Korea/KCDC2154/2020
 ATTAA1- G256T G5572T G11083T C14805T C21575T G26144T C29098T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_506949
 2020-02-27 2020-08-02
 South Korea hCoV-19/Korea/KCDC2155/2020
 AT1- G256T G5572T G11083T C14805T C21575T G26144T C29098T

EPI_ISL_530023
 2020-02-27 2020-09-10
 Spain hCoV-19/Spain/MD-H12-97/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T A12048G C13115T T25541C C26088T T28144C ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_547499
 2020-02-27 2020-09-24
 Netherlands hCoV-19/Netherlands/NH-RIVM-10073/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G T24079A GGG28881AAC T29148C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT276325
 2020-02-27 2020-04-02
 United States SARS-CoV-2/human/USA/WA_5030/2020
 T2446C C3411T G5572T G11083T C14805T G26144T AAAAAAAAAAAAAAAAAAAAA29883-

MT276328
 2020-02-27 2020-04-02
 United States SARS-CoV-2/human/USA/OR_2656/2020
 G11083T C14805T G26144T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_412975
 2020-02-28 2020-03-02
 Australia hCoV-19/Australia/NSW05/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1397A G4255A G11083T A20047G T28688C G29742T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_413016
 2020-02-28 2020-03-02
 Brazil hCoV-19/Brazil/SPBR-02/2020
 C2388T G11083T C14805T T17247C G26144T

EPI_ISL_413455 MT163717
 2020-02-28 2020-03-04
 United States SARS-CoV-2/human/USA/WA4-UW2/2020
 ATTAAA1- C8782T C17747T A17858G C18060T T28144C TG29867AA C29870A

EPI_ISL_413488 MT582499
 2020-02-28 2020-03-05
 Germany SARS-CoV-2/human/DEU/NRW-01/2020
 G1440A G2891A C4655T G8422A C22323T C29546A

EPI_ISL_413557 MT419829
 2020-02-28 2020-03-07
 United States SARS-CoV-2/human/USA/CA-CDPH-UC1/2020
 C5184T C8782T C17747T A17858G C18060T T28144C C29253T

EPI_ISL_413560 MT598634
 2020-02-28 2020-03-07
 United States SARS-CoV-2/human/USA/WA-S3/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_413594
 2020-02-28 2020-03-08
 Australia hCoV-19/Australia/NSW08/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- G25323T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_413595
 2020-02-28 2020-03-09
 Australia hCoV-19/Australia/NSW09/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C884T G1397A G8653T G11083T C24381T G28457A T28688C C29627T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_413596
 2020-02-28 2020-03-08
 Australia hCoV-19/Australia/NSW10/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- T18351Y G25323T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_414006
 2020-02-28 2020-03-10
 United Kingdom hCoV-19/England/200990724/2020
 A2480G C2558T C14805T T21072C G26144T

EPI_ISL_414007
 2020-02-28 2020-03-10
 United Kingdom hCoV-19/England/200990725/2020
 A2480G C2558T C14805T T21072C G26144T

EPI_ISL_414509 MT582491
 2020-02-28 2020-03-13
 Germany SARS-CoV-2/human/DEU/NRW-09/2020
 G1440A G2891A C27849T

EPI_ISL_414522
 2020-02-28 2020-03-13
 United Kingdom hCoV-19/England/200990002/2020
 G1397A A3263G A8981G G9479T A9514G T9931C T28688C G29742T

EPI_ISL_415454
 2020-02-28 2020-03-17
 Switzerland hCoV-19/Switzerland/GE1422/2020
 ATTAAAG1- C241T C3037T C10834T C14408T A23403G GGG28881AAC T29148C

EPI_ISL_415455
 2020-02-28 2020-03-17
 Switzerland hCoV-19/Switzerland/GE0199/2020
 ATTAAAGGTTT1- C241T C3037T C14408T T19839C A23403G GGG28881AAC

EPI_ISL_415700
 2020-02-28 2020-03-19
 Switzerland hCoV-19/Switzerland/GE1402/2020
 ATTAAAGGTTTAT1- C241T C3037T C14408T A23403G GGG28881AAC T29148C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416143
 2020-02-28 2020-03-20
 Denmark hCoV-19/Denmark/SSI-02/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C3037T T13402G C14408T A23403G GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_417093 MT627286
 2020-02-28 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S40/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417095 MT627295
 2020-02-28 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S42/2020
 C5784T C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417097 MT627275
 2020-02-28 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S44/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417147 MT627258
 2020-02-28 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S94/2020
 C8782T C14805T C17747T A17858G C18060T T28144C

EPI_ISL_417148 MT627235
 2020-02-28 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S95/2020
 C1326T C8782T C17304T C17747T A17858G C18060T T28144C

EPI_ISL_417149 MT627226
 2020-02-28 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S96/2020
 C1326T C8782T C17304T C17747T A17858G C18060T T28144C

EPI_ISL_417150 MT627219
 2020-02-28 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S97/2020
 C8782T C17304T C17747T A17858G C18060T T28144C

EPI_ISL_417152 MT627318
 2020-02-28 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S99/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417154 MT627290
 2020-02-28 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S101/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417155 MT627274
 2020-02-28 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S102/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417156 MT627253
 2020-02-28 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S103/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417158 MT627252
 2020-02-28 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S105/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417922 MT527178
 2020-02-28 2020-03-27
 Italy SARS-CoV-2/human/ITA/INMI4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATC1- C241T C3037T C14408T A23403G GGG28881AAC TGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29809-

EPI_ISL_418220
 2020-02-28 2020-03-29
 France hCoV-19/France/HF1645/2020
 C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_418243
 2020-02-28 2020-03-29
 Spain hCoV-19/Spain/Andalucia201272/2020
 G11083T C14805T C23707T G26144T T27384C AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_418382
 2020-02-28 2020
 Canada hCoV-19/Canada/ON_PHL5930/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C3037T C14408T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418799
 2020-02-28 2020-03-31
 Australia hCoV-19/Australia/QLDID922/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C15324T A15477G T21644C C24130T C29303T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_418995
 2020-02-28 2020-04-01
 Singapore hCoV-19/Singapore/12Clin/2020
 C8782T C25568A ACTTGAACTGCAAGATCATAATGAAACTTGTCACGCCTAAACGAACATGAAATTTCTTGTTTTCTTAGGAATCATCACAACTGTAGCTGCATTTCACCAAGAATGTAGTTTACAGTCATGTACTCAACATCAACCATATGTAGTTGATGACCCGTGTCCTATTCACTTCTATTCTAAATGGTATATTAGAGTAGGAGCTAGAAAATCAGCACCTTTAATTGAATTGTGCGTGGATGAGGCTGGTTCTAAATCACCCATTCAGTACATCGATATCGGTAATTATACAGTTTCCTGTTTACCTTTTACAATTAATTGCCAGGAACCTAAATTGGGTAGTCTTGTAGTGCGTTGTTCGTTCTATGAAGACTTTTTAGAGTATCAT27848- AAAAAAAAAAAA29892-

EPI_ISL_419553 MT276323
 2020-02-28 2020-04-02
 United States SARS-CoV-2/human/USA/RI_0520/2020
 C241T C3037T C3369T C6190T C14408T A20268G A23403G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_419559 MT276329
 2020-02-28 2020-04-02
 United States SARS-CoV-2/human/USA/FL_5125/2020
 C241T C313T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_419560 MT276330
 2020-02-28 2020-04-02
 United States SARS-CoV-2/human/USA/FL_5091/2020
 A5995G C8782T C16457T A17858G C18060T C22480T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_420135
 2020-02-28 2020-04-05
 Norway hCoV-19/Norway/1455/2020
 ATTAAAGGTT1- T7876A G11083T T22392Y A22404W G22454R G22462K G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_425178
 2020-02-28 2020-04-14
 Spain hCoV-19/Spain/Valencia54/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_430272 MT632567
 2020-02-28 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S234/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_437994
 2020-02-28 2020-05-12
 Austria hCoV-19/Austria/CeMM0146/2020
 C241T C3037T G12832A C14408T A23403G GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_437995
 2020-02-28 2020-05-12
 Austria hCoV-19/Austria/CeMM0147/2020
 C241T G2447K C3037T G12832A C14408T G14701K C14703Y T22521K A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_452139
 2020-02-28 2020-05-26
 Mexico hCoV-19/Mexico/CDMX-InDRE_07/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23403G GGG28881AAC TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_454751
 2020-02-28 2020-05-29
 Netherlands hCoV-19/Netherlands/NoordHolland_10002/2020
 ATTA1- C241T C3037T A6314T T7570C A10018T C14408T G15392A A23403G GGG28881AAC T29148C GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_454752
 2020-02-28 2020-05-29
 Netherlands hCoV-19/Netherlands/NoordBrabant_10003/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- T514C ATG1605- C17410T G25116T AAAAAAAAAAAAAAAAAAAA29884-

EPI_ISL_454753
 2020-02-28 2020-05-29
 Netherlands hCoV-19/Netherlands/ZuidHolland_10004/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C3037T C14408T A23403G GGG28881AAC TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_454754
 2020-02-28 2020-05-29
 Netherlands hCoV-19/Netherlands/ZuidHolland_10005/2020
 ATTAAA1- C241T C3037T C14408T A18172T A23403G GGG28881AAC AAAAAA29898-

EPI_ISL_454922
 2020-02-28 2020-05-29
 China hCoV-19/Wuhan/HB-WH2-152/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- T25382C

EPI_ISL_454923
 2020-02-28 2020-05-29
 China hCoV-19/Wuhan/HB-WH2-155/2020
 G10412T A18114G T25382C

EPI_ISL_454924
 2020-02-28 2020-05-29
 China hCoV-19/Wuhan/HB-WH2-156/2020
 C17894T G25074T

EPI_ISL_454925
 2020-02-28 2020-05-29
 China hCoV-19/Wuhan/HB-WH2-157/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- G6622T G10412T ATA17609- C22482T

EPI_ISL_454926
 2020-02-28 2020-05-29
 China hCoV-19/Wuhan/HB-WH2-158/2020
 C9534A A17423G C28854T

EPI_ISL_454927
 2020-02-28 2020-05-29
 China hCoV-19/Wuhan/HB-WH2-159/2020
 G10412T

EPI_ISL_454928
 2020-02-28 2020-05-29
 China hCoV-19/Wuhan/HB-WH2-160/2020
 

EPI_ISL_454929
 2020-02-28 2020-05-29
 China hCoV-19/Wuhan/HB-WH2-161/2020
 AAGATTTTC729- G3013T C8529T C17690T

EPI_ISL_454939
 2020-02-28 2020-05-29
 China hCoV-19/Wuhan/HB-WH3-173/2020
 AAGATTTTC729- G3013T C22482T

EPI_ISL_454940
 2020-02-28 2020-05-29
 China hCoV-19/Wuhan/HB-WH3-176/2020
 

EPI_ISL_454993
 2020-02-28 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM-113/2020
 G26144T

EPI_ISL_455314
 2020-02-28 2020-05-29
 Spain hCoV-19/Spain/Andalucia201257/2020
 AT1- C6449T C8782T TG8827AT C16267T G16507T A19659G A20264C T28144C

EPI_ISL_455373
 2020-02-28 2020-05-29
 China hCoV-19/Wuhan/HB-WH2-154/2020
 G18412- T26330C

EPI_ISL_455376
 2020-02-28 2020-05-29
 China hCoV-19/Wuhan/HB-WH3-174/2020
 C8782T C19154T C26447G T28144C T28250G A28254- C29095T G29179T

EPI_ISL_460080
 2020-02-28 2020-06-05
 Italy hCoV-19/Italy/BG-11639-28Feb/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T A2342G C3037T C14408T A23403G GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_460090
 2020-02-28 2020-06-05
 Italy hCoV-19/Italy/LO-11550-28Feb/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T C17676T A23403G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_460092
 2020-02-28 2020-06-05
 Italy hCoV-19/Italy/PV-11951-28Feb/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A20268G A23403G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_464199
 2020-02-28 2020-06-11
 United Kingdom hCoV-19/England/20099000304/2020
 G1397A G11083T C12249Y C21658T T28688C G29742T

EPI_ISL_464201
 2020-02-28 2020-06-11
 United Kingdom hCoV-19/England/20099000804/2020
 C7735Y G11083T C20956Y C22432G C25521Y C27735Y C28253Y

EPI_ISL_464219
 2020-02-28 2020-06-11
 United Kingdom hCoV-19/England/20099071804/2020
 C241T C3037T C14408T G19406A A23403G

EPI_ISL_464224
 2020-02-28 2020-06-11
 United Kingdom hCoV-19/England/20099072604/2020
 A2480G C2558T G11083T C14805T T21072C G22427R G26144T

EPI_ISL_464228
 2020-02-28 2020-06-11
 United Kingdom hCoV-19/England/20099089504/2020
 G1397A C2881Y G4866A A9514G G11083T A17799G T28688C G29742T

EPI_ISL_469253 MT627325
 2020-02-28 2020-06-16
 China SARS-CoV-2/human/CHN/Shanghai_CH-02/2020
 ATTAAAG1- C14676T C19884T C23525T C28826T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_475545
 2020-02-28 2020-06-23
 Sweden hCoV-19/Sweden/20-04850/2020
 G1397A A7970G G14653A C18788T T28688C G29742T

EPI_ISL_475546
 2020-02-28 2020-06-23
 Sweden hCoV-19/Sweden/20-04851/2020
 G1397A A7970G G14653A C18788T T28688C G29742T

EPI_ISL_475547
 2020-02-28 2020-06-23
 Sweden hCoV-19/Sweden/20-04852/2020
 G1397A A7970G G14653A C18788T T28688C G29742T

EPI_ISL_475836
 2020-02-28 2020-06-25
 Austria hCoV-19/Austria/CeMM0401/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10039T G12832A C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479803
 2020-02-28 2020-07-01
 Japan hCoV-19/Japan/PG-0033/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C11752T TAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29817-

EPI_ISL_479829
 2020-02-28 2020-07-01
 Japan hCoV-19/Japan/PG-0076/2020
 ATTAAAGGTTT1- C11752T C19170A AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_479830
 2020-02-28 2020-07-01
 Japan hCoV-19/Japan/PG-0077/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C11752T C19170A ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_479913
 2020-02-28 2020-07-01
 Japan hCoV-19/Japan/PG-0213/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- T4402C G5062T C8782T T28144C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_506950
 2020-02-28 2020-08-02
 South Korea hCoV-19/Korea/KCDC2156/2020
 ATTAAA1- G256T G5572T G11083T C14805T C21575T G26144T C29098T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_506952
 2020-02-28 2020-08-02
 South Korea hCoV-19/Korea/KCDC2158/2020
 ATTA1- G256T G5572T G11083T C14805T C21575T G26144T C29098T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_506953
 2020-02-28 2020-08-02
 South Korea hCoV-19/Korea/KCDC2159/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- G256T G5572T G11083T C14805T T20177C C21575T G26144T C29098T

EPI_ISL_508933
 2020-02-28 2020-08-04
 France hCoV-19/France/ARA05288/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAA1- C241T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_516084 MT483875
 2020-02-28 2020-05-19
 Italy SARS-CoV-2/human/ITA/73696/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T C3037T C14408T A23403G A26530G GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_516085 MT483881
 2020-02-28 2020-05-19
 Italy SARS-CoV-2/human/ITA/73702/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C1302Y C3037T C14408T T21765W A23403G A26530G GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_530024
 2020-02-28 2020-09-10
 Spain hCoV-19/Spain/MD-H12-98/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_537558
 2020-02-28 2020-09-16
 United States hCoV-19/USA/CA-UCLA-260/2020
 ATTAAAGGTTTAT1- C313T G1397A C7594A G11083T G20238T T28688C G29742T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_539497
 2020-02-28 2020-09-18
 Spain hCoV-19/Spain/AN-ISCIII-201273/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A436C C8438T A8445T A8456T A8472G G8491A G11083T C14805T G19620A C21263T C23707T C26088T A26108G GAAT29864-

EPI_ISL_539557
 2020-02-28 2020-09-18
 Spain hCoV-19/Spain/EX-ISCIII-201239/2020
 C241T C3037T C8319T C14408T T19597A A19673G A22168G A23403G A26530G

EPI_ISL_539558
 2020-02-28 2020-09-18
 Spain hCoV-19/Spain/EX-ISCIII-201248/2020
 C6449T T16324C TT16478AC G16745A C16792T C22444T C26088T T28144C

GWHAORF01000001
 2020-02-28 2020-09-11
 China SARS-CoV-2/human/CHN/Beijing-P3.1/2020
 G13617T G26144T

MT126808
 2020-02-28 2020-03-01
 Brazil SARS-CoV-2/human/BRA/SP02/2020
 G11083T C14805T T17247C G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_413021
 2020-02-29 2020-03-03
 Switzerland hCoV-19/Switzerland/1000477757/2020
 C241T C959T C3037T C5812Y G10265A C14408T A23403G T27618C GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_413022
 2020-02-29 2020-03-03
 Switzerland hCoV-19/Switzerland/1000477796/2020
 C241T C3037T C14408T A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_413023
 2020-02-29 2020-03-03
 Switzerland hCoV-19/Switzerland/1000477797/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C313T C3037T C14408T A22168C A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_413024
 2020-02-29 2020-03-03
 Switzerland hCoV-19/Switzerland/1000477806/2020
 C241T C3037T C13647Y C14408T T19839C A23403G G26227K GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_413213
 2020-02-29 2020-03-04
 Australia hCoV-19/Australia/NSW06/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C884T G1397A G8653T G11083T C24904T T28688C G29742T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_413214
 2020-02-29 2020-03-04
 Australia hCoV-19/Australia/NSW07/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1397A G11083T T28688C G29374A G29742T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_413457 MT163718
 2020-02-29 2020-03-05
 United States SARS-CoV-2/human/USA/WA6-UW3/2020
 A1T TAAA3GGTT C20S C8782T C17747T A17858G C18060T T28144C

EPI_ISL_413593
 2020-02-29 2020-03-07
 Luxembourg hCoV-19/Luxembourg/Lux1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T C14408T A23403G C23575T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_414015
 2020-02-29 2020-03-10
 Brazil hCoV-19/Brazil/SPBR-06/2020
 ATTA1- C241T C3037T C14408T A23403G AAAAAAAAAAAAA29891-

EPI_ISL_414016
 2020-02-29 2020-03-10
 Brazil hCoV-19/Brazil/SPBR-05/2020
 C241T C3037T C14408T A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_414414
 2020-02-29 2020-03-12
 Australia hCoV-19/Australia/QLD09/2020
 ATTAAA1- G1397A C11074T G11083T T28688C G29374A G29742T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_414476 MT370904
 2020-02-29 2020-03-12
 United States SARS-CoV-2/human/USA/NY1-PV08001/2020
 G1397A G3242A A9514G G11083T C25214T T28688C G29027T G29742T

EPI_ISL_414626
 2020-02-29 2020-03-15
 France hCoV-19/France/HF1684/2020
 C241T C2416T C3037T C14408T A23403G G25563T

EPI_ISL_415128
 2020-02-29 2020-03-16
 Brazil hCoV-19/Brazil/ES-225/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A2480G C2558T C4423T G11083T C14805T G26144T TGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29793-

EPI_ISL_415129
 2020-02-29 2020-03-16
 United Kingdom hCoV-19/England/20099038206/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_415159
 2020-02-29 2020-03-16
 Belgium hCoV-19/Belgium/BA-02291/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1666C C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_415456
 2020-02-29 2020-03-17
 Switzerland hCoV-19/Switzerland/BE6651/2020
 ATTA1- C241T C3037T C6861T C14408T T19839C A23403G GGG28881AAC

EPI_ISL_415457
 2020-02-29 2020-03-17
 Switzerland hCoV-19/Switzerland/AG7120/2020
 ATTAAAG1- C241T C3037T C14408T A23403G GGG28881AAC T29148C

EPI_ISL_415459
 2020-02-29 2020-03-17
 Switzerland hCoV-19/Switzerland/VD0503/2020
 ATTAAAGGTTT1- C241T C3037T G13503T C14408T A23403G GGG28881AAC

EPI_ISL_416460 MT598640
 2020-02-29 2020-03-22
 United States SARS-CoV-2/human/USA/WA-S5/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_416461 MT598639
 2020-02-29 2020-03-22
 United States SARS-CoV-2/human/USA/WA-S6/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_416465 MT598641
 2020-02-29 2020-03-22
 United States SARS-CoV-2/human/USA/WA-S10/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_416742
 2020-02-29 2020-03-23
 Czech Republic hCoV-19/Czech Republic/ChVir1630/2020
 ATTAAAGGTTTATAC1- C241T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_417098 MT627307
 2020-02-29 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S45/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417099 MT627299
 2020-02-29 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S46/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417100 MT627267
 2020-02-29 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S47/2020
 C5784T C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417101 MT627279
 2020-02-29 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S48/2020
 C5784T C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417108 MT627293
 2020-02-29 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S55/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417142 MT627233
 2020-02-29 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S89/2020
 C8782T C15240T C17747T A17858G C18060T C21774T T28144C

EPI_ISL_417143 MT627243
 2020-02-29 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S90/2020
 C8782T C15240T C17747T A17858G C18060T C21774T T28144C

EPI_ISL_417145 MT627261
 2020-02-29 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S92/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417146 MT627269
 2020-02-29 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S93/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417151 MT627248
 2020-02-29 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S98/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417153 MT627315
 2020-02-29 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S100/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417159 MT627216
 2020-02-29 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S106/2020
 C5622T C8782T C17747T A17858G C18060T T23010C T28144C

EPI_ISL_417160 MT627245
 2020-02-29 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S107/2020
 C8782T C17747T A17858G C18060T T23010C T28144C

EPI_ISL_417161 MT627304
 2020-02-29 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S108/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417168 MT627312
 2020-02-29 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S115/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417172 MT627242
 2020-02-29 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S119/2020
 C8782T G14638T C17747T A17858G C18060T T28144C

EPI_ISL_417318 MT419841
 2020-02-29 2020-03-25
 United States SARS-CoV-2/human/USA/CA-SCCPHD-UC14/2020
 G29711T

EPI_ISL_417488
 2020-02-29 2020-03-26
 Norway hCoV-19/Norway/1493/2020
 ATTAAAGGTT1- T7876A G11083T G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_418344
 2020-02-29 2020
 Canada hCoV-19/Canada/ON_PHL2259/2020
 A1- C241T C3037T C14408T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418345
 2020-02-29 2020-02-29
 Canada hCoV-19/Canada/ON_PHL8751/2020
 A1- C241T C3037T C14408T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_419556 MT276326
 2020-02-29 2020-04-02
 United States SARS-CoV-2/human/USA/GA_2741/2020
 C241T C3037T C14408T G18898T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_419557 MT276327
 2020-02-29 2020-04-02
 United States SARS-CoV-2/human/USA/GA_2742/2020
 C241T C3037T C14408T G18898T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_420791 MT304484
 2020-02-29 2020-04-06
 United States SARS-CoV-2/human/USA/NH_0004/2020
 C241T C1059T C3037T T13006C C14408T A23403G G25563T C25688T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_420796 MT304489
 2020-02-29 2020-04-06
 United States SARS-CoV-2/human/USA/TX_2039/2020
 C367Y G1785K C5208Y C9195Y C10747Y G10916K G11083T C12830Y C20703Y T22333Y C23492Y C29353T C29546T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_420800 MT304475
 2020-02-29 2020-04-06
 South Korea SARS-CoV-2/human/KOR/BA-ACH_2718/2020
 G5572T G11083T C14805T G26144T C28311T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_420801 MT304476
 2020-02-29 2020-04-06
 South Korea SARS-CoV-2/human/KOR/BA-ACH_2719/2020
 G5572T G11083T C14805T G26144T C28311T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_430135 MT627625
 2020-02-29 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S281/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_430160 MT632605
 2020-02-29 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S123/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_430273 MT632612
 2020-02-29 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S235/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_430281 MT632545
 2020-02-29 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S243/2020
 C8782T C17747T A17858G C18060T T28144C C28957T

EPI_ISL_430441
 2020-02-29 2020-04-27
 Malaysia hCoV-19/Malaysia/IMR_WC1097/2020
 ATTA1- A29881T AAAA29884TGCC A29889G A29891GTGTCTT A29893T A29897GTCTCT AA29902GGCCGGGCGCAGTGGC

EPI_ISL_430442
 2020-02-29 2020-04-27
 Malaysia hCoV-19/Malaysia/IMR_WC1098/2020
 ATTAAAGGTTT1- ATCAGACTCAGACTA23583- AAA29872GTG AA29877TG AAAAA29880TTGTG AAAA29886GCTT AA29892CC AAAAA29897TGGTG A29903CTCCAATTGC

EPI_ISL_430469
 2020-02-29 2020-04-27
 Greece hCoV-19/Greece/127_HPI/2020
 C241T C3037T C14408T A23403G G29868R AAAAAAAAAAAA29892-

EPI_ISL_435583
 2020-02-29 2020-05-05
 United States hCoV-19/USA/CA-SCCPHD-UC104/2020
 C241T C3037T C14408T C18877T A23403G G25563T

EPI_ISL_435587
 2020-02-29 2020-05-05
 United States hCoV-19/USA/CA-SCCPHD-UC108/2020
 G14718T C23430T

EPI_ISL_444274 MT479223
 2020-02-29 2020-05-13
 Taiwan SARS-CoV-2/human/TWN/CGMH-CGU-21/2020
 ATT1- C1059T G1397A C7521T G11083T A12555C C23606T C23934T T28648C T28688C G29742T

EPI_ISL_452332
 2020-02-29 2020-05-27
 China hCoV-19/Beijing/DT-travelUSA01/2020
 

EPI_ISL_455326
 2020-02-29 2020-05-29
 Spain hCoV-19/Spain/Canarias201939/2020
 C241T C3037T T4579A A6466G G10447A C14408T A23403G G25444T GGG28881AAC CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

EPI_ISL_455336
 2020-02-29 2020-05-29
 Spain hCoV-19/Spain/LaRioja201277/2020
 C8782T T9477A C14805T G24040T G25979T T28144C C28657T C28863T ATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29677-

EPI_ISL_455350
 2020-02-29 2020-05-29
 Spain hCoV-19/Spain/PaisVasco201385/2020
 A3765G G8353T G8553T C8782T T9477A C14805T T23926G C23934A TA24071CT G25979T T28144C C28657T C28863T T29840C TG29842AT T29846C TA29848GC T29851G CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_455351
 2020-02-29 2020-05-29
 Spain hCoV-19/Spain/PaisVasco201388/2020
 T8586A C8782T T9477A C14805T G25979T T28144C C28657T C28863T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_455793
 2020-02-29 2020-06-01
 Malaysia hCoV-19/Malaysia/IMR_WC1114/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- G677A G15689A T21408C G23607A TCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29834-

EPI_ISL_460084
 2020-02-29 2020-06-05
 Italy hCoV-19/Italy/BS-12256-29Feb/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A20268G A23403G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_461101
 2020-02-29 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_666/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- C17410T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_464212
 2020-02-29 2020-06-11
 United Kingdom hCoV-19/England/20099068604/2020
 G1397A A3263G A8981G G9479T A9514G T9931C G11083T T28688C G29742T

EPI_ISL_464215
 2020-02-29 2020-06-11
 United Kingdom hCoV-19/England/20099069504/2020
 C241T C3037T C14408T A23403G C25350T

EPI_ISL_464217
 2020-02-29 2020-06-11
 United Kingdom hCoV-19/England/20099070104/2020
 C11074T G11083T C14805T T17247C G26144T

EPI_ISL_479804
 2020-02-29 2020-07-01
 Japan hCoV-19/Japan/PG-0036/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCT1- C11752T TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_488388
 2020-02-29 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F565/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C25350T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_506951
 2020-02-29 2020-08-02
 South Korea hCoV-19/Korea/KCDC2157/2020
 ATTAAAGGTTTATA1- C16A G256T G5572T G11083T C14805T C21575T G26144T C29098T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_525575
 2020-02-29 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-10131-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- G1397A G3242A A9514G G11083T C25214T C27657T T28688C G29027T G29742T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_530025
 2020-02-29 2020-09-10
 Spain hCoV-19/Spain/MD-LP100-1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3990T C14408T A20268G A23403G G29734C ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_416741
 2020-02-xx 2020-03-23
 Lithuania hCoV-19/Lithuania/ChVir1632/2020
 ATTAAAGGTTT1- C241T C3037T C14408T A23403G A26530G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_434561
 2020-02-xx 2020-04-22
 Japan hCoV-19/Japan/TKYE6968/2020
 C1997T C8782T C27503T T28144C

EPI_ISL_447608 MT358638 MT539726
 2020-02-xx 2020-04-17
 Germany SARS-CoV-2/human/DEU/FFM1/2020
 G3518T G12704T G12797A A17423G T27272C C28854T

EPI_ISL_447609 MT358639
 2020-02-xx 2020-04-17
 Germany SARS-CoV-2/human/DEU/FFM3/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_447610 MT358640
 2020-02-xx 2020-04-17
 Germany SARS-CoV-2/human/DEU/FFM4/2020
 C241T C3037T A6228G C14408T C16289Y A23403G GGG28881AAC C28961T C29870M

EPI_ISL_447611 MT358641
 2020-02-xx 2020-04-17
 Germany SARS-CoV-2/human/DEU/FFM5/2020
 G1440A G2891A A23235G

EPI_ISL_447612 MT358642
 2020-02-xx 2020-04-17
 Germany SARS-CoV-2/human/DEU/FFM6/2020
 C241T C3037T A6228G C14408T A23403G GGG28881AAC C29870M

EPI_ISL_447613 MT358643
 2020-02-xx 2020-04-17
 Germany SARS-CoV-2/human/DEU/FFM7/2020
 C241T C3037T C14408T C15324T C23179Y A23403G

EPI_ISL_450210 MT270113
 2020-02-xx 2020-03-28
 Germany SARS-CoV-2/human/DEU/BavPat16-ChVir1530/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTG1- C241T C3037T G6446A A23403G GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_450211 MT270114
 2020-02-xx 2020-03-28
 Germany SARS-CoV-2/human/DEU/BavPat15-ChVir1484-ChVir1536/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A5714G A9019R T15152Y C17410T A17635R T20020Y A23403G C25466T A28549R CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_463220
 2020-02-xx 2020-06-10
 Canada hCoV-19/Canada/BC_25367465/2020
 A187G C241T C1616T C3037T C14408T A23403G C29311T

EPI_ISL_468724 LC553269
 2020-02-xx 2020-06-03
 Japan TKYE6938_2020
 ATTAAAGGTTTATA1- G11083T

EPI_ISL_479792
 2020-02-xx 2020-07-01
 Japan hCoV-19/Japan/PG-0003/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- A6561G C11752T C19170A TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_479793
 2020-02-xx 2020-07-01
 Japan hCoV-19/Japan/PG-0004/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C11752T C19170A ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_479794
 2020-02-xx 2020-07-01
 Japan hCoV-19/Japan/PG-0005/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C11752T C19170A ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_479795
 2020-02-xx 2020-07-01
 Japan hCoV-19/Japan/PG-0006/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACT1- C11752T C19170A A29433G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479796
 2020-02-xx 2020-07-01
 Japan hCoV-19/Japan/PG-0009/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C1059T C3037T C14408T A23403G G25563T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_479801
 2020-02-xx 2020-07-01
 Japan hCoV-19/Japan/PG-0022/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C11752T C19170A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479809
 2020-02-xx 2020-07-01
 Japan hCoV-19/Japan/PG-0045/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- G5008T C8782T G16381A T17877C T28144C G28878A G29742A TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_479810
 2020-02-xx 2020-07-01
 Japan hCoV-19/Japan/PG-0046/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- G5008T C8782T G16381A T17877C T28144C G28878A G29742A ATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29833-

EPI_ISL_479811
 2020-02-xx 2020-07-01
 Japan hCoV-19/Japan/PG-0048/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- G5008T C8782T T9093C G16381A T17877C C19269T T28144C G28878A G29742A AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_479825
 2020-02-xx 2020-07-01
 Japan hCoV-19/Japan/PG-0068/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T4351C G11083T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_479865
 2020-02-xx 2020-07-01
 Japan hCoV-19/Japan/PG-0143/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G1458T T7153C GG28903CT CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_479866
 2020-02-xx 2020-07-01
 Japan hCoV-19/Japan/PG-0144/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- G1458T G22632A GG28903CT CTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29803-

EPI_ISL_479867
 2020-02-xx 2020-07-01
 Japan hCoV-19/Japan/PG-0145/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- G1458T GG28903CT TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_507039
 2020-02-xx 2020-08-03
 South Korea hCoV-19/South Korea/CBNU-nCoV01/2020
 TA3CG -7AGTTGGTT T3086C C6255T C8782T G11083T G17122A T28144C -29865A AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

LC542976
 2020-02-xx 2020-04-20
 Japan TKYE6968_2020
 C1997T C8782T C27503T T28144C

MT276597
 2020-02-xx 2020-04-02
 Israel SARS-CoV-2/human/ISR/ISR_JP0320/2020
 ATTAAAGGTTTATACCTTCC1- CA21GG G11083T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871C

EPI_ISL_413458 MT163719
 2020-03-01 2020-03-05
 United States SARS-CoV-2/human/USA/WA7-UW4/2020
 C8782T C17747T A17858G C18060T T20281C T28144C

EPI_ISL_413486 MT163720
 2020-03-01 2020-03-05
 United States SARS-CoV-2/human/USA/WA8-UW5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAAC1- A3406C C5784T C8782T C17747T A17858G C18060T C23525T T28144C

EPI_ISL_413572 LR878224
 2020-03-01 2020-03-07
 Netherlands hCoV-19/Netherlands/Haarlem_1363688/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C1059T T1666C C3037T C14408T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_413582 LR878241
 2020-03-01 2020-03-07
 Netherlands hCoV-19/Netherlands/Rotterdam_1363790/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- ATG1605- C12621T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_413589 LR878358
 2020-03-01 2020-03-07
 Netherlands hCoV-19/Netherlands/Utrecht_1363628/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T G2527T C3037T C6428T G11083T C14408T A23403G A25575C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_413647
 2020-03-01 2020-03-09
 Portugal hCoV-19/Portugal/CV62/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_413648
 2020-03-01 2020-03-09
 Portugal hCoV-19/Portugal/CV63/2020
 C241T C3037T C14408T A23403G C29144T

EPI_ISL_414023
 2020-03-01 2020-03-10
 Switzerland hCoV-19/Switzerland/VD5615/2020
 ATTAAAGGTTT1- C241T C3037T G13503T C14408T A23403G GGG28881AAC A29903-

EPI_ISL_414524
 2020-03-01 2020-03-13
 United Kingdom hCoV-19/England/200991076/2020
 C241T C3037T C14408T C16949Y A23403G A26530G G28739T

EPI_ISL_415154
 2020-03-01 2020-03-16
 Belgium hCoV-19/Belgium/BM-03012/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_415155
 2020-03-01 2020-03-16
 Belgium hCoV-19/Belgium/VAG-03013/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C20148T A23403G A26530G C28826T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_415156
 2020-03-01 2020-03-16
 Belgium hCoV-19/Belgium/SH-03014/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T15504G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_415157
 2020-03-01 2020-03-16
 Belgium hCoV-19/Belgium/BC-03016/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_415158
 2020-03-01 2020-03-16
 Belgium hCoV-19/Belgium/QKJ-03015/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A13947T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_415458
 2020-03-01 2020-03-17
 Switzerland hCoV-19/Switzerland/GE8102/2020
 ATTAAA1- C241T C313T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_415581
 2020-03-01 2020-03-18
 Canada hCoV-19/Canada/BC_02421/2020
 G1397A G11083T C19484T T28688C G29742T

EPI_ISL_415703
 2020-03-01 2020-03-19
 Switzerland hCoV-19/Switzerland/TI2045/2020
 ATTAAAG1- C241T C3037T C12357T C14408T A23403G GGG28881AAC

EPI_ISL_416144
 2020-03-01 2020-03-20
 Denmark hCoV-19/Denmark/SSI-03/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C7392T C14408T A23403G GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_416503
 2020-03-01 2020-03-22
 France hCoV-19/France/B2334/2020
 C3987T G5357T G11083T G20887A G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_417086 MT627244
 2020-03-01 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S33/2020
 C8782T C17747T A17858G C18060T T28144C T28976C

EPI_ISL_417139 MT627246
 2020-03-01 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S86/2020
 C8782T C17747T A17858G C18060T T23010C T28144C

EPI_ISL_417140 MT627225
 2020-03-01 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S87/2020
 C8782T C17747T A17858G C18060T T20281C T28144C

EPI_ISL_417141 MT627287
 2020-03-01 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S88/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417162 MT627298
 2020-03-01 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S109/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417171 MT627254
 2020-03-01 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S118/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417236
 2020-03-01 2020-03-25
 United Kingdom hCoV-19/England/20104015302/2020
 C241T C3037T A11755R C14408T C20031M A23403G C27046T GGG28881RRS

EPI_ISL_417418
 2020-03-01 2020-03-25
 Italy hCoV-19/Italy/FVG/ICGEB_S1/2020
 C241T C3037T C14408T A23403G -29904AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

EPI_ISL_417419
 2020-03-01 2020-03-25
 Italy hCoV-19/Italy/FVG/ICGEB_S5/2020
 AT1- C241T C3037T C14408T A23403G G29009A -29904AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

EPI_ISL_417421
 2020-03-01 2020-03-25
 Italy hCoV-19/Italy/FVG/ICGEB_S8/2020
 C241T C3037T C14408T A23403G A29874G A29876G A29882G A29890G A29896G AA29899GG -29904GAGAAAAAAGAAAGAAAAAGAAGAAAAGAGAAAAGGGAAAAGGAAGAGGAAAAGGAGAAAGAGATCGGAAGACG

EPI_ISL_417423
 2020-03-01 2020-03-25
 Italy hCoV-19/Italy/FVG/ICGEB_S9/2020
 A1GGA C241T C3037T C14408T A23403G AAAAAAAAAAAAA29891-

EPI_ISL_417486
 2020-03-01 2020-03-26
 Norway hCoV-19/Norway/1538/2020
 ATTAAAG1- G4142R C7390T G11083T C11833T C15495M G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_417487
 2020-03-01 2020-03-26
 Norway hCoV-19/Norway/1539/2020
 ATTAAAGGTTT1- C7390T G11083T C11833T T20197Y G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_417688
 2020-03-01 2020-03-27
 Iceland hCoV-19/Iceland/12/2020
 C241T C3037T C14408T A23403G C27046T C28344A GGG28881AAC

EPI_ISL_417736
 2020-03-01 2020-03-27
 Iceland hCoV-19/Iceland/14/2020
 C241T C3037T C14408T A23403G G24077T

EPI_ISL_417921 MT525950
 2020-03-01 2020-03-27
 Italy SARS-CoV-2/human/ITA/INMI3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATC1- C241T C3037T C14408T A23403G TGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29809-

EPI_ISL_418245
 2020-03-01 2020-03-01
 Spain hCoV-19/Spain/CastillaLaMancha201328/2020
 C6449T C8782T C26088T T28144C AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_418246
 2020-03-01 2020-03-01
 Spain hCoV-19/Spain/CastillaLaMancha201329/2020
 C6449T C8782T G13617T C26088T T28144C AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_418248
 2020-03-01 2020-03-01
 Spain hCoV-19/Spain/CastillayLeon201323/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_418987
 2020-03-01 2020-03-31
 Belgium hCoV-19/Belgium/CG-030158/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_418999
 2020-03-01 2020-04-01
 Singapore hCoV-19/Singapore/18/2020
 C3426T C8782T ACTTGAACTGCAAGATCATAATGAAACTTGTCACGCCTAAACGAACATGAAATTTCTTGTTTTCTTAGGAATCATCACAACTGTAGCTGCATTTCACCAAGAATGTAGTTTACAGTCATGTACTCAACATCAACCATATGTAGTTGATGACCCGTGTCCTATTCACTTCTATTCTAAATGGTATATTAGAGTAGGAGCTAGAAAATCAGCACCTTTAATTGAATTGTGCGTGGATGAGGCTGGTTCTAAATCACCCATTCAGTACATCGATATCGGTAATTATACAGTTTCCTGTTTACCTTTTACAATTAATTGCCAGGAACCTAAATTGGGTAGTCTTGTAGTGCGTTGTTCGTTCTATGAAGACTTTTTAGAGTATCAT27848- AAAAAAAAAAAA29892-

EPI_ISL_419210 MT276598
 2020-03-01 2020-04-01
 Israel SARS-CoV-2/human/ISR/ISR_IT0320/2020
 A1GGGGGA C241T C313T C3037T C14408T A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_420789 MT304483
 2020-03-01 2020-04-06
 United States SARS-CoV-2/human/USA/IL_1375/2020
 C17249Y C28057Y AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_420790 MT304482
 2020-03-01 2020-04-06
 United States SARS-CoV-2/human/USA/IL_1293/2020
 AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_420794 MT304487
 2020-03-01 2020-04-06
 United States SARS-CoV-2/human/USA/OR_5430/2020
 G11083T C14805T G26144T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_420795 MT304488
 2020-03-01 2020-04-06
 United States SARS-CoV-2/human/USA/RI_0556/2020
 C241T C3037T C14408T A20268G A23403G C27684T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_420797 MT304490
 2020-03-01 2020-04-06
 United States SARS-CoV-2/human/USA/TX_2817/2020
 C241T G932A C3037T C14408T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_420798 MT304491
 2020-03-01 2020-04-06
 United States SARS-CoV-2/human/USA/TX_2967/2020
 C241T C3037T C5663Y C7860Y T11654Y T12122Y C14408T C18877T A23403G G25563T C28315Y AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_430274 MT632597
 2020-03-01 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S236/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_430285 MT632585
 2020-03-01 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S247/2020
 C8782T C17747T A17858G C18060T C20234T T28144C

EPI_ISL_430287 MT632607
 2020-03-01 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S249/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_430793
 2020-03-01 2020-04-27
 Argentina hCoV-19/Argentina/PAIS_A001/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATC1- C241T C1059Y C3037T G13489R C14408T C17165T A20268R A23403G C23731Y T27299C GGG28881AAC T29148Y TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_431101
 2020-03-01 2020-04-29
 India hCoV-19/India/GMC-RK100/2020
 G9479K C15324T A15477G T21644C C24130T C29303T C29870A

EPI_ISL_437604 MT447174
 2020-03-01 2020-05-01
 Thailand SARS-CoV-2/human/THA/SI206377-NST/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- A895G C2942T G4390T C8782T C9598T G20134T G24047A G27877T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_447330
 2020-03-01 2020-05-17
 Israel hCoV-19/Israel/51137031/2020
 C241T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_451308
 2020-03-01 2020-05-24
 Italy hCoV-19/Italy/LO-13075-B/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_451309
 2020-03-01 2020-05-24
 Italy hCoV-19/Italy/LO-13075-N/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_454733 MT531537
 2020-03-01 2020-05-28
 Italy SARS-CoV-2/human/ITA/Siena-1/2020
 AT1- C241T C3037T C14408T T19839C A23403G GGG28881AAC AAAAAA29898-

EPI_ISL_454918
 2020-03-01 2020-05-29
 China hCoV-19/Wuhan/HB-WH1-142/2020
 

EPI_ISL_454955
 2020-03-01 2020-05-29
 China hCoV-19/Wuhan/HB-WH4-205/2020
 

EPI_ISL_454975
 2020-03-01 2020-05-29
 China hCoV-19/Wuhan/HB-WH5-232/2020
 C1060A A7902G G26144T C29518T

EPI_ISL_455337
 2020-03-01 2020-05-29
 Spain hCoV-19/Spain/LaRioja201334/2020
 C8782T T9477A C14805T T17328G A17337T A17346C T21321C T24765C G25979T T28144C C28657T C28863T TATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29832-

EPI_ISL_460085
 2020-03-01 2020-06-05
 Italy hCoV-19/Italy/CR-13221-1Mar/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_464227
 2020-03-01 2020-06-11
 United Kingdom hCoV-19/England/20099089404/2020
 G1397A G4866A A9514G G11083T A17799R T28688C G29742T

EPI_ISL_464334
 2020-03-01 2020-06-11
 United Kingdom hCoV-19/England/201040152/2020
 C241T C3037T A11755G C14408T A23403G C27046T GGG28881AAC

EPI_ISL_464335
 2020-03-01 2020-06-11
 United Kingdom hCoV-19/England/201040154/2020
 C241T C3037T A11755R C14408T C20031M A23403G C27046T GGG28881RRS

EPI_ISL_467161
 2020-03-01 2020-06-12
 Spain hCoV-19/Spain/COV001608/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T C29870A

EPI_ISL_468764
 2020-03-01 2020-06-17
 Spain hCoV-19/Spain/Logrono_h2285/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T

EPI_ISL_479812
 2020-03-01 2020-07-01
 Japan hCoV-19/Japan/PG-0049/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C11752T C19170A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479823
 2020-03-01 2020-07-01
 Japan hCoV-19/Japan/PG-0063/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C37A C8782T G16381A T17877C T28144C G28878A G29742A TTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29820-

EPI_ISL_479914
 2020-03-01 2020-07-01
 Japan hCoV-19/Japan/PG-0214/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- T4402C G5062T C8782T C23185T T28144C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_479915
 2020-03-01 2020-07-01
 Japan hCoV-19/Japan/PG-0215/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- T4402C G5062T C8782T T28144C CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_479916
 2020-03-01 2020-07-01
 Japan hCoV-19/Japan/PG-0216/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- T4402C G5062T C8782T T28144C TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_480050
 2020-03-01 2020-07-01
 Japan hCoV-19/Japan/PG-0381/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G3179A C6982T C8782T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480051
 2020-03-01 2020-07-01
 Japan hCoV-19/Japan/PG-0382/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- G3179A C6982T C8782T T28144C TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_490012 MT755899
 2020-03-01 2020-07-14
 Saudi Arabia SARS-CoV-2/human/SAU/677/2020
 C241T C2644T C3037T C14408T C18877T A22528G A23403G G23755T G25563T T26038C C26735T

EPI_ISL_497997
 2020-03-01 2020-07-26
 South Korea hCoV-19/Korea/KCDC2096/2020
 ATTAAAGGTTTATACC1- G256T G5572T G11083T C14805T C21575T G26144T C29098T AAAA29900-

EPI_ISL_508934
 2020-03-01 2020-08-04
 France hCoV-19/France/ARA0591/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAA1- C241T C3037T C14408T A23403G A26530G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_509712 MT844024
 2020-03-01 2020-08-05
 Belize SARS-CoV-2/human/BLZ/CDC-6846/2020
 C241T C313T C3037T C14408T A23403G G25456T GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_523503
 2020-03-01 2020-08-26
 Netherlands hCoV-19/Netherlands/un-EMC-747/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_524474
 2020-03-01 2020-08-28
 Switzerland hCoV-19/Switzerland/AG-1000477914/2020
 C241T C3037T C14408T A23403G GGG28881AAC T29148C AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_524475
 2020-03-01 2020-08-28
 Switzerland hCoV-19/Switzerland/ZH-1000477916/2020
 ATTAAAGGTTTATACCTTC1- C241T C3037T C14408T C14571Y T15071W A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524782
 2020-03-01 2020-08-28
 Switzerland hCoV-19/Switzerland/ZH-1000477909/2020
 ATTAAA1- C241T C3037T C14408T C20762Y A23403G GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_530026
 2020-03-01 2020-09-10
 Spain hCoV-19/Spain/MD-LP100-2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_535716
 2020-03-01 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00210314/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C506T G1397A C9967T G11083T G14335T C22414T T28688C C28854T G29742T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_535717
 2020-03-01 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00212401/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535718
 2020-03-01 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00213013/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17747T A17858G C18060T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539550
 2020-03-01 2020-09-18
 Spain hCoV-19/Spain/CT-ISCIII-202045/2020
 G11083T C14805T T17247C G26144T ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_539551
 2020-03-01 2020-09-18
 Spain hCoV-19/Spain/CT-ISCIII-202050/2020
 C241T C3037T T5359G C14408T A20268G C23123A A23403G AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

MT415320
 2020-03-01 2020-04-29
 India SARS-CoV-2/human/IND/OUMRK100/2020
 AT1- G9479K C15324T A15477G T21644C C24130T C29303T C29870A

EPI_ISL_413566 LR878232
 2020-03-02 2020-03-07
 Netherlands hCoV-19/Netherlands/Blaricum_1364780/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T C14408T A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_413573 LR878238
 2020-03-02 2020-03-07
 Netherlands hCoV-19/Netherlands/Hardinxveld_Giessendam_1364806/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- T514C ATG1605- C16762T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_413577 LR878236
 2020-03-02 2020-03-07
 Netherlands hCoV-19/Netherlands/Naarden_1364774/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- T514C ATG1605- GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_413580 LR878243
 2020-03-02 2020-03-07
 Netherlands hCoV-19/Netherlands/Oisterwijk_1364072/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- ATG1605- GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_413583 LR878230
 2020-03-02 2020-03-07
 Netherlands hCoV-19/Netherlands/Rotterdam_1364040/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- T514C ATG1605- GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_413590 LR878242
 2020-03-02 2020-03-07
 Netherlands hCoV-19/Netherlands/Utrecht_1364066/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- ATG1605- GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_413591 LR878235
 2020-03-02 2020-03-07
 Netherlands hCoV-19/Netherlands/Zeewolde_1365080/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T C14408T A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_413592
 2020-03-02 2020-03-07
 Taiwan hCoV-19/Taiwan/NTU03/2020
 C241T C3037T C14408T C15857Y C18877T A23403G G25563T G26211K AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_413597
 2020-03-02 2020-03-08
 Australia hCoV-19/Australia/NSW11/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C884T G1397A G8653T G11083T T28688C CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_414014
 2020-03-02 2020-03-10
 Brazil hCoV-19/Brazil/SPBR-03/2020
 ATTAAAGGTTTATACC1- C241T C3037T C14408T A23403G C27046T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_414423 LR878258 LR878325
 2020-03-02 2020-03-12
 Netherlands hCoV-19/Netherlands/Gelderland_1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_414428 LR878231
 2020-03-02 2020-03-12
 Netherlands hCoV-19/Netherlands/NoordBrabant_1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T T514C C3037T C14408T A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_414429 LR878251
 2020-03-02 2020-03-12
 Netherlands hCoV-19/Netherlands/NoordBrabant_3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T C14408T A23403G C27046T C28344A GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_414439 LR878260
 2020-03-02 2020-03-12
 Netherlands hCoV-19/Netherlands/Utrecht_5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_414520
 2020-03-02 2020-03-13
 Germany hCoV-19/Germany/BavPat2/2020
 ATTAAAGG1- G1397A C8880T G9479T A9514G T9931C G11083T T28688C G29742T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_414521
 2020-03-02 2020-03-13
 Germany hCoV-19/Germany/BavPat3/2020
 ATTAAAG1- C8782T G23900C T28144C C29095T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_414525
 2020-03-02 2020-03-13
 United Kingdom hCoV-19/England/201040081/2020
 C241T T1927W C3037T C14408T A23403G

EPI_ISL_414577
 2020-03-02 2020-03-13
 Chile hCoV-19/Chile/Talca-1/2020
 AT1GG A4G AGGT6CATC C8782T C17470T G18907T C26088T T28144C G28580T TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_414627
 2020-03-02 2020-03-15
 France hCoV-19/France/HF1795/2020
 ATTAAA1- T13A G45C C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_414628
 2020-03-02 2020-03-15
 France hCoV-19/France/HF1805/2020
 C241T C3037T C14408T A23403G A24956G G25563T G29868- A29892C A29894C

EPI_ISL_415584
 2020-03-02 2020-03-18
 Canada hCoV-19/Canada/BC_41851/2020
 C8782T A17858G C18060T T28144C G29736T

EPI_ISL_415650
 2020-03-02 2020-03-18
 France hCoV-19/France/IDF2075/2020
 C241T C1059T C3037T C14408T A23403G G25563T G28857A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_415701
 2020-03-02 2020-03-19
 Switzerland hCoV-19/Switzerland/BS0914/2020
 ATTA1- C241T C3037T C14408T T19839C A23403G GGG28881AAC

EPI_ISL_415702
 2020-03-02 2020-03-19
 Switzerland hCoV-19/Switzerland/SZ1417/2020
 ATTAAAGG1- C241T C3037T G11083T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_416140
 2020-03-02 2020-03-20
 Denmark hCoV-19/Denmark/SSI-05/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_416153
 2020-03-02 2020-03-20
 Denmark hCoV-19/Denmark/SSI-04/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- A30T A187G C241T C3037T T13402G C14408T T20891G A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416412 MT450921
 2020-03-02 2020-03-20
 Australia SARS-CoV-2/human/AUS/VIC04/2020
 ATTAAAGGTT1- C884T G1397A G8653T G11083T C12357T C13506T C26447T T28688C G29742T A29865R

EPI_ISL_416458
 2020-03-02 2020-03-22
 Kuwait hCoV-19/Kuwait/KU12/2020
 ATTAAAGGT1- C884T G1397A A3472G C4999Y G8653T G11083T G27613T T28688C G29742T

EPI_ISL_416467
 2020-03-02 2020-03-22
 Belgium hCoV-19/Belgium/MTR-03021/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_416468
 2020-03-02 2020-03-22
 Belgium hCoV-19/Belgium/GMH-03022/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_416470
 2020-03-02 2020-03-22
 Belgium hCoV-19/Belgium/DB-03023/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3130T C3784T T3793C C14408T A23403G A26530G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_416471
 2020-03-02 2020-03-22
 Belgium hCoV-19/Belgium/DBD-03024/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A13947T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_416472
 2020-03-02 2020-03-22
 Belgium hCoV-19/Belgium/UMF-03025/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A13947T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_416476
 2020-03-02 2020-03-22
 Belgium hCoV-19/Belgium/MTR-03026/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_416505
 2020-03-02 2020-03-22
 France hCoV-19/France/B2336/2020
 C241T C1059T C3037T C14408T A23403G G25563T ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_416519
 2020-03-02 2020-03-22
 New Zealand hCoV-19/NewZealand/20VR0189/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_416541
 2020-03-02 2020-03-23
 Kuwait hCoV-19/Kuwait/KU09/2020
 A1- C884T G1397A A2239C G8653T G11083T A20059T A25980C T28688C G29742T

EPI_ISL_416542
 2020-03-02 2020-03-23
 Kuwait hCoV-19/Kuwait/KU17/2020
 ATTAAAGGTT1- G1397A G11083T G14653A T28688C G29742T

EPI_ISL_416543
 2020-03-02 2020-03-23
 Kuwait hCoV-19/Kuwait/KU18/2020
 ATTAAAG1- C884T G1397A C2143A T2241Y C7008M G8653T G11083T C13860T C26882Y T28688C G29742T

EPI_ISL_417068 MT627273
 2020-03-02 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S15/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417072 MT627281
 2020-03-02 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S19/2020
 C8782T C17747T A17858G C18060T T23010C T28144C

EPI_ISL_417073 MT627316
 2020-03-02 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S20/2020
 C8782T C17747T A17858G C18060T T23010C T28144C

EPI_ISL_417074 MT627296
 2020-03-02 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S21/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417075 MT627228
 2020-03-02 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S22/2020
 G2422A C8782T C17747T A17858G C18060T T23010C T28144C

EPI_ISL_417076 MT627231
 2020-03-02 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S23/2020
 G2422A C8782T C17747T A17858G C18060T T23010C T28144C

EPI_ISL_417077 MT627272
 2020-03-02 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S24/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417079 MT627262
 2020-03-02 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S26/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417081 MT627266
 2020-03-02 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S28/2020
 C8782T C17747T A17858G C18060T G22988A T28144C

EPI_ISL_417082 MT627280
 2020-03-02 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S29/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417085 MT627241
 2020-03-02 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S32/2020
 C8782T C17747T A17858G C18060T G22988A T28144C

EPI_ISL_417087 MT627309
 2020-03-02 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S34/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417088 MT627217
 2020-03-02 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S35/2020
 T5941G C11095T C17747T A17858G C18060T G26596T T28144C

EPI_ISL_417089 MT627317
 2020-03-02 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S36/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417112 MT627305
 2020-03-02 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S59/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417144 MT627283
 2020-03-02 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S91/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417169 MT627271
 2020-03-02 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S116/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417170 MT627251
 2020-03-02 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S117/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417175 MT627249
 2020-03-02 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S122/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417226
 2020-03-02 2020-03-25
 United Kingdom hCoV-19/England/20104004902/2020
 C241T C3037T C14408T A23403G C25350T

EPI_ISL_417233
 2020-03-02 2020-03-25
 United Kingdom hCoV-19/England/20104009002/2020
 C241T C3037T C14408T A23403G G24077T

EPI_ISL_417234
 2020-03-02 2020-03-25
 United Kingdom hCoV-19/England/20104009102/2020
 C241T C3037T C14408T C20031A A23403G C27046T GGG28881AAC

EPI_ISL_417235
 2020-03-02 2020-03-25
 United Kingdom hCoV-19/England/20104013703/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_417427
 2020-03-02 2020-03-25
 Belgium hCoV-19/Belgium/VI-03027/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C11412T C14408T A23403G C27046T GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_417428
 2020-03-02 2020-03-25
 Belgium hCoV-19/Belgium/FR-03029/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C5730T C14408T A23403G GGG28881AAC TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_417693
 2020-03-02 2020-03-27
 Iceland hCoV-19/Iceland/25/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_417734
 2020-03-02 2020-03-27
 Iceland hCoV-19/Iceland/22/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_417800
 2020-03-02 2020-03-27
 Iceland hCoV-19/Iceland/15/2020
 C241T C3037T C14408T C23086T A23403G C27046T GGG28881AAC C29095T

EPI_ISL_417817
 2020-03-02 2020-03-27
 Iceland hCoV-19/Iceland/19/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_417840
 2020-03-02 2020-03-27
 Iceland hCoV-19/Iceland/23/2020
 C241T C3037T C14408T A23403G C27046T C28344A GGG28881AAC

EPI_ISL_417981
 2020-03-02 2020-03-27
 Spain hCoV-19/Spain/Madrid_R10_33/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C8782T T9477A C14805T T28144C C28863T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_418207
 2020-03-02 2020-03-29
 Senegal hCoV-19/Senegal/016/2020
 C241T C1059T C3037T T13006C C14408T A23403G G25563T C25688T

EPI_ISL_418241
 2020-03-02 2020-03-29
 Algeria hCoV-19/Algeria/G0638_2264/2020
 C241T C1059T C3037T C10582T C14408T C18115T A23403G G25563T C25777T C26461T C29353T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_418244
 2020-03-02 2020-03-02
 Spain hCoV-19/Spain/Andalucia201373/2020
 ATG1605- C8782T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_418253
 2020-03-02 2020-03-02
 Spain hCoV-19/Spain/PaisVasco201382/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_418986
 2020-03-02 2020-03-31
 Belgium hCoV-19/Belgium/RS-030257/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T T13402G T13408C C14408T A20268G A23403G ACAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_419001
 2020-03-02 2020-04-01
 Singapore hCoV-19/Singapore/19/2020
 C8782T ACTTGAACTGCAAGATCATAATGAAACTTGTCACGCCTAAACGAACATGAAATTTCTTGTTTTCTTAGGAATCATCACAACTGTAGCTGCATTTCACCAAGAATGTAGTTTACAGTCATGTACTCAACATCAACCATATGTAGTTGATGACCCGTGTCCTATTCACTTCTATTCTAAATGGTATATTAGAGTAGGAGCTAGAAAATCAGCACCTTTAATTGAATTGTGCGTGGATGAGGCTGGTTCTAAATCACCCATTCAGTACATCGATATCGGTAATTATACAGTTTCCTGTTTACCTTTTACAATTAATTGCCAGGAACCTAAATTGGGTAGTCTTGTAGTGCGTTGTTCGTTCTATGAAGACTTTTTAGAGTATCAT27848- AAAAAAAAAAAA29892-

EPI_ISL_419679
 2020-03-02 2020-04-03
 Spain hCoV-19/Spain/Valencia15/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T9477A C14805T C21691T G25979T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420037
 2020-03-02 2020-04-04
 Algeria hCoV-19/Algeria/G0860_2262/2020
 C241T C1059T C3037T C5730T C10582T C14408T A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_420099
 2020-03-02 2020-04-05
 Singapore hCoV-19/Singapore/22/2020
 C8782T ACTTGAACTGCAAGATCATAATGAAACTTGTCACGCCTAAACGAACATGAAATTTCTTGTTTTCTTAGGAATCATCACAACTGTAGCTGCATTTCACCAAGAATGTAGTTTACAGTCATGTACTCAACATCAACCATATGTAGTTGATGACCCGTGTCCTATTCACTTCTATTCTAAATGGTATATTAGAGTAGGAGCTAGAAAATCAGCACCTTTAATTGAATTGTGCGTGGATGAGGCTGGTTCTAAATCACCCATTCAGTACATCGATATCGGTAATTATACAGTTTCCTGTTTACCTTTTACAATTAATTGCCAGGAACCTAAATTGGGTAGTCTTGTAGTGCGTTGTTCGTTCTATGAAGACTTTTTAGAGTATCAT27848- TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_420100
 2020-03-02 2020-04-05
 Singapore hCoV-19/Singapore/23/2020
 ATTA1- C8782T ACTTGAACTGCAAGATCATAATGAAACTTGTCACGCCTAAACGAACATGAAATTTCTTGTTTTCTTAGGAATCATCACAACTGTAGCTGCATTTCACCAAGAATGTAGTTTACAGTCATGTACTCAACATCAACCATATGTAGTTGATGACCCGTGTCCTATTCACTTCTATTCTAAATGGTATATTAGAGTAGGAGCTAGAAAATCAGCACCTTTAATTGAATTGTGCGTGGATGAGGCTGGTTCTAAATCACCCATTCAGTACATCGATATCGGTAATTATACAGTTTCCTGTTTACCTTTTACAATTAATTGCCAGGAACCTAAATTGGGTAGTCTTGTAGTGCGTTGTTCGTTCTATGAAGACTTTTTAGAGTATCAT27848- TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_420784 MT304477
 2020-03-02 2020-04-06
 United States SARS-CoV-2/human/USA/AZ_4811/2020
 C241T C3037T C14408T C16762Y T19839C A23403G G26918K GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_420785 MT304478
 2020-03-02 2020-04-06
 United States SARS-CoV-2/human/USA/FL_6318/2020
 C241T C313Y C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_420792 MT304485
 2020-03-02 2020-04-06
 United States SARS-CoV-2/human/USA/NH_0008/2020
 C241T C1059T C3037T T13006C C14408T A23403G G25563T C25688T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_420793 MT304486
 2020-03-02 2020-04-06
 United States SARS-CoV-2/human/USA/NY_2929/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_422865 LR878121
 2020-03-02 2020-04-11
 Netherlands hCoV-19/Netherlands/NoordBrabant_69/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C9223T G11083T C14805T T17247C G26144T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_424855
 2020-03-02 2020-04-13
 United States hCoV-19/USA/FL_7169/2020
 C241T C3037T C8389T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426179
 2020-03-02 2020-04-15
 India hCoV-19/India/c31/2020
 ATTAAAGGTTTAT1- C241T C313T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_429335
 2020-03-02 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI103/2020
 C884T G1397A A6646G G8653T G11083T G11534A G14371T C18570T T28688C G29742T

EPI_ISL_430202 MT632549
 2020-03-02 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S164/2020
 C8782T G15664A C17747T A17858G C18060T T28144C

EPI_ISL_430276 MT632548
 2020-03-02 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S238/2020
 C8782T T15927G C17747T A17858G C18060T C26936T T28144C

EPI_ISL_430290 MT632518
 2020-03-02 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S252/2020
 C8782T T17475C C17747T A17858G C18060T T28144C G29783T

EPI_ISL_430294 MT632581
 2020-03-02 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S256/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_436050 MT434813
 2020-03-02 2020-05-05
 United States SARS-CoV-2/human/USA/NY-CDC-SURV0144NYC/2020
 A11217G C17440T G29711T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_437663
 2020-03-02 2020-05-11
 Denmark hCoV-19/Denmark/ALAB-SSI-248/2020
 C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC

EPI_ISL_437996
 2020-03-02 2020-05-12
 Austria hCoV-19/Austria/CeMM0148/2020
 C241T C3037T G12832A C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_452218
 2020-03-02 2020-05-27
 Germany hCoV-19/Germany/FrankfurtFFM1/2020
 G3518T G12704T G12797A A17423G T27272C C28854T

EPI_ISL_452219
 2020-03-02 2020-05-27
 Germany hCoV-19/Germany/FrankfurtFFM3/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_452220
 2020-03-02 2020-05-27
 Germany hCoV-19/Germany/FrankfurtFFM4/2020
 C241T C3037T A6228G C14408T C16289Y A23403G GGG28881AAC C28961T C29870M

EPI_ISL_452221
 2020-03-02 2020-05-27
 Germany hCoV-19/Germany/FrankfurtFFM5/2020
 G1440A G2891A A23235G

EPI_ISL_452222
 2020-03-02 2020-05-27
 Germany hCoV-19/Germany/FrankfurtFFM6/2020
 C241T C3037T A6228G C14408T A23403G GGG28881AAC C29870M

EPI_ISL_452223
 2020-03-02 2020-05-27
 Germany hCoV-19/Germany/FrankfurtFFM7/2020
 C241T C3037T C14408T C15324T C23179Y A23403G

EPI_ISL_454868
 2020-03-02 2020-05-29
 Sweden hCoV-19/Sweden/20-50052/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_454869
 2020-03-02 2020-05-29
 Sweden hCoV-19/Sweden/20-50053/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_454904
 2020-03-02 2020-05-29
 China hCoV-19/Wuhan/HB-WH1-122/2020
 

EPI_ISL_454905
 2020-03-02 2020-05-29
 China hCoV-19/Wuhan/HB-WH1-124/2020
 T28144C

EPI_ISL_454906
 2020-03-02 2020-05-29
 China hCoV-19/Wuhan/HB-WH1-125/2020
 C8529T C17690T

EPI_ISL_454907
 2020-03-02 2020-05-29
 China hCoV-19/Wuhan/HB-WH1-126/2020
 A4884G T28144C C29095T

EPI_ISL_454908
 2020-03-02 2020-05-29
 China hCoV-19/Wuhan/HB-WH1-127/2020
 T25043C

EPI_ISL_454909
 2020-03-02 2020-05-29
 China hCoV-19/Wuhan/HB-WH1-130/2020
 C26447G

EPI_ISL_454910
 2020-03-02 2020-05-29
 China hCoV-19/Wuhan/HB-WH1-131/2020
 A9243G G11083T

EPI_ISL_454938
 2020-03-02 2020-05-29
 China hCoV-19/Wuhan/HB-WH3-172/2020
 AAGATTTTC729- G10412T T25382C

EPI_ISL_454942
 2020-03-02 2020-05-29
 China hCoV-19/Wuhan/HB-WH3-181/2020
 G3013T

EPI_ISL_454943
 2020-03-02 2020-05-29
 China hCoV-19/Wuhan/HB-WH3-182/2020
 A9243G C9598T C11074T C14183T C16376T

EPI_ISL_454968
 2020-03-02 2020-05-29
 China hCoV-19/Wuhan/HB-WH5-223/2020
 G26144T

EPI_ISL_454985
 2020-03-02 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM-098/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- G26144T

EPI_ISL_454986
 2020-03-02 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM-099/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- G1397A G3328T T7237C A9243G C10789T G11083T A14651C

EPI_ISL_454987
 2020-03-02 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM-100/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- G1397A G29742T

EPI_ISL_454988
 2020-03-02 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM-102/2020
 G1397A A9243G C10789T G11083T G29742T

EPI_ISL_454989
 2020-03-02 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM-104/2020
 C8782T T18603C C23220T C27925T T28144C C29095T

EPI_ISL_454990
 2020-03-02 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM-107/2020
 G1397A G11083T G29742T A29776T

EPI_ISL_454991
 2020-03-02 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM-108/2020
 C203T G1397A C3096T A9243G C10789T C11074T G11083T C12459T C25046T G29742T

EPI_ISL_454994
 2020-03-02 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM-114/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- C11897T T13243C T14684C

EPI_ISL_454997
 2020-03-02 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM-117/2020
 G1264T G1397A G3328T T7237C A9243G C10789T C11074T G11083T A14651C G29742T

EPI_ISL_455001
 2020-03-02 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM2-266/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- C11897T T13243C C13799T T14684C

EPI_ISL_455005
 2020-03-02 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM2-270/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- T13243C T14684C

EPI_ISL_455014
 2020-03-02 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM2-283/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- C8782T T13243C A19887G C29095T G29742T

EPI_ISL_455327
 2020-03-02 2020-05-29
 Spain hCoV-19/Spain/CastillaLaMancha201306/2020
 C241T C3037T C14408T A23403G C29144T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_455363
 2020-03-02 2020-05-29
 China hCoV-19/Wuhan/HB-WH1-123/2020
 TG14865- C23286- T25382C C26447G C28422A

EPI_ISL_455364
 2020-03-02 2020-05-29
 China hCoV-19/Wuhan/HB-WH1-129/2020
 C19154T C26447G T28144C T28250G A28254- C29095T G29179T

EPI_ISL_455369
 2020-03-02 2020-05-29
 China hCoV-19/Wuhan/HB-WH2-145/2020
 T383C C8529T TG14865- T25382C

EPI_ISL_455371
 2020-03-02 2020-05-29
 China hCoV-19/Wuhan/HB-WH2-147/2020
 T20965- C25041A

EPI_ISL_455399
 2020-03-02 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM-101/2020
 C3168A C6990T CC18109-T G21724T

EPI_ISL_455400
 2020-03-02 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM-103/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- G11083T C11173T C13019T T13243C C17130T CC18109-T G21004A

EPI_ISL_455401
 2020-03-02 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM-105/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- CC18109-T T22549C

EPI_ISL_455402
 2020-03-02 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM-106/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- T13243C TG14865- CC18109-T

EPI_ISL_455403
 2020-03-02 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM-110/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- C8481T T14749C CC18109-T

EPI_ISL_455404
 2020-03-02 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM-111/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- G12761A T13243C A15201T CC18109-T C21587T G26144T C26222T C26344T

EPI_ISL_455405
 2020-03-02 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM-112/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- T4873C AAG12147- CC18109-T G21004A

EPI_ISL_455406
 2020-03-02 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM-118/2020
 C8782T G11230T C14408A A15668G T18603C A19887G A26161- C27925T T28144C C29095T

EPI_ISL_455407
 2020-03-02 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM-119/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- T13243C C15857T CC18109-T C21711T

EPI_ISL_455408
 2020-03-02 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM-121/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- CC18109-T C21707T

EPI_ISL_455411
 2020-03-02 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM2-277/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- G914- T13243C T14684C CC18109-T A26098T C26139T C26198T G26475T

EPI_ISL_455848
 2020-03-02 2020-06-01
 Sweden hCoV-19/Sweden/20-50056/2020
 C241T C3037T C9857T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_457706
 2020-03-02 2020-06-02
 Oman hCoV-19/Oman/RESP-20-1189/2020
 C884T T1209C G1397A G8653T C17069T G27561T T28688C C29250T G29742T

EPI_ISL_459909
 2020-03-02 2020-06-05
 China hCoV-19/Harbin/HRB-26/2020
 C9491T C25603T AAAAAAAAAAAA29892-

EPI_ISL_461113
 2020-03-02 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_678/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8139T C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_464275
 2020-03-02 2020-06-11
 United Kingdom hCoV-19/England/20102003804/2020
 A2480G C2558T G11083T C14805T T21072C A23570R G26144T

EPI_ISL_464347
 2020-03-02 2020-06-11
 United Kingdom hCoV-19/England/201041387/2020
 C241T C3037T C5817T C14408T A23403G GGG28881AAC

EPI_ISL_468763
 2020-03-02 2020-06-17
 Spain hCoV-19/Spain/Logrono_h2286/2020
 A6616R C8782T T9477A C14805T G25979T T28144C C28657T C28863T

EPI_ISL_475551
 2020-03-02 2020-06-23
 Sweden hCoV-19/Sweden/20-08067/2020
 G1397A C17550T A18425C T28688C G29742T

EPI_ISL_479821
 2020-03-02 2020-07-01
 Japan hCoV-19/Japan/PG-0058/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C8782T G16381A T17877C T28144C G28878A G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479831
 2020-03-02 2020-07-01
 Japan hCoV-19/Japan/PG-0080/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C11752T C19170A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479832
 2020-03-02 2020-07-01
 Japan hCoV-19/Japan/PG-0081/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C11752T C19170A TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_479833
 2020-03-02 2020-07-01
 Japan hCoV-19/Japan/PG-0082/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C8782T G16381A T17877C T28144C G28878A G29742A AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_479979
 2020-03-02 2020-07-01
 Japan hCoV-19/Japan/PG-0303/2020
 ATTAAAGGTTTA1- G3179A C6982T C8782T C25904T T28144C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_479980
 2020-03-02 2020-07-01
 Japan hCoV-19/Japan/PG-0304/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- G3179A C6982T C8782T C25904T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488371
 2020-03-02 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F583/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488788
 2020-03-02 2020-07-14
 United Kingdom hCoV-19/England/NORT-281050/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C25350T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488800
 2020-03-02 2020-07-14
 United Kingdom hCoV-19/England/NORT-281041/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4890Y C14408T A23403G C25350T G29777R CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_500085
 2020-03-02 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A4D52/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC C29421T

EPI_ISL_500105
 2020-03-02 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A50C1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1514T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_508935
 2020-03-02 2020-08-04
 France hCoV-19/France/ARA0592/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCT1- C241T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_524476
 2020-03-02 2020-08-28
 Switzerland hCoV-19/Switzerland/AG-1000478260/2020
 C241T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_524478
 2020-03-02 2020-08-28
 Switzerland hCoV-19/Switzerland/ZH-1000478320/2020
 C241T C3037T C3373A C14408T A23403G GGG28881AAC G29422T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_529065
 2020-03-02 2020-09-10
 Peru hCoV-19/Peru/LIM-UPCH-0003/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C4002T T4092G A7479G G10097A C13297T C13536T C14408T A23403G C23731T G27478T GGG28881AAC G29179T TGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29689-

EPI_ISL_530027
 2020-03-02 2020-09-10
 Spain hCoV-19/Spain/MD-LP101/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C527T C1722T A1866G C3037T G13240A C14408T G18271A A20268G A23403G ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_539556
 2020-03-02 2020-09-18
 Spain hCoV-19/Spain/CT-ISCIII-34696/2020
 C241T C3037T C14408T A23403G GGG28881AAC GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

GWHAORO01000001
 2020-03-02 2020-09-11
 China SARS-CoV-2/human/CHN/Beijing-CP2/2020
 C241T C3037T C14408T T14950C A23403G

MT292574
 2020-03-02 2020-04-05
 Spain SARS-CoV-2/human/ESP/Valencia15/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T9477A C14805T C21691T G25979T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT325565
 2020-03-02 2020-04-10
 United States SARS-CoV-2/human/USA/FL_7169/2020
 C241T C3037T C8389T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_413489
 2020-03-03 2020-03-05
 Italy hCoV-19/Italy/UniSR1/2020
 ATTAAA1- A187G C241T C3037T A6956C C14408T A23403G AAAAAAAAAA29894-

EPI_ISL_413563
 2020-03-03 2020-03-07
 United States hCoV-19/USA/WA12-UW8/2020
 ATTAAA1- C8782T C9430A C17747T A17858G C18060T T28144C

EPI_ISL_413579 LR878240
 2020-03-03 2020-03-07
 Netherlands hCoV-19/Netherlands/Nootdorp_1364222/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T C14408T A23403G GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_413584 LR878237
 2020-03-03 2020-03-07
 Netherlands hCoV-19/Netherlands/Rotterdam_1364740/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_413587 LR878233
 2020-03-03 2020-03-07
 Netherlands hCoV-19/Netherlands/Tilburg_1364286/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T C14408T A23403G GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_413600
 2020-03-03 2020-03-09
 Australia hCoV-19/Australia/NSW14/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- G1397A G4255A G11083T A20047G T28688C CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_413602
 2020-03-03 2020-03-09
 Finland hCoV-19/Finland/FIN03032020A/2020
 C241T C3037T C14408T G22865T A23403G C29585T TGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29809-

EPI_ISL_413603
 2020-03-03 2020-03-09
 Finland hCoV-19/Finland/FIN03032020B/2020
 ATT1- G11083T C14805T G26144T G29405C ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_413604
 2020-03-03 2020-03-09
 Finland hCoV-19/Finland/FIN03032020C/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC TGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29807C

EPI_ISL_414433 LR878257
 2020-03-03 2020-03-12
 Netherlands hCoV-19/Netherlands/NoordHolland_1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_414435 LR878245
 2020-03-03 2020-03-12
 Netherlands hCoV-19/Netherlands/Utrecht_1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T C14408T C15407T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_414443 LR878259
 2020-03-03 2020-03-12
 Netherlands hCoV-19/Netherlands/Utrecht_11/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T C14408T A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_414445 LR878253
 2020-03-03 2020-03-12
 Netherlands hCoV-19/Netherlands/ZuidHolland_9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T G4255T C5284T C14408T T16456G C20051T A23403G C24117T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_414446 LR878249
 2020-03-03 2020-03-12
 Netherlands hCoV-19/Netherlands/ZuidHolland_10/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_414526
 2020-03-03 2020-03-13
 United Kingdom hCoV-19/England/201040141/2020
 C241T C3037T C14408T A23403G C25350T

EPI_ISL_414545 LR878310
 2020-03-03 2020-03-13
 Netherlands hCoV-19/Netherlands/NoordBrabant_36/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3145T C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_414549 LR878305
 2020-03-03 2020-03-13
 Netherlands hCoV-19/Netherlands/NoordHolland_2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3145T C14408T T19839C A23403G GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_414562 LR878311
 2020-03-03 2020-03-13
 Netherlands hCoV-19/Netherlands/ZuidHolland_20/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2507T C3037T G3145T C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_414563 LR878312
 2020-03-03 2020-03-13
 Netherlands hCoV-19/Netherlands/ZuidHolland_21/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- G3145T C12621T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_414579
 2020-03-03 2020-03-13
 Chile hCoV-19/Chile/Santiago-1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C1884Y C8782T T9477A C14805T G25979T T28144C C28657T C28863T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_414586
 2020-03-03 2020-03-13
 Ireland hCoV-19/Ireland/Limerick-19934/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C29769T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_414587
 2020-03-03 2020-03-13
 Ireland hCoV-19/Ireland/Limerick-19935/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_414629
 2020-03-03 2020-03-15
 France hCoV-19/France/HF1870/2020
 C241T C3037T C14408T C15324T C16428T A23403G T29867-

EPI_ISL_414630
 2020-03-03 2020-03-15
 France hCoV-19/France/HF1871/2020
 C241T C1059T C2003T C3037T C10582T C14408T A23403G G25563T C27059T

EPI_ISL_415153
 2020-03-03 2020-03-16
 Belgium hCoV-19/Belgium/VLM-03011/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C20148T A23403G A26530G C28826T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_415646
 2020-03-03 2020-03-18
 Italy hCoV-19/Denmark/SSI-101/2020
 -TA2AGAGAACAGATCTACAAGAGACG G7A TA11GGTTGGTTTGT TCCC18GGGA C241T C3037T C14408T A23403G C23575T G23587C AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_415648
 2020-03-03 2020-03-18
 Italy hCoV-19/Denmark/SSI-104/2020
 ATTAAAGGTTTATACCTTCC1- C241T C1059T C1302T C3037T C14408T C18656T A23403G G25563T T29858G G29861A G29864A ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_416028
 2020-03-03 2020-03-20
 Brazil hCoV-19/Brazil/SPBR-07/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416033
 2020-03-03 2020-03-20
 Brazil hCoV-19/Brazil/SPBR-11/2020
 G1440A G2891A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416141
 2020-03-03 2020-03-20
 Denmark hCoV-19/Denmark/SSI-09/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T C14408T A23403G TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_416466 MT598642
 2020-03-03 2020-03-22
 United States SARS-CoV-2/human/USA/WA-S11/2020
 C8782T T15927G C17747T A17858G C18060T C26936T T28144C

EPI_ISL_416469
 2020-03-03 2020-03-22
 Belgium hCoV-19/Belgium/SN-03031/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3130T T3793C C14408T A23403G A26530G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_416475
 2020-03-03 2020-03-22
 Belgium hCoV-19/Belgium/DBA-03032/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_416488
 2020-03-03 2020-03-22
 Poland hCoV-19/Poland/PL_P1/2020
 G198A G1440A G2891A

EPI_ISL_416506
 2020-03-03 2020-03-22
 France hCoV-19/France/B2337/2020
 C241T C1059T C3037T C14408T A23403G G25563T GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_416730
 2020-03-03 2020-03-23
 United Kingdom hCoV-19/England/SHEF-BFCB1/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_416731
 2020-03-03 2020-03-23
 United Kingdom hCoV-19/England/SHEF-BFCC0/2020
 C241T C3037T C14408T G20434T A23403G C25350T C26858T

EPI_ISL_416732
 2020-03-03 2020-03-23
 United Kingdom hCoV-19/England/SHEF-BFCDF/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_416740
 2020-03-03 2020-03-23
 United Kingdom hCoV-19/England/SHEF-BFD54/2020
 T514C

EPI_ISL_416746
 2020-03-03 2020-03-23
 France hCoV-19/France/Valence_425/2020
 C241T C3037T C14408T G18266T G22199T A23403G C27046T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_417065 MT627303
 2020-03-03 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S12/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417066 MT627285
 2020-03-03 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S13/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417069 MT627265
 2020-03-03 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S16/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417070 MT627292
 2020-03-03 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S17/2020
 C8782T C17747T A17858G C18060T C23202T T28144C

EPI_ISL_417071 MT627237
 2020-03-03 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S18/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417104 MT627311
 2020-03-03 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S51/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417105 MT627255
 2020-03-03 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S52/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417106 MT627308
 2020-03-03 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S53/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417110 MT627284
 2020-03-03 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S57/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417115 MT627221
 2020-03-03 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S62/2020
 C8782T C9430A C17747T A17858G C18060T T28144C

EPI_ISL_417117 MT627223
 2020-03-03 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S64/2020
 C8782T T16701C C17747T A17858G C18060T T28144C

EPI_ISL_417118 MT627297
 2020-03-03 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S65/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417227
 2020-03-03 2020-03-25
 United Kingdom hCoV-19/England/20104007503/2020
 C241T C3037T C14408T A23403G

EPI_ISL_417231
 2020-03-03 2020-03-25
 United Kingdom hCoV-19/England/20104008802/2020
 C241T C3037T C7528T C14408T C17762T A23403G C25350T

EPI_ISL_417240
 2020-03-03 2020-03-25
 United Kingdom hCoV-19/England/20106004803/2020
 C241T C3037T C14408T G20434T A23403G C25350T C26858T

EPI_ISL_417244
 2020-03-03 2020-03-25
 United Kingdom hCoV-19/England/20106005403/2020
 C241T C3037T C14408T A23403G GGG28881AAC G29256T

EPI_ISL_417246
 2020-03-03 2020-03-25
 United Kingdom hCoV-19/England/20106145903/2020
 C2091T G11083T C14805T T17247C G26144T

EPI_ISL_417248
 2020-03-03 2020-03-25
 United Kingdom hCoV-19/England/20108003302/2020
 T2C C241T C3037T C14408T A23403G G24077T

EPI_ISL_417256
 2020-03-03 2020-03-25
 United Kingdom hCoV-19/England/20108007302/2020
 C241T C3037T C14408T C20031A A23403G C27046T GGG28881AAC

EPI_ISL_417383
 2020-03-03 2020-03-25
 Australia hCoV-19/Australia/NSW15/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1397A C2113T G11083T C18928T T28688C G29374A G29742T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417429
 2020-03-03 2020-03-25
 Belgium hCoV-19/Belgium/MMJ-03034/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T A23403G C27046T GGG28881AAC TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_417430
 2020-03-03 2020-03-25
 Belgium hCoV-19/Belgium/RT-03035/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C575T C3037T C14408T A23403G TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_417491
 2020-03-03 2020-03-26
 Italy hCoV-19/Italy/UnivPM1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T C3037T C14408T A23403G A26530G GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_417773
 2020-03-03 2020-03-27
 Iceland hCoV-19/Iceland/30/2020
 C241T C1059T C3037T C14408T A23403G G25563T G29195T

EPI_ISL_417842
 2020-03-03 2020-03-27
 Iceland hCoV-19/Iceland/31/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_417979
 2020-03-03 2020-03-27
 Spain hCoV-19/Spain/Madrid_R2_15/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C8782T A9204G A11636T A21352G T25356C T28144C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_417980
 2020-03-03 2020-03-27
 Spain hCoV-19/Spain/Madrid_R5_8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C8782T T12364A A19719T C26088T T28144C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_417986
 2020-03-03 2020-03-28
 Portugal hCoV-19/Portugal/PT0001b/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G C27046T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_417987
 2020-03-03 2020-03-28
 Portugal hCoV-19/Portugal/PT0003/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G C29144T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_418010
 2020-03-03 2020-03-28
 Portugal hCoV-19/Portugal/PT0025/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G C29144T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_418209
 2020-03-03 2020-03-29
 Senegal hCoV-19/Senegal/026/2020
 T3C C241T C1059T C3037T T13006C C14408T A23403G G25563T C25688T T28297C

EPI_ISL_418249
 2020-03-03 2020-03-03
 Spain hCoV-19/Spain/CastillayLeon201372/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_418824
 2020-03-03 2020-03-31
 Canada hCoV-19/Canada/BC_4078583/2020
 G1397A G11083T T28688C G29742T

EPI_ISL_419234
 2020-03-03 2020-04-01
 Spain hCoV-19/Spain/LaRioja201575/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T TATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29832-

EPI_ISL_419240
 2020-03-03 2020-04-01
 Spain hCoV-19/Spain/PaisVasco201607/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T CTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29788-

EPI_ISL_420543 MT577009
 2020-03-03 2020-04-06
 India SARS-CoV-2/human/IND/763/2020
 AT1- C241T C3037T C4809T C8782T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_420545 MT577010
 2020-03-03 2020-04-06
 India SARS-CoV-2/human/IND/770/2020
 ATTAAAGGT1- C241T C3037T C4809T C8782T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_420547 MT577011
 2020-03-03 2020-04-06
 India SARS-CoV-2/human/IND/772/2020
 ATTA1- C241T C3037T C4809T C14408T A23403G TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_420549 MT577012
 2020-03-03 2020-04-06
 India SARS-CoV-2/human/IND/773/2020
 ATTAAAGGTTTAT1- C241T C3037T C4809T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_420551 MT577013
 2020-03-03 2020-04-06
 India SARS-CoV-2/human/IND/777/2020
 ATTAAAGGTTTATAC1- C241T C3037T C4809T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_420553 MT577014
 2020-03-03 2020-04-06
 India SARS-CoV-2/human/IND/781/2020
 A1- A4T C241T C3037T C4809T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_420555
 2020-03-03 2020-04-06
 India hCoV-19/India/c32/2020
 ATTAAAGGTTTAT1- C241T C313T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_420786 MT304480
 2020-03-03 2020-04-06
 United States SARS-CoV-2/human/USA/GA_1320/2020
 T490A C3177T C8782T T18736C C24034T T26729C G28077C T28144C A29700G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_420787 MT304479
 2020-03-03 2020-04-06
 United States SARS-CoV-2/human/USA/GA_1299/2020
 C241T C3037T C14408T A23403G T25554G GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_422825 LR878152
 2020-03-03 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_64/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422898 LR877782
 2020-03-03 2020-04-11
 Netherlands hCoV-19/Netherlands/Utrecht_21/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_425224
 2020-03-03 2020-04-14
 United States hCoV-19/USA/NY-Wadsworth-10495-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_425795
 2020-03-03 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR64/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C20031A A23403G C27046T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_425807
 2020-03-03 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR77/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12455Y C14408T A23403G C25350T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_426025
 2020-03-03 2020-04-14
 United States hCoV-19/USA/NY-Wadsworth-10496-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C12396T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426026
 2020-03-03 2020-04-14
 United States hCoV-19/USA/NY-Wadsworth-10528-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T G28808T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_428683
 2020-03-03 2020-04-21
 Spain hCoV-19/Spain/Madrid_H12_13/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C3037T C8782T A20268G A23403G C26088T T28144C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_429447
 2020-03-03 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI29/2020
 C241T C3037T C14408T G20060T A23403G GGG28881AAC

EPI_ISL_430118 MT627609
 2020-03-03 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S264/2020
 T6178C C8782T C17747T A17858G C18060T G25993A A27525G T28144C

EPI_ISL_430271 MT632558
 2020-03-03 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S233/2020
 C8782T C17747T A17858G C18060T C20234T T28144C

EPI_ISL_430288 MT632606
 2020-03-03 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S250/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_430837
 2020-03-03 2020-04-28
 Thailand hCoV-19/Thailand/TNIC-1889/2020
 ATTAAAGGTTTATACC1- C241T C3037T C14408T G18938A A23403G GGG28881AAC GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_434697
 2020-03-03 2020-05-01
 Thailand hCoV-19/Thailand/NIH-1889/2020
 ATTAAAGGTTTATACC1- C241T C3037T C14408T G18938A A23403G GGG28881AAC GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_437997
 2020-03-03 2020-05-12
 Austria hCoV-19/Austria/CeMM0149/2020
 C241T C3037T G12832A C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_437998
 2020-03-03 2020-05-12
 Austria hCoV-19/Austria/CeMM0150/2020
 C241T C3037T G12832A C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_437999
 2020-03-03 2020-05-12
 Austria hCoV-19/Austria/CeMM0153/2020
 C241T C3037T C14408T T22521K A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_438001
 2020-03-03 2020-05-12
 Italy hCoV-19/Austria/CeMM0155/2020
 C241T C3037T G3994T C14408T A23403G AAAAAAAAAAAAAAAA29888-

EPI_ISL_438002
 2020-03-03 2020-05-12
 Italy hCoV-19/Austria/CeMM0156/2020
 C241T C3037T G3994T C14408T T22521K A23403G AAAAAAAA29896-

EPI_ISL_452099
 2020-03-03 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-97/2020
 C241T C313T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_452116 MT512444
 2020-03-03 2020-05-26
 United States SARS-CoV-2/human/USA/NJ-CDC-3036/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_452124 MT512424
 2020-03-03 2020-05-26
 United States SARS-CoV-2/human/USA/NC-CDC-6999/2020
 C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_452780
 2020-03-03 2020-05-27
 Spain hCoV-19/Spain/COV000678/2020
 C8782T T9477A C14805T C17285T G25979T T28144C C28657T C28863T

EPI_ISL_454447
 2020-03-03 2020-05-28
 Sweden hCoV-19/Sweden/20-08060/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_454448
 2020-03-03 2020-05-28
 Sweden hCoV-19/Sweden/20-08071/2020
 C241T C1190T C3037T C9857T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_454449
 2020-03-03 2020-05-28
 Sweden hCoV-19/Sweden/20-08072/2020
 C241T C3037T C9693T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_454450
 2020-03-03 2020-05-28
 Sweden hCoV-19/Sweden/20-08073/2020
 C241T C3037T C14408T G22583A A23403G

EPI_ISL_454755
 2020-03-03 2020-05-29
 Netherlands hCoV-19/Netherlands/NoordHolland_10006/2020
 ATTAAAGGTTTAT1- G1397A C4755T G11083T A18800T T28688C G29742T AAAAAA29898-

EPI_ISL_454870
 2020-03-03 2020-05-29
 Sweden hCoV-19/Sweden/20-50055/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_454872
 2020-03-03 2020-05-29
 Sweden hCoV-19/Sweden/20-50089/2020
 C241T C3037T A13947T C14408T A23403G GGG28881AAC

EPI_ISL_454873
 2020-03-03 2020-05-29
 Sweden hCoV-19/Sweden/20-50090/2020
 C241T C3037T A13947T C14408T A23403G GGG28881AAC

EPI_ISL_454878
 2020-03-03 2020-05-29
 Sweden hCoV-19/Sweden/20-50099/2020
 C241T C3037T C3373A C14408T A23403G GGG28881AAC

EPI_ISL_454879
 2020-03-03 2020-05-29
 Sweden hCoV-19/Sweden/20-50101/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_454880
 2020-03-03 2020-05-29
 Sweden hCoV-19/Sweden/20-50104/2020
 C241T C3037T C14408T A23403G

EPI_ISL_454881
 2020-03-03 2020-05-29
 Sweden hCoV-19/Sweden/20-50107/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_454913
 2020-03-03 2020-05-29
 China hCoV-19/Wuhan/HB-WH1-136/2020
 A9243G G11083T

EPI_ISL_454914
 2020-03-03 2020-05-29
 China hCoV-19/Wuhan/HB-WH1-137/2020
 C23538T T25382C

EPI_ISL_454917
 2020-03-03 2020-05-29
 China hCoV-19/Wuhan/HB-WH1-141/2020
 T711A C10594T

EPI_ISL_454947
 2020-03-03 2020-05-29
 China hCoV-19/Wuhan/HB-WH3-191/2020
 C1707A T28144C

EPI_ISL_455324
 2020-03-03 2020-05-29
 Spain hCoV-19/Spain/Andalucia201649/2020
 C241T C3037T C8782T A20655T AA20657TG C20660A

EPI_ISL_455341
 2020-03-03 2020-05-29
 Spain hCoV-19/Spain/LaRioja201570/2020
 C8782T T9477A C14805T G18268A G25979T T28144C C28657T C28863T TATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29832-

EPI_ISL_455342
 2020-03-03 2020-05-29
 Spain hCoV-19/Spain/LaRioja201572/2020
 A29T T87G T10849C G25979T G27915A T28144C TATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29832-

EPI_ISL_455343
 2020-03-03 2020-05-29
 Spain hCoV-19/Spain/LaRioja201576/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_455372
 2020-03-03 2020-05-29
 China hCoV-19/Wuhan/HB-WH2-151/2020
 C8529T G10412T TG14865-

EPI_ISL_455377
 2020-03-03 2020-05-29
 China hCoV-19/Wuhan/HB-WH3-177/2020
 G18412- C22482T

EPI_ISL_455382
 2020-03-03 2020-05-29
 China hCoV-19/Wuhan/HB-WH3-187/2020
 C2980A G3013T A3298T C14768A T20965- C22482T

EPI_ISL_455383
 2020-03-03 2020-05-29
 China hCoV-19/Wuhan/HB-WH3-188/2020
 C11481A TG14865- C27925A

EPI_ISL_455410
 2020-03-03 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM2-275/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- T13243C T14684C CC18109-T

EPI_ISL_455596
 2020-03-03 2020-06-01
 Australia hCoV-19/Australia/VPRL004/2020
 G1397A G11083T A18425C G26730T T28688C C28868A G29742T

EPI_ISL_455853
 2020-03-03 2020-06-01
 Sweden hCoV-19/Sweden/20-50100/2020
 C241T C3037T C5730T C14408T A23403G G25456T GGG28881AAC

EPI_ISL_455854
 2020-03-03 2020-06-01
 Sweden hCoV-19/Sweden/20-50103/2020
 C241T C1190T C3037T C9857T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_455855
 2020-03-03 2020-06-01
 Sweden hCoV-19/Sweden/20-50105/2020
 C241T C3037T C14408T C23393T A23403G

EPI_ISL_456190
 2020-03-03 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1109/2020
 C3096T G11083T C12781T G13627T C14805T C15540T C15656T G17944T A21863G G26144T A28338G

EPI_ISL_459965
 2020-03-03 2020-06-05
 Morocco hCoV-19/Morocco/6887/2020
 ATTAAAGGTTTATACCTTC1- C241T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_461114
 2020-03-03 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_679/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T C28344A GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_464294
 2020-03-03 2020-06-11
 United Kingdom hCoV-19/England/201021555/2020
 C11074T G11083T C14805T T17247C G22468K G26144T

EPI_ISL_464295
 2020-03-03 2020-06-11
 United Kingdom hCoV-19/England/201021557/2020
 G11083T C14805T T17247C G26144T C26353Y C28253Y

EPI_ISL_464296
 2020-03-03 2020-06-11
 United Kingdom hCoV-19/England/201021559/2020
 C241T C3037T C14408T A23403G C25350T

EPI_ISL_464318
 2020-03-03 2020-06-11
 United Kingdom hCoV-19/England/201040073/2020
 C241T T1927W C3037T C14408T A19304R A23403G

EPI_ISL_464323
 2020-03-03 2020-06-11
 United Kingdom hCoV-19/England/201040079/2020
 C241T T1456Y C3037T T7090K C14408T G15829K G20098K C22530Y A23403G G24077K

EPI_ISL_464356
 2020-03-03 2020-06-11
 United Kingdom hCoV-19/England/201060004/2020
 C241T C3037T C14408T G20434T A23403G C25350T C26858T

EPI_ISL_464361
 2020-03-03 2020-06-11
 United Kingdom hCoV-19/England/201060015/2020
 C241T C3037T G13348K C14408T A23403G C27046T GGG28881AAC

EPI_ISL_464363
 2020-03-03 2020-06-11
 United Kingdom hCoV-19/England/201060018/2020
 T514C ATG1605- C16375Y

EPI_ISL_464365
 2020-03-03 2020-06-11
 United Kingdom hCoV-19/England/201060020/2020
 C241T C3037T C14408T C20031A A22538R A23403G C27046T GGG28881AAC

EPI_ISL_464372
 2020-03-03 2020-06-11
 United Kingdom hCoV-19/England/201060035/2020
 C241T C3037T T9668Y C14408T A23403G C25350T

EPI_ISL_464383
 2020-03-03 2020-06-11
 United Kingdom hCoV-19/England/201060052/2020
 C241T C1625Y C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_464401
 2020-03-03 2020-06-11
 United Kingdom hCoV-19/England/201060300/2020
 A1305T C2976Y G3774R C10408Y G11083T G26144T

EPI_ISL_464441
 2020-03-03 2020-06-11
 United Kingdom hCoV-19/England/201080049/2020
 C241T C3037T C4999Y C14408T A23403G GGG28881AAC

EPI_ISL_464443
 2020-03-03 2020-06-11
 United Kingdom hCoV-19/England/201080051/2020
 A113G C241T C3037T C14408T A23403G C26942T GGG28881AAC

EPI_ISL_464452
 2020-03-03 2020-06-11
 United Kingdom hCoV-19/England/201080064/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_464461
 2020-03-03 2020-06-11
 United Kingdom hCoV-19/England/201080078/2020
 C241T C3037T C14408T C20031A A23403G C27046T GGG28881AAC G29000K

EPI_ISL_469075
 2020-03-03 2020-06-17
 Sweden hCoV-19/Sweden/20-50106/2020
 C241T C3037T C14408T C21855T A23403G C27046T GGG28881AAC

EPI_ISL_479813
 2020-03-03 2020-07-01
 Japan hCoV-19/Japan/PG-0050/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C11752T C19170A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479814
 2020-03-03 2020-07-01
 Japan hCoV-19/Japan/PG-0051/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGA1- A6561G C11752T C19170A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479890
 2020-03-03 2020-07-01
 Japan hCoV-19/Japan/PG-0182/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C8782T C10615T G16381A T17877C T28144C G28878A G29742A TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_480052
 2020-03-03 2020-07-01
 Japan hCoV-19/Japan/PG-0383/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACT1- G3179A C6982T C8782T T28144C TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_480053
 2020-03-03 2020-07-01
 Japan hCoV-19/Japan/PG-0384/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- G3179A C6982T C8782T T28144C TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_482672
 2020-03-03 2020-07-05
 Singapore hCoV-19/Singapore/24nan/2020
 A23359G

EPI_ISL_482746 MT705205
 2020-03-03 2020-07-04
 Netherlands SARS-CoV-2/human/NLD/Leiden-0001/2020
 ATTAAAGGTT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_483066
 2020-03-03 2020-07-07
 Australia hCoV-19/Australia/SAP098/2020
 A1- G1397A G11083T A18425C G26730T T28688C C28868A G29742T

EPI_ISL_488202
 2020-03-03 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F5ED/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A113G C241T C3037T C14408T A23403G C26942T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488219
 2020-03-03 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F5A1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G24077T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488244
 2020-03-03 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F5B0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488450
 2020-03-03 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F5DE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A113G C241T C3037T C14408T A23403G C26942T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488760
 2020-03-03 2020-07-14
 United Kingdom hCoV-19/England/NORT-281023/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488803
 2020-03-03 2020-07-14
 United Kingdom hCoV-19/England/NORT-28106F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3994T C14408T G15910T TTA21991- A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492397
 2020-03-03 2020-07-20
 United Kingdom hCoV-19/England/BRIS-1854521/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7528T C14408T C17762T A23403G C25350T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493139 MT781414
 2020-03-03 2020-07-21
 Thailand SARS-CoV-2/human/THA/MUMT-4/2020
 ATTAAAGGT1- A1515G C9223T C14805T A17799G T21765G G26144T GTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29828-

EPI_ISL_500097
 2020-03-03 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A4F10/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T C20031A A23403G C27046T GGG28881AAC C29870A

EPI_ISL_524477
 2020-03-03 2020-08-28
 Switzerland hCoV-19/Switzerland/ZH-1000478309/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T C14408T A23403G GGG28881AAC AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_524479
 2020-03-03 2020-08-28
 Switzerland hCoV-19/Switzerland/ZH-1000478554/2020
 C241T C3037T C14408T C21178T A23403G C24026T GGG28881AAC AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_524482
 2020-03-03 2020-08-28
 Switzerland hCoV-19/Switzerland/ZH-1000478518/2020
 C241T C3037T C14408T C14708Y A23403G GGG28881AAC T29148C AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_524484
 2020-03-03 2020-08-28
 Switzerland hCoV-19/Switzerland/SZ-1000478990/2020
 ATTAAA1- C241T C3037T C4777T C14408T C23086T A23403G C27046T A27764C GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_530028
 2020-03-03 2020-09-10
 Spain hCoV-19/Spain/MD-LP102-1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C14404T C14703T C19983T A20239G C26088T T28144C ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_537403
 2020-03-03 2020-09-16
 Spain hCoV-19/Spain/RI-CSIC-99005860/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T AATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29849-

EPI_ISL_537811
 2020-03-03 2020-09-16
 Spain hCoV-19/Spain/RI-CSIC-98002288/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C8782T C26088T G27915A T28144C AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_539500
 2020-03-03 2020-09-18
 Spain hCoV-19/Spain/AR-ISCIII-201435/2020
 G11071C G11083T C24382T

EPI_ISL_539549
 2020-03-03 2020-09-18
 Spain hCoV-19/Spain/CT-ISCIII-202044/2020
 C241T C3037T G8330C G8470A C14408T A22496G A23403G ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_540998
 2020-03-03 2020-09-22
 South korea hCoV-19/South Korea/IHC1215/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C3168T C8090T G11083T C14805T T17247C G26144T AAAAAAAAAAAAAAAA29888-

EPI_ISL_540999
 2020-03-03 2020-09-22
 South korea hCoV-19/South Korea/IHC1217/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCAC1- C3168T C8090T G11083T C14805T T17247C G26144T G27470A AAAAAAAAAAAAAAAA29888-

MT873497
 2020-03-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00002/2020
 ATTAAA1- G11083T C14805T T17247C G26144T G28895T

EPI_ISL_413598
 2020-03-04 2020-03-08
 Australia hCoV-19/Australia/NSW12/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C884T G1397A G8653T G11083T C24381T G28457A T28688C C29627T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_413599
 2020-03-04 2020-03-08
 Australia hCoV-19/Australia/NSW13/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- G1397A C2113T G11083T C18928T C26213Y T28688C G29374A CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_414017
 2020-03-04 2020-03-10
 Brazil hCoV-19/Brazil/SPBR-04/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_414027
 2020-03-04 2020-03-10
 United Kingdom hCoV-19/Scotland/CVR05/2020
 C241T C3037T C14408T A23403G A26530G

EPI_ISL_414045
 2020-03-04 2020-03-11
 Brazil hCoV-19/Brazil/RJ-314/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C3037T C14408T A23403G GAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29795-

EPI_ISL_414363
 2020-03-04 2020-03-11
 United States hCoV-19/USA/WA-UW15/2020
 C8782T C17747T A17858G C18060T C23758T T28144C G29861A G29864A

EPI_ISL_414487
 2020-03-04 2020-03-12
 Ireland hCoV-19/Ireland/COR-20134/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_414500
 2020-03-04 2020-03-12
 United Kingdom hCoV-19/England/Sheff01/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_414578
 2020-03-04 2020-03-13
 Chile hCoV-19/Chile/Talca-2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C8782T C17470T G18907K C26088T T28144C G28580T ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_414597
 2020-03-04 2020-03-14
 United States hCoV-19/USA/WA-UW28/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACT1- T150C T153G T5860C C8782T C17747T A17858G C18060T T28144C

EPI_ISL_414631
 2020-03-04 2020-03-15
 France hCoV-19/France/GE1973/2020
 C241T C3037T C14408T A23403G

EPI_ISL_414632
 2020-03-04 2020-03-15
 France hCoV-19/France/GE1977/2020
 G210T C241T C2416T C3037T C14408T A23403G C24378T G25563T G29543T A29876C

EPI_ISL_414633
 2020-03-04 2020-03-15
 France hCoV-19/France/IDF1980/2020
 C241T C2416T C3037T C14408T A23403G G25563T AATGA29865CCCAT A29871T A29887G

EPI_ISL_414634
 2020-03-04 2020-03-15
 France hCoV-19/France/HF1986/2020
 T18C A26- C28T C241T C1059T C3037T C5348T A8651G C14408T A23403G C25046G G25563T A29866C

EPI_ISL_414635
 2020-03-04 2020-03-15
 France hCoV-19/France/HF1988/2020
 G105T C241T C1059T C3037T C14408T A20766G A23403G G25563T

EPI_ISL_414636
 2020-03-04 2020-03-15
 France hCoV-19/France/HF1989/2020
 A26- C28T G105T C241T C1059T C3037T C14408T A15213G A20766G A23403G G25563T G26199T

EPI_ISL_414637
 2020-03-04 2020-03-15
 France hCoV-19/France/HF1993/2020
 T13A C241T C2416T C3037T C14408T C19884T A23403G G25563T A29888G A29892G A29896G A29900G

EPI_ISL_414638
 2020-03-04 2020-03-15
 France hCoV-19/France/HF1995/2020
 C241T C2416T C3037T T12722C C14408T A23403G G25563T

EPI_ISL_414646
 2020-03-04 2020-03-15
 Finland hCoV-19/Finland/FIN-266/2020
 C241T C3037T C14408T A23403G A26530G GTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29808-

EPI_ISL_415105
 2020-03-04 2020-03-16
 Brazil hCoV-19/Brazil/BA-312/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C313T C3037T C14408T A23403G A26945T GGG28881AAC GAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29795-

EPI_ISL_415151 MT370842
 2020-03-04 2020-03-16
 United States SARS-CoV-2/human/USA/NY2-PV08100/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T TATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29791-

EPI_ISL_415629
 2020-03-04 2020-03-18
 United Kingdom hCoV-19/Scotland/EDB004/2020
 C241T C3037T C14408T A23403G

EPI_ISL_415704
 2020-03-04 2020-03-19
 Switzerland hCoV-19/Switzerland/BE2536/2020
 ATTAAAGG1- C241T C3037T C14408T C15324T A23403G

EPI_ISL_416029
 2020-03-04 2020-03-20
 Brazil hCoV-19/Brazil/SPBR-08/2020
 C241T C313T C3037T C14408T A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416031
 2020-03-04 2020-03-20
 Brazil hCoV-19/Brazil/SPBR-09/2020
 C241T C3037T C14408T A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416032
 2020-03-04 2020-03-20
 Brazil hCoV-19/Brazil/SPBR-10/2020
 C14805T T17247C G26144T GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_416034
 2020-03-04 2020-03-20
 Brazil hCoV-19/Brazil/SPBR-12/2020
 C241T C3037T G10265A G11083T C14408T A23403G GGG28881AAC G29868T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_416487 MT233523
 2020-03-04 2020-03-22
 Spain SARS-CoV-2/human/ESP/Valencia8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_416494
 2020-03-04 2020-03-22
 France hCoV-19/France/N2223/2020
 A187G C241T C3037T C14408T A23403G AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_416747
 2020-03-04 2020-03-23
 France hCoV-19/France/Lyon_487/2020
 C241T C3037T C14408T C15324T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_416748
 2020-03-04 2020-03-23
 France hCoV-19/France/Lyon_508/2020
 C241T C1059T C2306T C3037T C14408T C15952T G20134A A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_416749
 2020-03-04 2020-03-23
 France hCoV-19/France/Valence_532/2020
 C241T A618G C3037T C14408T C15324T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_416752
 2020-03-04 2020-03-23
 France hCoV-19/France/Clermont-Ferrand_650/2020
 C241T C3037T C14408T C15324T A23403G A23720G AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_416994
 2020-03-04 2020-03-23
 Spain hCoV-19/Spain/CastillayLeon201437/2020
 C8782T T9477A C14805T C18582T G25979T T28144C C28657T C28863T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_417010
 2020-03-04 2020-03-23
 Spain hCoV-19/Spain/Madrid201442/2020
 C241T C3037T C14408T A20268G A23403G AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_417091 MT627291
 2020-03-04 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S38/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417092 MT627300
 2020-03-04 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S39/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417102 MT627260
 2020-03-04 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S49/2020
 C8782T C17747T A17858G C18060T T28144C C29250T

EPI_ISL_417116 MT627306
 2020-03-04 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S63/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417120 MT627240
 2020-03-04 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S67/2020
 C8782T C17747T A17858G C18060T T28144C A28709T

EPI_ISL_417121 MT627277
 2020-03-04 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S68/2020
 C8782T C17747T A17858G C18060T T28144C A28709T

EPI_ISL_417222
 2020-03-04 2020-03-25
 United Kingdom hCoV-19/England/20104003002/2020
 C241T C3037T C14408T A23403G C29632Y

EPI_ISL_417232
 2020-03-04 2020-03-25
 United Kingdom hCoV-19/England/20104008902/2020
 C241T C1514T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_417255
 2020-03-04 2020-03-25
 United Kingdom hCoV-19/England/20108007002/2020
 C241T C3037T C14408T A23403G C25350T

EPI_ISL_417264
 2020-03-04 2020-03-25
 United Kingdom hCoV-19/England/20109050306/2020
 T514C ATG1605-

EPI_ISL_417320 MT419842
 2020-03-04 2020-03-25
 United States SARS-CoV-2/human/USA/CA-SCCPHD-UC16/2020
 C7815T G29711T

EPI_ISL_417334
 2020-03-04 2020-03-25
 France hCoV-19/France/Lyon_06056/2020
 C241T C3037T C14408T C15324T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_417386
 2020-03-04 2020-03-25
 Australia hCoV-19/Australia/NSW21/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1397A G11083T G11634T T28688C G29374A G29742T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417422
 2020-03-04 2020-03-25
 Belgium hCoV-19/Belgium/DHWM-03041/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T A23403G GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_417424
 2020-03-04 2020-03-25
 Belgium hCoV-19/Belgium/Human/KA-03042/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T A17215G A23403G A26530G CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_417426
 2020-03-04 2020-03-25
 Belgium hCoV-19/Belgium/SQ-03043/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T A23403G C27046T GGG28881AAC TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_417444 GWHACDD01000001 MT240479
 2020-03-04 2020-03-25
 Pakistan SARS-CoV-2/Gilgit1/Human/2020/PAK
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C884T C1348T G1397A C9159T G11083T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_417444 GWHACDD01000001 MT240479
 2020-03-04 2020-03-25
 Pakistan SARS-CoV-2/Gilgit1/Human/2020/PAK
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C884T C1348T G1397A C9159T G11083T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_417677
 2020-03-04 2020-03-27
 Iceland hCoV-19/Iceland/39/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_417681
 2020-03-04 2020-03-27
 Iceland hCoV-19/Iceland/37/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_417715
 2020-03-04 2020-03-27
 Iceland hCoV-19/Iceland/45/2020
 C241T C1059T G1874A C3037T C14408T C18261T A23403G G25563T

EPI_ISL_417844
 2020-03-04 2020-03-27
 Iceland hCoV-19/Iceland/36/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_417846
 2020-03-04 2020-03-27
 Iceland hCoV-19/Iceland/40/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_417923
 2020-03-04 2020-03-27
 Italy hCoV-19/Italy/INMI5/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T C14408T A20268G A23403G TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_417989
 2020-03-04 2020-03-28
 Portugal hCoV-19/Portugal/PT0005/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C335T C3037T C14408T G20398A A23403G A26530G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_418011
 2020-03-04 2020-03-28
 Portugal hCoV-19/Portugal/PT0026/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G C25791T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_418208
 2020-03-04 2020-03-29
 Senegal hCoV-19/Senegal/020/2020
 C241T C1059T C3037T T13006C C14408T A23403G G25563T C25688T

EPI_ISL_418222
 2020-03-04 2020-03-29
 France hCoV-19/France/CVL2000/2020
 C241T C3037T C14408T C15324T C18656T A23403G C25433T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_418252
 2020-03-04 2020-03-04
 Spain hCoV-19/Spain/Madrid201449/2020
 C8782T TGA21248- C26088T T28144C GAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29795-

EPI_ISL_418270
 2020-03-04 2020-03-04
 Belgium hCoV-19/Belgium/JL-03044/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G C27046T GGG28881AAC AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_418988
 2020-03-04 2020-03-31
 Belgium hCoV-19/Belgium/JRH-030459/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T T19299G A23403G C27046T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_418989
 2020-03-04 2020-03-31
 Belgium hCoV-19/Belgium/RT-030460/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C575T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_419233
 2020-03-04 2020-04-01
 Spain hCoV-19/Spain/Canarias201495/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

EPI_ISL_419709
 2020-03-04 2020-04-03
 Spain hCoV-19/Spain/PaisVasco201602/2020
 C8782T C8874T C14805T A23586G G25979T T28144C C28657T C28863T CTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29788-

EPI_ISL_420101
 2020-03-04 2020-04-05
 Singapore hCoV-19/Singapore/24/2020
 ATTA1- A23359G TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_420136
 2020-03-04 2020-04-05
 Norway hCoV-19/Norway/1694/2020
 ATTAAAG1- T7876A G11083T G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_420314
 2020-03-04 2020-04-06
 Belgium hCoV-19/Belgium/NL-030447/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420319
 2020-03-04 2020-04-06
 Belgium hCoV-19/Belgium/GJ-030458/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1487A C2094T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420324
 2020-03-04 2020-04-06
 Belgium hCoV-19/Belgium/DVBJ-030468/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420442
 2020-03-04 2020-04-06
 Belgium hCoV-19/Belgium/BGM-030444/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4320T C14408T C21590T A23403G G25563T C25688T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420443
 2020-03-04 2020-04-06
 Belgium hCoV-19/Belgium/RA-030445/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G20398A A23403G A26530G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420447
 2020-03-04 2020-04-06
 Belgium hCoV-19/Belgium/DJ-030452/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T T8022G T13402G C14408T A23403G C27046T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_420448
 2020-03-04 2020-04-06
 Belgium hCoV-19/Belgium/GSA-030454/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420454
 2020-03-04 2020-04-06
 Belgium hCoV-19/Belgium/VJP-030463/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T A4050C T4053C T8022G T13402G C14408T A23403G C27046T T28785G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_420534
 2020-03-04 2020-04-06
 Australia hCoV-19/Australia/WA06/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1714T C3037T C14408T A23403G C25350T GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_420788 MT304481
 2020-03-04 2020-04-06
 United States SARS-CoV-2/human/USA/GA_1445/2020
 T490A C3177T C8782T T18736C C24034T T26729C G28077C T28144C A29700G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_422407
 2020-03-04 2020-04-10
 Taiwan hCoV-19/Taiwan/NTU04/2020
 C1288T C6312A G11083T C13730T C23929T C28311T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_424344 MT528239
 2020-03-04 2020-04-12
 Italy SARS-CoV-2/human/ITA/INMI10/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C2062T C3037T C14408T A23403G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_424667
 2020-03-04 2020-04-13
 Mexico hCoV-19/Mexico/EdoMex-InDRE_03/2020
 C8782T C17470T C26088T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_424858
 2020-03-04 2020-04-13
 United States hCoV-19/USA/GA_1621/2020
 C241T C3037T C14408T T19839C T22016W A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424869
 2020-03-04 2020-04-13
 United States hCoV-19/USA/MD_0026/2020
 C241T C3037T C14408T G15672T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424878
 2020-03-04 2020-04-13
 United States hCoV-19/USA/NJ_3592/2020
 C241T C1059T C3037T C14408T GG18505RK T22270Y TT22274WK A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424901
 2020-03-04 2020-04-13
 United States hCoV-19/USA/NJ_3201/2020
 C241T C3037T C14408T C18877T G19847A A23403G G25563T A28480T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424906
 2020-03-04 2020-04-13
 United States hCoV-19/USA/NY_1922/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424911
 2020-03-04 2020-04-13
 United States hCoV-19/USA/MA_9704/2020
 C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424912
 2020-03-04 2020-04-13
 United States hCoV-19/USA/MA_9889/2020
 C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_425803
 2020-03-04 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR72/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C25350T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_426027
 2020-03-04 2020-04-14
 United States hCoV-19/USA/NY-Wadsworth-10683-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- A2480G C2558T G11083T C14805T C17010A C21575T G26144T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_426028
 2020-03-04 2020-04-14
 United States hCoV-19/USA/NY-Wadsworth-10690-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T G10523C C12119T C14408T C18086A A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426029
 2020-03-04 2020-04-14
 United States hCoV-19/USA/NY-Wadsworth-10695-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T G28808T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426030
 2020-03-04 2020-04-14
 United States hCoV-19/USA/NY-Wadsworth-10703-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426031
 2020-03-04 2020-04-14
 United States hCoV-19/USA/NY-Wadsworth-10704-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426032
 2020-03-04 2020-04-14
 United States hCoV-19/USA/NY-Wadsworth-10707-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T C25611T C25693T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426033
 2020-03-04 2020-04-14
 United States hCoV-19/USA/NY-Wadsworth-10935-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T G28808T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426034
 2020-03-04 2020-04-14
 United States hCoV-19/USA/NY-Wadsworth-10955-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426035
 2020-03-04 2020-04-14
 United States hCoV-19/USA/NY-Wadsworth-10957-02/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426036
 2020-03-04 2020-04-14
 United States hCoV-19/USA/NY-Wadsworth-10958-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426425 MT344953
 2020-03-04 2020-04-15
 United States SARS-CoV-2/human/USA/MD_0027/2020
 C241T G558K C3037T C14408T G16508K C18877T A23403G G24933K G25563T C26735Y T29244Y AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_429136
 2020-03-04 2020-04-23
 Sweden hCoV-19/Sweden/20-50048/2020
 C241T G1306T C3037T G11535T A12790G C13568T C14408T A23403G

EPI_ISL_429137
 2020-03-04 2020-04-23
 Sweden hCoV-19/Sweden/20-50076/2020
 C241T C3037T C13517T C14408T A23403G A26530G

EPI_ISL_429341
 2020-03-04 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI109/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_430113 MT627638
 2020-03-04 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S259/2020
 C8782T T15927G C17747T A17858G C18060T C26936T T28144C

EPI_ISL_430133 MT627618
 2020-03-04 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S279/2020
 C8782T C17747T A17858G C18060T C23758T T28144C

EPI_ISL_430200 MT632571
 2020-03-04 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S162/2020
 C8782T G16377T C17747T A17858G C18060T T28144C

EPI_ISL_430201 MT632604
 2020-03-04 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S163/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_430279 MT632616
 2020-03-04 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S241/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_430860
 2020-03-04 2020-04-28
 Sweden hCoV-19/Sweden/20-50043/2020
 C241T C3037T A12790G C13568T C14408T A23403G

EPI_ISL_435594
 2020-03-04 2020-05-05
 United States hCoV-19/USA/CA-SCCPHD-UC115/2020
 C10834T C17104T

EPI_ISL_435596
 2020-03-04 2020-05-05
 United States hCoV-19/USA/CA-SCCPHD-UC117/2020
 G9653T C27493T G29711T

EPI_ISL_436047 MT434786
 2020-03-04 2020-05-05
 United States SARS-CoV-2/human/USA/NY-CDC-SURV0052NYC/2020
 A6639G C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_438003
 2020-03-04 2020-05-12
 Austria hCoV-19/Austria/CeMM0157/2020
 C241T C3037T G12832A C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_438004
 2020-03-04 2020-05-12
 Austria hCoV-19/Austria/CeMM0158/2020
 C241T C3037T G12832A C14408T T22521K A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_438005
 2020-03-04 2020-05-12
 Austria hCoV-19/Austria/CeMM0159/2020
 C241T C3037T G12832A C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAA29889-

EPI_ISL_438006
 2020-03-04 2020-05-12
 Austria hCoV-19/Austria/CeMM0160/2020
 C241T C3037T G12832A C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_447843 MT472622
 2020-03-04 2020-05-14
 United States SARS-CoV-2/human/USA/MD-CDC-0025/2020
 C241T C1221Y C3037T C5211Y C14408T G14874K C16586Y C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_450120
 2020-03-04 2020-05-20
 United States hCoV-19/USA/NY-PV09444/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C3037T A8565G C14408T C18877T A23403G G25563T GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_450508
 2020-03-04 2020-05-21
 Lebanon hCoV-19/Lebanon/S1_758/2020
 CT40AC C241T C3037T C14408T C18877T A23403G G25563T

EPI_ISL_450511
 2020-03-04 2020-05-21
 Lebanon hCoV-19/Lebanon/S4_761/2020
 C37G CT40AC C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_452254
 2020-03-04 2020-05-27
 United Kingdom hCoV-19/England/20109003304/2020
 T514C ATG1605- C29400Y

EPI_ISL_452351
 2020-03-04 2020-05-27
 China hCoV-19/Beijing/DT-travelIT04/2020
 

EPI_ISL_454871
 2020-03-04 2020-05-29
 Sweden hCoV-19/Sweden/20-50088/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_454874
 2020-03-04 2020-05-29
 Sweden hCoV-19/Sweden/20-50091/2020
 C241T C3037T C14408T G22583A A23403G

EPI_ISL_454875
 2020-03-04 2020-05-29
 Sweden hCoV-19/Sweden/20-50093/2020
 C241T C3037T C14408T C23393T A23403G

EPI_ISL_454876
 2020-03-04 2020-05-29
 Sweden hCoV-19/Sweden/20-50096/2020
 C241T C3037T C5730T C14408T A23403G GGG28881AAC

EPI_ISL_454877
 2020-03-04 2020-05-29
 Sweden hCoV-19/Sweden/20-50098/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_454882
 2020-03-04 2020-05-29
 Sweden hCoV-19/Sweden/20-50136/2020
 C241T C3037T C9857T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_454883
 2020-03-04 2020-05-29
 Sweden hCoV-19/Sweden/20-50139/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_454884
 2020-03-04 2020-05-29
 Sweden hCoV-19/Sweden/20-50144/2020
 C241T C3037T C14408T A23403G A26530G G28739T

EPI_ISL_454885
 2020-03-04 2020-05-29
 Sweden hCoV-19/Sweden/20-50147/2020
 C241T C3037T C14408T A23403G A26530G G28739T

EPI_ISL_454886
 2020-03-04 2020-05-29
 Sweden hCoV-19/Sweden/20-50151/2020
 C241T C3037T C14408T C23393T A23403G

EPI_ISL_454887
 2020-03-04 2020-05-29
 Sweden hCoV-19/Sweden/20-50153/2020
 C241T C3037T C9857T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_454888
 2020-03-04 2020-05-29
 Sweden hCoV-19/Sweden/20-50155/2020
 C241T C3037T C9857T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_454976
 2020-03-04 2020-05-29
 China hCoV-19/Wuhan/HB-WH5-233/2020
 C21707T

EPI_ISL_455315
 2020-03-04 2020-05-29
 Spain hCoV-19/Spain/Andalucia201488/2020
 C241T C1059T C3037T C12400T C14408T A23403G G25563T

EPI_ISL_455338
 2020-03-04 2020-05-29
 Spain hCoV-19/Spain/LaRioja201563/2020
 G4148T C8782T T9477A C14805T G25979T T28144C C28657T C28863T TATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29832-

EPI_ISL_455339
 2020-03-04 2020-05-29
 Spain hCoV-19/Spain/LaRioja201565/2020
 A30T CA3188GC A3889G A3943T A4020G T8724C C8782T T8854G T8869C C8980T T9477A C14805T G25979T T28144C C28657T C28863T TATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29832-

EPI_ISL_455352
 2020-03-04 2020-05-29
 Spain hCoV-19/Spain/PaisVasco201491/2020
 C241T C8782T C8874T C14408T A23403G G29734C ATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29850-

EPI_ISL_455353
 2020-03-04 2020-05-29
 Spain hCoV-19/Spain/PaisVasco201492/2020
 C241T C3037T C14408T A23403G T29822G TGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29840-

EPI_ISL_455846
 2020-03-04 2020-06-01
 Sweden hCoV-19/Sweden/20-08069/2020
 C241T C3037T C5730T C14408T A23403G GGG28881AAC

EPI_ISL_455849
 2020-03-04 2020-06-01
 Sweden hCoV-19/Sweden/20-50092/2020
 C241T C3037T C5730T C14408T A23403G GGG28881AAC

EPI_ISL_455850
 2020-03-04 2020-06-01
 Sweden hCoV-19/Sweden/20-50094/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_455851
 2020-03-04 2020-06-01
 Sweden hCoV-19/Sweden/20-50095/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_455852
 2020-03-04 2020-06-01
 Sweden hCoV-19/Sweden/20-50097/2020
 C241T C3037T G7042T C14408T A23403G GGG28881AAC

EPI_ISL_455856
 2020-03-04 2020-06-01
 Sweden hCoV-19/Sweden/20-50140/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_455857
 2020-03-04 2020-06-01
 Sweden hCoV-19/Sweden/20-50141/2020
 C241T C3037T C14408T C22277A A23403G C27046T GGG28881AAC

EPI_ISL_455859
 2020-03-04 2020-06-01
 Sweden hCoV-19/Sweden/20-50149/2020
 C241T C3037T C9857T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_455862
 2020-03-04 2020-06-01
 Sweden hCoV-19/Sweden/20-50156/2020
 C241T C3037T C9857T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_455873
 2020-03-04 2020-06-01
 Sweden hCoV-19/Sweden/20-50214/2020
 C241T C3037T C14408T C23393T A23403G

EPI_ISL_457728
 2020-03-04 2020-06-02
 Italy hCoV-19/Italy/2389/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_460116 MT520191
 2020-03-04 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00440/2020
 ATTAAAGGTTTA1- C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_460250 MT520325
 2020-03-04 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00438/2020
 ATTAAA1- C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAA29892-

EPI_ISL_461146
 2020-03-04 2020-06-06
 Netherlands hCoV-19/Netherlands/NoordBrabant_110/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- C17410T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_464343
 2020-03-04 2020-06-11
 United Kingdom hCoV-19/England/201040706/2020
 C241T C3037T C14408T G23126K A23403G

EPI_ISL_464344
 2020-03-04 2020-06-11
 United Kingdom hCoV-19/England/201040707/2020
 C241T C3037T C14408T G23126K A23403G

EPI_ISL_464362
 2020-03-04 2020-06-11
 United Kingdom hCoV-19/England/201060017/2020
 C241T C3037T C14408T A23403G G24077T

EPI_ISL_464380
 2020-03-04 2020-06-11
 United Kingdom hCoV-19/England/201060046/2020
 C241T C3037T C14408T G20434T A23403G C25350T C26858T

EPI_ISL_464389
 2020-03-04 2020-06-11
 United Kingdom hCoV-19/England/201060061/2020
 G1397A G11083T C12249T C21658T T28688C G29742T

EPI_ISL_464397
 2020-03-04 2020-06-11
 United Kingdom hCoV-19/England/201060144/2020
 G1397A C3117T G11083T A13889G C22452T G28109T T28688C G29742T

EPI_ISL_464399
 2020-03-04 2020-06-11
 United Kingdom hCoV-19/England/201060160/2020
 G1397A C3117T G3847K T6978Y G11083T A13889G A19939T C22513T G28109T T28688C G29742T

EPI_ISL_464402
 2020-03-04 2020-06-11
 United Kingdom hCoV-19/England/201060323/2020
 A2480G C2558T G11083T C14805T G26144T C26994T

EPI_ISL_464404
 2020-03-04 2020-06-11
 United Kingdom hCoV-19/England/201061034/2020
 A1515G C2862Y C9223T G11083T C14805T T17247C A17799G G26144T

EPI_ISL_464424
 2020-03-04 2020-06-11
 United Kingdom hCoV-19/England/201080012/2020
 T514C ATG1605- C21575T G28950R

EPI_ISL_464425
 2020-03-04 2020-06-11
 United Kingdom hCoV-19/England/201080013/2020
 T514C ATG1605- C21575T G28950R

EPI_ISL_464456
 2020-03-04 2020-06-11
 United Kingdom hCoV-19/England/201080071/2020
 C241T C3037T C14408T A23403G C25350T

EPI_ISL_464460
 2020-03-04 2020-06-11
 United Kingdom hCoV-19/England/201080077/2020
 A2480G C2558T G11083T C14805T T21072C G26144T

EPI_ISL_464508
 2020-03-04 2020-06-11
 United Kingdom hCoV-19/England/20109002904/2020
 C241T T898C C3037T C7834T C14408T A23403G C26907Y GGG28881AAC A29771C

EPI_ISL_464561
 2020-03-04 2020-06-11
 United Kingdom hCoV-19/England/20109041904/2020
 A2480G C2558T G11083T C14805T G26144T C26994T

EPI_ISL_468038
 2020-03-04 2020-06-16
 Australia hCoV-19/Australia/SAP099/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- G1397A G2778T G11083T A18425C G26730T T28688C C28868A G29742T

EPI_ISL_469076
 2020-03-04 2020-06-17
 Sweden hCoV-19/Sweden/20-50120/2020
 C241T C3037T C14408T A23403G A26530G

EPI_ISL_475552
 2020-03-04 2020-06-23
 Sweden hCoV-19/Sweden/20-08074/2020
 C14805T T17247C A20116G A21417G G26144T

EPI_ISL_479805
 2020-03-04 2020-07-01
 Japan hCoV-19/Japan/PG-0038/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C8782T A10555G G16381A T17877C T28144C G28878A G29742A AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_479806
 2020-03-04 2020-07-01
 Japan hCoV-19/Japan/PG-0039/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C8782T A10555G G16381A T17877C T28144C G28878A G29742A AATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29818-

EPI_ISL_479834
 2020-03-04 2020-07-01
 Japan hCoV-19/Japan/PG-0084/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C11752T C19170A ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_479835
 2020-03-04 2020-07-01
 Japan hCoV-19/Japan/PG-0087/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C8782T G16381A T17877C T28144C G28878A G29742A AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_479917
 2020-03-04 2020-07-01
 Japan hCoV-19/Japan/PG-0217/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- T4402C G5062T C8782T T28144C TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_480054
 2020-03-04 2020-07-01
 Japan hCoV-19/Japan/PG-0385/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- G3179A C6982T C8782T T28144C TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_480055
 2020-03-04 2020-07-01
 Japan hCoV-19/Japan/PG-0386/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- G3179A C6982T C8782T T28144C TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_480056
 2020-03-04 2020-07-01
 Japan hCoV-19/Japan/PG-0387/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- G3179A C6982T C8782T T28144C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_480057
 2020-03-04 2020-07-01
 Japan hCoV-19/Japan/PG-0388/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- G3179A C6982T C8782T T28144C TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_483194
 2020-03-04 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0515-SAN/2020
 ATTAAAGGTTTATACC1- C241T C1059T C1887T C3037T C14408T G22205C A23403G G25563T A29558G

EPI_ISL_489992
 2020-03-04 2020-07-15
 Malaysia hCoV-19/Malaysia/IMR-WC9205/2020
 ATTAAAGGTTTA1- G1467A C6312A G11083T C13730T C23929T C28311T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_489993
 2020-03-04 2020-07-15
 Malaysia hCoV-19/Malaysia/IMR-WC9174/2020
 TT2AC -5AGTGTGCCTATT G1467A C6312A G11083T C13730T C23929T C28311T -A29865CCCTGGGCTCCCGCCGGCTTCTATTGACTTGGGTTAATCGTGTGACCGCGGTGGCTGGCACGAAT A29871C A29874CCCTGGGGTTAGTATAGCTTAGTTAAACTTTCGTTTATTGCTAAAGGTTAATCACTGCTGTTTCCCGTGGGGGTGTGGCTAGGCTAAGCGTTTTGAGCTGCATTGCTGCGTGCTTGATGCTTGTCCCTTTTGATCGTGGTGATTTAGAGGGTGAACTCACTGGAACGGGGATGCTTGCATGTGTAATCTTACT A29877G AAA29879GCT A29884T A29886G AAAA29890GGCT AA29895GG AA29898CC A29903C

EPI_ISL_493329
 2020-03-04 2020-07-21
 Italy hCoV-19/Italy/INMI17/2020
 ATTAAAGGTTTATACCTT1- C241T C3037T C14408T A23403G A26530G T27501G GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_497999
 2020-03-04 2020-07-26
 South Korea hCoV-19/Korea/KCDC2098/2020
 ATTAAAG1- G5572T G11083T G13564T C14805T G15708T G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_498000
 2020-03-04 2020-07-26
 South Korea hCoV-19/Korea/KCDC2099/2020
 ATTAAA1- G5572T G11083T G13564T C14805T G15708T G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_498001
 2020-03-04 2020-07-26
 South Korea hCoV-19/Korea/KCDC2100/2020
 ATTAAAG1- G5572T G11083T G13564T C14805T G15708T G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_498003
 2020-03-04 2020-07-26
 South Korea hCoV-19/Korea/KCDC2102/2020
 ATTAAAG1- G5572T G9923C G11083T G13564T C14805T G15708T G26144T AAAAAAAAAAAAAAAAAAAA29884-

EPI_ISL_500106
 2020-03-04 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A50D0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G C23575T G23587C

EPI_ISL_501181
 2020-03-04 2020-07-31
 Malaysia hCoV-19/Malaysia/0956/2020
 ATTA1- C29870A

EPI_ISL_508936
 2020-03-04 2020-08-04
 France hCoV-19/France/ARA06032/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTT1- C241T C3037T C12116T C14408T C16640A A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_512990
 2020-03-04 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH721/2020
 C3037T C8782T C14408T C21549T A23403G G27281T G29742A

EPI_ISL_512991
 2020-03-04 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH722/2020
 C241T C3037T C8782T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_512992
 2020-03-04 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH723/2020
 C241T C3037T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_516086 MT483867
 2020-03-04 2020-05-18
 Italy SARS-CoV-2/human/ITA/78952/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C2910S C3037T C14408T C17822T A23403G A26530G G29462K GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_516087 MT483874
 2020-03-04 2020-05-18
 Italy SARS-CoV-2/human/ITA/78955/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C3037T G4255T C14408T T15893Y A23403G A26530G GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_516642
 2020-03-04 2020-08-21
 Germany hCoV-19/Berlin/ChVir-D679-14/2020
 ATTAAAGGTTTA1- C241T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_524481
 2020-03-04 2020-08-28
 Switzerland hCoV-19/Switzerland/AG-1000478772/2020
 C241T C3037T C9561Y C14408T A23403G GGG28881AAC T29148C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_524483
 2020-03-04 2020-08-28
 Switzerland hCoV-19/Switzerland/ZH-1000478869/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- A187G C241T C3037T C14408T A23403G C27494Y T27653C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_527928
 2020-03-04 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42176753/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G3239A C14408T C15324T G21800T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_530029
 2020-03-04 2020-09-10
 Spain hCoV-19/Spain/MD-LP102-2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G9479T C14408T A20268G A23403G C29171T ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_539505
 2020-03-04 2020-09-18
 Spain hCoV-19/Spain/AR-ISCIII-201664/2020
 G11083T G26144T

EPI_ISL_547560
 2020-03-04 2020-09-24
 Netherlands hCoV-19/Netherlands/ZH-RIVM-10079/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A26530G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT325569
 2020-03-04 2020-04-10
 United States SARS-CoV-2/human/USA/GA_1621/2020
 C241T C3037T C14408T T19839C T22016W A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

MT325587
 2020-03-04 2020-04-10
 United States SARS-CoV-2/human/USA/MD_0026/2020
 C241T C3037T C14408T G15672T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MT325596
 2020-03-04 2020-04-10
 United States SARS-CoV-2/human/USA/NJ_3592/2020
 C241T C1059T C3037T C14408T GG18505RK T22270Y TT22274WK A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MT325622
 2020-03-04 2020-04-10
 United States SARS-CoV-2/human/USA/NJ_3201/2020
 C241T C3037T C14408T C18877T G19847A A23403G G25563T A28480T AAAAAAAAAAAAAAAAAAAAA29883-

MT325627
 2020-03-04 2020-04-10
 United States SARS-CoV-2/human/USA/NY_1922/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MT325632
 2020-03-04 2020-04-10
 United States SARS-CoV-2/human/USA/MA_9704/2020
 C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MT325633
 2020-03-04 2020-04-10
 United States SARS-CoV-2/human/USA/MA_9889/2020
 C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MT483880
 2020-03-04 2020-05-18
 Italy SARS-CoV-2/human/ITA/78955/2020/P1
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C3037T G4255T C14408T G22205S A23403G A26530G GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_413650
 2020-03-05 2020-03-09
 United States hCoV-19/USA/WA15-UW11/2020
 A1T C8782T C17747T A17858G C18060T T23010C T28144C

EPI_ISL_413651
 2020-03-05 2020-03-09
 United States hCoV-19/USA/WA16-UW12/2020
 A1T T3G C8782T C17747T A17858G C18060T T23010C T28144C

EPI_ISL_413653
 2020-03-05 2020-03-09
 United States hCoV-19/USA/WA18-UW14/2020
 A1T A6T C8782T C17747T A17858G C18060T T28144C

EPI_ISL_413925 MT419835
 2020-03-05 2020-03-10
 United States SARS-CoV-2/human/USA/CA-CDPH-UC7/2020
 A1G A3046G C8782T A16467G C17747T A17858G C18060T C23185T T28144C

EPI_ISL_413928 MT419837
 2020-03-05 2020-03-10
 United States SARS-CoV-2/human/USA/CA-CDPH-UC9/2020
 A3046G C8782T A16467G G16975T C17747T A17858G C18060T C23185T T28144C

EPI_ISL_413931 MT419839
 2020-03-05 2020-03-10
 United States SARS-CoV-2/human/USA/CA-CDPH-UC11/2020
 A3046G C8782T A16467G G16975T C17747T A17858G C18060T C23185T T28144C

EPI_ISL_414366
 2020-03-05 2020-03-11
 United States hCoV-19/USA/WA-UW18/2020
 ATTAAAGGT1- C8782T C17747T A17858G C18060T T28144C -29904GAA

EPI_ISL_414367
 2020-03-05 2020-03-11
 United States hCoV-19/USA/WA-UW19/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACT1- GG260CC A263- C8782T C17747T A17858G C18060T C25731T T28144C AAAAAAAAA29895-

EPI_ISL_414368
 2020-03-05 2020-03-11
 United States hCoV-19/USA/WA-UW20/2020
 ATTAAAGGTTTAT1- A35T C8782T C17747T A17858G C18060T T28144C

EPI_ISL_414369
 2020-03-05 2020-03-11
 United States hCoV-19/USA/WA-UW21/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- TT77AA A80T A82T C84A G86A C8782T C17747T A17858G C18060T T28144C -29904AAAAAANANANANV

EPI_ISL_414467 LR878283
 2020-03-05 2020-03-12
 Netherlands hCoV-19/Netherlands/ZuidHolland_7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- ATG1605- C12068T C12621T TTA21991- GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_414561 LR878316
 2020-03-05 2020-03-13
 Netherlands hCoV-19/Netherlands/ZuidHolland_19/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3145T C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_414580
 2020-03-05 2020-03-13
 Chile hCoV-19/Chile/Santiago-2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C3393T C14408T A23403G GGG28881AAC CCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29835-

EPI_ISL_414588 MT188341
 2020-03-05 2020-03-13
 United States USA/MN1-MDH1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A6035G C8782T A16467G C17747T A17858G C18060T -C21385TTCT C23185T T28144C CCATGTGATTTTAATAGCTTCTT29837- TG29867CCTCTCGA C29870A A29892G AA29896GG

EPI_ISL_414593
 2020-03-05 2020-03-14
 United States hCoV-19/USA/WA-UW24/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- C8782T C17747T A17858G C18060T T28144C AAAAAAAA29896-

EPI_ISL_414594
 2020-03-05 2020-03-14
 United States hCoV-19/USA/WA-UW25/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAGATGGAGAGCCTTGTCCCTGGTT1- T3011C C3037T C14408T A23403G AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_414595
 2020-03-05 2020-03-14
 United States hCoV-19/USA/WA-UW26/2020
 A1- T3G C832T C8782T C17747T A17858G C18060T T28144C AAAA29900-

EPI_ISL_414598 MT198652
 2020-03-05 2020-03-16
 Spain SARS-CoV-2/human/ESP/Valencia003/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_414641
 2020-03-05 2020-03-15
 Finland hCoV-19/Finland/FIN-313/2020
 C241T C3037T C14408T C22277A A23403G C23635T C27046T GGG28881AAC GTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29808-

EPI_ISL_415605 MT252801
 2020-03-05 2020-03-18
 United States SARS-CoV-2/human/USA/WA-UW40/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGAT1- G261T C8782T C17747T A17858G C18060T T23010C T28144C TG29867AA C29870A -29904AAAAAAAAAAAAAAAA

EPI_ISL_415649
 2020-03-05 2020-03-18
 France hCoV-19/France/HF2039/2020
 C241T C1059T T1666C C3037T C14408T A23403G C23520T G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_415651
 2020-03-05 2020-03-18
 France hCoV-19/France/BFC2094/2020
 C241T C3037T G3728T C14408T C15324T A23403G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_415652
 2020-03-05 2020-03-18
 France hCoV-19/France/BFC2147/2020
 C241T C3037T C13051T C14408T C15324T A23403G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_416035
 2020-03-05 2020-03-20
 Brazil hCoV-19/Brazil/SPBR-13/2020
 C241T C313T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAA29891-

EPI_ISL_416036
 2020-03-05 2020-03-20
 Brazil hCoV-19/Brazil/SPBR-14/2020
 ATTAAAGGTTTATACCT1- C241T C3037T C14408T A23403G G25088T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416479
 2020-03-05 2020-03-22
 Georgia hCoV-19/Georgia/Tb-273/2020
 ATT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_416507
 2020-03-05 2020-03-22
 France hCoV-19/France/B2340/2020
 C3987T G11083T G20887A T23084C G26144T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_416743
 2020-03-05 2020-03-23
 Czech Republic hCoV-19/Czech Republic/ChVir1912/2020
 ATTAAAG1- C241T C3037T C14408T A23403G GGG28881AAC T29148C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_416751
 2020-03-05 2020-03-23
 France hCoV-19/France/Clermont-Ferrand_651/2020
 C241T C3037T C14408T C15324T G19684T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_417103 MT627236
 2020-03-05 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S50/2020
 C8782T C16466T C17747T A17858G C18060T T28144C

EPI_ISL_417107 MT627259
 2020-03-05 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S54/2020
 C8782T C16466T C17747T A17858G C18060T T28144C

EPI_ISL_417114 MT627282
 2020-03-05 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S61/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417122 MT627302
 2020-03-05 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S69/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417123 MT627250
 2020-03-05 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S70/2020
 C6813T C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417124 MT627294
 2020-03-05 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S71/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417126 MT627229
 2020-03-05 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S73/2020
 C8782T G11083T C17747T A17858G C18060T T28144C

EPI_ISL_417127 MT627278
 2020-03-05 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S74/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417128 MT627314
 2020-03-05 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S75/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417129 MT627238
 2020-03-05 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S76/2020
 C8782T A14604G C17747T A17858G C18060T C21911T T28144C

EPI_ISL_417132 MT627257
 2020-03-05 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S79/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417133 MT627247
 2020-03-05 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S80/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417136 MT627232
 2020-03-05 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S83/2020
 C8782T G14126A C17747T A17858G C18060T T28144C

EPI_ISL_417157 MT627256
 2020-03-05 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S104/2020
 C6317T C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417163 MT605816
 2020-03-05 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S110/2020
 C8782T T15927G C17747T A17858G C18060T C18401T C26936T T28144C

EPI_ISL_417167 MT627268
 2020-03-05 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S114/2020
 C6317T C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417252
 2020-03-05 2020-03-25
 United Kingdom hCoV-19/England/20108006003/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_417260
 2020-03-05 2020-03-25
 United Kingdom hCoV-19/England/20109035906/2020
 C241T C3037T C10116Y C14408T A23403G GGG28881AAC

EPI_ISL_417266
 2020-03-05 2020-03-25
 United Kingdom hCoV-19/England/20109050506/2020
 C241T C3037T C14408T A23403G C25350Y

EPI_ISL_417268
 2020-03-05 2020-03-25
 United Kingdom hCoV-19/England/20109050706/2020
 C2558T G11083T C14805T G26144T

EPI_ISL_417282
 2020-03-05 2020-03-25
 United Kingdom hCoV-19/England/20109056906/2020
 A2480G C2558T G11083T C14805T G26144T

EPI_ISL_417286
 2020-03-05 2020-03-25
 United Kingdom hCoV-19/England/20109093706/2020
 ATG1605- C20270T A29683T

EPI_ISL_417302
 2020-03-05 2020-03-25
 United Kingdom hCoV-19/England/20110000706/2020
 C241T C3037T C14408T A23403G G24077T

EPI_ISL_417384
 2020-03-05 2020-03-25
 Australia hCoV-19/Australia/NSW18/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1397A C5223T G11083T T22213C T28688C C29563T G29742T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417388
 2020-03-05 2020-03-25
 Australia hCoV-19/Australia/NSW25/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6312A G11083T C13730T C21034T C23929T C28311T C29732T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417519 MT374102
 2020-03-05 2020-03-27
 Taiwan SARS-CoV-2/human/TWN/CGMH-CGU-06/2020
 AT1- C1059T G1397A G11083T C23934T T28648C T28688C G29742T

EPI_ISL_417683
 2020-03-05 2020-03-27
 Iceland hCoV-19/Iceland/47/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_417851
 2020-03-05 2020-03-27
 Iceland hCoV-19/Iceland/53/2020
 A187G C241T C3037T C14408T A23403G

EPI_ISL_417988
 2020-03-05 2020-03-28
 Portugal hCoV-19/Portugal/PT0004/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G C29144T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_418223
 2020-03-05 2020-03-29
 France hCoV-19/France/HF2060/2020
 C241T C2416T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_418330
 2020-03-05 2020-03-05
 Canada hCoV-19/Canada/ON_PHL8580/2020
 A1- C8782T C17747T A17858G C18060T T18863C A24694T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418366
 2020-03-05 2020-03-05
 Canada hCoV-19/Canada/ON_PHL3350/2020
 A1- C241T C3037T A10630G C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418792
 2020-03-05 2020-03-31
 Belgium hCoV-19/Belgium/GL-030546/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1437T C3037T C14408T C23393T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_418796
 2020-03-05 2020-03-31
 Belgium hCoV-19/Belgium/VDLH-030548/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_418797
 2020-03-05 2020-03-31
 Belgium hCoV-19/Belgium/VDLH-030548/2020/P1
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_418798
 2020-03-05 2020-03-31
 Belgium hCoV-19/Belgium/GS-030549/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4320T C14408T C21590T A23403G G25563T C25688T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_418806
 2020-03-05 2020-03-31
 Belgium hCoV-19/Belgium/BG-030551/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_418848
 2020-03-05 2020-03-31
 Canada hCoV-19/Canada/BC_8159203/2020
 C8782T A17858G C18060T T28144C

EPI_ISL_418863
 2020-03-05 2020-03-31
 Belgium hCoV-19/Belgium/VS-030542/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C17002T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_419230
 2020-03-05 2020-04-01
 Spain hCoV-19/Spain/Andalucia201617/2020
 C8782T C26088T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_419238
 2020-03-05 2020-04-01
 Spain hCoV-19/Spain/PaisVasco201493/2020
 T9477A C14805T G25979T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_419566
 2020-03-05 2020-04-02
 Luxembourg hCoV-19/Luxembourg/LNS0641910/2020
 G11083T C14805T T17247C G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_420102
 2020-03-05 2020-04-05
 Singapore hCoV-19/Singapore/25/2020
 ATTAAAGG1- C18888T C21306T G24368C TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_420103
 2020-03-05 2020-04-05
 Singapore hCoV-19/Singapore/26/2020
 ATTAAAGGTTTA1- C17536Y C18680Y C21306T T27919Y G29773K TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_420104
 2020-03-05 2020-04-05
 Singapore hCoV-19/Singapore/27/2020
 ATT1- T9W A7479G G11083T C14805T T17247C C25572T G26144T TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_420139
 2020-03-05 2020-04-05
 Norway hCoV-19/Norway/1811/2020
 ATTAAAGGTTT1- C241T C3037T C14408T G15575T A23403G A26530G C29541T AAAAAA29898-

EPI_ISL_420317
 2020-03-05 2020-04-06
 Belgium hCoV-19/Belgium/RJ-030552/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T A4050C T4053C C14408T A23403G C27046T T28785G GGG28881AAC ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_420322
 2020-03-05 2020-04-06
 Belgium hCoV-19/Belgium/DBOM-030566/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1666C C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420325
 2020-03-05 2020-04-06
 Belgium hCoV-19/Belgium/DLDJ-030569/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A26530G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420329
 2020-03-05 2020-04-06
 Belgium hCoV-19/Belgium/GE-030573/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A12982G C14408T A23403G A26530G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420330
 2020-03-05 2020-04-06
 Belgium hCoV-19/Belgium/MCW-030574/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A13947T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420331
 2020-03-05 2020-04-06
 Belgium hCoV-19/Belgium/LY-030575/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A13947T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420334
 2020-03-05 2020-04-06
 Belgium hCoV-19/Belgium/GOF-030578/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4320T C14408T C21590T A23403G G25563T C25688T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420337
 2020-03-05 2020-04-06
 Belgium hCoV-19/Belgium/PAN-030681/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420339
 2020-03-05 2020-04-06
 Belgium hCoV-19/Belgium/SJ-030583/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420344
 2020-03-05 2020-04-06
 Belgium hCoV-19/Belgium/RJL-030588/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420348
 2020-03-05 2020-04-06
 Belgium hCoV-19/Belgium/FM-030592/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_420349
 2020-03-05 2020-04-06
 Belgium hCoV-19/Belgium/DD-030593/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T12139C A13947T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420353
 2020-03-05 2020-04-06
 Belgium hCoV-19/Belgium/LD-030597/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241Y C1376T C3037T A8072G C14408T C18131T A23403G GGG28881AAC C29774T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420354
 2020-03-05 2020-04-06
 Belgium hCoV-19/Belgium/BS-030598/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420367
 2020-03-05 2020-04-06
 Belgium hCoV-19/Belgium/JK-0305110/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420444
 2020-03-05 2020-04-06
 Belgium hCoV-19/Belgium/MF-030546/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420453
 2020-03-05 2020-04-06
 Belgium hCoV-19/Belgium/VF-030562/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T A4050C T13402G C14408T A23403G C27046T C28344A GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_420541
 2020-03-05 2020-04-06
 Slovenia hCoV-19/Slovenia/808/2020
 ATTAAA1- G11083T C14805T C23707T G26144T T27384C C28826T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_421171
 2020-03-05 2020-04-07
 Spain hCoV-19/Spain/Madrid_H12_1301/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421182
 2020-03-05 2020-04-07
 Belgium hCoV-19/Belgium/ULG-10001/2020
 C241T C1059T C3037T C14408T A23403G C23679T G25563T G28857A

EPI_ISL_424843
 2020-03-05 2020-04-13
 United States hCoV-19/USA/MA_0020/2020
 C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424853
 2020-03-05 2020-04-13
 United States hCoV-19/USA/FL_9590/2020
 G11083T C14805T A15779C T17247C G26144T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424854
 2020-03-05 2020-04-13
 United States hCoV-19/USA/FL_9655/2020
 T490A C3177T C8782T T18736C G19684T C24034T T26729C C27635Y G28077C T28144C A29700G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424859
 2020-03-05 2020-04-13
 United States hCoV-19/USA/GA_1847/2020
 T490A C3177T C8782T T18736C C24034T T26729C G28077C T28144C A29700G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424874
 2020-03-05 2020-04-13
 United States hCoV-19/USA/NE_6605/2020
 G1440A G2891A C12651T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424881
 2020-03-05 2020-04-13
 United States hCoV-19/USA/PA_1802/2020
 C241T C3037T C14408T A20268G A23403G G29734C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424882
 2020-03-05 2020-04-13
 United States hCoV-19/USA/PA_1881/2020
 C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424887
 2020-03-05 2020-04-13
 United States hCoV-19/USA/RI_0702/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424889
 2020-03-05 2020-04-13
 United States hCoV-19/USA/UT_8199/2020
 C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424902
 2020-03-05 2020-04-13
 United States hCoV-19/USA/SC_3520/2020
 T490A C3177T C8782T T18736C C24034T T26729C G28077C T28144C A29700G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424905
 2020-03-05 2020-04-13
 United States hCoV-19/USA/SC_3572/2020
 C241T C3037T G4255T C14408T A23403G A26530G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424908
 2020-03-05 2020-04-13
 United States hCoV-19/USA/MA_8932/2020
 C241T C2416T C3037T C14408T A23403G G25563T G26233T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424909
 2020-03-05 2020-04-13
 United States hCoV-19/USA/MA_8933/2020
 C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424910
 2020-03-05 2020-04-13
 United States hCoV-19/USA/MA_9703/2020
 C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424913
 2020-03-05 2020-04-13
 United States hCoV-19/USA/MA_1355/2020
 C14805T T17247C G26144T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_425806
 2020-03-05 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR76/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6364A C14408T A18710G A20268G A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_425819
 2020-03-05 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB002/2020
 T514C C19484T

EPI_ISL_426037
 2020-03-05 2020-04-14
 United States hCoV-19/USA/NY-Wadsworth-10999-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426038
 2020-03-05 2020-04-14
 United States hCoV-19/USA/NY-Wadsworth-11000-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- A2480G C2558T G11083T C14805T C17010A C21575T G26144T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426039
 2020-03-05 2020-04-14
 United States hCoV-19/USA/NY-Wadsworth-11003-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426040
 2020-03-05 2020-04-14
 United States hCoV-19/USA/NY-Wadsworth-11017-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426420 MT344948
 2020-03-05 2020-04-15
 United States SARS-CoV-2/human/USA/HI_4970/2020
 C241T C3037T C14408T A20268G A23403G C28854T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426426 MT344954
 2020-03-05 2020-04-15
 United States SARS-CoV-2/human/USA/MN_0100/2020
 A6035G C8782T A16467G C17747T A17858G C18060T C23185T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426512
 2020-03-05 2020-04-17
 United States hCoV-19/USA/AZ-TG268893/2020
 C4633T C8782T C14645T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_427299
 2020-03-05 2020-04-18
 Brazil hCoV-19/Brazil/RJ-352/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C8782T T9477A C14805T A21694G G25979T T28144C C28657T C28863T GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_429138
 2020-03-05 2020-04-23
 Sweden hCoV-19/Sweden/20-50087/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_430117 MT627626
 2020-03-05 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S263/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_430119 MT627637
 2020-03-05 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S265/2020
 C8782T C17747T A17858G C18060T G22984A T27384C T28144C

EPI_ISL_430122 MT627632
 2020-03-05 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S268/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_430146 MT627612
 2020-03-05 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S292/2020
 C8782T C17747T A17858G C18060T G26466A T28144C

EPI_ISL_430152 MT627623
 2020-03-05 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S298/2020
 C8782T C16750T C17747T A17858G C18060T T28144C

EPI_ISL_430439
 2020-03-05 2020-04-27
 Malaysia hCoV-19/Malaysia/IMR_WC1177/2020
 A1GGGCAGACGGGCGA A4T C11752T C19170A A29877G AA29879TG A29882T AAAAAAAAAAAAAAAAAA29886G

EPI_ISL_430440
 2020-03-05 2020-04-27
 Malaysia hCoV-19/Malaysia/IMR_WC1170/2020
 A1TTTTTTACTATGGTTGAAAAGATGTGCCCTACTGAACAAAAATCACACATGAAGATTTACTTTGTGA -A3CAG AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_435601
 2020-03-05 2020-05-05
 United States hCoV-19/USA/CA-SCCPHD-UC122/2020
 

EPI_ISL_436048 MT434782
 2020-03-05 2020-05-05
 United States SARS-CoV-2/human/USA/NY-CDC-SURV0076NYC/2020
 C241T C1059T C3037T C11916T C13536T C14408T C18998T A23403G G25563T A28989W G29540A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_437204
 2020-03-05 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0002/2020
 C241T C3037T C14408T A23403G C27046T C28344A GGG28881AAC

EPI_ISL_437894 MT459897
 2020-03-05 2020-05-11
 Greece SARS-CoV-2/human/GRC/234_31670/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T C18877T A23403G G25563T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_437929
 2020-03-05 2020-05-12
 Austria hCoV-19/Austria/CeMM0041/2020
 C241T C3037T C14408T T22521K A23403G AAAAAAAAAAAAAAAAAAA29885-

EPI_ISL_438007
 2020-03-05 2020-05-12
 Austria hCoV-19/Austria/CeMM0161/2020
 C241T C3037T G12832A C14408T A23403G G24102C C26894T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_438008
 2020-03-05 2020-05-12
 Austria hCoV-19/Austria/CeMM0162/2020
 C241T C3037T G12832A C14408T A23403G G24102C GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_443313
 2020-03-05 2020-05-12
 France hCoV-19/France/B6041/2020
 C241T C3037T C14408T C22120T A23403G C23575T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_445246
 2020-03-05 2020-05-15
 Chile hCoV-19/Chile/Puerto_Montt_1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G GATTTT29843A AT29850GA TC29856AT TAGG29859- G29864A G29868C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_447846 MT472623
 2020-03-05 2020-05-14
 United States SARS-CoV-2/human/USA/VT-CDC-0303/2020
 C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_451934
 2020-03-05 2020-05-25
 Croatia hCoV-19/Croatia/ZG-297-20/2020
 ATTAAAGGTT1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T G28209T GGG28881AAC

EPI_ISL_452134 MT512417
 2020-03-05 2020-05-26
 United States SARS-CoV-2/human/USA/IL-CDC-1732/2020
 C8782Y G13571K C16694M G16912K C17747T A17858G G18002K C18060T T28144C G28631R AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_452352
 2020-03-05 2020-05-27
 China hCoV-19/Beijing/DT-travelIT01/2020
 A12C C241T C3037T T6552G C14408T C18568T A23118C A23403G

EPI_ISL_452751
 2020-03-05 2020-05-27
 Spain hCoV-19/Spain/COV000717/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T

EPI_ISL_452754
 2020-03-05 2020-05-27
 Spain hCoV-19/Spain/COV000714/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T C29870A

EPI_ISL_452759
 2020-03-05 2020-05-27
 Spain hCoV-19/Spain/COV000707/2020
 C8782T T9477A C14805T G25785T G25979T T28144C C28657T C28863T

EPI_ISL_454451
 2020-03-05 2020-05-28
 Sweden hCoV-19/Sweden/20-08076/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_454452
 2020-03-05 2020-05-28
 Sweden hCoV-19/Sweden/20-08077/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_454453
 2020-03-05 2020-05-28
 Sweden hCoV-19/Sweden/20-08078/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_454454
 2020-03-05 2020-05-28
 Sweden hCoV-19/Sweden/20-08079/2020
 C241T C3037T C14408T A20608G A23403G C27046T GGG28881AAC

EPI_ISL_454455
 2020-03-05 2020-05-28
 Sweden hCoV-19/Sweden/20-08081/2020
 C241T C3037T C14408T A20608G A23403G C27046T GGG28881AAC

EPI_ISL_454456
 2020-03-05 2020-05-28
 Sweden hCoV-19/Sweden/20-08082/2020
 C241T C3037T C14408T A23403G

EPI_ISL_454457
 2020-03-05 2020-05-28
 Sweden hCoV-19/Sweden/20-08083/2020
 C241T C3037T C14408T G22583A A23403G

EPI_ISL_454458
 2020-03-05 2020-05-28
 Sweden hCoV-19/Sweden/20-08084/2020
 C241T C3037T C5730T C14408T A23403G GGG28881AAC

EPI_ISL_454459
 2020-03-05 2020-05-28
 Sweden hCoV-19/Sweden/20-08085/2020
 C241T C3037T A13947T C14408T A23403G GGG28881AAC

EPI_ISL_454460
 2020-03-05 2020-05-28
 Sweden hCoV-19/Sweden/20-08086/2020
 C241T C3037T A13947T C14408T A23403G GGG28881AAC

EPI_ISL_454461
 2020-03-05 2020-05-28
 Sweden hCoV-19/Sweden/20-08088/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_454462
 2020-03-05 2020-05-28
 Sweden hCoV-19/Sweden/20-08090/2020
 C241T C3037T C9857T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_454592
 2020-03-05 2020-05-28
 Croatia hCoV-19/Croatia/297_Varazdin/2020
 ATTAAA1- C241T C3037T C4002T G10097A TA12494WM AC12498WM C13536T C14408T A23403G G25593C TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_454756
 2020-03-05 2020-05-29
 Netherlands hCoV-19/Netherlands/Utrecht_10007/2020
 ATTA1- T514C ATG1605- C18647T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_455316
 2020-03-05 2020-05-29
 Spain hCoV-19/Spain/Andalucia201613/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T

EPI_ISL_455317
 2020-03-05 2020-05-29
 Spain hCoV-19/Spain/Andalucia201614/2020
 A436C G7160T C8782T T9477A A19673G T19843C T28144C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_455318
 2020-03-05 2020-05-29
 Spain hCoV-19/Spain/Andalucia201615/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C14805T C21342G C23707T T27384C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_455319
 2020-03-05 2020-05-29
 Spain hCoV-19/Spain/Andalucia201616/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- ATG1605- A21187C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_455320
 2020-03-05 2020-05-29
 Spain hCoV-19/Spain/Andalucia201620/2020
 C8782T T9477A C12513T C14805T T23590A A25765T C26681T T28144C C28657T C28863T

EPI_ISL_455321
 2020-03-05 2020-05-29
 Spain hCoV-19/Spain/Andalucia201622/2020
 C2143T T3981C A3985G C8782T T9477A C14805T G25979T T28144C C28657T

EPI_ISL_455322
 2020-03-05 2020-05-29
 Spain hCoV-19/Spain/Andalucia201623/2020
 C1419T C8782T T9477A C14805T T21657A A22110T T28144C C28657T C28863T

EPI_ISL_455325
 2020-03-05 2020-05-29
 Spain hCoV-19/Spain/Canarias201811/2020
 A391G C635T C1875T C3792T T4579A C8782T T9477A A9673T C9687T C14805T A21620T C28657T T29760C ATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29850-

EPI_ISL_455340
 2020-03-05 2020-05-29
 Spain hCoV-19/Spain/LaRioja201568/2020
 C8782T T9477A C14805T T28144C C28657T C28863T TATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29832-

EPI_ISL_455354
 2020-03-05 2020-05-29
 Spain hCoV-19/Spain/PaisVasco201920/2020
 C241T C8782T C8874T C14408T A23403G G29734C ATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29850-

EPI_ISL_455409
 2020-03-05 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM2-273/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- T13243C T14684C CC18109-T

EPI_ISL_455444
 2020-03-05 2020-05-29
 Poland hCoV-19/Poland/PL_P31/2020
 C241T C3037T C14408T A23403G

EPI_ISL_455858
 2020-03-05 2020-06-01
 Sweden hCoV-19/Sweden/20-50148/2020
 C241T C3037T C14408T C23393T A23403G

EPI_ISL_455860
 2020-03-05 2020-06-01
 Sweden hCoV-19/Sweden/20-50150/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_455861
 2020-03-05 2020-06-01
 Sweden hCoV-19/Sweden/20-50154/2020
 C241T C3037T C14408T G22583A A23403G

EPI_ISL_455863
 2020-03-05 2020-06-01
 Sweden hCoV-19/Sweden/20-50194/2020
 C241T C3037T C14408T G22583A A23403G

EPI_ISL_455864
 2020-03-05 2020-06-01
 Sweden hCoV-19/Sweden/20-50196/2020
 C241T C3037T C14408T A23403G C27046T G27506T GGG28881AAC

EPI_ISL_455867
 2020-03-05 2020-06-01
 Sweden hCoV-19/Sweden/20-50201/2020
 C241T C3037T C14408T A23403G C23575T G23587C

EPI_ISL_455868
 2020-03-05 2020-06-01
 Sweden hCoV-19/Sweden/20-50202/2020
 C241T C3037T C14408T G17658T G22583A A23403G T24152C

EPI_ISL_455958
 2020-03-05 2020-06-01
 Belgium hCoV-19/Belgium/ULG-10170/2020
 C241T C3037T C5175T T11638C C14408T A23403G GGG28881AAC C29708T G29736T

EPI_ISL_464417
 2020-03-05 2020-06-11
 United Kingdom hCoV-19/England/201080001/2020
 C241T C3037T C14408T A23403G GGG28881AAC G29256T

EPI_ISL_464423
 2020-03-05 2020-06-11
 United Kingdom hCoV-19/England/201080010/2020
 C241T T586W C3037T C14408T A23403G C25350T

EPI_ISL_464427
 2020-03-05 2020-06-11
 United Kingdom hCoV-19/England/201080017/2020
 G11083T C14805T G22464T C23707T G26144T T27384C

EPI_ISL_464432
 2020-03-05 2020-06-11
 United Kingdom hCoV-19/England/201080027/2020
 A2480G C2558T G11083T C14805T T21072C G26144T

EPI_ISL_464447
 2020-03-05 2020-06-11
 United Kingdom hCoV-19/England/201080056/2020
 C241T C3037T G3994T C14408T G15910T TTA21991- A23403G

EPI_ISL_464449
 2020-03-05 2020-06-11
 United Kingdom hCoV-19/England/201080059/2020
 C241T C3037T C14408T A23403G

EPI_ISL_464467
 2020-03-05 2020-06-11
 United Kingdom hCoV-19/England/201080091/2020
 A39R C241T C3037T C14408T T17835C A23403G

EPI_ISL_464473
 2020-03-05 2020-06-11
 United Kingdom hCoV-19/England/201080164/2020
 T514C ATG1605- A28973T

EPI_ISL_464479
 2020-03-05 2020-06-11
 United Kingdom hCoV-19/England/201081250/2020
 G1397A C2511T G11083T T17659G C23625T C28253Y T28688Y C28849G G29742T

EPI_ISL_464480
 2020-03-05 2020-06-11
 United Kingdom hCoV-19/England/20108125404/2020
 G1397A G11083T T17659G C23625T G28242K T28688C C28849G G29742T

EPI_ISL_464545
 2020-03-05 2020-06-11
 United Kingdom hCoV-19/England/20109019704/2020
 A2480G C2558T G11083T C14805T G26144T

EPI_ISL_466927 LR824035
 2020-03-05 2020-06-12
 Switzerland 100002
 C241T C835Y C3037T C3096Y G3243R AA3361WW C3597Y A5257W C5497Y A6105W T7302Y T11182Y G12838R C14408T C15324T C15328Y T16614Y A19437W A19767M G20291K G20730R AC20761MY T20765Y GA20781KW G21508R G21604S T21628Y C22347M G22644K C22735Y A23403G C23435Y C24213Y A25591R A25986R T26094Y C26735Y C27002Y A27062M C27219Y G28727S C29750M C29754M C29762M C29769M T29772K A29796R

EPI_ISL_469079
 2020-03-05 2020-06-17
 Sweden hCoV-19/Sweden/20-08089/2020
 C241T C3037T G5572T C14408T A23403G A25024G C27046T GGG28881AAC

EPI_ISL_475843
 2020-03-05 2020-06-25
 Austria hCoV-19/Austria/CeMM0413/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1397A G11083T G14653A C18252T T28688C G29742T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475853
 2020-03-05 2020-06-25
 Austria hCoV-19/Austria/CeMM0425/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A T25304C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475866
 2020-03-05 2020-06-25
 Austria hCoV-19/Austria/CeMM0449/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15277T C15324T A16734G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476797
 2020-03-05 2020-06-26
 Singapore hCoV-19/Singapore/28nan/2020
 CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_479807
 2020-03-05 2020-07-01
 Japan hCoV-19/Japan/PG-0040/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTT1- C8782T G16381A T17877C T28144C G28878A G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479815
 2020-03-05 2020-07-01
 Japan hCoV-19/Japan/PG-0052/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C8782T G16381A T17877C T28144C G28878A G29742A AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_479836
 2020-03-05 2020-07-01
 Japan hCoV-19/Japan/PG-0089/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C11752T T18144A C19170A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479886
 2020-03-05 2020-07-01
 Japan hCoV-19/Japan/PG-0178/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- ATG1605- C17898T A29596G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_479887
 2020-03-05 2020-07-01
 Japan hCoV-19/Japan/PG-0179/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- ATG1605- C17898T TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_479888
 2020-03-05 2020-07-01
 Japan hCoV-19/Japan/PG-0180/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T G16381A T17877C T28144C G28878A G29742A AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_479925
 2020-03-05 2020-07-01
 Japan hCoV-19/Japan/PG-0229/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C8782T T9490C G16381A T17877C T28144C G28878A G29742A ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480034
 2020-03-05 2020-07-01
 Japan hCoV-19/Japan/PG-0364/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACT1- C8782T G16381A T17877C C26139T T28144C G28878A G29742A AATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29818-

EPI_ISL_480058
 2020-03-05 2020-07-01
 Japan hCoV-19/Japan/PG-0389/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- G3179A C6982T C8782T T28144C ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480059
 2020-03-05 2020-07-01
 Japan hCoV-19/Japan/PG-0390/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- G3179A C6982T C8782T T28144C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_480060
 2020-03-05 2020-07-01
 Japan hCoV-19/Japan/PG-0391/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- G3179A C6982T C8782T T28144C TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_482468
 2020-03-05 2020-07-03
 Peru hCoV-19/Peru/01/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTG1- C241T C3037T C14408T C15277T A21917G A23403G A26530G TTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29680-

EPI_ISL_482469
 2020-03-05 2020-07-03
 Canada hCoV-19/Canada/NS_40/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10851T C14408T A23403G G25563T ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_482575
 2020-03-05 2020-07-04
 China hCoV-19/Hangzhou/HZCDC6111/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_488337
 2020-03-05 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F671/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G C9223T G11083T C14805T T17247C G26144T C26735T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488831
 2020-03-05 2020-07-14
 United Kingdom hCoV-19/England/NORT-28115D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492987
 2020-03-05 2020-07-20
 Italy hCoV-19/Italy/NegrarVR_8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C3037T C13620T C14408T A23403G GGG28881AAC C29870A

EPI_ISL_498002
 2020-03-05 2020-07-26
 South Korea hCoV-19/Korea/KCDC2101/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- G11083T G13564T C14805T G15708T G26144T CTTAGGAGAATG29857-

EPI_ISL_500086
 2020-03-05 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A4D70/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C3373A C14408T A23403G GGG28881AAC

EPI_ISL_500091
 2020-03-05 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A4E04/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C2558T G11083T C14805T G26144T

EPI_ISL_500099
 2020-03-05 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A4FB6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_500101
 2020-03-05 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A5058/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC AAAAAAAAA29895-

EPI_ISL_500112
 2020-03-05 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A5207/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G C25350T

EPI_ISL_500391
 2020-03-05 2020-07-28
 Spain hCoV-19/Spain/COV005957/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_523199
 2020-03-05 2020-08-26
 Netherlands hCoV-19/Netherlands/GE-EMC-217/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C11109T C14408T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_524485
 2020-03-05 2020-08-28
 Switzerland hCoV-19/Switzerland/ZH-1000479112/2020
 C241T C3037T G5008T C14408T C19170T G19509A A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_525576
 2020-03-05 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-10713-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_525577
 2020-03-05 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-10715-01/2020/P1
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_527931
 2020-03-05 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42177239/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_527932
 2020-03-05 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42177430/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T C15324T A23403G TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_527933
 2020-03-05 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42177434/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_527934
 2020-03-05 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42177585/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_530030
 2020-03-05 2020-09-10
 Spain hCoV-19/Spain/MD-LP103/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G G25273C C25585T ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_537410
 2020-03-05 2020-09-16
 Spain hCoV-19/Spain/RI-CSIC-99005867/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C8782T T9477A C14805T G24386K G25979T T28144C C28657T C28863T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_539498
 2020-03-05 2020-09-18
 Spain hCoV-19/Spain/AN-ISCIII-201618/2020
 ATG1605- C5318T TTGAATATG22065- A22116T A22155G

EPI_ISL_539501
 2020-03-05 2020-09-18
 Spain hCoV-19/Spain/AR-ISCIII-201587/2020
 G11071C C11074T G11083T C24382T G26144T

EPI_ISL_539502
 2020-03-05 2020-09-18
 Spain hCoV-19/Spain/AR-ISCIII-201588/2020
 C8782T G26144T

EPI_ISL_547525
 2020-03-05 2020-09-24
 Netherlands hCoV-19/Netherlands/UT-RIVM-10080/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C T1606C C6078T C18647T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547559
 2020-03-05 2020-09-24
 Netherlands hCoV-19/Netherlands/ZH-RIVM-10076/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A26530G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560620
 2020-03-05 2020-09-29
 France hCoV-19/France/GE8767/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT325566
 2020-03-05 2020-04-10
 United States SARS-CoV-2/human/USA/FL_9590/2020
 G11083T C14805T A15779C T17247C G26144T AAAAAAAAAAAAAAAAAAAAA29883-

MT325567
 2020-03-05 2020-04-10
 United States SARS-CoV-2/human/USA/FL_9655/2020
 T490A C3177T C8782T T18736C G19684T C24034T T26729C C27635Y G28077C T28144C A29700G AAAAAAAAAAAAAAAAAAAAA29883-

MT325570
 2020-03-05 2020-04-10
 United States SARS-CoV-2/human/USA/GA_1847/2020
 T490A C3177T C8782T T18736C C24034T T26729C G28077C T28144C A29700G AAAAAAAAAAAAAAAAAAAAA29883-

MT325582
 2020-03-05 2020-04-10
 United States SARS-CoV-2/human/USA/MA_0020/2020
 C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MT325592
 2020-03-05 2020-04-10
 United States SARS-CoV-2/human/USA/NE_6605/2020
 G1440A G2891A C12651T AAAAAAAAAAAAAAAAAAAAA29883-

MT325599
 2020-03-05 2020-04-10
 United States SARS-CoV-2/human/USA/PA_1802/2020
 C241T C3037T C14408T A20268G A23403G G29734C AAAAAAAAAAAAAAAAAAAAA29883-

MT325600
 2020-03-05 2020-04-10
 United States SARS-CoV-2/human/USA/PA_1881/2020
 C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MT325605
 2020-03-05 2020-04-10
 United States SARS-CoV-2/human/USA/RI_0702/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MT325609
 2020-03-05 2020-04-10
 United States SARS-CoV-2/human/USA/UT_8199/2020
 C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

MT325623
 2020-03-05 2020-04-10
 United States SARS-CoV-2/human/USA/SC_3520/2020
 T490A C3177T C8782T T18736C C24034T T26729C G28077C T28144C A29700G AAAAAAAAAAAAAAAAAAAAA29883-

MT325626
 2020-03-05 2020-04-10
 United States SARS-CoV-2/human/USA/SC_3572/2020
 C241T C3037T G4255T C14408T A23403G A26530G AAAAAAAAAAAAAAAAAAAAA29883-

MT325629
 2020-03-05 2020-04-10
 United States SARS-CoV-2/human/USA/MA_8932/2020
 C241T C2416T C3037T C14408T A23403G G25563T G26233T AAAAAAAAAAAAAAAAAAAAA29883-

MT325630
 2020-03-05 2020-04-10
 United States SARS-CoV-2/human/USA/MA_8933/2020
 C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MT325631
 2020-03-05 2020-04-10
 United States SARS-CoV-2/human/USA/MA_9703/2020
 C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MT325634
 2020-03-05 2020-04-10
 United States SARS-CoV-2/human/USA/MA_1355/2020
 C14805T T17247C G26144T AAAAAAAAAAAAAAAAAAAAA29883-

MT873080
 2020-03-05 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00003/2020
 ATTAAA1- G11083T C14805T T17247C G26144T AAAAAAAAAAAAAA29890-

EPI_ISL_414451 LR878275
 2020-03-06 2020-03-12
 Netherlands hCoV-19/Netherlands/NoordBrabant_6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- G11083T C14805T T17247C T23926C G26144T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_414452 LR878295
 2020-03-06 2020-03-12
 Netherlands hCoV-19/Netherlands/NoordBrabant_12/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- T514C ATG1605- C4763T G29392T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_414457 LR878293
 2020-03-06 2020-03-12
 Netherlands hCoV-19/Netherlands/NoordBrabant_17/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T C7063T C14408T A23403G G28739T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_414468 LR878272
 2020-03-06 2020-03-12
 Netherlands hCoV-19/Netherlands/ZuidHolland_8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- G11083T C14805T G15535T T17247C G26144T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_414470 LR878267
 2020-03-06 2020-03-12
 Netherlands hCoV-19/Netherlands/ZuidHolland_13/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T C14408T A23403G GGG28881AAC C29362T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_414558 LR878287
 2020-03-06 2020-03-13
 Netherlands hCoV-19/Netherlands/ZuidHolland_16/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G61T G1397A G3145T G11083T C20235A T20787C T22042C T28688C T28835C G29742T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_414591
 2020-03-06 2020-03-14
 United States hCoV-19/USA/WA-UW22/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAAC19- C37T C40T G1397A G11083T T28688C G29742T AAAAAAAAAA29894-

EPI_ISL_414592
 2020-03-06 2020-03-14
 United States hCoV-19/USA/WA-UW23/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- A35W C8782T C17747T A17858G C18060T T28144C AA29902-

EPI_ISL_415435
 2020-03-06 2020-03-17
 United Kingdom hCoV-19/Wales/PHW06/2020
 ATTAAAGGTTTA1- C241T C3037T C6990T C14408T TATGTAAATAAACATGCATTCCACACACCAGCTTTTGATAAAAGTGCTTTTGTTAATTTAAAACAATTACCATTTTTCTATTACTCTGACAGTCCATGTGAGTCTCATGGAAAACAAGTAGTGTCAGATATAGATTATGTACCACTAAAGTCTGCTACGTGTATAACACGTTGCAATTTAGGTGGTGCTGTCTGTAGACATCATGCTAATGAGTACAGATTGTATCTCGATGCTTATAACATGATGATCTCAGC19297- A23403G TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_415658
 2020-03-06 2020-03-19
 Chile hCoV-19/Chile/Santiago_op2d1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_415705
 2020-03-06 2020-03-19
 Switzerland hCoV-19/Switzerland/GE4135/2020
 ATTAAAGGTTT1- C241T C3037T C14408T C15324T A23403G

EPI_ISL_415706
 2020-03-06 2020-03-19
 Switzerland hCoV-19/Switzerland/GE06207/2020
 A4T C241T C3037T C14408T C15324T A23403G

EPI_ISL_416430
 2020-03-06 2020-03-21
 Vietnam hCoV-19/Vietnam/CM295/2020
 ATTAAAGGTTTAT1- C241T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_416431
 2020-03-06 2020-03-21
 Vietnam hCoV-19/Vietnam/CM296/2020
 ATTAAAGGTTTATAC1- C241T C3037T C14408T A23403G GGG28881AAC A29879C A29885T

EPI_ISL_416454 MT252822
 2020-03-06 2020-03-21
 United States SARS-CoV-2/human/USA/WA-UW37/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACT1- T150C T153G C8782T C17747T A17858G C18060T T28144C C29870A A29903G

EPI_ISL_416509
 2020-03-06 2020-03-22
 France hCoV-19/France/B2344/2020
 C241T C1059T A1547G C3037T C14408T G21920A A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_416510
 2020-03-06 2020-03-22
 France hCoV-19/France/B2346/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_416750
 2020-03-06 2020-03-23
 France hCoV-19/France/Lyon_683/2020
 C241T C3037T C14408T C15324T C21552T A23403G C24990T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_416753
 2020-03-06 2020-03-23
 France hCoV-19/France/Lyon_06464 /2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_416754
 2020-03-06 2020-03-23
 France hCoV-19/France/Lyon_06487/2020
 C241T C3037T C14408T C15324T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_416756
 2020-03-06 2020-03-23
 France hCoV-19/France/Lyon_06531/2020
 C241T C3037T C14408T C15324T A15860G A23403G AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_417119 MT627310
 2020-03-06 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S66/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417125 MT627289
 2020-03-06 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S72/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417258
 2020-03-06 2020-03-25
 United Kingdom hCoV-19/England/20108034006/2020
 C241T C3037T C14408T C19170T G19509A A23403G GGG28881AAC

EPI_ISL_417272
 2020-03-06 2020-03-25
 United Kingdom hCoV-19/England/20109052006/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_417283
 2020-03-06 2020-03-25
 United Kingdom hCoV-19/England/20109058906/2020
 T514C ATG1605-

EPI_ISL_417285
 2020-03-06 2020-03-25
 United Kingdom hCoV-19/England/20109093606/2020
 T931C ATG1605- T12418C G20024A G26416C G29425A

EPI_ISL_417289
 2020-03-06 2020-03-25
 United Kingdom hCoV-19/England/20109094006/2020
 A1515G C9223T G11083T C14805T T17247C G26144T

EPI_ISL_417297
 2020-03-06 2020-03-25
 United Kingdom hCoV-19/England/20109099006/2020
 C241T C3037T C14408T A23403G GGG28881AAC G29256T

EPI_ISL_417301
 2020-03-06 2020-03-25
 United Kingdom hCoV-19/England/20110000606/2020
 C241T C3037T C14408T A23403G G24077T

EPI_ISL_417335
 2020-03-06 2020-03-25
 France hCoV-19/France/Lyon_06573/2020
 ATG1605- C3787T C12621T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_417336
 2020-03-06 2020-03-25
 France hCoV-19/France/Lyon_0668/2020
 C241T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_417385
 2020-03-06 2020-03-25
 Australia hCoV-19/Australia/NSW19/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1397A A10912G G11083T T22213C T28688C C29563T G29742T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417387
 2020-03-06 2020-03-25
 Australia hCoV-19/Australia/NSW24/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C884T G1397A G8653T G11083T C24904T T28688C G29742T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417425
 2020-03-06 2020-03-25
 Belgium hCoV-19/Belgium/VBK-03061/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C6628T C14408T A23403G GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_417684
 2020-03-06 2020-03-27
 Iceland hCoV-19/Iceland/54/2020
 C241T C3037T T3862A C14408T A23403G C27046T C28344A GGG28881AAC

EPI_ISL_417692
 2020-03-06 2020-03-27
 Iceland hCoV-19/Iceland/57/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_417731
 2020-03-06 2020-03-27
 Iceland hCoV-19/Iceland/61/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_417757
 2020-03-06 2020-03-27
 Iceland hCoV-19/Iceland/62/2020
 C241T C3037T C14408T A23403G C24054T A25958G C27046T GGG28881AAC

EPI_ISL_417852
 2020-03-06 2020-03-27
 Iceland hCoV-19/Iceland/56/2020
 C241T C3037T C14408T A23403G A25958G C27046T GGG28881AAC

EPI_ISL_417853
 2020-03-06 2020-03-27
 Iceland hCoV-19/Iceland/59/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_417877
 2020-03-06 2020-03-27
 Slovakia hCoV-19/Slovakia/SK-BMC1/2020
 C241T C884T C3037T C14408T A23403G A26530G

EPI_ISL_417879
 2020-03-06 2020-03-27
 Slovakia hCoV-19/Slovakia/SK-BMC5/2020
 C241T C2416T C3037T G8371T C14408T A23403G G25563T

EPI_ISL_418012
 2020-03-06 2020-03-28
 Portugal hCoV-19/Portugal/PT0027/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G C29144T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_418516
 2020-03-06 2020-03-30
 Ireland hCoV-19/Ireland/21023/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC C29095T

EPI_ISL_418548
 2020-03-06 2020-03-30
 Ireland hCoV-19/Ireland/21145/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_418794
 2020-03-06 2020-03-31
 Belgium hCoV-19/Belgium/VHRA-030644/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2893G C3037T C14408T A20276G A23403G A26530G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_418795
 2020-03-06 2020-03-31
 Belgium hCoV-19/Belgium/NKR-030645/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_418805
 2020-03-06 2020-03-31
 Belgium hCoV-19/Belgium/VPE-030650/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G9388T C11020T C18501T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_418818
 2020-03-06 2020-03-31
 Canada hCoV-19/Canada/BC_1318414/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_418981
 2020-03-06 2020-03-31
 Belgium hCoV-19/Belgium/VRAR-030643/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A8072G C14408T T15504G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_419658
 2020-03-06 2020-04-03
 Austria hCoV-19/Austria/CeMM0005/2020
 T10721K G11083T C14805T T17247C G26144T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_420105
 2020-03-06 2020-04-05
 Singapore hCoV-19/Singapore/28/2020
 ATTAAAGGTTTAT1- TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_420294
 2020-03-06 2020-04-06
 Slovenia hCoV-19/Slovenia/4584/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C3037T C14408T TTA21991- A23403G -29904AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

EPI_ISL_420315
 2020-03-06 2020-04-06
 Belgium hCoV-19/Belgium/RYR-030649/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1487A C2094T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420321
 2020-03-06 2020-04-06
 Belgium hCoV-19/Belgium/WWM-030665/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420326
 2020-03-06 2020-04-06
 Belgium hCoV-19/Belgium/AKM-030670/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A13947T C14408T C21676T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420328
 2020-03-06 2020-04-06
 Belgium hCoV-19/Belgium/VGA-030672/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4396G C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420332
 2020-03-06 2020-04-06
 Belgium hCoV-19/Belgium/WAM-030676/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420333
 2020-03-06 2020-04-06
 Belgium hCoV-19/Belgium/RS-030677/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1487A C3037T C14408T A23403G GGG28881AAC G29690T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420335
 2020-03-06 2020-04-06
 Belgium hCoV-19/Belgium/CD-030679/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420336
 2020-03-06 2020-04-06
 Belgium hCoV-19/Belgium/PA-030680/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420340
 2020-03-06 2020-04-06
 Belgium hCoV-19/Belgium/MJP-030684/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1487A C2094T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420341
 2020-03-06 2020-04-06
 Belgium hCoV-19/Belgium/LM-030685/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420342
 2020-03-06 2020-04-06
 Belgium hCoV-19/Belgium/ECC-030686/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A26530G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420343
 2020-03-06 2020-04-06
 Belgium hCoV-19/Belgium/BM-030687/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4320T C14408T A23403G G25563T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420345
 2020-03-06 2020-04-06
 Belgium hCoV-19/Belgium/MC-030689/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420347
 2020-03-06 2020-04-06
 Belgium hCoV-19/Belgium/DA-030691/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3130T C14408T A23403G A26530G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420350
 2020-03-06 2020-04-06
 Belgium hCoV-19/Belgium/BDW-030694/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420351
 2020-03-06 2020-04-06
 Belgium hCoV-19/Belgium/VMC-030695/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1376T C3037T A8072G C14408T C18131T A23403G GGG28881AAC C29774T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420355
 2020-03-06 2020-04-06
 Belgium hCoV-19/Belgium/RR-030699/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A13947T C14408T G19525T C21676T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420356
 2020-03-06 2020-04-06
 Belgium hCoV-19/Belgium/MJP-0306100/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420441
 2020-03-06 2020-04-06
 Belgium hCoV-19/Belgium/RA-030664/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C5654T C14408T A23403G C24034T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420446
 2020-03-06 2020-04-06
 Belgium hCoV-19/Belgium/DAL-030650/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420449
 2020-03-06 2020-04-06
 Belgium hCoV-19/Belgium/VHC-030655/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T A4050C G4255T T13402G C14408T A23403G A26530G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_424841
 2020-03-06 2020-04-13
 United States hCoV-19/USA/SC_3569/2020
 T490A C3177T C8782T T18736C C24034T T26729C G28077C T28144C A29700G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424844
 2020-03-06 2020-04-13
 United States hCoV-19/USA/MA_3672/2020
 C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424845
 2020-03-06 2020-04-13
 United States hCoV-19/USA/MA_3699/2020
 C241T C2416T C3037T C3261M C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424846
 2020-03-06 2020-04-13
 United States hCoV-19/USA/MA_3878/2020
 C241T C2416T C3037T C14408T C17747Y A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424852
 2020-03-06 2020-04-13
 United States hCoV-19/USA/DC_0004/2020
 C8782T C16667Y C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424856
 2020-03-06 2020-04-13
 United States hCoV-19/USA/FL_9656/2020
 C8782T A16467G C17747T A17858G C18060T C23185T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424857
 2020-03-06 2020-04-13
 United States hCoV-19/USA/FL_1177/2020
 C241T C3037T C5467T C8389T C14408T A23403G T25245Y G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424867
 2020-03-06 2020-04-13
 United States hCoV-19/USA/KS_4126/2020
 C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424870
 2020-03-06 2020-04-13
 United States hCoV-19/USA/MO_4470/2020
 C241T C313T C3037T C13384T C14408T A23403G GGG28881AAC C29353T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424871
 2020-03-06 2020-04-13
 United States hCoV-19/USA/NC_6999/2020
 C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424876
 2020-03-06 2020-04-13
 United States hCoV-19/USA/NH_0029/2020
 C241T C3037T C5007T C14408T C14554T A23403G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424877
 2020-03-06 2020-04-13
 United States hCoV-19/USA/NH_0033/2020
 C241T C1059T C3037T T13006C C14408T A23403G G25563T C25688T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424886
 2020-03-06 2020-04-13
 United States hCoV-19/USA/PA_4405/2020
 C241T C3037T C14408T GG18505RK C18877T G19847A A23403G G25563T A28480T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424907
 2020-03-06 2020-04-13
 United States hCoV-19/USA/VA_6171/2020
 A361G C8782T G22468T T25559G T28144C G28878A G29742A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424914
 2020-03-06 2020-04-13
 United States hCoV-19/USA/MA_2652/2020
 C241T C2416T C3037T C14408T A23403G G25563T G26109T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424915
 2020-03-06 2020-04-13
 United States hCoV-19/USA/MA_3614/2020
 C241T C2416T C3037T C14408T A23403G G25563T G26233T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424916
 2020-03-06 2020-04-13
 United States hCoV-19/USA/MA_3616/2020
 C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424917
 2020-03-06 2020-04-13
 United States hCoV-19/USA/MA_3623/2020
 C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424918
 2020-03-06 2020-04-13
 United States hCoV-19/USA/MA_3626/2020
 C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424920
 2020-03-06 2020-04-13
 United States hCoV-19/USA/MA_3653/2020
 C241T C2416T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_425796
 2020-03-06 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR65/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_425797
 2020-03-06 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR66/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C20823T A23403G C23422T T23849C C29686T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425802
 2020-03-06 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR71/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425805
 2020-03-06 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR75/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425808
 2020-03-06 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR78/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C23422T T23849C C29686T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_426041
 2020-03-06 2020-04-14
 United States hCoV-19/USA/NY-Wadsworth-11180-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426042
 2020-03-06 2020-04-14
 United States hCoV-19/USA/NY-Wadsworth-11202-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C2416T C3037T C11651T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426043
 2020-03-06 2020-04-14
 United States hCoV-19/USA/NY-Wadsworth-11284-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426044
 2020-03-06 2020-04-14
 United States hCoV-19/USA/NY-Wadsworth-11291-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T A8882G C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426045
 2020-03-06 2020-04-14
 United States hCoV-19/USA/NY-Wadsworth-11344-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426046
 2020-03-06 2020-04-14
 United States hCoV-19/USA/NY-Wadsworth-11353-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426047
 2020-03-06 2020-04-14
 United States hCoV-19/USA/NY-Wadsworth-11354-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426048
 2020-03-06 2020-04-14
 United States hCoV-19/USA/NY-Wadsworth-11379-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426049
 2020-03-06 2020-04-14
 United States hCoV-19/USA/NY-Wadsworth-11380-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C4084T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426292
 2020-03-06 2020-04-15
 United States hCoV-19/USA/NY-Wadsworth-11207-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C2416T C3037T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_427293
 2020-03-06 2020-04-18
 Brazil hCoV-19/Brazil/BA-510/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C313T C3037T C14408T A23403G A26945T GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_429139
 2020-03-06 2020-04-23
 Sweden hCoV-19/Sweden/20-50123/2020
 C241T C3037T A12790G A13308G C13568T C14408T A23403G

EPI_ISL_429140
 2020-03-06 2020-04-23
 Sweden hCoV-19/Sweden/20-50125/2020
 

EPI_ISL_429141
 2020-03-06 2020-04-23
 Sweden hCoV-19/Sweden/20-50130/2020
 C241T C3037T A12790G C13568T C14408T A23403G

EPI_ISL_429142
 2020-03-06 2020-04-23
 Sweden hCoV-19/Sweden/20-50131/2020
 C241T C3037T A12790G C13568T C14408T A23403G

EPI_ISL_429143
 2020-03-06 2020-04-23
 Sweden hCoV-19/Sweden/20-50132/2020
 C241T C313T C3037T G4109A C14408T A23403G GGG28881AAC

EPI_ISL_429144
 2020-03-06 2020-04-23
 Sweden hCoV-19/Sweden/20-50133/2020
 C241T C3037T A12790G C13568T C14408T A23403G

EPI_ISL_429239
 2020-03-06 2020-04-23
 China hCoV-19/Yunnan/0306-466/2020
 ATG1431- G15910T

EPI_ISL_429346
 2020-03-06 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI117/2020
 C241T C3037T C14408T A23403G

EPI_ISL_430124 MT627614
 2020-03-06 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S270/2020
 C8782T T15927G C17747T A17858G C18060T C18401T C26936T T28144C

EPI_ISL_430129 MT627624
 2020-03-06 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S275/2020
 C8782T C16887T C17747T A17858G C18060T T28144C

EPI_ISL_430141 MT627633
 2020-03-06 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S287/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_430142 MT627629
 2020-03-06 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S288/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_430278 MT632619
 2020-03-06 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S240/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_430297
 2020-03-06 2020-04-26
 South Africa hCoV-19/South Africa/R02827/2020
 

EPI_ISL_430861
 2020-03-06 2020-04-28
 Sweden hCoV-19/Sweden/20-50129/2020
 C241T C3037T C10252T A12790G C13568T C14408T A23403G

EPI_ISL_435609
 2020-03-06 2020-05-05
 United States hCoV-19/USA/CA-SCCPHD-UC130/2020
 G29711T

EPI_ISL_437660
 2020-03-06 2020-05-11
 Denmark hCoV-19/Denmark/ALAB-SSI-245/2020
 C241T C3037T C14408T A23403G

EPI_ISL_438009
 2020-03-06 2020-05-12
 Italy hCoV-19/Austria/CeMM0163/2020
 C241T C3037T G3994T C14408T T22521K A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_438010
 2020-03-06 2020-05-12
 Austria hCoV-19/Austria/CeMM0165/2020
 C241T C3037T G12832A C14408T A23403G AG28877WS GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_438011
 2020-03-06 2020-05-12
 Austria hCoV-19/Austria/CeMM0166/2020
 C241T C3037T G12832A C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_438012
 2020-03-06 2020-05-12
 Austria hCoV-19/Austria/CeMM0167/2020
 C241T C3037T C9857T C14408T A23403G C27046T GGG28881AAC AAAA29900-

EPI_ISL_445245
 2020-03-06 2020-05-15
 Chile hCoV-19/Chile/Santiago_3/2020
 ATTAAAGGTTTA1- C8782T T9477A C14805T A15165R G25979T T28144C C28657T C28863T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_447841 MT472624
 2020-03-06 2020-05-14
 United States SARS-CoV-2/human/USA/FL-CDC-7619/2020
 C241T C683Y C3037T G4263K C4703Y A4725W C5184Y C5654Y A5891R C12123Y C14408T C14662Y C18877T A23403G G25563T G25696K G26596K C28475Y C28687Y AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_452353
 2020-03-06 2020-05-27
 China hCoV-19/Beijing/DT-travelIT02/2020
 C241T C3037T T8022G C14408T C18568T A23403G

EPI_ISL_452763
 2020-03-06 2020-05-27
 Spain hCoV-19/Spain/COV000703/2020
 C8782T T9477A C14805T C15654T G25979T T28144C C28657T C28863T

EPI_ISL_452773
 2020-03-06 2020-05-27
 Spain hCoV-19/Spain/COV000691/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T

EPI_ISL_454464
 2020-03-06 2020-05-28
 Sweden hCoV-19/Sweden/20-08092/2020
 C241T C3037T C14408T G22583A A23403G

EPI_ISL_454465
 2020-03-06 2020-05-28
 Sweden hCoV-19/Sweden/20-08093/2020
 C241T C843T C3037T C3743T C14408T T22153C G22583A A23403G

EPI_ISL_454466
 2020-03-06 2020-05-28
 Sweden hCoV-19/Sweden/20-08094/2020
 C241T C843T C3037T C14408T G22583A A23403G

EPI_ISL_454467
 2020-03-06 2020-05-28
 Sweden hCoV-19/Sweden/20-08095/2020
 C241T C3037T C14408T A23403G C24138T GGG28881AAC

EPI_ISL_454468
 2020-03-06 2020-05-28
 Sweden hCoV-19/Sweden/20-08096/2020
 C241T C3037T C3373A C14408T C23271T A23403G GGG28881AAC

EPI_ISL_454469
 2020-03-06 2020-05-28
 Sweden hCoV-19/Sweden/20-08098/2020
 C241T C3037T C14408T A23403G C24138T GGG28881AAC

EPI_ISL_454470
 2020-03-06 2020-05-28
 Sweden hCoV-19/Sweden/20-08099/2020
 C241T C3037T C10377T C14408T T23084C A23403G GGG28881AAC

EPI_ISL_454471
 2020-03-06 2020-05-28
 Sweden hCoV-19/Sweden/20-08100/2020
 C241T C3037T C9857T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_454475
 2020-03-06 2020-05-28
 Sweden hCoV-19/Sweden/20-08104/2020
 C241T C3037T C14408T A23403G

EPI_ISL_454757
 2020-03-06 2020-05-29
 Netherlands hCoV-19/Netherlands/NoordHolland_10008/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_454889
 2020-03-06 2020-05-29
 Sweden hCoV-19/Sweden/20-50208/2020
 C241T C3037T C14408T C19718T G22583A A23403G

EPI_ISL_455323
 2020-03-06 2020-05-29
 Spain hCoV-19/Spain/Andalucia201636/2020
 AT1- T5077C A5222G T6998G A7015T C8782T TG8827AT T10962G G11083T C14805T T19346C T19713A T19826C A23403G C23707T T27384C T27560C A29285G

EPI_ISL_455595
 2020-03-06 2020-06-01
 Australia hCoV-19/Australia/VPRL002/2020
 G11083T C14805T T17247C G26144T

EPI_ISL_455713
 2020-03-06 2020-06-01
 Vietnam hCoV-19/Vietnam/VNHN_148/2020
 A1- A4G C241T C3037T GT5513A C14408T A23403G T27794A GGG28881AAC AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_455865
 2020-03-06 2020-06-01
 Sweden hCoV-19/Sweden/20-50198/2020
 C241T C3037T C14408T A21875G A23403G C27046T GGG28881AAC T29834G

EPI_ISL_455866
 2020-03-06 2020-06-01
 Sweden hCoV-19/Sweden/20-50199/2020
 C241T C3037T C5730T C14408T A23403G GGG28881AAC

EPI_ISL_455869
 2020-03-06 2020-06-01
 Sweden hCoV-19/Sweden/20-50206/2020
 C241T C3037T C14408T G15850T G17658T G22583A A23403G

EPI_ISL_455870
 2020-03-06 2020-06-01
 Sweden hCoV-19/Sweden/20-50209/2020
 C241T C3037T C14408T G22583A A23403G

EPI_ISL_455871
 2020-03-06 2020-06-01
 Sweden hCoV-19/Sweden/20-50212/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_455872
 2020-03-06 2020-06-01
 Sweden hCoV-19/Sweden/20-50213/2020
 C241T C3037T C14408T C23393T A23403G

EPI_ISL_455875
 2020-03-06 2020-06-01
 Sweden hCoV-19/Sweden/20-50218/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_455876
 2020-03-06 2020-06-01
 Sweden hCoV-19/Sweden/20-50219/2020
 C241T C3037T C14408T A23403G

EPI_ISL_455907
 2020-03-06 2020-06-01
 Sweden hCoV-19/Sweden/20-50266/2020
 C241T C3037T C14408T A23403G A26530G

EPI_ISL_457700
 2020-03-06 2020-06-02
 Italy hCoV-19/Italy/2629/2020
 ATTAAA1- C241T C3037T C14408T A23403G GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_460333 MT520408
 2020-03-06 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00428/2020
 ATTAAA1- C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_464438
 2020-03-06 2020-06-11
 United Kingdom hCoV-19/England/201080039/2020
 C241T C3037T C14408T G20434T A22625R A23403G C25350T C26858T

EPI_ISL_464444
 2020-03-06 2020-06-11
 United Kingdom hCoV-19/England/201080053/2020
 C241T C3037T C14408T A23403G C27046T GGG28881RRS

EPI_ISL_464450
 2020-03-06 2020-06-11
 United Kingdom hCoV-19/England/201080061/2020
 C241T C3037T C14408T A23403G C25350T

EPI_ISL_464464
 2020-03-06 2020-06-11
 United Kingdom hCoV-19/England/201080081/2020
 G1397A G2246A C3817Y G11083T C27549Y T28688Y G29742T

EPI_ISL_464525
 2020-03-06 2020-06-11
 United Kingdom hCoV-19/England/20109007104/2020
 C241T C3037T C14408T T19839C A23403G GGG28881AAC

EPI_ISL_464549
 2020-03-06 2020-06-11
 United Kingdom hCoV-19/England/20109028804/2020
 C241T C2638Y C2940T C3037T C14408T A23403G

EPI_ISL_466936 LR824043
 2020-03-06 2020-06-12
 Switzerland 100011
 C241T G284R C3037T C12896T C14408T A19298W G19481R T22384Y T22516W A23403G G25952R

EPI_ISL_466937 LR824045
 2020-03-06 2020-06-12
 Switzerland 100012
 C241T C3037T C12896T C14408T A19410R C19512Y C22445M T22516W A23403G

EPI_ISL_469077
 2020-03-06 2020-06-17
 Sweden hCoV-19/Sweden/20-50216/2020
 C241T C3037T C14408T AGC19005- A23403G C27046T C28344A GGG28881AAC

EPI_ISL_475871
 2020-03-06 2020-06-25
 Austria hCoV-19/Austria/CeMM0460/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A A4284M C17518Y A20255R CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475877
 2020-03-06 2020-06-25
 Austria hCoV-19/Austria/CeMM0472/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G12832A C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475886
 2020-03-06 2020-06-25
 Austria hCoV-19/Austria/CeMM0484/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T19839C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476796
 2020-03-06 2020-06-26
 Singapore hCoV-19/Singapore/27nan/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A7479G G11083T C14805T T17247C C25572T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476903 MT827812
 2020-03-06 2020-06-27
 United States SARS-CoV-2/human/USA/WA-UW-114/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C8782T C17747T A17858G C18060T T28144C -29904AAAAAAAAAAA

EPI_ISL_479808
 2020-03-06 2020-07-01
 Japan hCoV-19/Japan/PG-0041/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C11752T C19170A AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_479816
 2020-03-06 2020-07-01
 Japan hCoV-19/Japan/PG-0053/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C11752T C19170A TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_479837
 2020-03-06 2020-07-01
 Japan hCoV-19/Japan/PG-0091/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C11752T C19170A G28857T TTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29822-

EPI_ISL_479838
 2020-03-06 2020-07-01
 Japan hCoV-19/Japan/PG-0092/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C11752T C19170A A29433G ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_479889
 2020-03-06 2020-07-01
 Japan hCoV-19/Japan/PG-0181/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C11752T G17721T TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_480061
 2020-03-06 2020-07-01
 Japan hCoV-19/Japan/PG-0392/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- G3179A C6982T C8782T G17523T T28144C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_480062
 2020-03-06 2020-07-01
 Japan hCoV-19/Japan/PG-0393/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- G3179A C6982T C8782T T28144C TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_480063
 2020-03-06 2020-07-01
 Japan hCoV-19/Japan/PG-0394/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- G3179A C6982T C8782T T28144C ATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29833-

EPI_ISL_480064
 2020-03-06 2020-07-01
 Japan hCoV-19/Japan/PG-0395/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- G3179A C6982T C8782T T28144C ATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29833-

EPI_ISL_482576
 2020-03-06 2020-07-04
 China hCoV-19/Hangzhou/HZCDC6224/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G9190T G11083T T14034C C14805T C16468T T17247C T19646C C24133T G26144T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_486663
 2020-03-06 2020-07-10
 Italy hCoV-19/Italy/Hsacco-7/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_487269
 2020-03-06 2020-07-14
 Peru hCoV-19/Peru/Peru002/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACA1- C241T C3037T C14408T C15277T A21917G A23403G A26530G ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_488253
 2020-03-06 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F617/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G24077T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488254
 2020-03-06 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F6BD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3955T C14408T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488262
 2020-03-06 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F6CC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488324
 2020-03-06 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F608/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3365T A6030G C14408T A23403G C25350T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488364
 2020-03-06 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F6AE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3955T C14408T A23403G C27046T GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_488829
 2020-03-06 2020-07-14
 United Kingdom hCoV-19/England/NORT-2811C6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G C9223T G11083T C14805T T17247C G17658R G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489836
 2020-03-06 2020-07-14
 Peru hCoV-19/Peru/Peru003/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAA1- C241T C3037T C14408T C15277T A21917G A23403G A26530G ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_489837
 2020-03-06 2020-07-14
 Peru hCoV-19/Peru/Peru004/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAA1- C241T C3037T C14408T C15277T A21917G A23403G A26530G ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_491431
 2020-03-06 2020-07-16
 Peru hCoV-19/Peru/INS-026/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAA1- C241T C813T C3037T C14408T A23403G G25429T ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_491438
 2020-03-06 2020-07-17
 Costa Rica hCoV-19/Costa Rica/INC-0026/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- C241T C3037T C14408T C21638T A23403G G26143A GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_497791
 2020-03-06 2020-07-25
 China hCoV-19/Hong Kong/HKU-200723-024/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1595A C7735T C9962T G11083T C11704T T13929C C14724T T21584G G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_500100
 2020-03-06 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A4FC5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G GGG28881AAC G29256T

EPI_ISL_500398
 2020-03-06 2020-07-28
 Spain hCoV-19/Spain/COV005964/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C8782T C8980T T9477A C14805T G25979T T28144C C28657T C28863T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_506955
 2020-03-06 2020-08-02
 South Korea hCoV-19/Korea/KCDC2161/2020
 G5572T C10808T G11083T C14805T C21575T G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_513314
 2020-03-06 2020-08-13
 Czech Republic hCoV-19/Czech Republic/NRL_1259/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25563T G26109T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_515293
 2020-03-06 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0004/2020
 ATTA1- G29711T

EPI_ISL_516634
 2020-03-06 2020-08-21
 Germany hCoV-19/Berlin/ChVir-D665-6/2020
 ATT1- C241T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_516645
 2020-03-06 2020-08-21
 Germany hCoV-19/Berlin/ChVir-D715-D799-17/2020
 ATTAAAGGTTTATAC1- C241T C3037T C14408T A23403G G29254T GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_523935
 2020-03-06 2020-08-27
 Germany hCoV-19/Germany/NW-64/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A T17803K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525536
 2020-03-06 2020-08-31
 France hCoV-19/France/ARA06391/2020
 ATT1- C241T C3037T C14408T C15324T A23403G AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_525579
 2020-03-06 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-11171-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T T22795C A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_525580
 2020-03-06 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-11244-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T G7320A C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_527739
 2020-03-06 2020-09-04
 Costa Rica hCoV-19/Costa Rica/INC-0071/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C1059T C3037T C14408T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_530031
 2020-03-06 2020-09-10
 Spain hCoV-19/Spain/MD-LP104-1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C9165T G9928T T21378C C26088T T28144C ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_538446
 2020-03-06 2020-09-17
 Singapore hCoV-19/Singapore/50nan/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A23359G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539503
 2020-03-06 2020-09-18
 Spain hCoV-19/Spain/AR-ISCIII-201596/2020
 T1483C C2836T G11071C G11083T G26144T

EPI_ISL_539504
 2020-03-06 2020-09-18
 Spain hCoV-19/Spain/AR-ISCIII-201597/2020
 T1483C C2836T G11071C G11083T G26144T

EPI_ISL_539509
 2020-03-06 2020-09-18
 Spain hCoV-19/Spain/AR-ISCIII-201687/2020
 G11071C G11083T C16466T G26144T

EPI_ISL_539510
 2020-03-06 2020-09-18
 Spain hCoV-19/Spain/AR-ISCIII-201688/2020
 T6549A A6551T G11071C G11083T C24382T G26144T

EPI_ISL_539532
 2020-03-06 2020-09-18
 Spain hCoV-19/Spain/CN-ISCIII-201810/2020
 A391G C635T A3245T T3360A C3792T T4579A A4860G A6063G C8645A T11134C C14805T T19616C T19843C G21280A A21487G T21539C T21656C C21678T T22917A A23013C A23880T A24500T T28144C C28657T C28863T T29760C ATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29850-

EPI_ISL_547524
 2020-03-06 2020-09-24
 Netherlands hCoV-19/Netherlands/UT-RIVM-10077/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T G16381A T28144C G28878A G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547526
 2020-03-06 2020-09-24
 Netherlands hCoV-19/Netherlands/UT-RIVM-10082/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4255T C14408T A23403G A26530G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566047
 2020-03-06 2020-10-01
 United Kingdom hCoV-19/England/201090128/2020
 ATTAAAGGTTTAT1- C241T C3037T C14408T C20031A A23403G C27046T GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

GWHAORP01000001
 2020-03-06 2020-09-11
 China SARS-CoV-2/human/CHN/Beijing-CP3/2020
 C241T C313T C3037T C14408T T16254C A23403G A25497G

GWHAORQ01000001
 2020-03-06 2020-09-11
 China SARS-CoV-2/human/CHN/Beijing-CP4/2020
 C241T C1059T C3037T A23403G

MT325563
 2020-03-06 2020-04-10
 United States SARS-CoV-2/human/USA/DC_0004/2020
 C8782T C16667Y C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

MT325564
 2020-03-06 2020-04-10
 United States SARS-CoV-2/human/USA/FL_1177/2020
 C241T C3037T C5467T C8389T C14408T A23403G T25245Y G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MT325568
 2020-03-06 2020-04-10
 United States SARS-CoV-2/human/USA/FL_9656/2020
 C8782T A16467G C17747T A17858G C18060T C23185T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

MT325580
 2020-03-06 2020-04-10
 United States SARS-CoV-2/human/USA/KS_4126/2020
 C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MT325583
 2020-03-06 2020-04-10
 United States SARS-CoV-2/human/USA/MA_3672/2020
 C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MT325584
 2020-03-06 2020-04-10
 United States SARS-CoV-2/human/USA/MA_3699/2020
 C241T C2416T C3037T C3261M C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MT325585
 2020-03-06 2020-04-10
 United States SARS-CoV-2/human/USA/MA_3878/2020
 C241T C2416T C3037T C14408T C17747Y A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MT325588
 2020-03-06 2020-04-10
 United States SARS-CoV-2/human/USA/MO_4470/2020
 C241T C313T C3037T C13384T C14408T A23403G GGG28881AAC C29353T AAAAAAAAAAAAAAAAAAAAA29883-

MT325591
 2020-03-06 2020-04-10
 United States SARS-CoV-2/human/USA/NC_6999/2020
 C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

MT325594
 2020-03-06 2020-04-10
 United States SARS-CoV-2/human/USA/NH_0029/2020
 C241T C3037T C5007T C14408T C14554T A23403G AAAAAAAAAAAAAAAAAAAAA29883-

MT325595
 2020-03-06 2020-04-10
 United States SARS-CoV-2/human/USA/NH_0033/2020
 C241T C1059T C3037T T13006C C14408T A23403G G25563T C25688T AAAAAAAAAAAAAAAAAAAAA29883-

MT325604
 2020-03-06 2020-04-10
 United States SARS-CoV-2/human/USA/PA_4405/2020
 C241T C3037T C14408T GG18505RK C18877T G19847A A23403G G25563T A28480T AAAAAAAAAAAAAAAAAAAAA29883-

MT325606
 2020-03-06 2020-04-10
 United States SARS-CoV-2/human/USA/SC_3569/2020
 T490A C3177T C8782T T18736C C24034T T26729C G28077C T28144C A29700G AAAAAAAAAAAAAAAAAAAAA29883-

MT325616
 2020-03-06 2020-04-10
 United States SARS-CoV-2/human/USA/MA_3623/2020
 C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MT325628
 2020-03-06 2020-04-10
 United States SARS-CoV-2/human/USA/VA_6171/2020
 A361G C8782T G22468T T25559G T28144C G28878A G29742A AAAAAAAAAAAAAAAAAAAAA29883-

MT325635
 2020-03-06 2020-04-10
 United States SARS-CoV-2/human/USA/MA_2652/2020
 C241T C2416T C3037T C14408T A23403G G25563T G26109T AAAAAAAAAAAAAAAAAAAAA29883-

MT325636
 2020-03-06 2020-04-10
 United States SARS-CoV-2/human/USA/MA_3614/2020
 C241T C2416T C3037T C14408T A23403G G25563T G26233T AAAAAAAAAAAAAAAAAAAAA29883-

MT325637
 2020-03-06 2020-04-10
 United States SARS-CoV-2/human/USA/MA_3616/2020
 C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MT325638
 2020-03-06 2020-04-10
 United States SARS-CoV-2/human/USA/MA_3626/2020
 C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MT325640
 2020-03-06 2020-04-10
 United States SARS-CoV-2/human/USA/MA_3653/2020
 C241T C2416T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MT396241
 2020-03-06 2020-04-21
 China SARS-CoV-2/human/CHN/YN-0306-466/2020
 ATG1431- G15910T

EPI_ISL_414551
 2020-03-07 2020-03-13
 Netherlands hCoV-19/Netherlands/Utrecht_47/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_414552
 2020-03-07 2020-03-13
 Netherlands hCoV-19/Netherlands/Utrecht_46/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_414559 LR878303
 2020-03-07 2020-03-13
 Netherlands hCoV-19/Netherlands/ZuidHolland_17/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3145T C14408T A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_414589 MT188340
 2020-03-07 2020-03-13
 United States USA/MN2-MDH2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C C17410T AAAA29900-

EPI_ISL_414619
 2020-03-07 2020-03-15
 United States hCoV-19/USA/WA-UW32/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAGATGGA1- C6317T C8782T C9693T C17747T A17858G C18060T T28144C

EPI_ISL_414621
 2020-03-07 2020-03-15
 United States hCoV-19/USA/WA-UW34/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGG1- C8782T C17747T A17858G C18060T T28144C AAAAAAA29897-

EPI_ISL_414643
 2020-03-07 2020-03-15
 Finland hCoV-19/Finland/FIN-508/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC GTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29810-

EPI_ISL_415491 LR878112
 2020-03-07 2020-03-17
 Netherlands hCoV-19/Netherlands/NA_34/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- G11083T C14805T T17247C G26144T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415660
 2020-03-07 2020-03-19
 Chile hCoV-19/Chile/Santiago_op3d1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_415708
 2020-03-07 2020-03-19
 Switzerland hCoV-19/Switzerland/GE4984/2020
 ATTAAAGG1- C241T C3037T C13862T C14408T A23403G C28836T

EPI_ISL_416428
 2020-03-07 2020-03-21
 Vietnam hCoV-19/Vietnam/39607/2020
 ATTAAAGGT1- C241T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_416432
 2020-03-07 2020-03-21
 Saudi Arabia hCoV-19/SaudiArabia/KAIMRC-Alghoribi/2020
 AT1CC A4G T10A T13A -16CTTA C6312A G11083T C13730T C23929T A25615G C28311T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_416455 MT252823
 2020-03-07 2020-03-21
 United States SARS-CoV-2/human/USA/WA-UW38/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATA1- C8782T TG9704CT C17747T A17858G C18060T T28144C -29904AAANANANDAA

EPI_ISL_416511
 2020-03-07 2020-03-22
 France hCoV-19/France/B2348/2020
 C241T C1059T C3037T A5608G C14408T A23403G G25563T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_416512
 2020-03-07 2020-03-22
 France hCoV-19/France/B2349/2020
 C241T C1059T C3037T C14408T G21920A A23403G G25563T CCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29801-

EPI_ISL_416513
 2020-03-07 2020-03-22
 France hCoV-19/France/B2351/2020
 C241T C1059T C3037T C14408T C18928T G21920A A23403G G25563T AAAAAAAAAAAAAAAAAAAAAA29882-

EPI_ISL_416733
 2020-03-07 2020-03-23
 United Kingdom hCoV-19/England/SHEF-BFCEE/2020
 A1515G C9223T G11083T C14805T T17247C G26144T

EPI_ISL_416757
 2020-03-07 2020-03-23
 France hCoV-19/France/Bourg-en-Bresse_06678/2020
 C241T C3037T C14408T C15324T G21724T A23403G C25433T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_417007
 2020-03-07 2020-03-23
 Spain hCoV-19/Spain/Galicia201663/2020
 C241T C3037T C14408T A20268G A23403G AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_417009
 2020-03-07 2020-03-23
 Belgium hCoV-19/Belgium/ULG-3665/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A3859G G11083T C14805T T17247C C22323T G26144T A29598G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417164 MT605817
 2020-03-07 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S111/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417186 MT324062
 2020-03-07 2020-04-10
 South Africa SARS-CoV-2/human/ZAF/R03006/2020
 C241T C3037T C13620T C14408T C21595T A23403G

EPI_ISL_417276
 2020-03-07 2020-03-25
 United Kingdom hCoV-19/England/20109052506/2020
 G1125A ATG1605- C3787T C27911T

EPI_ISL_417279
 2020-03-07 2020-03-25
 United Kingdom hCoV-19/England/20109053606/2020
 C241T C3037T C14408T C20031A A23403G C27046T GGG28881AAC G29392T

EPI_ISL_417280
 2020-03-07 2020-03-25
 United Kingdom hCoV-19/England/20109054806/2020
 C21T A1515G C9223T G11083T C14805T T17247C G26144T

EPI_ISL_417337
 2020-03-07 2020-03-25
 France hCoV-19/France/Lyon_06625/2020
 C241T C3037T A11935C C14408T C15324T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_417338
 2020-03-07 2020-03-25
 France hCoV-19/France/Macon_06756/2020
 C241T C1059T C1684T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_417340
 2020-03-07 2020-03-25
 France hCoV-19/France/Bourg-en-Bresse_06813/2020
 C241T C1059T C3037T C3176T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_417705
 2020-03-07 2020-03-27
 Iceland hCoV-19/Iceland/65/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_417855
 2020-03-07 2020-03-27
 Iceland hCoV-19/Iceland/63/2020
 C241T C1059T C3037T C14408T G20419T A23403G G25563T

EPI_ISL_417857
 2020-03-07 2020-03-27
 Iceland hCoV-19/Iceland/66/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_417878
 2020-03-07 2020-03-27
 Slovakia hCoV-19/Slovakia/SK-BMC2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C2416T C3037T C14408T A23403G G25563T G26233T

EPI_ISL_417992
 2020-03-07 2020-03-28
 Portugal hCoV-19/Portugal/PT0007/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3373A C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_417997
 2020-03-07 2020-03-28
 Portugal hCoV-19/Portugal/PT0012/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_417999
 2020-03-07 2020-03-28
 Portugal hCoV-19/Portugal/PT0014/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_418013
 2020-03-07 2020-03-28
 Portugal hCoV-19/Portugal/PT0028/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3373A C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_418334
 2020-03-07 2020-03-07
 Canada hCoV-19/Canada/ON_PHL4069/2020
 A1- T8767C C8782T T10771C C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418346
 2020-03-07 2020-03-07
 Canada hCoV-19/Canada/ON_PHL0743/2020
 A1- C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418349
 2020-03-07 2020-03-07
 Canada hCoV-19/Canada/ON_PHL3650/2020
 A1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418371
 2020-03-07 2020-03-07
 Canada hCoV-19/Canada/ON_PHL2653/2020
 A1- C241T C3037T C9246T C14408T A23403G T27299C GGG28881AAC T29148C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418667
 2020-03-07 2020-03-30
 United Kingdom hCoV-19/England/20109047803/2020
 C241T C3037T C14408T A23403G

EPI_ISL_418852
 2020-03-07 2020-03-31
 Canada hCoV-19/Canada/BC_8718874/2020
 C8782T A17858G C18060T T28144C

EPI_ISL_419235
 2020-03-07 2020-04-01
 Spain hCoV-19/Spain/Madrid201706/2020
 C241T C3037T G11719A C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_419237
 2020-03-07 2020-04-01
 Spain hCoV-19/Spain/Madrid201738/2020
 G11083T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_419736 MT450932
 2020-03-07 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC17/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- T490A C3177T C8782T T18736C G19684T C24034T T26729C C27635T G28077C T28144C A29700G

EPI_ISL_419737 MT450933
 2020-03-07 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC18/2020
 ATTAA1- A2480G C2558T T6971C G6975T G6977A C8895Y C9170T G11083T C14805T C23034G G26144T

EPI_ISL_420316
 2020-03-07 2020-04-06
 Belgium hCoV-19/Belgium/QOJ-030751/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C3037T A4050C T8022G T13002C C14408T CA23266AG A23403G G23441C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_420318
 2020-03-07 2020-04-06
 Belgium hCoV-19/Belgium/TG-030757/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C5886T A12307G T13402G C14408T A23403G GGG28881AAC GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_420323
 2020-03-07 2020-04-06
 Belgium hCoV-19/Belgium/BJ-030767/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12880T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420327
 2020-03-07 2020-04-06
 Belgium hCoV-19/Belgium/HL-030771/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C23393T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420352
 2020-03-07 2020-04-06
 Belgium hCoV-19/Belgium/DCS-030796/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420450
 2020-03-07 2020-04-06
 Belgium hCoV-19/Belgium/KN-030756/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T A4050C T13402G T13408C C14408T C15324T C15371T A23403G G28690T T28785G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_420451
 2020-03-07 2020-04-06
 Belgium hCoV-19/Belgium/HC-030760/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G4255T G8687A T13402G C14408T T16456G A23403G A26530G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_420600
 2020-03-07 2020-04-06
 Argentina hCoV-19/Argentina/C121/2020
 A26C C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_422804 LR878113
 2020-03-07 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_43/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T1570C G11083T C14805T T17247C T21462C G26144T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_424342 MT528237
 2020-03-07 2020-04-12
 Italy SARS-CoV-2/human/ITA/INMI8/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G C23575T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_424842
 2020-03-07 2020-04-13
 United States hCoV-19/USA/SC_3575/2020
 T490A C3177T C8782T C16466T T18736C C24034T T26729C G28077C T28144C A29700G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424847
 2020-03-07 2020-04-13
 United States hCoV-19/USA/MA_4811/2020
 C241T C2416T C3037T C14408T A23403G G25563T G26233T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424850
 2020-03-07 2020-04-13
 United States hCoV-19/USA/IL_0087/2020
 C241T C3037T C10507T C14408T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424851
 2020-03-07 2020-04-13
 United States hCoV-19/USA/IL_0089/2020
 C8782T G16396T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424873
 2020-03-07 2020-04-13
 United States hCoV-19/USA/NC_0031/2020
 C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424875
 2020-03-07 2020-04-13
 United States hCoV-19/USA/NE_7025/2020
 G1440A G2891A C12651T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424883
 2020-03-07 2020-04-13
 United States hCoV-19/USA/PA_2317/2020
 C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424890
 2020-03-07 2020-04-13
 United States hCoV-19/USA/UT_8906/2020
 C241T C379A C1059T C3037T C14408T GG18505RK A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424899
 2020-03-07 2020-04-13
 United States hCoV-19/USA/IA_6391/2020
 C241T C3037T C14408T G22335T A23403G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424900
 2020-03-07 2020-04-13
 United States hCoV-19/USA/IA_6390/2020
 C241T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424903
 2020-03-07 2020-04-13
 United States hCoV-19/USA/SC_3570/2020
 T490A C3177T C8782T T18736C C24034T T26729C G28077C T28144C A29700G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424904
 2020-03-07 2020-04-13
 United States hCoV-19/USA/SC_3571/2020
 T490A C3177T C8782T T11635C T18736C C24034T T26729C G28077C T28144C A29700G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424919
 2020-03-07 2020-04-13
 United States hCoV-19/USA/MA_3642/2020
 C241T C2416T C3037T C14408T A23403G G25563T G26233T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_425798
 2020-03-07 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR67/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G14829K A23403G C25350T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_425804
 2020-03-07 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR74/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13694T C14408T A23403G C28310T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_426417 MT344945
 2020-03-07 2020-04-15
 United States SARS-CoV-2/human/USA/GA_2070/2020
 T490A C3177T C8782T T18736C C24034T T26729C G28077C T28144C A29700G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426421 MT344949
 2020-03-07 2020-04-15
 United States SARS-CoV-2/human/USA/HI_7881/2020
 C8717Y C8782T C14724T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426422 MT344950
 2020-03-07 2020-04-15
 United States SARS-CoV-2/human/USA/IN_72003/2020
 C241T C2416T C3037T C14408T A23403G C25169T G25563T CGAGGCCACGCGGAGTACGAT29733- AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426427 MT344962
 2020-03-07 2020-04-15
 United States SARS-CoV-2/human/USA/MN_0101/2020
 T514C ATG1605- C17410T AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_426429 MT344961
 2020-03-07 2020-04-15
 United States SARS-CoV-2/human/USA/NV_0016/2020
 ATG1605- C20270T A29683T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426431 MT344956
 2020-03-07 2020-04-15
 United States SARS-CoV-2/human/USA/OH_0020/2020
 C241T GTTATG515- C3037T C14408T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426432 MT344957
 2020-03-07 2020-04-15
 United States SARS-CoV-2/human/USA/PA_2734/2020
 C241T GTTATG515- C3037T C14408T C18877T A23403G C25516T G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426433 MT344958
 2020-03-07 2020-04-15
 United States SARS-CoV-2/human/USA/PA_2735/2020
 C241T GTTATG515- C3037T C14408T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_427370
 2020-03-07 2020-04-18
 Belgium hCoV-19/Belgium/ULG-10122/2020
 C241T C3037T C5974T C8394T C12469T C14408T C15277T C15324T A23403G

EPI_ISL_428676
 2020-03-07 2020-04-21
 Spain hCoV-19/Spain/Madrid_LP19_4952/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C3037T C8782T A20268G A23403G C26088T T28144C TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_429339
 2020-03-07 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI107/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429340
 2020-03-07 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI108/2020
 C241T C3037T A8072G C14408T A23403G

EPI_ISL_430064
 2020-03-07 2020-04-25
 Australia hCoV-19/Australia/VIC-CBA4/2020
 C8782T C17747T A17858G C18060T A24694T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_430291 MT632593
 2020-03-07 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S253/2020
 C8782T C17747T A17858G C18060T C20235T T28144C

EPI_ISL_434687
 2020-03-07 2020-05-01
 United States hCoV-19/USA/DC-HP00006/2020
 C241T C2416T C3037T A3094G C14408T A23403G G25563T

EPI_ISL_435303
 2020-03-07 2020-05-04
 Vietnam hCoV-19/Vietnam/VNHN_022/2020
 ATTAA1- C241T C3037T C14408T A23403G GGG28881AAC AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_435305
 2020-03-07 2020-05-04
 Vietnam hCoV-19/Vietnam/VNHN_026/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23403G GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_435612
 2020-03-07 2020-05-05
 United States hCoV-19/USA/CA-SCCPHD-UC133/2020
 C26601T

EPI_ISL_435615
 2020-03-07 2020-05-05
 United States hCoV-19/USA/CA-SCCPHD-UC136/2020
 C26032T G29711T

EPI_ISL_437210
 2020-03-07 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0009/2020
 C241T C3037T C14408T A23403G C27046T G27762T GGG28881AAC

EPI_ISL_437895 MT459899
 2020-03-07 2020-05-11
 Greece SARS-CoV-2/human/GRC/236_31815/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C2508T G9190T G11083T C12213T C14805T G15919T T17247C G26144T G26172A ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_438013
 2020-03-07 2020-05-12
 Austria hCoV-19/Austria/CeMM0168/2020
 C241T C3037T G12832A C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_438014
 2020-03-07 2020-05-12
 Austria hCoV-19/Austria/CeMM0169/2020
 C241T C3037T G12832A C14408T A23403G GGG28881AAC

EPI_ISL_438015
 2020-03-07 2020-05-12
 Austria hCoV-19/Austria/CeMM0170/2020
 C241T C3037T G12832A C14408T T22521K A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_438016
 2020-03-07 2020-05-12
 Austria hCoV-19/Austria/CeMM0171/2020
 C241T C3037T T4747Y G12832A C14408T A23403G GGG28881AAC AAAAAAAAA29895-

EPI_ISL_438017
 2020-03-07 2020-05-12
 Austria hCoV-19/Austria/CeMM0172/2020
 C241T C3037T G12832A C14408T T22521K A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_447842 MT472626
 2020-03-07 2020-05-14
 United States SARS-CoV-2/human/USA/IA-CDC-8200/2020
 C241T C3037T C14408T G22335T A23403G G28931A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_450116
 2020-03-07 2020-05-20
 United States hCoV-19/USA/NY-PV09439/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T C1059T C3037T C14408T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_452100
 2020-03-07 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-99/2020
 C241T C3037T A8072G C14408T A23403G GGG28881AAC

EPI_ISL_452125 MT512425
 2020-03-07 2020-05-26
 United States SARS-CoV-2/human/USA/GA-CDC-2059/2020
 T490A C3177T C6720T C8782Y T18736C C24034T T26729C G28077S T28144C A29700G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_452127 MT512427
 2020-03-07 2020-05-26
 United States SARS-CoV-2/human/USA/CO-CDC-5610/2020
 C8782Y A12787G C17747T A17858G C18060T A24694T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_452130 MT512430
 2020-03-07 2020-05-26
 United States SARS-CoV-2/human/USA/CO-CDC-5607/2020
 C9803T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_452345
 2020-03-07 2020-05-27
 China hCoV-19/Beijing/DT-travelES03/2020
 C241T C3037T C14408T A20268G C20897T T20901C A23403G

EPI_ISL_452354
 2020-03-07 2020-05-27
 China hCoV-19/Beijing/DT-travelIT03/2020
 C241T C3037T T8022G C14408T C18568T T20891G A23403G

EPI_ISL_452452
 2020-03-07 2020-05-27
 Spain hCoV-19/Spain/COV001922/2020
 C8782T T9477A C11674Y C14805T G25979T T28144C C28657T C28863T T29148Y G29402T

EPI_ISL_452742
 2020-03-07 2020-05-27
 Spain hCoV-19/Spain/COV000738/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T

EPI_ISL_452744
 2020-03-07 2020-05-27
 Spain hCoV-19/Spain/COV000736/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T C29870A

EPI_ISL_452747
 2020-03-07 2020-05-27
 Spain hCoV-19/Spain/COV000728/2020
 C8782T T9477A C14805T G19086K A23586G G25979T T28144C C28657T C28863T C29870A

EPI_ISL_452748
 2020-03-07 2020-05-27
 Spain hCoV-19/Spain/COV000727/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T

EPI_ISL_452749
 2020-03-07 2020-05-27
 Spain hCoV-19/Spain/COV000721/2020
 G343K C8782T T9477A C14805T G25979T T28144C C28657T C28863T

EPI_ISL_452755
 2020-03-07 2020-05-27
 Spain hCoV-19/Spain/COV000712/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T

EPI_ISL_454436
 2020-03-07 2020-05-28
 Sweden hCoV-19/Sweden/20-08040/2020
 C241T C3037T C14408T A23403G A26530G

EPI_ISL_454472
 2020-03-07 2020-05-28
 Sweden hCoV-19/Sweden/20-08101/2020
 C241T C3037T A12358T C14408T A23403G GGG28881AAC

EPI_ISL_454473
 2020-03-07 2020-05-28
 Sweden hCoV-19/Sweden/20-08102/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_454474
 2020-03-07 2020-05-28
 Sweden hCoV-19/Sweden/20-08103/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_454494
 2020-03-07 2020-05-28
 Sweden hCoV-19/Sweden/20-08045/2020
 C241T C3037T C14408T A23403G G29140T

EPI_ISL_454890
 2020-03-07 2020-05-29
 Sweden hCoV-19/Sweden/20-50220/2020
 C241T C3037T C11866T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_454891
 2020-03-07 2020-05-29
 Sweden hCoV-19/Sweden/20-50222/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_454892
 2020-03-07 2020-05-29
 Sweden hCoV-19/Sweden/20-50224/2020
 C241T C3037T C5730T C14408T A23403G GGG28881AAC A28995T

EPI_ISL_454893
 2020-03-07 2020-05-29
 Sweden hCoV-19/Sweden/20-50227/2020
 C241T C3037T C5730T C14408T A23403G GGG28881AAC

EPI_ISL_454896
 2020-03-07 2020-05-29
 Sweden hCoV-19/Sweden/20-50260/2020
 C241T C3037T C14408T C23393T A23403G

EPI_ISL_454903
 2020-03-07 2020-05-29
 Sweden hCoV-19/Sweden/20-50268/2020
 C241T C3037T C5730T C14408T A23403G GGG28881AAC

EPI_ISL_455874
 2020-03-07 2020-06-01
 Sweden hCoV-19/Sweden/20-50217/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_455877
 2020-03-07 2020-06-01
 Sweden hCoV-19/Sweden/20-50221/2020
 C241T C3037T C14408T G22583A A23403G

EPI_ISL_455879
 2020-03-07 2020-06-01
 Sweden hCoV-19/Sweden/20-50229/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_455880
 2020-03-07 2020-06-01
 Sweden hCoV-19/Sweden/20-50238/2020
 C241T A2292G C3037T C3373A C5654T C14408T A23403G C24034T GGG28881AAC

EPI_ISL_455881
 2020-03-07 2020-06-01
 Sweden hCoV-19/Sweden/20-50240/2020
 C241T C3037T C14408T C23393T A23403G G29639A

EPI_ISL_455882
 2020-03-07 2020-06-01
 Sweden hCoV-19/Sweden/20-50241/2020
 C241T G509A C3037T C14408T G17658T G22583A A23403G

EPI_ISL_455883
 2020-03-07 2020-06-01
 Sweden hCoV-19/Sweden/20-50242/2020
 C241T C3037T C3373A C5654T C14408T G19962T A23403G C24034T GGG28881AAC

EPI_ISL_455885
 2020-03-07 2020-06-01
 Sweden hCoV-19/Sweden/20-50245/2020
 C241T C3037T C3373A C5654T C14408T A23403G C24034T GGG28881AAC

EPI_ISL_455886
 2020-03-07 2020-06-01
 Sweden hCoV-19/Sweden/20-50246/2020
 C241T A2292G C3037T C3373A C5654T C14408T A23403G C24034T GGG28881AAC

EPI_ISL_455889
 2020-03-07 2020-06-01
 Sweden hCoV-19/Sweden/20-50250/2020
 C241T C2416T C3037T C14408T A23403G G25563T G26233T

EPI_ISL_455890
 2020-03-07 2020-06-01
 Sweden hCoV-19/Sweden/20-50251/2020
 C241T C3037T C14408T C22277A A23403G C27046T GGG28881AAC

EPI_ISL_455892
 2020-03-07 2020-06-01
 Sweden hCoV-19/Sweden/20-50254/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_455893
 2020-03-07 2020-06-01
 Sweden hCoV-19/Sweden/20-50255/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_455894
 2020-03-07 2020-06-01
 Sweden hCoV-19/Sweden/20-50256/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_455897
 2020-03-07 2020-06-01
 Sweden hCoV-19/Sweden/20-50259/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_457796 MT646069
 2020-03-07 2020-06-02
 United States SARS-CoV-2/human/USA/DC-HP00052/2020
 C241T C3037T C14408T A23403G T27299C GGG28881AAC T29148C

EPI_ISL_457797 MT646117
 2020-03-07 2020-06-02
 United States SARS-CoV-2/human/USA/DC-HP00054/2020
 C241T C1059T C3037T G12191K C14408T A23403G G25563T

EPI_ISL_460103 MT520178
 2020-03-07 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00426/2020
 ATTAAAG1- C241T C2416T C3037T C14408T A23403G G25563T G26849T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_460117 MT520192
 2020-03-07 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00417/2020
 ATTAAAGGTTTATA1- C241T C2416T C3037T C14408T A23403G G25563T C26681T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_460212 MT520287
 2020-03-07 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00427/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C2416T C3037T C14408T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460235 MT520310
 2020-03-07 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00431/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C2416T C3037T C14408T A23403G G25563T G26233T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_460239 MT520314
 2020-03-07 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00437/2020
 ATTAAA1- C241T C2416T C3037T G12361T C14408T A17399C A23403G G25563T G26233T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_460241 MT520316
 2020-03-07 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00415/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_460245 MT520320
 2020-03-07 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00420/2020
 ATTAAA1- C241T C2416T C3037T C14408T A23403G G25563T G26233T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_460266 MT520341
 2020-03-07 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00421/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C2416T C3037T C14408T A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_460300 MT520375
 2020-03-07 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00419/2020
 ATTAAA1- C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_460313 MT520388
 2020-03-07 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00425/2020
 ATTAAAGGTTTATAC1- C241T C2416T C3037T C14408T A23403G G25563T G26233T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_460321 MT520396
 2020-03-07 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00443/2020
 ATTAAA1- C241T C2416T C3037T G12361T C14408T A17399C C18929T A23403G G25563T G26233T AAAAAAAAAAAAAAAAAAAA29884-

EPI_ISL_460353 MT520428
 2020-03-07 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00416/2020
 ATTAAAG1- C241T C2416T C3037T C10015T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_460366 MT520441
 2020-03-07 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00430/2020
 ATTAAA1- C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_460371 MT520446
 2020-03-07 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00418/2020
 ATTAAAGGTTTA1- C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_460384 MT520459
 2020-03-07 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00422/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_460397 MT520472
 2020-03-07 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00424/2020
 ATTAAAGGTTTATACCTT1- C241T C2416T C3037T G5461T C14408T A23403G G25563T G26233T GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_460434 MT520509
 2020-03-07 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00439/2020
 ATTAAAGGTTT1- C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_460442 MT520517
 2020-03-07 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00432/2020
 ATTAAAGGTTTATAC1- C241T C2416T C3037T C14408T A23403G G25563T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_469078
 2020-03-07 2020-06-17
 Sweden hCoV-19/Sweden/20-50261/2020
 C241T C3037T G11761T C14408T A23403G C27046T GGG28881AAC -29708GAGCTGC

EPI_ISL_475549
 2020-03-07 2020-06-23
 Sweden hCoV-19/Sweden/20-08046/2020
 G1397A A7970G G14653A C18788T T28688C G29742T

EPI_ISL_475872
 2020-03-07 2020-06-25
 Austria hCoV-19/Austria/CeMM0461/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T19839C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475878
 2020-03-07 2020-06-25
 Austria hCoV-19/Austria/CeMM0473/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T19839C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479817
 2020-03-07 2020-07-01
 Japan hCoV-19/Japan/PG-0054/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C11752T C12068T C19170A TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_479818
 2020-03-07 2020-07-01
 Japan hCoV-19/Japan/PG-0055/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C11752T C12068T C19170A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479839
 2020-03-07 2020-07-01
 Japan hCoV-19/Japan/PG-0095/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C11752T C12068T C19170A CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_479840
 2020-03-07 2020-07-01
 Japan hCoV-19/Japan/PG-0097/2020
 ATTAAAGGTTTATACC1- C11752T C19170A AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_479903
 2020-03-07 2020-07-01
 Japan hCoV-19/Japan/PG-0200/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C8782T G16381A T17877C T28144C G28878A G29742A ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_482577
 2020-03-07 2020-07-04
 China hCoV-19/Hangzhou/HZCDC6228/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G C23575T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_483547
 2020-03-07 2020-07-07
 Bahrain hCoV-19/Bahrein/BAH-06/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C835T C884T G1397A G8653T G11083T G23426A T28688C G29742T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_488277
 2020-03-07 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F7AB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G T24814C C27046T C28814G GGG28881AAC C29784T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488355
 2020-03-07 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F69F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11321A C14408T A23403G C25350T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491437
 2020-03-07 2020-07-17
 Costa Rica hCoV-19/Costa Rica/INC-0025/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATC1- C241T C1059T C3037T C14408T A23403G G25563T CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

EPI_ISL_500109
 2020-03-07 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A5155/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C2558T G11083T C14805T G26144T

EPI_ISL_500400
 2020-03-07 2020-07-28
 Spain hCoV-19/Spain/COV005966/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C8782T C8980T T9477A C14805T G25979T T28144C C28657T C28863T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_500401
 2020-03-07 2020-07-28
 Spain hCoV-19/Spain/COV005967/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C8782T C8980T T9477A C14805T G25979T T28144C C28657T C28863T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_506954
 2020-03-07 2020-08-02
 South Korea hCoV-19/Korea/KCDC2160/2020
 ATT1- C241T G1820A G5572T G11083T C14805T C21575T G22592T G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_510265
 2020-03-07 2020-08-06
 Spain hCoV-19/Spain/COV003176/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C1059T C3037T C10078T C14408T C16726T A23403G G25563T

EPI_ISL_516626
 2020-03-07 2020-08-21
 Peru hCoV-19/Peru/INS-087/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAA1- C241T C813T G1212T C3037T C14408T A23403G G25429T ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_516629
 2020-03-07 2020-08-21
 Germany hCoV-19/Berlin/ChVir-D712-1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T C3037T C14408T A23403G GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_516630
 2020-03-07 2020-08-21
 Germany hCoV-19/Berlin/ChVir-D666-2/2020
 ATTAAAGGTTTAT1- C241T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_516631
 2020-03-07 2020-08-21
 Germany hCoV-19/Berlin/ChVir-D718-3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T C14408T A23403G AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_516632
 2020-03-07 2020-08-21
 Germany hCoV-19/Berlin/ChVir-D672-4/2020
 ATTAAAGGTTTA1- C241T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_516635
 2020-03-07 2020-08-21
 Germany hCoV-19/Berlin/ChVir-D667-7/2020
 ATTAAAGGTTT1- C241T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_516636
 2020-03-07 2020-08-21
 Germany hCoV-19/Berlin/ChVir-D671-8/2020
 ATTAAAGGTTTATAC1- C241T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_516638
 2020-03-07 2020-08-21
 Germany hCoV-19/Berlin/ChVir-D710-10/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C3037T C14408T G20469R A23403G AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_516640
 2020-03-07 2020-08-21
 Germany hCoV-19/Berlin/ChVir-D717-D761-12/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C3037T C14408T A14801R A23403G AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_523927
 2020-03-07 2020-08-27
 Germany hCoV-19/Germany/NW-56/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_523949
 2020-03-07 2020-08-27
 Germany hCoV-19/Germany/NW-78/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525581
 2020-03-07 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-11509-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T TA27267- TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_525582
 2020-03-07 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-11513-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_525583
 2020-03-07 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-11537-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_525584
 2020-03-07 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-11538-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_529033
 2020-03-07 2020-09-09
 United States hCoV-19/USA/NY-Wadsworth-11460-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- A2480G C2558T G11083T C14805T C17010A C21575T G26144T C26985A TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_530032
 2020-03-07 2020-09-10
 Spain hCoV-19/Spain/MD-LP104-2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5274T C14408T A18001C A20268G C21304T A23403G G29734C ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_537412
 2020-03-07 2020-09-16
 Spain hCoV-19/Spain/RI-CSIC-99005869/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C8782T T9477A C14805T G25979T A28024W T28144C C28657T C28863T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_539506
 2020-03-07 2020-09-18
 Spain hCoV-19/Spain/AR-ISCIII-201665/2020
 T8392C A8897G G11083T G26144T

EPI_ISL_539507
 2020-03-07 2020-09-18
 Spain hCoV-19/Spain/AR-ISCIII-201672/2020
 G11083T T12826A

EPI_ISL_539508
 2020-03-07 2020-09-18
 Spain hCoV-19/Spain/AR-ISCIII-201673/2020
 G11083T G26144T

EPI_ISL_539511
 2020-03-07 2020-09-18
 Spain hCoV-19/Spain/AR-ISCIII-201692/2020
 G11083T G26144T

EPI_ISL_539512
 2020-03-07 2020-09-18
 Spain hCoV-19/Spain/AR-ISCIII-201693/2020
 C4543T G11071C G11083T G26144T

EPI_ISL_539513
 2020-03-07 2020-09-18
 Spain hCoV-19/Spain/AR-ISCIII-201779/2020
 C106T C4543T T8057C G11071C C11074T G11083T G26144T

EPI_ISL_539514
 2020-03-07 2020-09-18
 Spain hCoV-19/Spain/AR-ISCIII-201780/2020
 G11071C G11083T G26144T

EPI_ISL_539559
 2020-03-07 2020-09-18
 Spain hCoV-19/Spain/EX-ISCIII-201654/2020
 A15657G T28144C C29485A C29603A

EPI_ISL_539560
 2020-03-07 2020-09-18
 Spain hCoV-19/Spain/EX-ISCIII-201655/2020
 G11083T G26144T

EPI_ISL_566048
 2020-03-07 2020-10-01
 United Kingdom hCoV-19/England/201090129/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T A11755G C14408T A23403G C27046T GGG28881AAC AAAAAAAAAAAAAAA29889-

EPI_ISL_569244
 2020-03-07 2020-10-02
 France hCoV-19/France/IHU-0014/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C14408T C15324T A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

MT325577
 2020-03-07 2020-04-10
 United States SARS-CoV-2/human/USA/IL_0087/2020
 C241T C3037T C10507T C14408T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MT325578
 2020-03-07 2020-04-10
 United States SARS-CoV-2/human/USA/IL_0089/2020
 C8782T G16396T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

MT325586
 2020-03-07 2020-04-10
 United States SARS-CoV-2/human/USA/MA_4811/2020
 C241T C2416T C3037T C14408T A23403G G25563T G26233T AAAAAAAAAAAAAAAAAAAAA29883-

MT325590
 2020-03-07 2020-04-10
 United States SARS-CoV-2/human/USA/NC_0031/2020
 C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MT325593
 2020-03-07 2020-04-10
 United States SARS-CoV-2/human/USA/NE_7025/2020
 G1440A G2891A C12651T AAAAAAAAAAAAAAAAAAAAA29883-

MT325601
 2020-03-07 2020-04-10
 United States SARS-CoV-2/human/USA/PA_2317/2020
 C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MT325607
 2020-03-07 2020-04-10
 United States SARS-CoV-2/human/USA/SC_3575/2020
 T490A C3177T C8782T C16466T T18736C C24034T T26729C G28077C T28144C A29700G AAAAAAAAAAAAAAAAAAAAA29883-

MT325610
 2020-03-07 2020-04-10
 United States SARS-CoV-2/human/USA/UT_8906/2020
 C241T C379A C1059T C3037T C14408T GG18505RK A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MT325615
 2020-03-07 2020-04-10
 United States SARS-CoV-2/human/USA/IA_6391/2020
 C241T C3037T C14408T G22335T A23403G AAAAAAAAAAAAAAAAAAAAA29883-

MT325621
 2020-03-07 2020-04-10
 United States SARS-CoV-2/human/USA/IA_6390/2020
 C241T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAA29883-

MT325624
 2020-03-07 2020-04-10
 United States SARS-CoV-2/human/USA/SC_3570/2020
 T490A C3177T C8782T T18736C C24034T T26729C G28077C T28144C A29700G AAAAAAAAAAAAAAAAAAAAA29883-

MT325625
 2020-03-07 2020-04-10
 United States SARS-CoV-2/human/USA/SC_3571/2020
 T490A C3177T C8782T T11635C T18736C C24034T T26729C G28077C T28144C A29700G AAAAAAAAAAAAAAAAAAAAA29883-

MT325639
 2020-03-07 2020-04-10
 United States SARS-CoV-2/human/USA/MA_3642/2020
 C241T C2416T C3037T C14408T A23403G G25563T G26233T AAAAAAAAAAAAAAAAAAAAA29883-

MT459898
 2020-03-07 2020-05-11
 Greece SARS-CoV-2/human/GRC/235_31783/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

MT509463
 2020-03-07 2020-05-22
 United States SARS-CoV-2/human/USA/DC-HP00006/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T A3094G C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_414536 LR878319
 2020-03-08 2020-03-13
 Netherlands hCoV-19/Netherlands/NoordBrabant_27/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- C6255T C17410T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_414537 LR878326
 2020-03-08 2020-03-13
 Netherlands hCoV-19/Netherlands/NoordBrabant_28/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- C6255T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_414539 LR878336
 2020-03-08 2020-03-13
 Netherlands hCoV-19/Netherlands/NoordBrabant_30/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- C6255T G25252T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_414554 LR878314
 2020-03-08 2020-03-13
 Netherlands hCoV-19/Netherlands/Utrecht_15/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C22277A A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_414555 LR878309
 2020-03-08 2020-03-13
 Netherlands hCoV-19/Netherlands/Utrecht_16/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6255T C8782T G16381A T28144C G28878A G29742A GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_414557 LR878289
 2020-03-08 2020-03-13
 Netherlands hCoV-19/Netherlands/ZuidHolland_15/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3145T C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_414564 LR878308
 2020-03-08 2020-03-13
 Netherlands hCoV-19/Netherlands/ZuidHolland_22/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_414616
 2020-03-08 2020-03-15
 United States hCoV-19/USA/WA-UW29/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATC1- C241T C1059T C3037T C14408T A23403G G25563T G29553A

EPI_ISL_414617
 2020-03-08 2020-03-15
 United States hCoV-19/USA/WA-UW30/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- T150C T153G C8782T C17747T A17858G C18060T A26530G T28144C G29422A A29903-

EPI_ISL_414618
 2020-03-08 2020-03-15
 United States hCoV-19/USA/WA-UW31/2020
 TA3BD C8782T C10369T C17747T A17858G C18060T T23010C T28144C

EPI_ISL_414620
 2020-03-08 2020-03-15
 United States hCoV-19/USA/WA-UW33/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAA1- C8782T C17747T A17858G C18060T T28144C A29903-

EPI_ISL_414642
 2020-03-08 2020-03-15
 Finland hCoV-19/Finland/FIN-455/2020
 C241T C1059T C3037T C14408T A23403G G25563T GTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29810-

EPI_ISL_415478 LR878087
 2020-03-08 2020-03-17
 Netherlands hCoV-19/Netherlands/NA_21/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- G210T A2480G C2558T G11083T C14805T G26144T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415479 LR878074
 2020-03-08 2020-03-17
 Netherlands hCoV-19/Netherlands/NA_22/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- T514C ATG1605- G9314T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415481 LR878084
 2020-03-08 2020-03-17
 Netherlands hCoV-19/Netherlands/NA_24/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C1059T C3037T C6255T C14408T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415606 MT252802
 2020-03-08 2020-03-18
 United States SARS-CoV-2/human/USA/WA-UW41/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTG1- G261B C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAA29892-

EPI_ISL_415608 MT252804
 2020-03-08 2020-03-18
 United States SARS-CoV-2/human/USA/WA-UW43/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C6310T C8782T C17747T A17858G C18060T G27327T T28144C -29904AANANANADA

EPI_ISL_415609 MT252805
 2020-03-08 2020-03-18
 United States SARS-CoV-2/human/USA/WA-UW44/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- AACC34TTTA C6310T C8782T C17747T A17858G C18060T G27327T T28144C GA29868CT -29904ANANNAAT

EPI_ISL_415615 MT252810
 2020-03-08 2020-03-18
 United States SARS-CoV-2/human/USA/WA-UW50/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- T2153A A3889G C8782T C17747T A17858G C18060T C27167T T28144C

EPI_ISL_415616 MT252811
 2020-03-08 2020-03-18
 United States SARS-CoV-2/human/USA/WA-UW51/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATC1- C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAA29891-

EPI_ISL_415640
 2020-03-08 2020-03-18
 United Kingdom hCoV-19/Scotland/EDB003/2020
 C241T C3037T C14408T A23403G C23575T G23587C

EPI_ISL_415661
 2020-03-08 2020-03-19
 Chile hCoV-19/Chile/Santiago_op4d1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_415707
 2020-03-08 2020-03-19
 Switzerland hCoV-19/Switzerland/GE6679/2020
 ATTAAA1- C241T C3037T C14408T C15324T A23403G

EPI_ISL_416477
 2020-03-08 2020-03-22
 Georgia hCoV-19/Georgia/Tb-390/2020
 ATT1- C8782T T9477A C14805T G15359A G25979T T28144C C28657T C28863T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_416493
 2020-03-08 2020-03-22
 France hCoV-19/France/HF2196/2020
 C241T C3037T C14408T C15324T A23403G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_416758
 2020-03-08 2020-03-23
 France hCoV-19/France/Lyon_0693/2020
 C241T C337T C3037T T9208C C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_417017
 2020-03-08 2020-03-23
 Belgium hCoV-19/Belgium/ULG-6638/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G C9223T C9438T G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417165 MT605815
 2020-03-08 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S112/2020
 C8782T C17747T A17858G C18060T C18894T T28144C

EPI_ISL_417265
 2020-03-08 2020-03-25
 United Kingdom hCoV-19/England/20109050406/2020
 C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC

EPI_ISL_417291
 2020-03-08 2020-03-25
 United Kingdom hCoV-19/England/20109094206/2020
 G11083T C14267T C14805T T17247C C24023T G26144T

EPI_ISL_417293
 2020-03-08 2020-03-25
 United Kingdom hCoV-19/England/20109097506/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_417295
 2020-03-08 2020-03-25
 United Kingdom hCoV-19/England/20109098806/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_417299
 2020-03-08 2020-03-25
 United Kingdom hCoV-19/England/20109099206/2020
 C241T C3037T C3373A C14408T C14688T A23403G GGG28881AAC

EPI_ISL_417312
 2020-03-08 2020-03-25
 United Kingdom hCoV-19/England/20110059306/2020
 ATG1605- C1912T A19953M

EPI_ISL_417313
 2020-03-08 2020-03-25
 United Kingdom hCoV-19/England/20110097506/2020
 ATG1605- C14621T

EPI_ISL_417339
 2020-03-08 2020-03-25
 France hCoV-19/France/Lyon_06820/2020
 C241T C3037T A11935C C14408T C15324T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_417390
 2020-03-08 2020-03-25
 Australia hCoV-19/Australia/NSW27/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3732T C14408T T19839C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417391
 2020-03-08 2020-03-25
 Australia hCoV-19/Australia/NSW28/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1397A C2113T T9743C G11083T G14122T C18928T T28688C G29374A G29742T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417393
 2020-03-08 2020-03-25
 Australia hCoV-19/Australia/NSW35/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- G1397A C2113T T9574C G11071C C11074T G11083T C18928T T28688C G29374A CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_417728
 2020-03-08 2020-03-27
 Iceland hCoV-19/Iceland/70/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC T29104C

EPI_ISL_417749
 2020-03-08 2020-03-27
 Iceland hCoV-19/Iceland/69/2020
 C241T C3037T C14408T A23403G G24077T

EPI_ISL_417880
 2020-03-08 2020-03-27
 Slovakia hCoV-19/Slovakia/SK-BMC6/2020
 T514C ATG1605- C17410T TG29867WR

EPI_ISL_417991
 2020-03-08 2020-03-28
 Portugal hCoV-19/Portugal/PT0006b/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G C28310T C29144T T29446C TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_417993
 2020-03-08 2020-03-28
 Portugal hCoV-19/Portugal/PT0008/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_417994
 2020-03-08 2020-03-28
 Portugal hCoV-19/Portugal/PT0009/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G C25791T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_417995
 2020-03-08 2020-03-28
 Portugal hCoV-19/Portugal/PT0010/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3373A C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_417996
 2020-03-08 2020-03-28
 Portugal hCoV-19/Portugal/PT0011/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G C29144T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_417998
 2020-03-08 2020-03-28
 Portugal hCoV-19/Portugal/PT0013/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_418224
 2020-03-08 2020-03-29
 France hCoV-19/France/HF2150/2020
 C241T C1059T C3037T C14408T A23403G G25563T A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_418225
 2020-03-08 2020-03-29
 France hCoV-19/France/HF2155/2020
 C241T C2416T C3037T C6666T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_418242
 2020-03-08 2020-03-29
 Algeria hCoV-19/Algeria/G0640_2265/2020
 C241T C1059T C3037T C10582T C14408T A23403G G25563T C29353T GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_418322
 2020-03-08 2020-03-08
 Canada hCoV-19/Canada/ON_PHL3917/2020
 A1- G1397A G11083T T22032C T28688C G29742T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418331
 2020-03-08 2020-03-08
 Canada hCoV-19/Canada/ON_PHL6883/2020
 A1- A2500G C8782T C17747T A17858G C18060T A24694T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418348
 2020-03-08 2020-03-08
 Canada hCoV-19/Canada/ON_PHL3680/2020
 A1- C241T C1059T C3037T C14408T A23403G G25563T G28368A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418355
 2020-03-08 2020-03-08
 Canada hCoV-19/Canada/ON_PHLU8150/2020
 A1- C241T C3037T C14408T A23403G G29254T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418580
 2020-03-08 2020-03-30
 Ireland hCoV-19/Ireland/Dublin-22361/2020
 C241T C3037T A3558G C14408T A15914G A23403G GGG28881AAC

EPI_ISL_418581
 2020-03-08 2020-03-30
 Ireland hCoV-19/Ireland/Dublin-22428/2020
 C241T C3037T C6628T C14408T A23403G GGG28881AAC

EPI_ISL_419260 MT322401
 2020-03-08 2020-04-08
 United States SARS-CoV-2/human/USA/VA-DCLS-0008/2020
 ATT1- C241T C3037T C14408T C18877T A23403G G25563T

EPI_ISL_419296 LC547518
 2020-03-08 2020-04-02
 Japan hCoV-19/Japan/P1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_419578
 2020-03-08 2020-04-02
 Luxembourg hCoV-19/Luxembourg/LNS2614631/2020
 C241T C3037T G11083K C14408T C15324T C16551M A19397W A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_419741 MT450935
 2020-03-08 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC20/2020
 ATTAAAGGTTTATACCTTC1- C8782T C17747T A17858G C18060T A24694T T28144C

EPI_ISL_421173
 2020-03-08 2020-04-07
 Spain hCoV-19/Spain/Madrid_H12_1703/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11704T C14408T G15327T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_422805 LR878118
 2020-03-08 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_44/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- C17410T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422807 LR878119
 2020-03-08 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_46/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T1570C G11083T C14805T T17247C G26144T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422808 LR878132
 2020-03-08 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_47/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C13119T C14805T T17247C G26144T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422811 LR878145
 2020-03-08 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_50/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- C17410T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422818 LR878133
 2020-03-08 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_57/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T T17247C G26144T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422819 LR878149
 2020-03-08 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_58/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- T4427C C17410T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422864
 2020-03-08 2020-04-11
 Netherlands hCoV-19/Netherlands/NoordBrabant_105/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_424861
 2020-03-08 2020-04-13
 United States hCoV-19/USA/GA_2118/2020
 T490A C3177T C8782T G14118A T18736C C24034T T26729C G28077C T28144C A29700G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424865
 2020-03-08 2020-04-13
 United States hCoV-19/USA/IA_6394/2020
 C241T T3011C C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424872
 2020-03-08 2020-04-13
 United States hCoV-19/USA/NC_0024/2020
 C241T C2416T C3037T C14408T G14707K A23403G G25563T G26233T G28812K AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424880
 2020-03-08 2020-04-13
 United States hCoV-19/USA/OH_0023/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424884
 2020-03-08 2020-04-13
 United States hCoV-19/USA/PA_2937/2020
 C241T C2416T C3037T C14408T T15393Y A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424888
 2020-03-08 2020-04-13
 United States hCoV-19/USA/SC_6370/2020
 T490A C3177T C6525Y C8782T C8956T C17074Y T18736C C24034T T26729C G28077C T28144C A29700G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424891
 2020-03-08 2020-04-13
 United States hCoV-19/USA/VA_6352/2020
 C241T C3037T C14408T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424892
 2020-03-08 2020-04-13
 United States hCoV-19/USA/VA_6377/2020
 C241T C3037T C14408T GG18505RK C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424893
 2020-03-08 2020-04-13
 United States hCoV-19/USA/VA_6382/2020
 C8782T C17747T A17858G C18060T G18756K T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424894
 2020-03-08 2020-04-13
 United States hCoV-19/USA/VA_6389/2020
 C241T C3037T G11417T C14408T A23403G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424895
 2020-03-08 2020-04-13
 United States hCoV-19/USA/IA_6396/2020
 C241T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424896
 2020-03-08 2020-04-13
 United States hCoV-19/USA/IA_6395/2020
 C241T T3011C C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424897
 2020-03-08 2020-04-13
 United States hCoV-19/USA/IA_6401/2020
 C241T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424898
 2020-03-08 2020-04-13
 United States hCoV-19/USA/IA_6399/2020
 C241T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426050
 2020-03-08 2020-04-14
 United States hCoV-19/USA/NY-Wadsworth-11666-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426290
 2020-03-08 2020-04-15
 United States hCoV-19/USA/NY-Wadsworth-11735-01/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_426291
 2020-03-08 2020-04-15
 United States hCoV-19/USA/NY-Wadsworth-11717-01/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T C3037T C8770Y C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_426311
 2020-03-08 2020-04-15
 United States hCoV-19/USA/NY-Wadsworth-11736-02/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426416 MT344944
 2020-03-08 2020-04-15
 United States SARS-CoV-2/human/USA/CT_9849/2020
 C241Y C1059Y C8782T G13571K T16857Y C17747Y A17858G C18060T A23403R G24933K T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426423 MT344951
 2020-03-08 2020-04-15
 United States SARS-CoV-2/human/USA/IN_82003/2020
 C241T C2416T C3037T C14408T A23403G C25169T G25563T CGAGGCCACGCGGAGTACGAT29733- AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426428 MT344963
 2020-03-08 2020-04-15
 United States SARS-CoV-2/human/USA/NC_0025/2020
 G204K C241T C2416T C3037T G3638R C4543T G11042S C14408T A23403G T24412Y G25563T G26233T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426430 MT344955
 2020-03-08 2020-04-15
 United States SARS-CoV-2/human/USA/OH_0019/2020
 C241T GTTATG515- C3037T C14408T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426434 MT344959
 2020-03-08 2020-04-15
 United States SARS-CoV-2/human/USA/PA_2887/2020
 C241T C1059T C3037T C13994Y C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_428678
 2020-03-08 2020-04-21
 Spain hCoV-19/Spain/Madrid_LP22_5885/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C3037T C8782T A20268G A23403G C26088T T28144C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_428679
 2020-03-08 2020-04-21
 Spain hCoV-19/Spain/Madrid_LP23_5852/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T T17126C A20268G A23403G -29826T -29861T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_428823
 2020-03-08 2020-04-22
 Singapore hCoV-19/Singapore/44/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAG1- T9542Y G9950R C14029Y AAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29813-

EPI_ISL_428828
 2020-03-08 2020-04-22
 Singapore hCoV-19/Singapore/49/2020
 ATTA1- C241T C3037T C14408T A23403G AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_428829
 2020-03-08 2020-04-22
 Singapore hCoV-19/Singapore/50/2020
 A23359G AGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29799-

EPI_ISL_429145
 2020-03-08 2020-04-23
 Sweden hCoV-19/Sweden/20-50170/2020
 C241T C3037T A12790G C13568T C14408T A23403G

EPI_ISL_429146
 2020-03-08 2020-04-23
 Sweden hCoV-19/Sweden/20-50171/2020
 C241T G1306T C3037T G11535T A12790G C13568T C14408T A23403G

EPI_ISL_429147
 2020-03-08 2020-04-23
 Sweden hCoV-19/Sweden/20-50172/2020
 C241T C3037T A12790G C13568T C14408T A23403G

EPI_ISL_429148
 2020-03-08 2020-04-23
 Sweden hCoV-19/Sweden/20-50173/2020
 C241T C3037T A12790G C13568T C14408T A23403G

EPI_ISL_429150
 2020-03-08 2020-04-23
 Sweden hCoV-19/Sweden/20-50175/2020
 C241T C3037T A12790G C13568T C14408T A23403G

EPI_ISL_429151
 2020-03-08 2020-04-23
 Sweden hCoV-19/Sweden/20-50176/2020
 C241T C3037T A12790G C13568T C14408T A23403G

EPI_ISL_429152
 2020-03-08 2020-04-23
 Sweden hCoV-19/Sweden/20-50179/2020
 C241T C2416T C3037T C14408T G21746T A23403G G25563T

EPI_ISL_429153
 2020-03-08 2020-04-23
 Sweden hCoV-19/Sweden/20-50180/2020
 C241T C3037T A12790G C13568T C14408T A23403G

EPI_ISL_429154
 2020-03-08 2020-04-23
 Sweden hCoV-19/Sweden/20-50181/2020
 C241T C3037T A12790G C13568T C14408T A23403G

EPI_ISL_429337
 2020-03-08 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI105/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429342
 2020-03-08 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI110/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429344
 2020-03-08 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI113/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429348
 2020-03-08 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI119/2020
 C241T C1059T C3037T C5886T C14408T G20419T A23403G G25563T

EPI_ISL_429349
 2020-03-08 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI120/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429350
 2020-03-08 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI121/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429351
 2020-03-08 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI122/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429352
 2020-03-08 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI123/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429353
 2020-03-08 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI125/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_429354
 2020-03-08 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI126/2020
 C241T C1059T C3037T C14408T G15380T A23403G G25563T

EPI_ISL_429355
 2020-03-08 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI128/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429356
 2020-03-08 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI129/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429357
 2020-03-08 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI132/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429497
 2020-03-08 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI404/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429499
 2020-03-08 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI405/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_430128 MT627616
 2020-03-08 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S274/2020
 C241T C1059T C3037T C14408T A23403G G25563T G29553A

EPI_ISL_430270 MT632502
 2020-03-08 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S232/2020
 G2840A C8782T C17747T A17858G C18060T C23029T A26045G T28144C

EPI_ISL_430293 MT632575
 2020-03-08 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S255/2020
 G2840A C8782T C17747T A17858G C18060T A26045G T28144C

EPI_ISL_430862
 2020-03-08 2020-04-28
 Sweden hCoV-19/Sweden/20-50185/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_434127 MT632951
 2020-03-08 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S367/2020
 C8782T C17747T A17858G C18060T C18894T T28144C

EPI_ISL_436061 MT434794
 2020-03-08 2020-05-05
 United States SARS-CoV-2/human/USA/NY-CDC-SURV0319NYC/2020
 C241T C1059T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_436072 MT434816
 2020-03-08 2020-05-05
 United States SARS-CoV-2/human/USA/NY-CDC-SURV0592NYC/2020
 C241T ATG518- C1059T C6578T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_437244
 2020-03-08 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0045/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_437642
 2020-03-08 2020-05-11
 Denmark hCoV-19/Denmark/ALAB-SSI-133/2020
 C241T T658C C3037T C14408T A23403G A24862G C28629T

EPI_ISL_437647
 2020-03-08 2020-05-11
 Denmark hCoV-19/Denmark/ALAB-SSI-135/2020
 C241T C1059T C3037T C14408T G15380T A23403G G25563T

EPI_ISL_437648
 2020-03-08 2020-05-11
 Denmark hCoV-19/Denmark/ALAB-SSI-136/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_437649
 2020-03-08 2020-05-11
 Denmark hCoV-19/Denmark/ALAB-SSI-137/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_437650
 2020-03-08 2020-05-11
 Denmark hCoV-19/Denmark/ALAB-SSI-138/2020
 C241T C1059T C3037T A6133G C14408T G20419T A23403G G25563T C27707T

EPI_ISL_437896 MT459900
 2020-03-08 2020-05-11
 Greece SARS-CoV-2/human/GRC/237_31890/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T C18877T A23403G A24367G G25563T G25855T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_438018
 2020-03-08 2020-05-12
 Austria hCoV-19/Austria/CeMM0175/2020
 C241T G2809K C3037T G12832A C14408T T22521K A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_438019
 2020-03-08 2020-05-12
 Austria hCoV-19/Austria/CeMM0176/2020
 C241T C3037T G12832A C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAA29888-

EPI_ISL_438020
 2020-03-08 2020-05-12
 Austria hCoV-19/Austria/CeMM0177/2020
 C241T C3037T G12832A C14408T C20457T T22521K A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_438233
 2020-03-08 2020-05-12
 United States hCoV-19/USA/MD-HP00075/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_445247
 2020-03-08 2020-05-15
 Chile hCoV-19/Chile/Santiago_4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGA1- C8782T T9477A C14805T G25979T C27727A C28087Y T28144C A28416T C28657T C28863T GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_447840 MT472627
 2020-03-08 2020-05-14
 United States SARS-CoV-2/human/USA/DC-CDC-0019/2020
 C241T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_447844 MT472621
 2020-03-08 2020-05-14
 United States SARS-CoV-2/human/USA/PA-CDC-2908/2020
 C241T C3037T C14408T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_447845 MT472625
 2020-03-08 2020-05-14
 United States SARS-CoV-2/human/USA/PR-CDC-3578/2020
 C241T C3037T C5284Y T8647Y C11339Y T12629C C14408T C17649Y A23403G C25731Y C27161Y T29470A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_450119
 2020-03-08 2020-05-20
 United States hCoV-19/USA/NY-PV09442/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTT1- C241T C1059T C3037T G10523C C12119T C14408T C18086A A23403G G25563T TTAAAGTTTCCATTTGGAATCTTGATTACATCATA27266- AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450405 MT276600
 2020-03-08 2020-04-02
 China SARS-CoV-2/human/HKG/case113_VM2003179/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- G1595A C9962T C11704T T13929C C14724T T21584G G26144T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_451989
 2020-03-08 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-102/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_451990
 2020-03-08 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-104/2020
 C241T C3037T C14408T A23403G C23575T G23587C C24374T

EPI_ISL_452126 MT512426
 2020-03-08 2020-05-26
 United States SARS-CoV-2/human/USA/NC-CDC-0034/2020
 C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_452128 MT512428
 2020-03-08 2020-05-26
 United States SARS-CoV-2/human/USA/CO-CDC-5667/2020
 C8782Y G11583K A12787G C17747T A17858G C18060T A24694T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_452717
 2020-03-08 2020-05-27
 Spain hCoV-19/Spain/COV000805/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T C29870A

EPI_ISL_452738
 2020-03-08 2020-05-27
 Spain hCoV-19/Spain/COV000750/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T

EPI_ISL_454437
 2020-03-08 2020-05-28
 Sweden hCoV-19/Sweden/20-08042/2020
 C241T C3037T G11761T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_454438
 2020-03-08 2020-05-28
 Sweden hCoV-19/Sweden/20-08043/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_454478
 2020-03-08 2020-05-28
 Sweden hCoV-19/Sweden/20-08107/2020
 C241T C3037T C14408T G22583A A23403G

EPI_ISL_454485
 2020-03-08 2020-05-28
 Sweden hCoV-19/Sweden/20-08114/2020
 C241T C3037T C14408T C23086T A23403G C27046T GGG28881AAC

EPI_ISL_454495
 2020-03-08 2020-05-28
 Sweden hCoV-19/Sweden/20-08047/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC G29711T

EPI_ISL_454894
 2020-03-08 2020-05-29
 Sweden hCoV-19/Sweden/20-50248/2020
 C241T C3037T G12079A C14408T G15598T C16260T A23403G GGG28881AAC

EPI_ISL_454895
 2020-03-08 2020-05-29
 Sweden hCoV-19/Sweden/20-50252/2020
 C241T C3037T T9544C C14408T A23403G C26894T GGG28881AAC

EPI_ISL_455845
 2020-03-08 2020-06-01
 Sweden hCoV-19/Sweden/20-08179/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T

EPI_ISL_455878
 2020-03-08 2020-06-01
 Sweden hCoV-19/Sweden/20-50223/2020
 C241T C3037T C14408T A23403G

EPI_ISL_455884
 2020-03-08 2020-06-01
 Sweden hCoV-19/Sweden/20-50244/2020
 C241T C3037T C3373A C5654T C14408T A23403G C24034T GGG28881AAC

EPI_ISL_455887
 2020-03-08 2020-06-01
 Sweden hCoV-19/Sweden/20-50247/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_455888
 2020-03-08 2020-06-01
 Sweden hCoV-19/Sweden/20-50249/2020
 C241T C3037T C14408T A23403G C25782T GGG28881AAC

EPI_ISL_455891
 2020-03-08 2020-06-01
 Sweden hCoV-19/Sweden/20-50253/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_455895
 2020-03-08 2020-06-01
 Sweden hCoV-19/Sweden/20-50257/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_455896
 2020-03-08 2020-06-01
 Sweden hCoV-19/Sweden/20-50258/2020
 C241T C3037T C14408T G15598T A23403G GGG28881AAC

EPI_ISL_455904
 2020-03-08 2020-06-01
 Sweden hCoV-19/Sweden/20-50270/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_455906
 2020-03-08 2020-06-01
 Sweden hCoV-19/Sweden/20-50274/2020
 C241T C3037T C14408T A23403G C23575T G23587C

EPI_ISL_457826
 2020-03-08 2020-06-02
 Italy hCoV-19/Italy/AMC2-1245/2020
 ATTAAAGGTTTAT1- C241T C3037T C14408T A23403G A26530G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_460252 MT520327
 2020-03-08 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00435/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_460354 MT520429
 2020-03-08 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00444/2020
 ATTAAAGGTTTATACC1- C241T C2416T C3037T C14408T A23403G G25563T C27654T G29628T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_467950
 2020-03-08 2020-06-16
 United States hCoV-19/USA/CA-SR0415/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_467982
 2020-03-08 2020-06-16
 United States hCoV-19/USA/CA-SR0460/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_475548
 2020-03-08 2020-06-23
 Sweden hCoV-19/Sweden/20-08041/2020
 C14805T T17247C G26144T

EPI_ISL_475830
 2020-03-08 2020-06-25
 Austria hCoV-19/Austria/CeMM0390/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479791
 2020-03-08 2020-07-01
 Italy hCoV-19/Italy/FVG-ICGEB_S26/2020
 C241T C3037T C14408T G15708A A23403G T26463C

EPI_ISL_479819
 2020-03-08 2020-07-01
 Japan hCoV-19/Japan/PG-0056/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T G16381A T17877C T28144C G28878A G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479820
 2020-03-08 2020-07-01
 Japan hCoV-19/Japan/PG-0057/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C8782T G16381A T17877C T28144C G28878A G29742A AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_479822
 2020-03-08 2020-07-01
 Japan hCoV-19/Japan/PG-0060/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C8782T G16381A T17877C T28144C G28878A G29742A TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_479841
 2020-03-08 2020-07-01
 Japan hCoV-19/Japan/PG-0098/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- G11083T C11752T C19170A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479842
 2020-03-08 2020-07-01
 Japan hCoV-19/Japan/PG-0099/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C11752T C19170A G28857T TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_479918
 2020-03-08 2020-07-01
 Japan hCoV-19/Japan/PG-0218/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCT1- A2160G T4402C G5062T C8782T T28144C CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_479919
 2020-03-08 2020-07-01
 Japan hCoV-19/Japan/PG-0219/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- A2160G T4402C G5062T C8782T T28144C ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_485001
 2020-03-08 2020-07-09
 South Korea hCoV-19/South Korea/A2/2020
 ATTAAAGGTTTA1- C2232Y G5572T C9924T G11083T C14805T C24381T G26144T G27754T AAAAAAAAAAAAAAAAAAAAAA29882-

EPI_ISL_488228
 2020-03-08 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F6DB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- G19518T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488310
 2020-03-08 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F6EA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489987
 2020-03-08 2020-07-14
 Peru hCoV-19/Peru/INS-009/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAA1- C241T C3037T C14408T C15277T A21917G A23403G A26530G ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_492985
 2020-03-08 2020-07-20
 Italy hCoV-19/Italy/NegrarVR_6/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C3037T T3793C C14408T A16311G A23403G C23575T T29867A C29870A

EPI_ISL_495663 MT827203
 2020-03-08 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1488/2020
 ATTAAAGGTTT1- C8782T C9246T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_500399
 2020-03-08 2020-07-28
 Spain hCoV-19/Spain/COV005965/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C8782T C8980T T9477A C14805T G25979T T28144C C28657T C28863T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_506956
 2020-03-08 2020-08-02
 South Korea hCoV-19/Korea/KCDC2162/2020
 ATTAAAGG1- C241T G5572T G11083T C14805T C21575T G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_511891
 2020-03-08 2020-08-10
 Vietnam hCoV-19/Vietnam/VNHN_0207/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23403G GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_516079 MT483878
 2020-03-08 2020-05-18
 Italy SARS-CoV-2/human/ITA/32898/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T C3037T A3219G C14408T C20956Y A23403G A26530G GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_516633
 2020-03-08 2020-08-21
 Germany hCoV-19/Berlin/ChVir-D658-5/2020
 ATTAAAGGTTTAT1- C241T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_516641
 2020-03-08 2020-08-21
 Germany hCoV-19/Berlin/ChVir-W1191-13/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATC1- C241T C3037T C14408T A23403G ACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29761-

EPI_ISL_525586
 2020-03-08 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-11679-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T A26161- TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_525587
 2020-03-08 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-11681-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_525588
 2020-03-08 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-11690-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_525589
 2020-03-08 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-11719-01/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T C1059T C3037T C8770Y C14408T A14480G A23403G G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_525590
 2020-03-08 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-11789-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_527955
 2020-03-08 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42181327/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G AAAAAAAAA29895-

EPI_ISL_529034
 2020-03-08 2020-09-09
 United States hCoV-19/USA/NY-Wadsworth-11661-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T T20961C A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_530033
 2020-03-08 2020-09-10
 Spain hCoV-19/Spain/MD-LP104-3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1758T A1788C C3037T C14408T C18131T A20268G A23403G G28027C G29734C ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_538267 MW010248
 2020-03-08 2020-09-16
 United States SARS-CoV-2/human/USA/MD-MDH-0183/2020
 C241T GTTATG515- C884T C3037T C14408T C18877T A23403G G25563T T29867A C29870G

EPI_ISL_539515
 2020-03-08 2020-09-18
 Spain hCoV-19/Spain/AR-ISCIII-201782/2020
 G11083T C18326T G26144T

EPI_ISL_539516
 2020-03-08 2020-09-18
 Spain hCoV-19/Spain/AR-ISCIII-201784/2020
 T7991C G11083T G26144T

EPI_ISL_539517
 2020-03-08 2020-09-18
 Spain hCoV-19/Spain/AR-ISCIII-201848/2020
 G11071C G11083T C13134G G19872T

EPI_ISL_547457
 2020-03-08 2020-09-24
 Netherlands hCoV-19/Netherlands/FR-RIVM-10083/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T1570C G11083T C14805T T17247C G26144T G28086T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547458
 2020-03-08 2020-09-24
 Netherlands hCoV-19/Netherlands/FR-RIVM-10084/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T1570C G11083T C14805T T17247C G26144T G28086T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547460
 2020-03-08 2020-09-24
 Netherlands hCoV-19/Netherlands/GE-RIVM-10088/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T18513C A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566049
 2020-03-08 2020-10-01
 United Kingdom hCoV-19/England/201100832/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T G15438K A23403G GGG28881AAC GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

MT325572
 2020-03-08 2020-04-10
 United States SARS-CoV-2/human/USA/GA_2118/2020
 T490A C3177T C8782T G14118A T18736C C24034T T26729C G28077C T28144C A29700G AAAAAAAAAAAAAAAAAAAAA29883-

MT325576
 2020-03-08 2020-04-10
 United States SARS-CoV-2/human/USA/IA_6394/2020
 C241T T3011C C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAA29883-

MT325589
 2020-03-08 2020-04-10
 United States SARS-CoV-2/human/USA/NC_0024/2020
 C241T C2416T C3037T C14408T G14707K A23403G G25563T G26233T G28812K AAAAAAAAAAAAAAAAAAAAA29883-

MT325598
 2020-03-08 2020-04-10
 United States SARS-CoV-2/human/USA/OH_0023/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MT325602
 2020-03-08 2020-04-10
 United States SARS-CoV-2/human/USA/PA_2937/2020
 C241T C2416T C3037T C14408T T15393Y A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MT325608
 2020-03-08 2020-04-10
 United States SARS-CoV-2/human/USA/SC_6370/2020
 T490A C3177T C6525Y C8782T C8956T C17074Y T18736C C24034T T26729C G28077C T28144C A29700G AAAAAAAAAAAAAAAAAAAAA29883-

MT325611
 2020-03-08 2020-04-10
 United States SARS-CoV-2/human/USA/VA_6352/2020
 C241T C3037T C14408T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MT325612
 2020-03-08 2020-04-10
 United States SARS-CoV-2/human/USA/VA_6377/2020
 C241T C3037T C14408T GG18505RK C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MT325613
 2020-03-08 2020-04-10
 United States SARS-CoV-2/human/USA/VA_6382/2020
 C8782T C17747T A17858G C18060T G18756K T28144C AAAAAAAAAAAAAAAAAAAAA29883-

MT325614
 2020-03-08 2020-04-10
 United States SARS-CoV-2/human/USA/VA_6389/2020
 C241T C3037T G11417T C14408T A23403G AAAAAAAAAAAAAAAAAAAAA29883-

MT325617
 2020-03-08 2020-04-10
 United States SARS-CoV-2/human/USA/IA_6396/2020
 C241T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAA29883-

MT325618
 2020-03-08 2020-04-10
 United States SARS-CoV-2/human/USA/IA_6395/2020
 C241T T3011C C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAA29883-

MT325619
 2020-03-08 2020-04-10
 United States SARS-CoV-2/human/USA/IA_6401/2020
 C241T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAA29883-

MT325620
 2020-03-08 2020-04-10
 United States SARS-CoV-2/human/USA/IA_6399/2020
 C241T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAA29883-

MT509474
 2020-03-08 2020-05-22
 United States SARS-CoV-2/human/USA/MD-HP00075/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT810552
 2020-03-08 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0415-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C8782T C17747T A17858G C18060T T28144C CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810580
 2020-03-08 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0460-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C8782T C17747T A17858G C18060T T28144C CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_414544 LR878330
 2020-03-09 2020-03-13
 Netherlands hCoV-19/Netherlands/NoordBrabant_35/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- G2198A C6255T C10456T C17410T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_414590 MT188339
 2020-03-09 2020-03-13
 United States USA/MN3-MDH3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1102T C8782T C17747T A17858G C18060T T21147C C21386T C22432T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_415460 LR878335
 2020-03-09 2020-03-17
 Netherlands hCoV-19/Netherlands/Flevoland_1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C1059T C3037T C14408T A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415462 LR878318
 2020-03-09 2020-03-17
 Netherlands hCoV-19/Netherlands/Gelderland_2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T C14408T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415463 LR878331
 2020-03-09 2020-03-17
 Netherlands hCoV-19/Netherlands/Gelderland_3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415466 LR878215
 2020-03-09 2020-03-17
 Netherlands hCoV-19/Netherlands/NA_10/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C1059T C3037T C14408T A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415473 LR878350
 2020-03-09 2020-03-17
 Netherlands hCoV-19/Netherlands/NA_17/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C1594T C3037T C11109T C14408T A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415474 LR878352
 2020-03-09 2020-03-17
 Netherlands hCoV-19/Netherlands/NA_18/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C1594T C3037T C11109T C14408T A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415480 LR878092
 2020-03-09 2020-03-17
 Netherlands hCoV-19/Netherlands/NA_23/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T G4255T C5284T C14408T T16456G C20051T A23403G C24117T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415482 LR878086
 2020-03-09 2020-03-17
 Netherlands hCoV-19/Netherlands/NA_25/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T C14408T A23403G G25855T C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415483 LR878109
 2020-03-09 2020-03-17
 Netherlands hCoV-19/Netherlands/NA_26/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T C10741T C14408T A23403G C27046T C28344A GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415496 LR878357
 2020-03-09 2020-03-17
 Netherlands hCoV-19/Netherlands/NA_7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415497 LR878216
 2020-03-09 2020-03-17
 Netherlands hCoV-19/Netherlands/NA_8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T C14408T C22277A A23403G C27046T GGG28881AAC G29290T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415498 LR878217
 2020-03-09 2020-03-17
 Netherlands hCoV-19/Netherlands/NA_9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T C14408T A23403G C27046T C28344A GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415502 LR878339
 2020-03-09 2020-03-17
 Netherlands hCoV-19/Netherlands/NoordBrabant_45/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415508 LR878355
 2020-03-09 2020-03-17
 Netherlands hCoV-19/Netherlands/NoordBrabant_52/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- T514C ATG1605- TCA12620- C17410T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415510 LR878354
 2020-03-09 2020-03-17
 Netherlands hCoV-19/Netherlands/NoordBrabant_54/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- T514C ATG518- G1018A ATG1605- C16762T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415511 LR878337
 2020-03-09 2020-03-17
 Netherlands hCoV-19/Netherlands/NoordBrabant_55/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T C14408T C22277A A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415512 LR878320
 2020-03-09 2020-03-17
 Netherlands hCoV-19/Netherlands/NoordBrabant_56/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- T1570C G11083T C14805T T17247C T21462C G26144T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415529 LR878333
 2020-03-09 2020-03-17
 Netherlands hCoV-19/Netherlands/ZuidHolland_25/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415530 LR878327
 2020-03-09 2020-03-17
 Netherlands hCoV-19/Netherlands/ZuidHolland_26/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T C14408T C22277A A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415531 LR878323
 2020-03-09 2020-03-17
 Netherlands hCoV-19/Netherlands/ZuidHolland_27/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- G1440A G2891A C7011T C23996T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415532 LR878328
 2020-03-09 2020-03-17
 Netherlands hCoV-19/Netherlands/ZuidHolland_28/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T C14408T A23403G T25187C G28300T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415533 LR878322
 2020-03-09 2020-03-17
 Netherlands hCoV-19/Netherlands/ZuidHolland_29/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415592 MT252787
 2020-03-09 2020-03-18
 United States SARS-CoV-2/human/USA/WA-UW64/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATA1- C8782T T16242C C17747T A17858G C18060T T28144C G29628T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_415595 MT252793
 2020-03-09 2020-03-18
 United States SARS-CoV-2/human/USA/WA-UW67/2020
 ATTAAA1- GGT7AAC T11A C8782T C17747T A17858G C18060T T28144C C29870A A29903G

EPI_ISL_415596 MT252788
 2020-03-09 2020-03-18
 United States SARS-CoV-2/human/USA/WA-UW68/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAA1- C8782T C17747T A17858G C18060T T23010C T28144C TG29867AA

EPI_ISL_415600 MT252789
 2020-03-09 2020-03-18
 United States SARS-CoV-2/human/USA/WA-UW72/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTG1- C5784T C8782T C9836T C17747T A17858G C18060T T28144C C28344T A29866V A29869T

EPI_ISL_415607 MT252803
 2020-03-09 2020-03-18
 United States SARS-CoV-2/human/USA/WA-UW42/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- T150C T153G A3635G C8782T T15849C C17747T A17858G C18060T T28144C AAAAAAA29897-

EPI_ISL_415611 MT252806
 2020-03-09 2020-03-18
 United States SARS-CoV-2/human/USA/WA-UW46/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C8782T C17747T A17858G C18060T T27384C T28144C -29904ANANANANA

EPI_ISL_415612 MT252807
 2020-03-09 2020-03-18
 United States SARS-CoV-2/human/USA/WA-UW47/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- AACC34HWTH C1419T C8782T G14126A C17747T A17858G C18060T T28144C -29904ANANANADA

EPI_ISL_415613 MT252808
 2020-03-09 2020-03-18
 United States SARS-CoV-2/human/USA/WA-UW48/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C8782T C17747T A17858G C18060T T28144C -29904ANANAAVC

EPI_ISL_415614 MT252809
 2020-03-09 2020-03-18
 United States SARS-CoV-2/human/USA/WA-UW49/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCT1- C8782T C17747T A17858G C18060T T28144C CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_415617 MT252815
 2020-03-09 2020-03-18
 United States SARS-CoV-2/human/USA/WA-UW52/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAA1- C8782T C17747T A17858G C18060T T28144C A29869H A29903-

EPI_ISL_415619 MT252813
 2020-03-09 2020-03-18
 United States SARS-CoV-2/human/USA/WA-UW54/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C8782T C17747T A17858G C18060T T28144C -29904ANANANANANA

EPI_ISL_415620 MT252814
 2020-03-09 2020-03-18
 United States SARS-CoV-2/human/USA/WA-UW55/2020
 ATTAAAGGTTTATACCTT1- G8083T C8782T C17747T A17858G C18060T T27384C T28144C -29904ANANANANA

EPI_ISL_415621 MT252812
 2020-03-09 2020-03-18
 United States SARS-CoV-2/human/USA/WA-UW56/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAA1- C8782T C12915T C17747T A17858G C18060T T28144C A29903-

EPI_ISL_415622 MT252816
 2020-03-09 2020-03-18
 United States SARS-CoV-2/human/USA/WA-UW57/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAA1- C8782T C17747T A17858G C18060T C21380T T28144C GA29868CT

EPI_ISL_415624 MT252818
 2020-03-09 2020-03-18
 United States SARS-CoV-2/human/USA/WA-UW59/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAA1- C6310T C8782T C17747T A17858G C18060T G27327T T28144C AA29902-

EPI_ISL_415625 MT252820
 2020-03-09 2020-03-18
 United States SARS-CoV-2/human/USA/WA-UW60/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C1059T C3037T C14408T A23403G G25563T G29553A A29865C GA29868CT AA29902-

EPI_ISL_415627 MT252817
 2020-03-09 2020-03-18
 United States SARS-CoV-2/human/USA/WA-UW62/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAAC19- C37T C4754T G8602A C8782T C17747T A17858G C18060T G26152A T28144C

EPI_ISL_415630
 2020-03-09 2020-03-18
 United Kingdom hCoV-19/Scotland/CVR07/2020
 A2480G C2558T C2918T C5340T G11083T C14805T G26144T

EPI_ISL_415654
 2020-03-09 2020-03-18
 France hCoV-19/France/HF2174/2020
 C241T C2416T C3037T A12745G C14408T C20234T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_416682 MT252760
 2020-03-09 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW144/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGC1- C8782T C17403T C17747T A17858G C18060T G22984A T27384C T28144C A29903-

EPI_ISL_416734
 2020-03-09 2020-03-23
 United Kingdom hCoV-19/England/SHEF-BFCFD/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_416739
 2020-03-09 2020-03-23
 United Kingdom hCoV-19/England/SHEF-BFD45/2020
 G431A C20270T A29683T

EPI_ISL_417311
 2020-03-09 2020-03-25
 United Kingdom hCoV-19/England/20110058706/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_417389
 2020-03-09 2020-03-25
 Australia hCoV-19/Australia/NSW26/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1397A C2113T A9483G G11083T C18928T G24227A T28688C G29374A G29742T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417520 MT374103
 2020-03-09 2020-03-27
 Taiwan SARS-CoV-2/human/TWN/CGMH-CGU-07/2020
 ATTAAAGGTTT1- C1059T G1397A G11083T C19547T C23934T T28648C T28688C G29742T AAAAAA29898-

EPI_ISL_417861
 2020-03-09 2020-03-27
 Iceland hCoV-19/Iceland/73/2020
 C241T C842T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_417862
 2020-03-09 2020-03-27
 Iceland hCoV-19/Iceland/77/2020
 C241T C3037T C14408T A23403G C27046T C28344A GGG28881AAC

EPI_ISL_417863
 2020-03-09 2020-03-27
 Iceland hCoV-19/Iceland/78/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_417865
 2020-03-09 2020-03-27
 Iceland hCoV-19/Iceland/80/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_417866
 2020-03-09 2020-03-27
 Iceland hCoV-19/Iceland/81/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_417867
 2020-03-09 2020-03-27
 Iceland hCoV-19/Iceland/82/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC T29104C

EPI_ISL_417868
 2020-03-09 2020-03-27
 Iceland hCoV-19/Iceland/83/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_417952
 2020-03-09 2020-03-27
 Spain hCoV-19/Spain/Madrid_H2_16/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- G11083T G26144T CCAATGGAGATTGAT27370- AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_417969
 2020-03-09 2020-03-27
 Spain hCoV-19/Spain/Madrid_LP10_12/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T A361G C3037T A9204G A20268G A21352G CA22006AC A23403G C26456T T27740C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_417972
 2020-03-09 2020-03-27
 Spain hCoV-19/Spain/Madrid_LP12_21/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T T18099C A23403G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_417975
 2020-03-09 2020-03-27
 Spain hCoV-19/Spain/Madrid_LP14_3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- G11083T C14805T T17247C G26144T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_417978
 2020-03-09 2020-03-27
 Spain hCoV-19/Spain/Madrid_LP15_4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C6286T C14408T A20268G A23403G C24422A AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_418014
 2020-03-09 2020-03-28
 Portugal hCoV-19/Portugal/PT0029/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G C25791T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_418015
 2020-03-09 2020-03-28
 Portugal hCoV-19/Portugal/PT0030/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G C25791T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_418226
 2020-03-09 2020-03-29
 France hCoV-19/France/HF2381/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418339
 2020-03-09 2020-03-09
 Canada hCoV-19/Canada/ON_PHL3877/2020
 A1- C8782T T10771C C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418340
 2020-03-09 2020-03-09
 Canada hCoV-19/Canada/ON_PHL1083/2020
 A1- C6990T C8782T T10771C C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418353
 2020-03-09 2020-03-09
 Canada hCoV-19/Canada/ON_PHL0539/2020
 A1- C241T C2416T C3037T A5937C C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418668
 2020-03-09 2020-03-30
 United Kingdom hCoV-19/England/20110136302/2020
 C241T C2416T C3037T C14408T G20578T A23403G G25563T

EPI_ISL_418819
 2020-03-09 2020-03-31
 Canada hCoV-19/Canada/BC_3808524/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_418820
 2020-03-09 2020-03-31
 Canada hCoV-19/Canada/BC_3842755/2020
 C8782T C14724T C17747T A17858G C18060T T28144C

EPI_ISL_418823
 2020-03-09 2020-03-31
 Canada hCoV-19/Canada/BC_3989992/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_418830
 2020-03-09 2020-03-31
 Canada hCoV-19/Canada/BC_4799711/2020
 C5170T C8782T C16468T T17673C A17858G C18060T T28144C

EPI_ISL_418982
 2020-03-09 2020-03-31
 Belgium hCoV-19/Belgium/HAA-030953/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_418983
 2020-03-09 2020-03-31
 Belgium hCoV-19/Belgium/DWAEE-030954/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10741T C14408T A23403G C27046T C28344A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_418984
 2020-03-09 2020-03-31
 Belgium hCoV-19/Belgium/BG-030955/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A13947T C14408T C21676T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_418985
 2020-03-09 2020-03-31
 Belgium hCoV-19/Belgium/LT-030956/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T G29291A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_419261 MT322402
 2020-03-09 2020-04-08
 United States SARS-CoV-2/human/USA/VA-DCLS-0009/2020
 ATTAA1- C241T C3037T C14408T C18877T A23403G G25563T C29870A

EPI_ISL_419262 MT322403
 2020-03-09 2020-04-08
 United States SARS-CoV-2/human/USA/VA-DCLS-0010/2020
 ATTAAAGGTTT1- C8782T C17747T A17858G C18060T G18756T T28144C AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_419299 LC547521
 2020-03-09 2020-04-02
 Japan hCoV-19/Japan/P3-1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C3037T C4321T C14408T C18877T A23403G G25563T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_419676
 2020-03-09 2020-04-03
 Spain hCoV-19/Spain/Valencia12/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_419677
 2020-03-09 2020-04-03
 Spain hCoV-19/Spain/Valencia13/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_419678
 2020-03-09 2020-04-03
 Spain hCoV-19/Spain/Valencia14/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T9477A C14805T G24928T G25979T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_419740 MT450936
 2020-03-09 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC21/2020
 ATTA1- A2480G C2558T T6971C G6975T G6977A C9170T G11083T C14805T G26144T C26464T

EPI_ISL_419742 MT450937
 2020-03-09 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC22/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C1059T C3037T C6638T C14408T A20755C A23403G G25563T

EPI_ISL_419743 MT450938
 2020-03-09 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC23/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- A2480G C2558T T6971C G6975T G6977A C9170T G11083T C14805T G26144T

EPI_ISL_420107
 2020-03-09 2020-04-05
 Singapore hCoV-19/Singapore/30/2020
 ATTAAAGGTTTATACCTTCCCAG1- C8782T G18040T ACTTGAACTGCAAGATCATAATGAAACTTGTCACGCCTAAACGAACATGAAATTTCTTGTTTTCTTAGGAATCATCACAACTGTAGCTGCATTTCACCAAGAATGTAGTTTACAGTCATGTACTCAACATCAACCATATGTAGTTGATGACCCGTGTCCTATTCACTTCTATTCTAAATGGTATATTAGAGTAGGAGCTAGAAAATCAGCACCTTTAATTGAATTGTGCGTGGATGAGGCTGGTTCTAAATCACCCATTCAGTACATCGATATCGGTAATTATACAGTTTCCTGTTTACCTTTTACAATTAATTGCCAGGAACCTAAATTGGGTAGTCTTGTAGTGCGTTGTTCGTTCTATGAAGACTTTTTAGAGTATCAT27848- TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_420112
 2020-03-09 2020-04-05
 Spain hCoV-19/Spain/Valencia27/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420113
 2020-03-09 2020-04-05
 Spain hCoV-19/Spain/Valencia28/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C8782T T9477A C14805T C20582T G25979T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420114
 2020-03-09 2020-04-05
 Spain hCoV-19/Spain/Valencia29/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C8782T T9477A C14805T C21697T G25979T T28144C C28657T C28863T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_420115
 2020-03-09 2020-04-05
 Spain hCoV-19/Spain/Valencia30/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C1707T C8782T T9477A C14805T C20801T G25979T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420116
 2020-03-09 2020-04-05
 Spain hCoV-19/Spain/Valencia31/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420117
 2020-03-09 2020-04-05
 Spain hCoV-19/Spain/Valencia32/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420118
 2020-03-09 2020-04-05
 Spain hCoV-19/Spain/Valencia33/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420119
 2020-03-09 2020-04-05
 Spain hCoV-19/Spain/Valencia34/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_420120
 2020-03-09 2020-04-05
 Spain hCoV-19/Spain/Valencia35/2020
 ATTA1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_420121
 2020-03-09 2020-04-05
 Spain hCoV-19/Spain/Valencia36/2020
 ATTAAAGGTT1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420122
 2020-03-09 2020-04-05
 Spain hCoV-19/Spain/Valencia37/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420123
 2020-03-09 2020-04-05
 Spain hCoV-19/Spain/Valencia38/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420124
 2020-03-09 2020-04-05
 Spain hCoV-19/Spain/Valencia39/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420145
 2020-03-09 2020-04-05
 Norway hCoV-19/Norway/1951/2020
 ATTAAAGGTT1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_420150
 2020-03-09 2020-04-05
 Norway hCoV-19/Norway/2084/2020
 ATTAAAGGT1- C241T A761G C1059T C3037T A6825C C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_420320
 2020-03-09 2020-04-06
 Belgium hCoV-19/Belgium/030959/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C8394T C12260G C14408T C15324T A23403G A28804G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_420338
 2020-03-09 2020-04-06
 Belgium hCoV-19/Belgium/AC-030982/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420346
 2020-03-09 2020-04-06
 Belgium hCoV-19/Belgium/SB-030990/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T A13947T A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_420445
 2020-03-09 2020-04-06
 Belgium hCoV-19/Belgium/FAE-030948/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G C25433T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420452
 2020-03-09 2020-04-06
 Belgium hCoV-19/Belgium/RDC-030961/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420890 LC534419
 2020-03-09 2020-03-19
 Japan SARS-CoV-2/Hu/Kng/19-437
 ATTAAAGGTTTA1- T13C C11752T G29140T AAAAAAAAAAAAAAAAA29887-

EPI_ISL_421172
 2020-03-09 2020-04-07
 Spain hCoV-19/Spain/Madrid_H12_1502/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6248C C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_422642 LR877927
 2020-03-09 2020-04-11
 Netherlands hCoV-19/Netherlands/Gelderland_6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422809 LR878150
 2020-03-09 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_48/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T T17247C G26144T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422821 LR878143
 2020-03-09 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_60/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T T17247C G26144T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422822 LR878139
 2020-03-09 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_61/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4255T C14408T A23403G A26530G A29419G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422823 LR878148
 2020-03-09 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_62/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422827 LR878153
 2020-03-09 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_67/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- C14768T G29000T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422837 LR878157
 2020-03-09 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_77/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- C17410T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422862 LR878204
 2020-03-09 2020-04-11
 Netherlands hCoV-19/Netherlands/NoordBrabant_103/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C14583T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422863 LR878199
 2020-03-09 2020-04-11
 Netherlands hCoV-19/Netherlands/NoordBrabant_104/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422870 LR877742
 2020-03-09 2020-04-11
 Netherlands hCoV-19/Netherlands/NoordBrabant_74/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422871 LR877743
 2020-03-09 2020-04-11
 Netherlands hCoV-19/Netherlands/NoordBrabant_75/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- C17410T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422872 LR877751
 2020-03-09 2020-04-11
 Netherlands hCoV-19/Netherlands/NoordBrabant_76/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422879 LR877761
 2020-03-09 2020-04-11
 Netherlands hCoV-19/Netherlands/NoordBrabant_85/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422880 LR877767
 2020-03-09 2020-04-11
 Netherlands hCoV-19/Netherlands/NoordBrabant_86/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C23638T C28139A GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422881 LR877764
 2020-03-09 2020-04-11
 Netherlands hCoV-19/Netherlands/NoordBrabant_87/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- C22498T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_424054
 2020-03-09 2020-04-12
 United Kingdom hCoV-19/England/20129059204/2020
 C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_424848
 2020-03-09 2020-04-13
 United States hCoV-19/USA/AZ_8132/2020
 C8782T A16628G C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424849
 2020-03-09 2020-04-13
 United States hCoV-19/USA/AZ_8135/2020
 C8782T C17747T A17858G C18060T G18197R T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424866
 2020-03-09 2020-04-13
 United States hCoV-19/USA/IN_2001/2020
 C241T C3037T C14408T GG18505RK A23403G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424868
 2020-03-09 2020-04-13
 United States hCoV-19/USA/LA_0842/2020
 C241T C1059T C3037T C10319T A14012T C14408T C17894T A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424879
 2020-03-09 2020-04-13
 United States hCoV-19/USA/NV_0052/2020
 A2480G C2558T A4912C G11083T C14805T C17010A C21575T G26144T A27151R AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424885
 2020-03-09 2020-04-13
 United States hCoV-19/USA/PA_4395/2020
 C241T C3037T C14408T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_425799
 2020-03-09 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR68/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC G29540T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_425801
 2020-03-09 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR70/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A26530G C27524T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425809
 2020-03-09 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR79/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C23575T G23587C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_425845
 2020-03-09 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB039/2020
 C241T A23403G

EPI_ISL_426424 MT344952
 2020-03-09 2020-04-15
 United States SARS-CoV-2/human/USA/IN_92003/2020
 C203Y C241T C2416T C3037T A4364M C14408T A23403G C25169T G25563T CGAGGCCACGCGGAGTACGAT29733- AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426435 MT344960
 2020-03-09 2020-04-15
 United States SARS-CoV-2/human/USA/RI_0882/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_428674
 2020-03-09 2020-04-21
 Spain hCoV-19/Spain/Madrid_LP11_2271/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C8782T G11083T A23403G C26088T G26144T T28144C TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_428675
 2020-03-09 2020-04-21
 Spain hCoV-19/Spain/Madrid_LP16_6193/2020
 ATTAAAGGTTTATACCTTCCCAG1- C8782T A23403G C26088T T28144C TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_428680
 2020-03-09 2020-04-21
 Spain hCoV-19/Spain/Madrid_LP24_5999/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A20268G A23403G G29734C -29826T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_428699
 2020-03-09 2020-04-21
 Spain hCoV-19/Spain/Madrid_H12_36/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C4540T C8782T T9477A C14805T G25979T T28144C C28657T C28863T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_429155
 2020-03-09 2020-04-23
 Sweden hCoV-19/Sweden/20-50230/2020
 C241T C2416T C3037T C14408T A23403G G25563T

EPI_ISL_429156
 2020-03-09 2020-04-23
 Sweden hCoV-19/Sweden/20-50232/2020
 C241T C3037T A12790G C13568T C14408T A23403G

EPI_ISL_429343
 2020-03-09 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI111/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429345
 2020-03-09 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI114/2020
 C241T C1059T C3037T C14408T A23403G G25563T G29705T

EPI_ISL_429358
 2020-03-09 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI139/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429360
 2020-03-09 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI142/2020
 G1440A G2891A C7011T

EPI_ISL_429361
 2020-03-09 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI143/2020
 C241T C1059T C3037T C14408T C18377T A23403G G25563T

EPI_ISL_429364
 2020-03-09 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI146/2020
 C241T C1059T C3037T A6825C C14408T A23403G G25563T

EPI_ISL_429368
 2020-03-09 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI150/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429369
 2020-03-09 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI151/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429370
 2020-03-09 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI154/2020
 C241T C1059T C3037T C14408T G17314A A23403G G25563T

EPI_ISL_429373
 2020-03-09 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI157/2020
 G1440A G2891A C7011T

EPI_ISL_429374
 2020-03-09 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI158/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429375
 2020-03-09 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI159/2020
 C241T C1059T C3037T C3743T C14408T A23403G G25563T

EPI_ISL_429376
 2020-03-09 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI160/2020
 C241T C1059T C3037T C3743T C14408T A23403G G25563T

EPI_ISL_429377
 2020-03-09 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI162/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429378
 2020-03-09 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI163/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429379
 2020-03-09 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI164/2020
 C241T C1059T C3037T C14408T G15380T A23403G G25563T

EPI_ISL_429381
 2020-03-09 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI167/2020
 C241T C1059T C3037T A6825C C14408T A23403G G25563T

EPI_ISL_429382
 2020-03-09 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI168/2020
 C241T C1059T C3037T C14408T C19263T A23403G G25563T

EPI_ISL_429383
 2020-03-09 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI169/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429384
 2020-03-09 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI171/2020
 C241T C1059T C3037T A6825C C14408T A23403G G25563T

EPI_ISL_429385
 2020-03-09 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI172/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429386
 2020-03-09 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI173/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429387
 2020-03-09 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI174/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429395
 2020-03-09 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI194/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429396
 2020-03-09 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI195/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429399
 2020-03-09 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI201/2020
 C241T C3037T C14408T A23403G G27163T G28329T

EPI_ISL_429402
 2020-03-09 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI204/2020
 C241T C1059T C3037T C14408T A23403G G25563T C29509T

EPI_ISL_429414
 2020-03-09 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI235/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_429495
 2020-03-09 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI402/2020
 C241T C1059T C3037T C14408T G15380T A23403G G25563T

EPI_ISL_429667
 2020-03-09 2020-04-24
 Brazil hCoV-19/Brazil/CV4/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C3037T C14408T C18877T A23403G G25563T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_429806
 2020-03-09 2020-04-24
 Canada hCoV-19/Canada/NB_1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G C25433T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_430134
 2020-03-09 2020-04-26
 United States hCoV-19/USA/WA-S280/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_430720
 2020-03-09 2020-04-27
 Spain hCoV-19/Spain/Madrid-LP32/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T A20268G A23403G G29734C TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859G

EPI_ISL_430863
 2020-03-09 2020-04-28
 Sweden hCoV-19/Sweden/20-50231/2020
 C241T C2416T C3037T C14408T A23403G G25563T

EPI_ISL_434126 MT632990
 2020-03-09 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S366/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434455
 2020-03-09 2020-04-29
 Greece hCoV-19/Greece/133/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C6312G C14408T C18877T A23403G G25563T G29861T GAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29864T

EPI_ISL_434484
 2020-03-09 2020-04-29
 Greece hCoV-19/Greece/148/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGG28881AAC TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_434744
 2020-03-09 2020-05-01
 United States hCoV-19/USA/TX-HMH035/2020
 C241T C1059T C3037T C14408T A23403G G23755T G25563T

EPI_ISL_434745
 2020-03-09 2020-05-01
 United States hCoV-19/USA/TX-HMH036/2020
 C241T C1059T C3037T C14408T A23403G G23755T G25563T

EPI_ISL_434753
 2020-03-09 2020-05-01
 United States hCoV-19/USA/TX-HMH044/2020
 C241T C1059T C3037T C14408T C21648T A23403G G25563T

EPI_ISL_435308
 2020-03-09 2020-05-04
 Vietnam hCoV-19/Vietnam/VNHN_0299/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T C3037T C14408T A23403G GGG28881AAC AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_435310
 2020-03-09 2020-05-04
 Vietnam hCoV-19/Vietnam/VNHN_0300/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C6027T C14408T A23403G GGG28881AAC GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_435621
 2020-03-09 2020-05-05
 United States hCoV-19/USA/CA-SCCPHD-UC142/2020
 A25443C

EPI_ISL_436049 MT434787
 2020-03-09 2020-05-05
 United States SARS-CoV-2/human/USA/NY-CDC-SURV0097NYC/2020
 C1625T C14805T T17247C G26144T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_436051 MT434788
 2020-03-09 2020-05-05
 United States SARS-CoV-2/human/USA/NY-CDC-SURV0162NYC/2020
 C241T C1059T C10851T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_436052 MT434783
 2020-03-09 2020-05-05
 United States SARS-CoV-2/human/USA/NY-CDC-SURV0165NYC/2020
 C1625T A10155R G11083T C12992T A13265T C14805T T17247C G26144T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_436053 MT434784
 2020-03-09 2020-05-05
 United States SARS-CoV-2/human/USA/NY-CDC-SURV0166NYC/2020
 C1625T G11083T A13265T C14805T T17247C G26144T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_436054 MT434814
 2020-03-09 2020-05-05
 United States SARS-CoV-2/human/USA/NY-CDC-SURV0168NYC/2020
 C1625T G11083T A13265T C14805T T17247C G26144T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_436055 MT434789
 2020-03-09 2020-05-05
 United States SARS-CoV-2/human/USA/NY-CDC-SURV0171NYC/2020
 C241T C2592A C14408T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_436056 MT434815
 2020-03-09 2020-05-05
 United States SARS-CoV-2/human/USA/NY-CDC-SURV0175NYC/2020
 C241T C1059T C14408T A23403G G25563T C27549T GCAAACTGT29440- T29726W AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_436060 MT434793
 2020-03-09 2020-05-05
 United States SARS-CoV-2/human/USA/NY-CDC-SURV0302NYC/2020
 C241T C1059T C11916T C14408T C18998T A23403G G25563T G29540A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_436062 MT434795
 2020-03-09 2020-05-05
 United States SARS-CoV-2/human/USA/NY-CDC-SURV0331NYC/2020
 C241T C1059T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_436063 MT434796
 2020-03-09 2020-05-05
 United States SARS-CoV-2/human/USA/NY-CDC-SURV0334NYC/2020
 C241T C14408T A20268G A23403G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_436066 MT434798
 2020-03-09 2020-05-05
 United States SARS-CoV-2/human/USA/NY-CDC-SURV0440NYC/2020
 C241T C1059T C11916T C14408T C18998T A23403G G25563T G29540A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_436067 MT434799
 2020-03-09 2020-05-05
 United States SARS-CoV-2/human/USA/NY-CDC-SURV0444NYC/2020
 C241T C1059T C14408T C21846T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_436068 MT434800
 2020-03-09 2020-05-05
 United States SARS-CoV-2/human/USA/NY-CDC-SURV0472NYC/2020
 C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_436069 MT434801
 2020-03-09 2020-05-05
 United States SARS-CoV-2/human/USA/NY-CDC-SURV0475NYC/2020
 C241T C1059T C10851T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_436076 MT434807
 2020-03-09 2020-05-05
 United States SARS-CoV-2/human/USA/NY-CDC-SURV0874NYC/2020
 C5730T C14805T T17247C G18985T G26144T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_436963
 2020-03-09 2020-05-08
 Denmark hCoV-19/Denmark/ALAB-SSI-197/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_437913
 2020-03-09 2020-05-12
 Austria hCoV-19/Austria/CeMM0023/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_437914
 2020-03-09 2020-05-12
 Austria hCoV-19/Austria/CeMM0024/2020
 C241T C1059T C3037T C14408T T22521K A23403G G25563T ACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29695-

EPI_ISL_437915
 2020-03-09 2020-05-12
 Austria hCoV-19/Austria/CeMM0025/2020
 C241T C1059T C3037T C14408T G21204T A23403G G25563T G29511T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_437917
 2020-03-09 2020-05-12
 Austria hCoV-19/Austria/CeMM0028/2020
 C241T C1059T C3037T C14408T G15380T T22521K A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_437918
 2020-03-09 2020-05-12
 Austria hCoV-19/Austria/CeMM0029/2020
 C241T C1059T C3037T C3992Y G3994K A10037M C14408T T22521K A23403G C25509T G25563T ACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29695-

EPI_ISL_437919
 2020-03-09 2020-05-12
 Austria hCoV-19/Austria/CeMM0030/2020
 C241T C1059T C3037T C14408T T22521K A23403G G25563T G29783T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_437920
 2020-03-09 2020-05-12
 Austria hCoV-19/Austria/CeMM0031/2020
 C241T C1059T C3037T C14408T T22521K A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_437925
 2020-03-09 2020-05-12
 Austria hCoV-19/Austria/CeMM0036/2020
 C241T C1059T C3037T C14408T G20419T T22521K A23403G G25563T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_437926
 2020-03-09 2020-05-12
 Austria hCoV-19/Austria/CeMM0037/2020
 C241T C1059T C3037T C14408T T22521K A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_437927
 2020-03-09 2020-05-12
 Austria hCoV-19/Austria/CeMM0038/2020
 C241T C1059T C3037T C14408T G15380K A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_437930
 2020-03-09 2020-05-12
 Austria hCoV-19/Austria/CeMM0042/2020
 C241T C1059T C3037T C14408T A18760R T22521K A23403G G25563T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_437931
 2020-03-09 2020-05-12
 Austria hCoV-19/Austria/CeMM0043/2020
 G1440A G2891R C7011T C9693T T22521K TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_438022
 2020-03-09 2020-05-12
 Austria hCoV-19/Austria/CeMM0180/2020
 C241T C3037T G12832A G14335K C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_438023
 2020-03-09 2020-05-12
 Austria hCoV-19/Austria/CeMM0181/2020
 C241T C3037T G12832A C14408T A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_438024
 2020-03-09 2020-05-12
 Austria hCoV-19/Austria/CeMM0182/2020
 C241T C3037T G12832A C14408T T22521K A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_442523
 2020-03-09 2020-05-12
 Iran hCoV-19/Iran/KHGRC-1.1-IPI-8206/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTC1- G1397A G11083T C18377T G29374A G29742T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_444833
 2020-03-09 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-1261/2020
 C241T C1059T C3037T C14408T G15380T A23403G G25563T

EPI_ISL_444834
 2020-03-09 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-1262/2020
 C241T C3037T C13499T C14408T A23403G C24096T C27046T GGG28881AAC

EPI_ISL_444835
 2020-03-09 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-1263/2020
 C241T C1392T C3037T C14408T A20268G A23403G C24026T C27012T

EPI_ISL_444836
 2020-03-09 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-1264/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_444837
 2020-03-09 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-1265/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_444838
 2020-03-09 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-1268/2020
 C241T C1059T C3037T C14408T C21699T A23403G G25563T

EPI_ISL_444839
 2020-03-09 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-1269/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_444840
 2020-03-09 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-1270/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_444893
 2020-03-09 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-762/2020
 C241T C1059T C3037T G9190T C14408T G15380T A23403G G25563T

EPI_ISL_445248
 2020-03-09 2020-05-15
 Chile hCoV-19/Chile/Santiago_5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C14408T G15286R A20268G A23403G ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_445249
 2020-03-09 2020-05-15
 Chile hCoV-19/Chile/Santiago_6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTC1- G11083T G26144T ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_445250
 2020-03-09 2020-05-15
 Chile hCoV-19/Chile/Santiago_7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C14408T A20268G A23403G GTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29828-

EPI_ISL_445252
 2020-03-09 2020-05-15
 Chile hCoV-19/Chile/Santiago_9/2020
 AT1GGACTTACAAC AA5TC G8ATCTCTT C241T C3037T C14408T A20268G A23403G G29734C CCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29835-

EPI_ISL_447122
 2020-03-09 2020-05-16
 Belgium hCoV-19/Belgium/ULG-8937/2020
 C241T C3037T G4255T T14022A C14408T A23403G A26530G

EPI_ISL_447251
 2020-03-09 2020-05-17
 Israel hCoV-19/Israel/CVL-n3120/2020
 C241T C643T C3037T C3787T C11916T C14408T C15324T A20431R G20464C A23403G

EPI_ISL_447645 MT459901
 2020-03-09 2020-05-11
 Greece SARS-CoV-2/human/GRC/238_31927/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_447651 MT459914
 2020-03-09 2020-05-11
 Greece SARS-CoV-2/human/GRC/259_31928/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_450093
 2020-03-09 2020-05-20
 United States hCoV-19/USA/NY-PV09413/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- G101A C241T C1059T C3037T C5183T C14408T A23403G C23997T G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450123
 2020-03-09 2020-05-20
 United States hCoV-19/USA/NY-PV09449/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G G25563T GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_450793 MT507271
 2020-03-09 2020-05-22
 Jamaica SARS-CoV-2/human/JAM/JM-CDC-0869/2020
 A2480G C2558T G11083T C14805T G26144T G28321A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_451988
 2020-03-09 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-101/2020
 C241T G885T C3037T C5884T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_451991
 2020-03-09 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-106/2020
 C241T C3037T C14408T A23403G G29447T

EPI_ISL_451992
 2020-03-09 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-107/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_451993
 2020-03-09 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-108/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_451994
 2020-03-09 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-110/2020
 C241T C1059T C3037T C14408T G15380T A23403G G25563T

EPI_ISL_451995
 2020-03-09 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-111/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_451996
 2020-03-09 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-112/2020
 C241T C1059T C1302T C3037T T10573C C11202T C11344T C14408T A23403G G25563T G26842A

EPI_ISL_451997
 2020-03-09 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-113/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_451998
 2020-03-09 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-114/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_451999
 2020-03-09 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-115/2020
 C241T C1059T C3037T C14408T G20709T A23403G G25563T

EPI_ISL_452000
 2020-03-09 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-116/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_452109 MT512437
 2020-03-09 2020-05-26
 United States SARS-CoV-2/human/USA/NM-CDC-3589/2020
 C241T C3037T C14408T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_452110 MT512438
 2020-03-09 2020-05-26
 United States SARS-CoV-2/human/USA/FL-CDC-6318/2020
 C241T C313T C1616Y C3037T C14408T A23403G C25521Y GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_452111 MT512439
 2020-03-09 2020-05-26
 United States SARS-CoV-2/human/USA/FL-CDC-2718/2020
 T490A C3177T C8782Y T18736C G19684T C24034T T26729C C27635Y G28077C T28144C A29700G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_452129 MT512429
 2020-03-09 2020-05-26
 United States SARS-CoV-2/human/USA/CO-CDC-5780/2020
 C8782Y C10818Y C14937T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_452131 MT512431
 2020-03-09 2020-05-26
 United States SARS-CoV-2/human/USA/IN-CDC-2013/2020
 T490A C3177T C8782Y T18736Y G19684T C24034T T26729C C27635Y G28077C T28144C A29700G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_452132 MT512415
 2020-03-09 2020-05-26
 United States SARS-CoV-2/human/USA/FL-CDC-2316/2020
 C241T GTTATG515- C884T C3037T C14408T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_452135 MT512418
 2020-03-09 2020-05-26
 United States SARS-CoV-2/human/USA/IN-CDC-2005/2020
 C241T C2416T C3037T C14408T A23403G C25169T G25563T CGAGGCCACGCGGAGTACGAT29733- AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_452136 MT512419
 2020-03-09 2020-05-26
 United States SARS-CoV-2/human/USA/IN-CDC-2006/2020
 C241T C2416T C3037T C14408T A23403G C25169T G25563T CGAGGCCACGCGGAGTACGAT29733- AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_452715
 2020-03-09 2020-05-27
 Spain hCoV-19/Spain/COV000812/2020
 T3022C C8782T T9477A C14805T G25979T T28144C C28657T C28863T

EPI_ISL_452721
 2020-03-09 2020-05-27
 Spain hCoV-19/Spain/COV000793/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T

EPI_ISL_452722
 2020-03-09 2020-05-27
 Spain hCoV-19/Spain/COV000792/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T

EPI_ISL_452726
 2020-03-09 2020-05-27
 Spain hCoV-19/Spain/COV000779/2020
 G1148T C8782T T9477A T12175G C14805T G25979T T28144C C28657T C28863T

EPI_ISL_454000
 2020-03-09 2020-05-28
 Portugal hCoV-19/Portugal/PT0285/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G C29144T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454001
 2020-03-09 2020-05-28
 Portugal hCoV-19/Portugal/PT0286a/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- C241T C3037T C14408T A23403G GGG28881AAC CGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29754-

EPI_ISL_454003
 2020-03-09 2020-05-28
 Portugal hCoV-19/Portugal/PT0287/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- G5425T G11083T C14805T T17247C G26144T AGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29716-

EPI_ISL_454416 MT510999
 2020-03-09 2020-05-23
 Netherlands SARS-CoV-2/human/NLD/Leiden-0002/2020
 ATTAAAGGTTTAT1- C241T C3037T C14408T A23403G C23606Y

EPI_ISL_454439
 2020-03-09 2020-05-28
 Sweden hCoV-19/Sweden/20-08044/2020
 C241T C3037T C14408T A23403G A26530G

EPI_ISL_454440
 2020-03-09 2020-05-28
 Sweden hCoV-19/Sweden/20-08124/2020
 C241T G779A C1059T C3037T C14408T A23403G G25563T

EPI_ISL_454441
 2020-03-09 2020-05-28
 Sweden hCoV-19/Sweden/20-08125/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_454442
 2020-03-09 2020-05-28
 Sweden hCoV-19/Sweden/20-08126/2020
 C241T C1059T C3037T C14408T G20419T A23403G G25563T

EPI_ISL_454479
 2020-03-09 2020-05-28
 Sweden hCoV-19/Sweden/20-08108/2020
 C241T C3037T C6402T C14408T T23287C A23403G GGG28881AAC

EPI_ISL_454480
 2020-03-09 2020-05-28
 Sweden hCoV-19/Sweden/20-08109/2020
 C241T C3037T C14408T C19488T A23403G GGG28881AAC

EPI_ISL_454481
 2020-03-09 2020-05-28
 Sweden hCoV-19/Sweden/20-08110/2020
 C241T C6402T C14408T T23287C A23403G GGG28881AAC

EPI_ISL_454482
 2020-03-09 2020-05-28
 Sweden hCoV-19/Sweden/20-08111/2020
 C241T C3037T C14408T A23403G C23683T GGG28881AAC

EPI_ISL_454483
 2020-03-09 2020-05-28
 Sweden hCoV-19/Sweden/20-08112/2020
 C241T C3037T C14408T A23403G C23683T GGG28881AAC

EPI_ISL_454484
 2020-03-09 2020-05-28
 Sweden hCoV-19/Sweden/20-08113/2020
 C241T C3037T C14408T G22583A A23403G

EPI_ISL_454486
 2020-03-09 2020-05-28
 Sweden hCoV-19/Sweden/20-08115/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_454487
 2020-03-09 2020-05-28
 Sweden hCoV-19/Sweden/20-08116/2020
 C241T C3037T C14408T A23403G

EPI_ISL_454488
 2020-03-09 2020-05-28
 Sweden hCoV-19/Sweden/20-08118/2020
 C241T C3037T C14408T G22583A A23403G

EPI_ISL_454489
 2020-03-09 2020-05-28
 Sweden hCoV-19/Sweden/20-08119/2020
 C241T C3037T C14408T G22583A A23403G

EPI_ISL_454490
 2020-03-09 2020-05-28
 Sweden hCoV-19/Sweden/20-08120/2020
 C241T C3037T C4878T C14408T G18780T G22583A A23403G

EPI_ISL_454491
 2020-03-09 2020-05-28
 Sweden hCoV-19/Sweden/20-08121/2020
 C241T C3037T C14408T G22583A A23403G

EPI_ISL_454492
 2020-03-09 2020-05-28
 Sweden hCoV-19/Sweden/20-08122/2020
 C241T C3037T C14408T G22583A A23403G

EPI_ISL_454493
 2020-03-09 2020-05-28
 Sweden hCoV-19/Sweden/20-08123/2020
 C241T C2141T C3037T C3373A C5654T C14408T A23403G C24034T GGG28881AAC

EPI_ISL_454496
 2020-03-09 2020-05-28
 Sweden hCoV-19/Sweden/20-08054/2020
 C241T C3037T C14408T A23403G G27163T G28329T

EPI_ISL_454595
 2020-03-09 2020-05-28
 Croatia hCoV-19/Croatia/361_Pula/2020
 ATTAA1- C241T C3037T C3373M CCT5548MMY A5552W TT6619WW G6865T C14408T T20147C A23403G G25593C TGTTG28238YKC T28245G T28251CTG CA28253TC GGG28881AAC TTC29309GAA AGA29314CCC CAAGT29318YRMKW ATT29324WYW T29328K TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_454690 MW008579
 2020-03-09 2020-05-28
 United States SARS-CoV-2/human/USA/GA-EHC-083E/2020
 ATTAAA1- C241T C3037T C14408T A23403G G25563T GTTCTA28090- AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_455328
 2020-03-09 2020-05-29
 Spain hCoV-19/Spain/Galicia201792/2020
 A1- A27C C8782T G8927A AG8938GA T9477A C14805T A21174G G25537T G25979T T28144C C28657T C28863T C29718T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_455329
 2020-03-09 2020-05-29
 Spain hCoV-19/Spain/Galicia201793/2020
 A1- A27C A8527G T8671A C8782T T9477A C14805T G25537T G25979T T28144C C28657T C28863T C29718T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_455330
 2020-03-09 2020-05-29
 Spain hCoV-19/Spain/Galicia201796/2020
 A1- C8782T T9477A C14805T A19705C T21368A G25537T G25979T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_455714
 2020-03-09 2020-06-01
 Vietnam hCoV-19/Vietnam/VNHN_301/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_455715
 2020-03-09 2020-06-01
 Vietnam hCoV-19/Vietnam/VNHN_302/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T GT5513A C14408T A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_455847
 2020-03-09 2020-06-01
 Sweden hCoV-19/Sweden/20-08117/2020
 C241T C3037T C14408T A23403G

EPI_ISL_455902
 2020-03-09 2020-06-01
 Sweden hCoV-19/Sweden/20-08127/2020
 G1440A T1778C G2891A C7011T C7299T T24514C G25593C

EPI_ISL_455905
 2020-03-09 2020-06-01
 Sweden hCoV-19/Sweden/20-50272/2020
 C241T C3037T C14408T A23403G C23575T G23587C

EPI_ISL_455909
 2020-03-09 2020-06-01
 Thailand hCoV-19/Thailand/Bangkok-CONI-0106/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- A895G C2942T G4390T C8782T C9598T G20134T G24047A T28144C

EPI_ISL_460311 MT520386
 2020-03-09 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00003/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C2416T C3037T C5284T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_461003
 2020-03-09 2020-06-06
 Netherlands hCoV-19/Netherlands/Limburg_15/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A C4655T G8422A G19648T C22323T C29546A GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461104
 2020-03-09 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_669/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- C17410T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461105
 2020-03-09 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_670/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T T17247C G26144T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461106
 2020-03-09 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_671/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- C17410T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_462328
 2020-03-09 2020-06-08
 Singapore hCoV-19/Singapore/210/2020
 AAAAAAAAAAAA29892-

EPI_ISL_464755
 2020-03-09 2020-06-11
 United Kingdom hCoV-19/England/201141471/2020
 C241T C3037T C14408T G20213R A23403G

EPI_ISL_464767
 2020-03-09 2020-06-11
 United Kingdom hCoV-19/England/201141596/2020
 T514C ATG1605- C22591T

EPI_ISL_464806
 2020-03-09 2020-06-11
 United Kingdom hCoV-19/England/201160910/2020
 C241T C3037T C6968T C14408T A23403G GGG28881AAC

EPI_ISL_464807
 2020-03-09 2020-06-11
 United Kingdom hCoV-19/England/201160912/2020
 G11083T C14805T T17247C C22444T G25784C G26144T

EPI_ISL_464808
 2020-03-09 2020-06-11
 United Kingdom hCoV-19/England/201160953/2020
 G1440A G2891R A27669G

EPI_ISL_466943 LR824058
 2020-03-09 2020-06-12
 Switzerland 100019
 C241T C3037T C14408T A19298W A19356W T19516Y C19522Y A22453R A23403G GGG28881AAC

EPI_ISL_466950 LR824047
 2020-03-09 2020-06-12
 Switzerland 100026
 C241Y C3037Y G11083K C12400Y C14408Y C14805Y T17247Y G22454R C22506S A23403R G26144K

EPI_ISL_469074
 2020-03-09 2020-06-17
 Sweden hCoV-19/Sweden/20-08134/2020
 C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC

EPI_ISL_469143
 2020-03-09 2020-06-17
 Singapore hCoV-19/Singapore/394/2020
 AAAAAAAAAAAA29892-

EPI_ISL_470882
 2020-03-09 2020-06-19
 Norway hCoV-19/Norway/1949/2020
 ATTA1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_471528
 2020-03-09 2020-06-22
 Czech Republic hCoV-19/Czech Republic/NRL_1751/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475550
 2020-03-09 2020-06-23
 Sweden hCoV-19/Sweden/20-08056/2020
 G1397A A7970G G14653A C18788T T28688C G29742T

EPI_ISL_475558
 2020-03-09 2020-06-23
 Sweden hCoV-19/Sweden/20-50204/2020
 C14805T T17247C G26144T

EPI_ISL_475559
 2020-03-09 2020-06-23
 Sweden hCoV-19/Sweden/20-50210/2020
 C884T G1397A TTG3333- C4455T C6070T C8480T G8653T G11083- T28688C G29742T

EPI_ISL_475837
 2020-03-09 2020-06-25
 Austria hCoV-19/Austria/CeMM0402/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2000C C3037T C14408T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475844
 2020-03-09 2020-06-25
 Austria hCoV-19/Austria/CeMM0414/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T19839C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479843
 2020-03-09 2020-07-01
 Japan hCoV-19/Japan/PG-0100/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C11752T C19170A ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_479844
 2020-03-09 2020-07-01
 Japan hCoV-19/Japan/PG-0104/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C5093T C11752T C19170A TTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29822-

EPI_ISL_479845
 2020-03-09 2020-07-01
 Japan hCoV-19/Japan/PG-0106/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C11752T C19170A ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_479846
 2020-03-09 2020-07-01
 Japan hCoV-19/Japan/PG-0108/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C11752T C19170A ATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29819-

EPI_ISL_479920
 2020-03-09 2020-07-01
 Japan hCoV-19/Japan/PG-0221/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C140T A2160G T4402C G5062T C8782T T28144C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_479921
 2020-03-09 2020-07-01
 Japan hCoV-19/Japan/PG-0222/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- A2160G T4402C G5062T C8782T T28144C ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_479928
 2020-03-09 2020-07-01
 Japan hCoV-19/Japan/PG-0233/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C3037T C14408T C15324T A23403G AAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29813-

EPI_ISL_479929
 2020-03-09 2020-07-01
 Japan hCoV-19/Japan/PG-0234/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C3037T C14408T C15324T A23403G AAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29813-

EPI_ISL_479930
 2020-03-09 2020-07-01
 Japan hCoV-19/Japan/PG-0235/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C3037T C14408T C15324T A23403G TGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29840-

EPI_ISL_482451
 2020-03-09 2020-07-03
 United States hCoV-19/USA/OR-PROV-216/2020
 A4236G G11083T C14805T T25655C G26144T

EPI_ISL_482988
 2020-03-09 2020-07-06
 United States hCoV-19/USA/MN-MDH-1267/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C8782T C17010T C17747T A17858G C18060T T28144C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_486646
 2020-03-09 2020-07-10
 Italy hCoV-19/Italy/HSacco-2/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_488349
 2020-03-09 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F750/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G24077T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488748
 2020-03-09 2020-07-14
 United Kingdom hCoV-19/England/NORT-28125A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC G29081R G29540T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488756
 2020-03-09 2020-07-14
 United Kingdom hCoV-19/England/NORT-2812A5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G C9223T G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488807
 2020-03-09 2020-07-14
 United Kingdom hCoV-19/England/NORT-28124B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC G29540T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489839
 2020-03-09 2020-07-14
 Peru hCoV-19/Peru/Peru008/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAA1- C241T C3037T C14408T A20268G A23403G ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_489989
 2020-03-09 2020-07-14
 Peru hCoV-19/Peru/INS-012/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAA1- C241T C3037T C14408T A16216G A20268G A23403G ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_497769
 2020-03-09 2020-07-25
 China hCoV-19/Hong Kong/HKU-200723-002/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1595A A3790G A8121G C9962T G11083T C11704T T13929C C14724T T21584G G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498004
 2020-03-09 2020-07-26
 South Korea hCoV-19/Korea/KCDC2103/2020
 T4402C G5062T C8782T G17814T T28144C

EPI_ISL_498005
 2020-03-09 2020-07-26
 South Korea hCoV-19/Korea/KCDC2104/2020
 ATTAAAG1- T4402C G5062T C8782T G17814T T28144C AAAAAAAAAAAAA29891-

EPI_ISL_500042
 2020-03-09 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A47AF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1514T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_500048
 2020-03-09 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A4833/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A2480G C2558T A9634W G11083T C14805T G26144T C29870A

EPI_ISL_500402
 2020-03-09 2020-07-28
 Spain hCoV-19/Spain/COV005968/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C583T C8782T T9477A C14805T G25979T C26527T T28144C C28603Y C28657T C28863T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_500626
 2020-03-09 2020-07-29
 Australia hCoV-19/Australia/NSW2137/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17747T A17858G C18060T A24694T T28144C CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500632
 2020-03-09 2020-07-29
 Australia hCoV-19/Australia/NSW2154/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500633
 2020-03-09 2020-07-29
 Australia hCoV-19/Australia/NSW2155/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1397A C2113T G11083T C18928T T28688C G29374A G29742T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_506957
 2020-03-09 2020-08-02
 South Korea hCoV-19/Korea/KCDC2163/2020
 ATTAAAG1- T4402C G5062T C8782T G17814T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_506958
 2020-03-09 2020-08-02
 South Korea hCoV-19/Korea/KCDC2164/2020
 ATTAAAG1- T4402C G5062T C8782T G17814T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_506959
 2020-03-09 2020-08-02
 South Korea hCoV-19/Korea/KCDC2165/2020
 ATTAAAGGTTT1- T4402C G5062T C7528T C8782T G17814T T28144C AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_506960
 2020-03-09 2020-08-02
 South Korea hCoV-19/Korea/KCDC2166/2020
 ATTAAAG1- T4402C G5062T C8782T G17814T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_506961
 2020-03-09 2020-08-02
 South Korea hCoV-19/Korea/KCDC2167/2020
 ATTAAAGG1- G124A T4402C G5062T T8168A C8782T G17814T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_506962
 2020-03-09 2020-08-02
 South Korea hCoV-19/Korea/KCDC2168/2020
 ATTAAAG1- T4402C G5062T C8782T G17814T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_506963
 2020-03-09 2020-08-02
 South Korea hCoV-19/Korea/KCDC2169/2020
 ATTAAAGGTTT1- T4402C G5062T C8782T G17814T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_506964
 2020-03-09 2020-08-02
 South Korea hCoV-19/Korea/KCDC2170/2020
 ATTAAAGG1- T4402C G5062T C8782T G17814T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_507010 MT820461
 2020-03-09 2020-07-30
 Saudi Arabia SARS-CoV-2/human/SAU/KAIMRC01/2020
 ATTAAAGGTTTATACC1- C6312A G11083T C13730T C23929T A25615G C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_508937
 2020-03-09 2020-08-04
 France hCoV-19/France/ARA06923/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T A11935C C14408T C15324T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_508938
 2020-03-09 2020-08-04
 France hCoV-19/France/ARA07055/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTT1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_508939
 2020-03-09 2020-08-04
 France hCoV-19/France/ARA07148/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTG1- C241T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_508940
 2020-03-09 2020-08-04
 France hCoV-19/France/ARA07169/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C14408T G16852T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_510166
 2020-03-09 2020-08-06
 Spain hCoV-19/Spain/Madrid/COV005280/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241Y C3037Y C8782Y C13115Y C13356Y C13665Y C14408Y A20268R A23403R T25541Y C26088Y T28144Y CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_510817
 2020-03-09 2020-08-07
 Sweden hCoV-19/Sweden/20-50310/2020
 C241T C3037T C14408T C20031A C20320T A23403G T25674C C27046T GGG28881AAC

EPI_ISL_512653
 2020-03-09 2020-08-11
 Costa Rica hCoV-19/Costa Rica/INC-0047/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- C241T C3037T C6696T C10702T C14408T A20268G A23403G C26461T -29812A GTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29828-

EPI_ISL_516080 MT483876
 2020-03-09 2020-05-18
 Italy SARS-CoV-2/human/ITA/34104/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C3037T G4255T T6640C C14408T A23403G A26057G A26530G GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_516081 MT483877
 2020-03-09 2020-05-18
 Italy SARS-CoV-2/human/ITA/34117/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C3037T C12115T C14408T A23403G A26530G GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_522349
 2020-03-09 2020-08-25
 Belgium hCoV-19/Belgium/rega-0309752/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C3037T T11654C C14408T G17427T A23403G G23873A T28144C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_523932
 2020-03-09 2020-08-27
 Germany hCoV-19/Germany/NW-61/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525591
 2020-03-09 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-12211-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T T595A C1059T C3037T C12534T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_525611
 2020-03-09 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-14419-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- T490A C3177T C7869T C8782T C11941T T18736C C24034T T26729C G28077C T28144C A29700G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_525612
 2020-03-09 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-14422-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C11916T C14408T A23403G G25563T G28376T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_527956
 2020-03-09 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42181461/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T C17285T A23403G TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_534790
 2020-03-09 2020-09-14
 United Kingdom hCoV-19/England/OXON-B2A78/2020
 G11083T C14805T G26031T G26144T G28842T AAAAAAAAAA29894-

EPI_ISL_538268 MW010249
 2020-03-09 2020-09-16
 United States SARS-CoV-2/human/USA/MD-MDH-0184/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C14408T C18877T A23403G G25563T T29867A C29870A

EPI_ISL_539114
 2020-03-09 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8CC8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18606T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539208
 2020-03-09 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8572/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A11438R C14408T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539518
 2020-03-09 2020-09-18
 Spain hCoV-19/Spain/AR-ISCIII-201849/2020
 G11083T G26144T C29801A

EPI_ISL_539519
 2020-03-09 2020-09-18
 Spain hCoV-19/Spain/AR-ISCIII-201850/2020
 A8686T G11083T G26144T

EPI_ISL_539555
 2020-03-09 2020-09-18
 Spain hCoV-19/Spain/CT-ISCIII-209818/2020
 C241T C3037T C11514T A12765G C14408T A20268G A23403G T25779A C27247T ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_539561
 2020-03-09 2020-09-18
 Spain hCoV-19/Spain/EX-ISCIII-201899/2020
 C241T C3037T C14408T A20268G A23403G

EPI_ISL_539563
 2020-03-09 2020-09-18
 Spain hCoV-19/Spain/GA-ISCIII-201794/2020
 A6T GGCTATTGATGGTGGTGTCACTCGTGACATAGCATCTACAGATAC8695- CCAGCGTGGTGGTAGTTATACTAATGACAAAGCTTGCCCATTGATTGCTGCAGTCATAACAAGAGAAGTGGGTTTTGTCGTGCCTGGTTTGCCTGGCACGATATTACGCACAACTAATGGTGACTTTTTGCATTTCTTACCTAGAGTTTTTAGTGCAGTTGGTAACATCTGT8782- T9477A C14805T G25537T G25979T T28144C C28657T C28863T TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_539569
 2020-03-09 2020-09-18
 Spain hCoV-19/Spain/NA-ISCIII-201944/2020
 A3778G T9477A C14805T T28144C C28657T C28863T A29004T

EPI_ISL_539570
 2020-03-09 2020-09-18
 Spain hCoV-19/Spain/NA-ISCIII-201945/2020
 C8782T T9477A C14805T C17304T G25979T T28144C C28657T C28863T

EPI_ISL_539571
 2020-03-09 2020-09-18
 Spain hCoV-19/Spain/NA-ISCIII-201951/2020
 ATTAAAGG1- C8782T T9477A C14805T C21077T G25979T T28144C C28657T C28863T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_539572
 2020-03-09 2020-09-18
 Spain hCoV-19/Spain/NA-ISCIII-201952/2020
 A8256G C8281T C8320A T9477A A10988G C14805T C21575T T25705A G25979T T28144C C28657T C28863T

EPI_ISL_547514
 2020-03-09 2020-09-24
 Netherlands hCoV-19/Netherlands/UT-RIVM-10046/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C280T T514C C583T T1606C C18647T G21776T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547527
 2020-03-09 2020-09-24
 Netherlands hCoV-19/Netherlands/UT-RIVM-10090/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C T1606C G4255T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547528
 2020-03-09 2020-09-24
 Netherlands hCoV-19/Netherlands/UT-RIVM-10091/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_548367
 2020-03-09 2020-09-26
 United States hCoV-19/USA/CA-CZB-3635/2020
 ATTAAAG1- G8S T10W C241T C3037T C14408T C15720Y C18877T A23403G G25563T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

MT292569
 2020-03-09 2020-04-05
 Spain SARS-CoV-2/human/ESP/Valencia13/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT292571
 2020-03-09 2020-04-05
 Spain SARS-CoV-2/human/ESP/Valencia12/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT292573
 2020-03-09 2020-04-05
 Spain SARS-CoV-2/human/ESP/Valencia14/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T9477A C14805T G24928T G25979T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT320891
 2020-03-09 2020-04-10
 Iran SARS-CoV-2/human/IRN/HGRC-1.1-IPI-8206/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTC1- G1397A G11083T C18377T G29374A G29742T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

MT325561
 2020-03-09 2020-04-10
 United States SARS-CoV-2/human/USA/AZ_8132/2020
 C8782T A16628G C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

MT325562
 2020-03-09 2020-04-10
 United States SARS-CoV-2/human/USA/AZ_8135/2020
 C8782T C17747T A17858G C18060T G18197R T28144C AAAAAAAAAAAAAAAAAAAAA29883-

MT325579
 2020-03-09 2020-04-10
 United States SARS-CoV-2/human/USA/IN_2001/2020
 C241T C3037T C14408T GG18505RK A23403G AAAAAAAAAAAAAAAAAAAAA29883-

MT325581
 2020-03-09 2020-04-10
 United States SARS-CoV-2/human/USA/LA_0842/2020
 C241T C1059T C3037T C10319T A14012T C14408T C17894T A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAAAA29883-

MT325597
 2020-03-09 2020-04-10
 United States SARS-CoV-2/human/USA/NV_0052/2020
 A2480G C2558T A4912C G11083T C14805T C17010A C21575T G26144T A27151R AAAAAAAAAAAAAAAAAAAAA29883-

MT325603
 2020-03-09 2020-04-10
 United States SARS-CoV-2/human/USA/PA_4395/2020
 C241T C3037T C14408T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MT459849
 2020-03-09 2020-05-11
 Greece SARS-CoV-2/human/GRC/133_31929/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C6312G C14408T C18877T A23403G G25563T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

MT459863
 2020-03-09 2020-05-11
 Greece SARS-CoV-2/human/GRC/148_31943/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

MT956917
 2020-03-09 2020-09-03
 Spain SARS-CoV-2/human/ESP/HUD-79876568/2020
 C241T C3037T C14408T A23403G

EPI_ISL_415461
 2020-03-10 2020-03-17
 Netherlands hCoV-19/Netherlands/Gelderland_1-2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C8782T G16381A T28144C G28878A G29742A GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415465 LR878344
 2020-03-10 2020-03-17
 Netherlands hCoV-19/Netherlands/NA_1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C1059T C3037T C14408T A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415467 LR878218
 2020-03-10 2020-03-17
 Netherlands hCoV-19/Netherlands/NA_11/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T C10741T C14408T A23403G C27046T C28344A GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415468 LR878083
 2020-03-10 2020-03-17
 Netherlands hCoV-19/Netherlands/NA_12/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T C14408T C22277A A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415469 LR878080
 2020-03-10 2020-03-17
 Netherlands hCoV-19/Netherlands/NA_13/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C1059T C3037T C14408T A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415476 LR878351
 2020-03-10 2020-03-17
 Netherlands hCoV-19/Netherlands/NA_2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T C14408T C18029T A23403G GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415492 LR878097
 2020-03-10 2020-03-17
 Netherlands hCoV-19/Netherlands/NA_35/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- T1570C G11083T C14408T C14805T T17247C T21462C G26144T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415495 LR878345
 2020-03-10 2020-03-17
 Netherlands hCoV-19/Netherlands/NA_6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- G1440A G2891A G16075T G29383T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415500 LR878347
 2020-03-10 2020-03-17
 Netherlands hCoV-19/Netherlands/NoordBrabant_42/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- T514C ATG1605- C17410T G27754T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415526 LR878334
 2020-03-10 2020-03-17
 Netherlands hCoV-19/Netherlands/Utrecht_17/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C8782T G16381A T28144C G28878A G29742A GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415591 MT252791
 2020-03-10 2020-03-18
 United States SARS-CoV-2/human/USA/WA-UW63/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C8782T C17747T A17858G C18060T T28144C AAAA29900-

EPI_ISL_415594 MT252796
 2020-03-10 2020-03-18
 United States SARS-CoV-2/human/USA/WA-UW66/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- T5860C C8782T C17747T A17858G C18060T T18099A T28144C

EPI_ISL_415597 MT252794
 2020-03-10 2020-03-18
 United States SARS-CoV-2/human/USA/WA-UW69/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T C14408T A23403G G25563T G29553A A29903-

EPI_ISL_415598 MT252798
 2020-03-10 2020-03-18
 United States SARS-CoV-2/human/USA/WA-UW70/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCT1- C8782T C17747T A17858G C18060T T28144C

EPI_ISL_415601 MT252792
 2020-03-10 2020-03-18
 United States SARS-CoV-2/human/USA/WA-UW73/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCT1- C241T T3011C C3037T C14408T A23403G

EPI_ISL_415602 MT252795
 2020-03-10 2020-03-18
 United States SARS-CoV-2/human/USA/WA-UW74/2020
 ATTAAAGGTTTATA1- CCCAGG19- CAAACCAACCAA28T C832T C8782T C17747T A17858G C18060T T28144C GAA29864TCT GA29868CT A29903-

EPI_ISL_415603 MT252797
 2020-03-10 2020-03-18
 United States SARS-CoV-2/human/USA/WA-UW75/2020
 ATTAAAG1- AACC34HWYH C8782T C17747T A17858G C18060T A24877G T28144C -29904ANANANA

EPI_ISL_415604 MT252800
 2020-03-10 2020-03-18
 United States SARS-CoV-2/human/USA/WA-UW76/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C8782T C17747T A17858G C18060T C23758T T28144C -29904ANAAANA

EPI_ISL_415626 MT252819
 2020-03-10 2020-03-18
 United States SARS-CoV-2/human/USA/WA-UW61/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAAC19- C37T GTT669- C8782T G17158A C17747T A17858G C18060T T28144C -29904AAAAA

EPI_ISL_415631
 2020-03-10 2020-03-18
 United Kingdom hCoV-19/Scotland/CVR10/2020
 A1515G G11083T C14805T T17247C A21625G G26144T

EPI_ISL_415642
 2020-03-10 2020-03-18
 Georgia hCoV-19/Georgia/Tb-477/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGA1- C241T C3037T C14408T A23403G ATGA29866GCTG AA29871CT A29874T AAA29876TGG AAAAAAAAAAAAAAAAAAAAAAA29881G

EPI_ISL_415643
 2020-03-10 2020-03-18
 Georgia hCoV-19/Georgia/Tb-468/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGA1- A915G C10319T G11083T G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_415787 MT263074
 2020-03-10 2020-03-30
 Peru SARS-CoV-2/human/PER/Peru-10/2020
 ATTAAAGGT1- C241T C3037T A8945G C14408T A23403G T24022C GGG28881AAC ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_416433 MT252677
 2020-03-10 2020-03-21
 United States SARS-CoV-2/human/USA/WA-UW77/2020
 ATTAAAGGTTTATACCTT1- AACC34HTTH C8782T C17747T A17858G C18060T T28144C -29904ANANANANA

EPI_ISL_416434 MT252678
 2020-03-10 2020-03-21
 United States SARS-CoV-2/human/USA/WA-UW78/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T C3037T C14408T T16419C A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_416435 MT252679
 2020-03-10 2020-03-21
 United States SARS-CoV-2/human/USA/WA-UW79/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAAC19- C37T C1929T C5784T C8782T C17747T A17858G C18060T G26730A T28144C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_416436 MT252680
 2020-03-10 2020-03-21
 United States SARS-CoV-2/human/USA/WA-UW80/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCT1- G2782T T5860C C8782T C17747T A17858G C18060T G26063T T28144C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_416437 MT252681
 2020-03-10 2020-03-21
 United States SARS-CoV-2/human/USA/WA-UW81/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACG1- C4084T C8782T C17747T A17858G C18060T T28144C A29869G AAAAAAA29897-

EPI_ISL_416438 MT252682
 2020-03-10 2020-03-21
 United States SARS-CoV-2/human/USA/WA-UW82/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAA29892-

EPI_ISL_416439
 2020-03-10 2020-03-21
 United States hCoV-19/USA/WA-UW83/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C832T C8782T A13901G C17747T A17858G C18060T C27945T T28144C A29869T -29904ANANANANAAA

EPI_ISL_416440 MT252683
 2020-03-10 2020-03-21
 United States SARS-CoV-2/human/USA/WA-UW84/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCA1- T150C T153G C8782T C17747T A17858G C18060T T28144C AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_416441 MT252684
 2020-03-10 2020-03-21
 United States SARS-CoV-2/human/USA/WA-UW85/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGA1- C8782T C17747T A17858G C18060T A18121G C27741T T28144C T29410C AAAAAAAA29896-

EPI_ISL_416442 MT252685
 2020-03-10 2020-03-21
 United States SARS-CoV-2/human/USA/WA-UW86/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAAC1- C8782T C17747T A17858G C18060T T28144C AAAAAA29898-

EPI_ISL_416443 MT252686
 2020-03-10 2020-03-21
 United States SARS-CoV-2/human/USA/WA-UW87/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAAT1- A6693G C8782T C17747T A17858G C18060T T28144C A29869H

EPI_ISL_416444 MT252687
 2020-03-10 2020-03-21
 United States SARS-CoV-2/human/USA/WA-UW88/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- G354A C4755T C8782T C17747T A17858G C18060T T28144C TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_416445 MT252688
 2020-03-10 2020-03-21
 United States SARS-CoV-2/human/USA/WA-UW89/2020
 A55C C8782T C17747T A17858G C18060T T28144C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_416446 MT252689
 2020-03-10 2020-03-21
 United States SARS-CoV-2/human/USA/WA-UW90/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCT1- ATG518- C8782T C17747T A17858G C18060T T28144C AAAAAA29898-

EPI_ISL_416447 MT252690
 2020-03-10 2020-03-21
 United States SARS-CoV-2/human/USA/WA-UW91/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCT1- C8782T C17747T A17858G C18060T C21646T G22988A T28144C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_416451 MT252694
 2020-03-10 2020-03-21
 United States SARS-CoV-2/human/USA/WA-UW95/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCT1- C8782T C17747T A17858G C18060T T28144C C29733T A29876C AAAAAAAA29896-

EPI_ISL_416452 MT252695
 2020-03-10 2020-03-21
 United States SARS-CoV-2/human/USA/WA-UW96/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAA1- C241T C1059T C3037T C14408T A23403G G25563T C27005T G29553A AAAAAAAAAA29894-

EPI_ISL_416495
 2020-03-10 2020-03-22
 France hCoV-19/France/HF2234/2020
 C241T C1059T C3037T C14408T A18682G A23403G G25563T C29739T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_416496
 2020-03-10 2020-03-22
 France hCoV-19/France/HF2237/2020
 C241T C1059T C3037T C14408T A23403G G25563T A26459G G27490T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_416497
 2020-03-10 2020-03-22
 France hCoV-19/France/HF2239/2020
 A4T C241T C2416T C3037T T12722C C14408T A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_416521
 2020-03-10 2020-03-22
 Saudi Arabia hCoV-19/SaudiArabia/SCDC-3321/2020
 TTA2C TT9CCAAACTGTCAC C241T C3037T C14408T C18877T A23403G G25563T C26735T AAAAAAAAAAAA29892-

EPI_ISL_416522
 2020-03-10 2020-03-22
 Saudi Arabia hCoV-19/SaudiArabia/SCDC-3324/2020
 TTA2C TT9CCAAACTGTCAC C241T C3037T C14408T C18877T A23403G G25563T C26735T AAAAAAAAAAAA29892-

EPI_ISL_416650 MT252776
 2020-03-10 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW112/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C556T C6310T C8782T C17747T A17858G C18060T G27327T T28144C G28300T -29904ANANANANANANA

EPI_ISL_416660 MT252786
 2020-03-10 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW122/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_416672
 2020-03-10 2020-03-23
 United States hCoV-19/USA/WA-UW134/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T C1059T C3037T C14408T -19713TTACACAAAAGTTGATGGTGTTGATGTAGAATTGTTTGAAAATAAAACAACATTACCTGTTAATGTAGCATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_416745
 2020-03-10 2020-03-23
 France hCoV-19/France/Pollionay_1733/2020
 C241T C3037T C14408T C15324T A15860G G19872T A23403G C25416T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_417191 MT911534
 2020-03-10 2020-03-24
 United States SARS-CoV-2/human/USA/MN5-MDH5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T20833C A23403G GGG28881AAC AT29697GA A29700G AGA29714GAG -29744GA -29776A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417392
 2020-03-10 2020-03-25
 Australia hCoV-19/Australia/NSW31/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1397A C2113T -11075TTT G11083T C18928T T28688C G29374A G29742T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417394
 2020-03-10 2020-03-25
 Australia hCoV-19/Australia/NSW36/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- G1820A A2480G C2558T T8599C G11083T C14805T G26144T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_417395
 2020-03-10 2020-03-25
 Australia hCoV-19/Australia/NSW37/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C8782T C17747T A17858G C18060T A24694T T28144C CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_417396
 2020-03-10 2020-03-25
 Australia hCoV-19/Australia/NSW38/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C6312A G11083T C13730T C23929T A25615G C28311T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_417399
 2020-03-10 2020-03-25
 Australia hCoV-19/Australia/NSW41/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C2558T G11083T C14805T G26144T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_417400
 2020-03-10 2020-03-25
 Australia hCoV-19/Australia/NSW44/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C6312A G11083T C13730T C23929T C28311T C29614T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_417457 MT582488
 2020-03-10 2020-03-26
 Germany SARS-CoV-2/human/DEU/NRW-12/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_417521 MT374104
 2020-03-10 2020-03-27
 Taiwan SARS-CoV-2/human/TWN/CGMH-CGU-08/2020
 C1059T G1397A G11083T C23934T T28648C T28688C G29742T

EPI_ISL_417682
 2020-03-10 2020-03-27
 Iceland hCoV-19/Iceland/101/2020
 C241T C1059T C1302T C2939T C3037T T11191G C14408T A23403G G25563T

EPI_ISL_417698
 2020-03-10 2020-03-27
 Iceland hCoV-19/Iceland/103/2020
 C241T C3037T C14408T A23403G G24077T

EPI_ISL_417730
 2020-03-10 2020-03-27
 Iceland hCoV-19/Iceland/93/2020
 C241T C3037T C14408T A23403G

EPI_ISL_417732
 2020-03-10 2020-03-27
 Iceland hCoV-19/Iceland/94/2020
 A1515G C9223T G11083T C14805T T17247C A17799G G26144T G29321T

EPI_ISL_417761
 2020-03-10 2020-03-27
 Iceland hCoV-19/Iceland/84/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_417777
 2020-03-10 2020-03-27
 Iceland hCoV-19/Iceland/102/2020
 C241T C799T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_417872
 2020-03-10 2020-03-27
 Iceland hCoV-19/Iceland/90/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_417873
 2020-03-10 2020-03-27
 Iceland hCoV-19/Iceland/91/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27532T

EPI_ISL_417876
 2020-03-10 2020-03-27
 Iceland hCoV-19/Iceland/97/2020
 C241T C3037T C14408T A23403G C24054T A25958G C27046T GGG28881AAC

EPI_ISL_417958 MT334529
 2020-03-10 2020-03-27
 United States SARS-CoV-2/human/USA/UT-00010/2020
 G1440A G2891A C7011T G29868V

EPI_ISL_418000
 2020-03-10 2020-03-28
 Portugal hCoV-19/Portugal/PT0015/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- ATG1605- G5332T C20270T C20703T A29683T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_418001
 2020-03-10 2020-03-28
 Portugal hCoV-19/Portugal/PT0016/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3373A C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_418003
 2020-03-10 2020-03-28
 Portugal hCoV-19/Portugal/PT0018/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_418016
 2020-03-10 2020-03-28
 Portugal hCoV-19/Portugal/PT0031/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G C25791T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_418210
 2020-03-10 2020-03-29
 Senegal hCoV-19/Senegal/073/2020
 C241T C3037T C14408T A23403G G27261T

EPI_ISL_418333
 2020-03-10 2020-03-10
 Canada hCoV-19/Canada/ON_PHL3501/2020
 A1- T8767C C8782T T10771C C17733T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418362
 2020-03-10 2020-03-10
 Canada hCoV-19/Canada/ON_PHL3536/2020
 A1- C241T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418365
 2020-03-10 2020-03-10
 Canada hCoV-19/Canada/ON_PHL0977/2020
 A1- C241T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418369
 2020-03-10 2020-03-10
 Canada hCoV-19/Canada/ON_PHL8539/2020
 A1- C241T C3037T C3373A C9733T C14408T A23403G GGG28881AAC A29877G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418582
 2020-03-10 2020-03-30
 Ireland hCoV-19/Ireland/22901/2020
 A2480G C2558T G11083T C14805T G26144T

EPI_ISL_418583
 2020-03-10 2020-03-30
 Ireland hCoV-19/Ireland/24042/2020
 G11083T C14805T T17247C G26144T

EPI_ISL_418584
 2020-03-10 2020-03-30
 Ireland hCoV-19/Ireland/24052/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_418676
 2020-03-10 2020-03-30
 United Kingdom hCoV-19/England/20122074602/2020
 G11083T C14805T G26144T C26533Y

EPI_ISL_418793
 2020-03-10 2020-03-31
 Belgium hCoV-19/Belgium/SS-031047/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C23393T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_418800
 2020-03-10 2020-03-31
 Belgium hCoV-19/Belgium/CS-031052/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A C2469T G2891A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_418821
 2020-03-10 2020-03-31
 Canada hCoV-19/Canada/BC_3968175/2020
 C8782T A17858G C18060T T28144C

EPI_ISL_418822
 2020-03-10 2020-03-31
 Canada hCoV-19/Canada/BC_3972884/2020
 C8782T A17858G C18060T T28144C

EPI_ISL_418825
 2020-03-10 2020-03-31
 Canada hCoV-19/Canada/BC_4118226/2020
 C8782T A17858G C18060T T28144C

EPI_ISL_418826
 2020-03-10 2020-03-31
 Canada hCoV-19/Canada/BC_4122951/2020
 C8782T A17858G C18060T T28144C G29736T

EPI_ISL_418829
 2020-03-10 2020-03-31
 Canada hCoV-19/Canada/BC_4540462/2020
 C8782T A17858G C18060T T28144C

EPI_ISL_418836
 2020-03-10 2020-03-31
 Canada hCoV-19/Canada/BC_6004567/2020
 C241T C3037T C12138T C14408T C18877T A23403G G25563T

EPI_ISL_418837
 2020-03-10 2020-03-31
 Canada hCoV-19/Canada/BC_6129127/2020
 C241T C3037T C14408T C18877T A23403G G25563T

EPI_ISL_418839
 2020-03-10 2020-03-31
 Canada hCoV-19/Canada/BC_6489864/2020
 A187G C241T C3037T C14408T A23403G G29810T

EPI_ISL_419263 MT322404
 2020-03-10 2020-04-08
 United States SARS-CoV-2/human/USA/VA-DCLS-0011/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C8782T C17747T A17858G C18060T T28144C C29870A

EPI_ISL_419297 LC547519
 2020-03-10 2020-04-02
 Japan hCoV-19/Japan/P2-1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACT1- C241T C3037T C14408T C18877T A23403G G25563T TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_419298 LC547520
 2020-03-10 2020-04-02
 Japan hCoV-19/Japan/P2-2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_419659
 2020-03-10 2020-04-03
 Austria hCoV-19/Austria/CeMM0006/2020
 C241T C3037T C14408T A20268G A23403G C27092T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_419661
 2020-03-10 2020-04-03
 Austria hCoV-19/Austria/CeMM0008/2020
 C241T C3037T C14408T A20268G G22349K A23403G C26958Y G29734C TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_419665
 2020-03-10 2020-04-03
 Austria hCoV-19/Austria/CeMM0012/2020
 C241T C1059T C3037T G10981K C14408T A23403G G25563T TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_419680
 2020-03-10 2020-04-03
 Spain hCoV-19/Spain/Valencia16/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_419681
 2020-03-10 2020-04-03
 Spain hCoV-19/Spain/Valencia17/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C29144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_419706 MT322405
 2020-03-10 2020-04-08
 United States SARS-CoV-2/human/USA/VA-DCLS-0012/2020
 AT1-C C241T C2416T C3037T C14408T A23403G G25563T C29870A

EPI_ISL_419712 MT322410
 2020-03-10 2020-04-08
 United States SARS-CoV-2/human/USA/VA-DCLS-0020/2020
 ATTAAAGGTTTA1- C241T C2416T C3037T C14408T A23403G G25563T C29870A

EPI_ISL_419744 MT450940
 2020-03-10 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC25/2020
 ATTAAAGGTTTATAC1- A1515G C9223T G11083T C14805T T17247C G21795A G26144T

EPI_ISL_419745 MT450941
 2020-03-10 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC26/2020
 AT1- G1440A G2891A C7011T

EPI_ISL_419746 MT450942
 2020-03-10 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC27/2020
 ATTA1- T490A T998G C3177T C8782T T18736C G19684T C24034T T26729C C27635T G28077C T28144C A29700G

EPI_ISL_419747 MT450943
 2020-03-10 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC28/2020
 ATTAAAGGTTTA1- T490A C3177T C8782T T18736C G19684T C24034T T26729C C27635T G28077C T28144C A29700G

EPI_ISL_419748 MT450944
 2020-03-10 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC29/2020
 A1- C241T C3037T T11638C C14408T A23403G T23797Y C28232Y GGG28881AAC C29708T

EPI_ISL_419749 MT450945
 2020-03-10 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC30/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C1076T G1397A G11083T G19788T T28688C G29742T

EPI_ISL_419750 MT450946
 2020-03-10 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC31/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_419751 MT450947
 2020-03-10 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC32/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- T490A C3177T C8782T T18736C G19684T C24034T T26729C C27635T G28077C T28144C A29700G

EPI_ISL_419752 MT450948
 2020-03-10 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC33/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- T490A C3177T C8782T T18736C G19684T C24034T T26729C C27635T G28077C T28144C A29700G

EPI_ISL_419753 MT450949
 2020-03-10 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC34/2020
 ATTAAAGG1- A1079C G1397A T7225C C9319T G11083T C19862T T27384C T28688C G29742T

EPI_ISL_419755 MT450950
 2020-03-10 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC35/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- T490A C3177T C8782T T18736C G19684T C24034T T26729C C27635T G28077C T28144C A29700G

EPI_ISL_419765 MT450951
 2020-03-10 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC36/2020
 ATTAAAGGTTTATACCTT1- G7128A G11083T C14805T T17247C G26144T

EPI_ISL_420108
 2020-03-10 2020-04-05
 Singapore hCoV-19/Singapore/31/2020
 ATTAAAGGTTTA1- TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_420141
 2020-03-10 2020-04-05
 Norway hCoV-19/Norway/1867/2020
 ATTAAA1- C241T C3037T C5547T C5730T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_420143
 2020-03-10 2020-04-05
 Norway hCoV-19/Norway/1917/2020
 ATTA1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_420147
 2020-03-10 2020-04-05
 Norway hCoV-19/Norway/1989/2020
 ATTAAAG1- C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_420313
 2020-03-10 2020-04-06
 Norway hCoV-19/Norway/1953/2020
 ATTAAAGGTTT1- C241T C3037T T3725G C14408T A23403G A26530G

EPI_ISL_421662
 2020-03-10 2020-04-09
 India hCoV-19/India/1073/2020
 ATTAAAGGTTTATAC1- C884T G1397A A3472G G8653T T9318A T9320A T9357A G11083T G27613T T28688C G29742T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_421663
 2020-03-10 2020-04-09
 India hCoV-19/India/1093/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C884T G1397A C2141A A3472G G8653T G11083T T25612G G25641C G27613T T28688C G29742T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_421664
 2020-03-10 2020-04-09
 India hCoV-19/India/1100/2020
 ATTAAAGGTTT1- C884T G1397A A3472G G8653T G11083T A16061G G27613T T28688C G29742T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_421665
 2020-03-10 2020-04-09
 India hCoV-19/India/1104/2020
 ATTAAAGGTTTAT1- C884T G1397A C2638T G8653T C9226T G11083T C13548T C17573T A25980C T28688C G29742T A29879G A29883T A29901T

EPI_ISL_421666
 2020-03-10 2020-04-09
 India hCoV-19/India/1111/2020
 ATTAAAGGTTTA1- C1267T G1397A A9514G G11083T T28688C G29742T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_421667
 2020-03-10 2020-04-09
 India hCoV-19/India/1115/2020
 ATTAAAG1- C884T G1397A A3472G G8653T G11083T G27613T T28688C G29742T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_421668
 2020-03-10 2020-04-09
 India hCoV-19/India/1125/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C583T G1397A TACTAT6853- C7011T C11074T G11083T C25904T C27213T C27999T T28688C G29742T A29891G

EPI_ISL_422641 LR878122
 2020-03-10 2020-04-11
 Netherlands hCoV-19/Netherlands/Gelderland_5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- C17410T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422661 LR878195
 2020-03-10 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_113/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- C10186T C17410T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422662 LR878201
 2020-03-10 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_114/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422834 LR878165
 2020-03-10 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_74/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T T17247C G26144T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422835 LR878155
 2020-03-10 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_75/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- C17410T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422839 LR878162
 2020-03-10 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_79/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C878A G11083T C14805T T17247C G26144T C26353T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422894 LR878117
 2020-03-10 2020-04-11
 Netherlands hCoV-19/Netherlands/NoordHolland_31/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- C17410T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_424352 GWHACEY01000001 MT281577
 2020-03-10 2020-04-04
 China SARS-CoV-2/Fuyang_FY002/human/2020/CHN
 T721C G1895T G11083T C21711T G26144T A29695G

EPI_ISL_424352 GWHACEY01000001 MT281577
 2020-03-10 2020-04-04
 China SARS-CoV-2/Fuyang_FY002/human/2020/CHN
 T721C G1895T G11083T C21711T G26144T A29695G

EPI_ISL_424361
 2020-03-10 2020-04-13
 India hCoV-19/India/1063/2020
 AT1- G7C C884T G1397A G8653T G11083T G27613T T28688C C29296T G29742T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_424362
 2020-03-10 2020-04-13
 India hCoV-19/India/1135/2020
 ATTAAAGGTTTATAC1- C241T C3037T C4809T C14408T C22855A C22858A T22861A T22863A A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_424670
 2020-03-10 2020-04-13
 Mexico hCoV-19/Mexico/Queretaro-InDRE_04/2020
 C8782T C26088T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_424864
 2020-03-10 2020-04-13
 United States hCoV-19/USA/GA_2343/2020
 T490A C3177T C8782T T18736C C21588T C24034T T26729C G28077C T28144C A29700G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_425179
 2020-03-10 2020-04-14
 Spain hCoV-19/Spain/Valencia55/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425180
 2020-03-10 2020-04-14
 Spain hCoV-19/Spain/Valencia56/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425181
 2020-03-10 2020-04-14
 Spain hCoV-19/Spain/Valencia57/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425182
 2020-03-10 2020-04-14
 Spain hCoV-19/Spain/Valencia58/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T9477A C14805T C21697T G25979T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425183
 2020-03-10 2020-04-14
 Spain hCoV-19/Spain/Valencia59/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T9477A C14805T C21697T G25979T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425184
 2020-03-10 2020-04-14
 Spain hCoV-19/Spain/Valencia60/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425185
 2020-03-10 2020-04-14
 Spain hCoV-19/Spain/Valencia61/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425186
 2020-03-10 2020-04-14
 Spain hCoV-19/Spain/Valencia62/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425663
 2020-03-10 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR12/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C23422T T23849C C29686T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425800
 2020-03-10 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR69/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6653R C14408T C23086T A23403G C27046T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_426293
 2020-03-10 2020-04-15
 United States hCoV-19/USA/NY-Wadsworth-12883-02/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426362
 2020-03-10 2020-04-16
 Mexico hCoV-19/Mexico/CDMX-INCMNSZ_02/2020
 C8782T T9477A C14805T C23280T G25979T T28144C C28657T C28863T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_427305
 2020-03-10 2020-04-18
 Brazil hCoV-19/Brazil/SC-766/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C6312A G11083T C12403T C13730T C23929T C28311T AG29782CT G29786C TATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29791-

EPI_ISL_427306
 2020-03-10 2020-04-18
 Brazil hCoV-19/Brazil/SC-769/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C14408T A23403G G25563T AG29782CT G29786C TATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29791-

EPI_ISL_428671 MT371048
 2020-03-10 2020-04-21
 Sri Lanka SARS-CoV-2/human/LKA/COV53/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_429157
 2020-03-10 2020-04-23
 Sweden hCoV-19/Sweden/20-50234/2020
 C241T C3037T C14408T A23403G G25273T GGG28881AAC

EPI_ISL_429158
 2020-03-10 2020-04-23
 Sweden hCoV-19/Sweden/20-50235/2020
 C241T C3037T A12790G C13568T G14209A C14408T A23403G

EPI_ISL_429262
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH01/2020
 C241T A761G C1059T C3037T A6825C C14408T A23403G G25563T

EPI_ISL_429263
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH02/2020
 C241T C583T C1059T C3037T A6825C C14408T A23403G G25563T

EPI_ISL_429264
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH03/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429265
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH04/2020
 C241T C1059T C3037T C8476T G13749T C14408T A23403G G25563T

EPI_ISL_429266
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH05/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429267
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH06/2020
 C241T C1059T C3037T G13749T C14408T A23403G G25563T

EPI_ISL_429268
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH07/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429269
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH08/2020
 C241T C1059T C3037T G12070T C14408T A23403G G24199T G25563T

EPI_ISL_429270
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH11/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429271
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH13/2020
 C241T C1059T C3037T C12885T C14408T A23403G G25563T

EPI_ISL_429272
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH14/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429273
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH15/2020
 C106T C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC

EPI_ISL_429274
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH16/2020
 C241T C1059T C3037T C14408T C19263T A23403G G25563T

EPI_ISL_429275
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH17/2020
 C241T C1059T C3037T C14408T C19263T A23403G G25563T

EPI_ISL_429276
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH18/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429277
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH19/2020
 C241T C1059T C3037T A6133G C14408T G20419T A23403G G25563T

EPI_ISL_429278
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH20/2020
 C241T C3037T C14408T A23403G G25563T

EPI_ISL_429279
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH21/2020
 G1440A G2891A C7011T

EPI_ISL_429280
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH22/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429281
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH23/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429371
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI155/2020
 C241T C1059T C3037T C14408T A23403G G25563T A29389G

EPI_ISL_429372
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI156/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429404
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI207/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429405
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI209/2020
 C241T C3037T C14408T A23403G G27163T G28329T

EPI_ISL_429408
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI216/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_429409
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI219/2020
 C241T C1059T C3037T A23403G G25563T

EPI_ISL_429410
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI221/2020
 C241T C3037T C14408T C22277A A23403G C27046T GGG28881AAC

EPI_ISL_429420
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI258/2020
 G1440A G2891A C7011T

EPI_ISL_429421
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI259/2020
 G1440A G2891A C7011T

EPI_ISL_429424
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI262/2020
 C241T T658C C3037T C14408T G21604T A23403G A24862G G26209C C28629T

EPI_ISL_429425
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI263/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_429426
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI264/2020
 G1440A G2891A C7011T

EPI_ISL_429427
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI265/2020
 G1440A G2891A C7011T

EPI_ISL_429428
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI268/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429431
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI271/2020
 C241T C1059T C3037T C3743T C14408T A23403G G25563T

EPI_ISL_429433
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI272/2020
 C241T C1059T C3037T C14408T G15380T A23403G G25563T

EPI_ISL_429434
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI273/2020
 C241T T658C C3037T C14408T A23403G A24862G G26209C C28629T

EPI_ISL_429439
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI279/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429440
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI280/2020
 C241T C1059T C3037T C14408T A23403G T25414C G25563T

EPI_ISL_429448
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI293/2020
 G1440A G2891A C7011T C11962T

EPI_ISL_429449
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI298/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429450
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI299/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429451
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI300/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429452
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI301/2020
 C241T C1059T C3037T C7162T C14408T T18300C A23403G G25563T

EPI_ISL_429453
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI302/2020
 C241T C1059T C3037T C14408T A23403G G25563T A29389G

EPI_ISL_429501
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI407/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429502
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI408/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429503
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI409/2020
 C241T C1059T C3037T C14408T G15380T A23403G G25563T

EPI_ISL_429505
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI411/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429507
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI412/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_429509
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI413/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429511
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI414/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429513
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI416/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429514
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI417/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429516
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI418/2020
 C241T C1059T C3037T C14408T A23403G G25563T G29422T

EPI_ISL_429807
 2020-03-10 2020-04-24
 Canada hCoV-19/Canada/MB_2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6312A C8139T G11083T C13730T C23929T C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_430136 MT627621
 2020-03-10 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S282/2020
 C241T C1059T C3037T C6040T C14408T A23403G G25563T C29259T

EPI_ISL_430286 MT632609
 2020-03-10 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S248/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_430718
 2020-03-10 2020-04-27
 Spain hCoV-19/Spain/Madrid_H12_16/2020
 ATTAAAGGTTTATACCTTCCCAGG1- T25G C241T C3037T C14408T A20268G A23403G G29734C TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_430886 MT412239
 2020-03-10 2020-04-28
 United States SARS-CoV-2/human/USA/UNKNOWN-UW-547/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- C36T C8782T G11083T C17747T A17858G C18060T T28144C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_434125 MT632837
 2020-03-10 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S365/2020
 C17747T A17858G C18060T G20580A C21721T C26456T C27498T T28144C

EPI_ISL_434475
 2020-03-10 2020-04-29
 Greece hCoV-19/Greece/134/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- G11083T C14805T G26144T G28842T TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_434476
 2020-03-10 2020-04-29
 Greece hCoV-19/Greece/135/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGG28881AAC TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_434636 MT295464
 2020-03-10 2020-04-06
 United States SARS CoV-2/human/USA/UF-1/2020
 ATTAAAGGTTT1- C8782T C17747T A17858G C18060T A24694T T28144C

EPI_ISL_434643
 2020-03-10 2020-04-30
 Sweden hCoV-19/Sweden/20-05448/2020
 C241T C3037T C14408T A23403G A26530G

EPI_ISL_434644
 2020-03-10 2020-04-30
 Sweden hCoV-19/Sweden/20-05469/2020
 C241T C3037T C14408T A23403G A26530G

EPI_ISL_435129
 2020-03-10 2020-05-03
 United Arab Emirates hCoV-19/United Arab Emirates/L1758/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_435133
 2020-03-10 2020-05-03
 United Arab Emirates hCoV-19/United Arab Emirates/L4184/2020
 G2494A C18501T

EPI_ISL_435311
 2020-03-10 2020-05-04
 Vietnam hCoV-19/Vietnam/VNHN_0418/2020
 A1- A5C C241T C3037T A6276G C14408T A23403G GGG28881AAC AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_435312
 2020-03-10 2020-05-04
 Vietnam hCoV-19/Vietnam/VNHN_0419/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC A29878G AAAAAAAAAAAAAAAAAAAA29884-

EPI_ISL_435627
 2020-03-10 2020-05-05
 United States hCoV-19/USA/CA-SCCPHD-UC148/2020
 C15848T G29711T

EPI_ISL_435634
 2020-03-10 2020-05-05
 United States hCoV-19/USA/CA-SCCPHD-UC155/2020
 G27798A C27874T

EPI_ISL_436074 MT434805
 2020-03-10 2020-05-05
 United States SARS-CoV-2/human/USA/NY-CDC-SURV0862NYC/2020
 C241T C1059T C11916T C14408T C18998T A23403G G25563T G29540A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_436075 MT434806
 2020-03-10 2020-05-05
 United States SARS-CoV-2/human/USA/NY-CDC-SURV0863NYC/2020
 C241T C1059T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_436803 MT439233
 2020-03-10 2020-05-06
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20162/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_436965
 2020-03-10 2020-05-08
 Denmark hCoV-19/Denmark/ALAB-SSI-284/2020
 C241T GTTATG515- C1059T C3037T C14408T G15380T A23403G G25563T

EPI_ISL_437657
 2020-03-10 2020-05-11
 Denmark hCoV-19/Denmark/ALAB-SSI-242/2020
 C241T C1059T C3037T C14408T A23403G G25563T G29422T

EPI_ISL_437658
 2020-03-10 2020-05-11
 Denmark hCoV-19/Denmark/ALAB-SSI-243/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_437659
 2020-03-10 2020-05-11
 Denmark hCoV-19/Denmark/ALAB-SSI-244/2020
 G1440A G2891A C7011T

EPI_ISL_437661
 2020-03-10 2020-05-11
 Denmark hCoV-19/Denmark/ALAB-SSI-246/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_437662
 2020-03-10 2020-05-11
 Denmark hCoV-19/Denmark/ALAB-SSI-247/2020
 C241T C1059T C3037T -11075T C14408T G20419T A23403G G25563T

EPI_ISL_437664
 2020-03-10 2020-05-11
 Denmark hCoV-19/Denmark/ALAB-SSI-251/2020
 G1440A G2891A C7011T

EPI_ISL_437900 MT459908
 2020-03-10 2020-05-11
 Greece SARS-CoV-2/human/GRC/248_32261/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C6312G C14408T A15593G C18877T A23403G G25563T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_437903 MT459915
 2020-03-10 2020-05-11
 Greece SARS-CoV-2/human/GRC/243_32202/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C10202T C14408T A23403G C25350T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_437905 MT459917
 2020-03-10 2020-05-11
 Greece SARS-CoV-2/human/GRC/246_32206/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C5183T C14408T C18877T A23403G G25563T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_437923
 2020-03-10 2020-05-12
 Austria hCoV-19/Austria/CeMM0034/2020
 C241T C1059T C3037T C14408T A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_437928
 2020-03-10 2020-05-12
 Austria hCoV-19/Austria/CeMM0039/2020
 C241T C1059T C3037T C14408T A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_437974
 2020-03-10 2020-05-12
 Austria hCoV-19/Austria/CeMM0116/2020
 C241T C1059T C3037T C14408T G15380T A23403G G25563T AAAAAAAAAAA29893-

EPI_ISL_438025
 2020-03-10 2020-05-12
 Austria hCoV-19/Austria/CeMM0183/2020
 C241T C3037T G12832A C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_441410
 2020-03-10 2020-05-12
 United Kingdom hCoV-19/Northern Ireland/NIRE-1023D7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_444841
 2020-03-10 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-1272/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_445251
 2020-03-10 2020-05-15
 Chile hCoV-19/Chile/Santiago_8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C313T C3037T C14408T A23403G C25782T C28102T GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_445253
 2020-03-10 2020-05-15
 Chile hCoV-19/Chile/Santiago_10/2020
 A1C C241T C3037T C14408T C18877T A23403G G25563T TCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29834C

EPI_ISL_445255
 2020-03-10 2020-05-15
 Chile hCoV-19/Chile/Santiago_12/2020
 A5G G7C C241T C3037T C14408T C19170T G19509A A23403G GGG28881AAC C29109T CTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29831-

EPI_ISL_445256
 2020-03-10 2020-05-15
 Chile hCoV-19/Chile/Santiago_13/2020
 AT1GGTTTATGATCCTTTGCAACCTGAA A4T T76W T78K C241T C313T C3037T C14408T G18826T G20006T A23403G GGG28881AAC TCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29834C

EPI_ISL_445257
 2020-03-10 2020-05-15
 Chile hCoV-19/Chile/Santiago_14/2020
 -2ACACAGTTTATGATCCTTTGCAACCTGAA -5GACAGAATGTACAT T76W T78K C8782T C14599T G18826T C19983T C26088T C26873T T28144C CCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29835-

EPI_ISL_445259
 2020-03-10 2020-05-15
 Chile hCoV-19/Chile/Santiago_16/2020
 TTAAAGGTTTATACCT2- C8782T T9477A C14805T G25979T T28144C C28657T C28863T TCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29834C

EPI_ISL_447646 MT459902
 2020-03-10 2020-05-11
 Greece SARS-CoV-2/human/GRC/239_32178/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_447647 MT459907
 2020-03-10 2020-05-11
 Greece SARS-CoV-2/human/GRC/247_32207/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_447648 MT459909
 2020-03-10 2020-05-11
 Greece SARS-CoV-2/human/GRC/250_32267/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_450087
 2020-03-10 2020-05-20
 United States hCoV-19/USA/NY-PV09407/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14178T C14408T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450113
 2020-03-10 2020-05-20
 United States hCoV-19/USA/NY-PV09436/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C3037T C14408T A23403G GGG28881AAC AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450114
 2020-03-10 2020-05-20
 United States hCoV-19/USA/NY-PV09437/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_452105 MT512433
 2020-03-10 2020-05-26
 United States SARS-CoV-2/human/USA/TX-CDC-3008/2020
 C241T C1059T C3037T C14408T A23403G G25015K G25563T C27964T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_452106 MT512434
 2020-03-10 2020-05-26
 United States SARS-CoV-2/human/USA/LA-CDC-0499/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_452107 MT512435
 2020-03-10 2020-05-26
 United States SARS-CoV-2/human/USA/LA-CDC-0757/2020
 C241T C1059T C1913T C3037T C14408T A23403G G25563T C27964T C28099T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_452108 MT512436
 2020-03-10 2020-05-26
 United States SARS-CoV-2/human/USA/MN-CDC-0103/2020
 C241T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_452112 MT512440
 2020-03-10 2020-05-26
 United States SARS-CoV-2/human/USA/TX-CDC-3009/2020
 C241T C2416T C3037T T9708C C10712T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_452113 MT512441
 2020-03-10 2020-05-26
 United States SARS-CoV-2/human/USA/MN-CDC-0108/2020
 T490A C3177T T3766C C5211T C8782Y A16790R T18736C C24034T T26729C C27635Y G28077S T28144C A29700G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_452114 MT512442
 2020-03-10 2020-05-26
 United States SARS-CoV-2/human/USA/KS-CDC-4589/2020
 C241T C3037T C14408T A23403G C23683Y AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_452117 MT512445
 2020-03-10 2020-05-26
 United States SARS-CoV-2/human/USA/NJ-CDC-7300/2020
 C241T C1059T C3037T C14408T A23403G G25563T A27821G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_452133 MT512416
 2020-03-10 2020-05-26
 United States SARS-CoV-2/human/USA/MN-CDC-0106/2020
 C8782T T10480C C17747T A17858G C18060T A24694T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_452213
 2020-03-10 2020-05-27
 India hCoV-19/India/NIV-981/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- G1397A A3039G G11083T A18052G A25596G T28688C A28795G G29742T A29827T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830T

EPI_ISL_452539
 2020-03-10 2020-05-27
 Spain hCoV-19/Spain/COV001362/2020
 C8782T A11430R G20068K C20132T C26088T T28144C

EPI_ISL_452541
 2020-03-10 2020-05-27
 Spain hCoV-19/Spain/COV001360/2020
 C8782T C10782Y C20132T C26088T T28144C

EPI_ISL_452735
 2020-03-10 2020-05-27
 Spain hCoV-19/Spain/COV000754/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T C29870A

EPI_ISL_454004
 2020-03-10 2020-05-28
 Portugal hCoV-19/Portugal/PT0288/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454005
 2020-03-10 2020-05-28
 Portugal hCoV-19/Portugal/PT0289/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A17013T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454443
 2020-03-10 2020-05-28
 Sweden hCoV-19/Sweden/20-08128/2020
 G1440A G2891A C7011T C18804T C23520T

EPI_ISL_454444
 2020-03-10 2020-05-28
 Sweden hCoV-19/Sweden/20-08129/2020
 C241T C3037T C5547T C5730T C14408T A23403G GGG28881AAC

EPI_ISL_454445
 2020-03-10 2020-05-28
 Sweden hCoV-19/Sweden/20-08131/2020
 C241T C3037T C14408T A23403G C23575T G23587C

EPI_ISL_454446
 2020-03-10 2020-05-28
 Sweden hCoV-19/Sweden/20-08132/2020
 C241T AAGTCATTT686- C1059T C3037T C14408T A23403G G25563T

EPI_ISL_454476
 2020-03-10 2020-05-28
 Sweden hCoV-19/Sweden/20-08105/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_454477
 2020-03-10 2020-05-28
 Sweden hCoV-19/Sweden/20-08106/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_454785
 2020-03-10 2020-05-29
 Netherlands hCoV-19/Netherlands/Utrecht_10036/2020
 ATTAAAGGTTTAT1- T514C ATG1605- C17410T AAAAAAAAAAAAAAAAAAAAAA29882-

EPI_ISL_454897
 2020-03-10 2020-05-29
 Sweden hCoV-19/Sweden/20-50283/2020
 G1440A G2891A C7011T C26568T

EPI_ISL_454898
 2020-03-10 2020-05-29
 Sweden hCoV-19/Sweden/20-50285/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_454899
 2020-03-10 2020-05-29
 Sweden hCoV-19/Sweden/20-50288/2020
 G1440A G2891A C7011T

EPI_ISL_454900
 2020-03-10 2020-05-29
 Sweden hCoV-19/Sweden/20-50292/2020
 C241T C3037T G4255T C14408T T16456G C20051T A23403G A26530G G29348T

EPI_ISL_454901
 2020-03-10 2020-05-29
 Sweden hCoV-19/Sweden/20-50293/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T G27916A

EPI_ISL_455331
 2020-03-10 2020-05-29
 Spain hCoV-19/Spain/Galicia201863/2020
 A1- A6T C8782T T9477A C14805T G25455T G25537T G25979T T28144C C28657T C28863T TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_455332
 2020-03-10 2020-05-29
 Spain hCoV-19/Spain/Galicia202076/2020
 ATTAAAGGTTTATACCT1- C241T C3037T C14408T A20268G A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_455356 MT539163 MW008580
 2020-03-10 2020-05-29
 United States SARS-CoV-2/human/USA/GA-EHC-086H/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- T490A C3177T C8782T A9507G T18736C C24034T T26729C G27506C C27635T T27698G G28077C T28144C A29700G AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_455360
 2020-03-10 2020-05-29
 United States hCoV-19/USA/GA-EHC-087I/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- T490A C3177T C8782T T18736C C24034T T26729C C27635T T27698G G28077C T28144C A29700G AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_455840
 2020-03-10 2020-06-01
 Sweden hCoV-19/Sweden/20-50276/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_455841
 2020-03-10 2020-06-01
 Sweden hCoV-19/Sweden/20-50280/2020
 C241T C3037T A12790G C13568T C14408T A23403G

EPI_ISL_455843
 2020-03-10 2020-06-01
 Sweden hCoV-19/Sweden/20-08158/2020
 G1440A G2891A C7011T G25593C

EPI_ISL_455844
 2020-03-10 2020-06-01
 Sweden hCoV-19/Sweden/20-08162/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_455898
 2020-03-10 2020-06-01
 Sweden hCoV-19/Sweden/20-50284/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_455899
 2020-03-10 2020-06-01
 Sweden hCoV-19/Sweden/20-50286/2020
 C241T C1059T C3037T C14408T G15380T A23403G G25563T

EPI_ISL_455900
 2020-03-10 2020-06-01
 Sweden hCoV-19/Sweden/20-50287/2020
 C241T C1059T C3037T C13506T C14408T A23403G G25563T C26201T

EPI_ISL_455901
 2020-03-10 2020-06-01
 Sweden hCoV-19/Sweden/20-50289/2020
 C241T C3037T C14408T A23403G C23575T G23587C

EPI_ISL_456117
 2020-03-10 2020-06-02
 Colombia hCoV-19/Colombia/INS-79253/2020
 C8782T C13384T C17470T G19735T C26088T T28144C G28985T

EPI_ISL_460821
 2020-03-10 2020-06-06
 Netherlands hCoV-19/Netherlands/Overijssel_31/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461001
 2020-03-10 2020-06-06
 Netherlands hCoV-19/Netherlands/Limburg_13/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A T15665C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461103
 2020-03-10 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_668/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- C17410T C24107T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461109
 2020-03-10 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_674/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- A27383G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461111
 2020-03-10 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_676/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T1570C G11083T C14805T T17247C G26144T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_464745
 2020-03-10 2020-06-11
 United Kingdom hCoV-19/England/201141179/2020
 C241T A1461G C3037T C5730T C14408T T20166W C23179Y A23403G GGG28881AAC

EPI_ISL_464783
 2020-03-10 2020-06-11
 United Kingdom hCoV-19/England/201160065/2020
 C241T C3037T GT5743SY C14408T A23403G G24301K G25429T

EPI_ISL_464788
 2020-03-10 2020-06-11
 United Kingdom hCoV-19/England/201160216/2020
 ATG1605- C16247Y G20335T C20806Y

EPI_ISL_464797
 2020-03-10 2020-06-11
 United Kingdom hCoV-19/England/201160628/2020
 A2480G C2558T A9741R G11083T C14284Y C14805T C22088T G26144T

EPI_ISL_464817
 2020-03-10 2020-06-11
 United Kingdom hCoV-19/England/201161180/2020
 C241T C3037T C14408T G19677T A23403G GGG28881AAC

EPI_ISL_464830
 2020-03-10 2020-06-11
 United Kingdom hCoV-19/England/201161300/2020
 A2480G C2558T G11083T C14805T G26144T

EPI_ISL_464831
 2020-03-10 2020-06-11
 United Kingdom hCoV-19/England/201161311/2020
 A2480G C2558T G11083T C14805T G26144T G29254T

EPI_ISL_466949 LR824049
 2020-03-10 2020-06-12
 Switzerland 100025
 C241T C3037T C14408T C15324T G15444T T19372K T19468Y A19548R T22516W A23403G

EPI_ISL_466951 LR824052
 2020-03-10 2020-06-12
 Switzerland 100027
 C241T C3037T C14408T C15324T A19298W C19386Y A19410R A19472M A23403G

EPI_ISL_466953 LR824064
 2020-03-10 2020-06-12
 Switzerland 100029
 C241T C3037T C14408T C15324T G15444T G19501K A23403G

EPI_ISL_466955 LR824063
 2020-03-10 2020-06-12
 Switzerland 100031
 C241T C3037T C14408T C19170T G19509A A23403G GGG28881AAC

EPI_ISL_467951
 2020-03-10 2020-06-16
 United States hCoV-19/USA/CA-SR0416/2020
 C8782T C17747T A17858G C18060T A24694T T28144C

EPI_ISL_467958
 2020-03-10 2020-06-16
 United States hCoV-19/USA/CA-SR0428/2020
 C8782T C17747T A17858G C18060T A24694T T28144C

EPI_ISL_467973
 2020-03-10 2020-06-16
 United States hCoV-19/USA/CA-SR0449/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_469073
 2020-03-10 2020-06-17
 Sweden hCoV-19/Sweden/20-08130/2020
 C241T C3037T C14408T A23403G C23575T G23587C

EPI_ISL_471530
 2020-03-10 2020-06-22
 Czech Republic hCoV-19/Czech Republic/NRL_1885/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A26530G T28010C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471540
 2020-03-10 2020-06-22
 Czech Republic hCoV-19/Czech Republic/NRL_2307/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T22510C A23403G GGG28881AAC C29774T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475553
 2020-03-10 2020-06-23
 Sweden hCoV-19/Sweden/20-08133/2020
 T514C ATG1605- A13512G G16117T C17410T

EPI_ISL_475554
 2020-03-10 2020-06-23
 Sweden hCoV-19/Sweden/20-08136/2020
 ATG1605- T6163A C8748T C12923A C13430T C19366T T28110C

EPI_ISL_475555
 2020-03-10 2020-06-23
 Sweden hCoV-19/Sweden/20-08160/2020
 C1385T C14805T T17247C G26144T

EPI_ISL_475560
 2020-03-10 2020-06-23
 Sweden hCoV-19/Sweden/20-50237/2020
 C241T C3037T C3373A C5654T C14408T A23403G C24034T GGG28881AAC

EPI_ISL_475561
 2020-03-10 2020-06-23
 Sweden hCoV-19/Sweden/20-50243/2020
 T514C ATG1605- G3403A G23856T

EPI_ISL_475831
 2020-03-10 2020-06-25
 Austria hCoV-19/Austria/CeMM0391/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C22450T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475854
 2020-03-10 2020-06-25
 Austria hCoV-19/Austria/CeMM0426/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475879
 2020-03-10 2020-06-25
 Austria hCoV-19/Austria/CeMM0474/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C22450T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475913
 2020-03-10 2020-06-25
 Austria hCoV-19/Austria/CeMM0563/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A8072G C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476813
 2020-03-10 2020-06-26
 Singapore hCoV-19/Singapore/477/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C14408T A23403G G25563T G26143A G26233T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479847
 2020-03-10 2020-07-01
 Japan hCoV-19/Japan/PG-0110/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C11752T C19170A C28253T G28857T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_479848
 2020-03-10 2020-07-01
 Japan hCoV-19/Japan/PG-0111/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C11752T C19170A TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_479849
 2020-03-10 2020-07-01
 Japan hCoV-19/Japan/PG-0113/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C11752T C19170A C29614T TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_480310
 2020-03-10 2020-07-01
 Bulgaria hCoV-19/Bulgaria/41/2020
 C241T C3037T C14408T A23403G A26530G

EPI_ISL_480791 MT703958
 2020-03-10 2020-07-02
 United States SARS-CoV-2/human/USA/FL-BPHL-0140/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C2416T C3037T A4528G C14408T C17410T A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_481077
 2020-03-10 2020-07-02
 Spain hCoV-19/Spain/Madrid_COV004908/2020
 C241T C1572Y C3037T C14408T A20268G A23403G

EPI_ISL_482989
 2020-03-10 2020-07-06
 United States hCoV-19/USA/MN-MDH-1268/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C36T C241T C3037T C14408T A23403G C27046T GGG28881AAC AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_482994
 2020-03-10 2020-07-06
 United States hCoV-19/USA/MN-MDH-1273/2020
 ATTAAAGGTTTATACC1- C8782T C15240T A17858G C18060T C20178T C21774T G25217T T28144C GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_485832 MT739438 MT913051
 2020-03-10 2020-07-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0530/2020
 ATTA1- C241T C1059T C3037T C14408T A23403G G25563T C29548A

EPI_ISL_488223
 2020-03-10 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F705/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488241
 2020-03-10 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F7C9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488306
 2020-03-10 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F7F6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C21789Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488413
 2020-03-10 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F6F9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C14408T A23403G G25563T G26109T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488447
 2020-03-10 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F78D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T11638C G12070K C14408T A23403G C25584A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489990
 2020-03-10 2020-07-14
 Peru hCoV-19/Peru/INS-014/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAA1- C241T C3037T T8800C C14408T C15277T A21917G A23403G A26530G ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_490315
 2020-03-10 2020-07-15
 Peru hCoV-19/Peru/INS-016/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAA1- C241T C3037T G10265A C14408T G14829T A23403G GGG28881AAC ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_491099
 2020-03-10 2020-07-15
 United States hCoV-19/USA/SC-DHEC-0008/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- T490A C3177T C8782T T18736C C24034T T26729C G28077C T28144C TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_491463
 2020-03-10 2020-07-17
 Peru hCoV-19/Peru/INS-013/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAA1- C241T C3037T C14408T C15277T C17410Y C18804Y C19160Y A21917G A23403G A26530G ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_492601
 2020-03-10 2020-07-20
 United Kingdom hCoV-19/England/BRIS-130992/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A481G C3037T C14408T A14691G G20398A A23403G A26530G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492986
 2020-03-10 2020-07-20
 Italy hCoV-19/Italy/NegrarVR_7/2020
 ATTA1- C241T C3037T C14408T A23403G G25909T C27213T T29867A C29870A

EPI_ISL_495116
 2020-03-10 2020-07-22
 United Kingdom hCoV-19/England/BRIS-18547FE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498006
 2020-03-10 2020-07-26
 South Korea hCoV-19/Korea/KCDC2105/2020
 AT1- G5572T G11083T C14805T G26144T G27441T

EPI_ISL_498007
 2020-03-10 2020-07-26
 South Korea hCoV-19/Korea/KCDC2106/2020
 ATTAAAGG1- G5572T G11083T C14805T G26144T G27441T

EPI_ISL_498008
 2020-03-10 2020-07-26
 South Korea hCoV-19/Korea/KCDC2107/2020
 ATT1- G5572T G11083T C14805T G26144T G27441T AAAAAAAAAAAA29892-

EPI_ISL_499815
 2020-03-10 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A4B1C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- ATG1605- C11747T G29032A

EPI_ISL_499824
 2020-03-10 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A48D9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- TGTTATGGT514- A2480G C2558T G11083T C14805T G26144T

EPI_ISL_500037
 2020-03-10 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A4736/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C3373A C14408T C14688T A23403G GGG28881AAC C29870A

EPI_ISL_500057
 2020-03-10 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A496D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G1440A G2891R A10323G C10507T

EPI_ISL_500067
 2020-03-10 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A4A97/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC

EPI_ISL_500407
 2020-03-10 2020-07-28
 Spain hCoV-19/Spain/COV005973/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C1059T C3037T T13006C C14408T G17302T A23403G G25563T C25688T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_500429
 2020-03-10 2020-07-28
 Spain hCoV-19/Spain/COV005997/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_500627
 2020-03-10 2020-07-29
 Australia hCoV-19/Australia/NSW2139/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1397A C2113T G11083T C15720T C18928T T28688C G29374A G29742T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500637
 2020-03-10 2020-07-29
 Australia hCoV-19/Australia/NSW2159/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_508941
 2020-03-10 2020-08-04
 France hCoV-19/France/ARA0731/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T C3037T C14408T A23403G G25563T TTTAAAGTTTCCATTTGGAATCTTGA27265- AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_508942
 2020-03-10 2020-08-04
 France hCoV-19/France/ARA07314/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAA1- C241T G1306T C3037T C14408T C15324T A15860G G18859T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_510274
 2020-03-10 2020-08-06
 Spain hCoV-19/Spain/COV004035/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A20268G A23403G G29734C AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_513414 MT886288
 2020-03-10 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0001/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAA1- C241T C3037T C14408T A23403G GGG28881AAC AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_514338 EPI_ISL_516786
 2020-03-10 2020-08-16
 Peru hCoV-19/Peru/INS-065/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAA1- C241T C3037T C14408T C15277T A21917G A23403G A26530G ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_516801
 2020-03-10 2020-08-24
 Singapore hCoV-19/Singapore/829/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C14408T A23403G G25563T G26143A G26233T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516842
 2020-03-10 2020-08-24
 United Kingdom hCoV-19/England/LOND-125FCAF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A C4021T C10507T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516870
 2020-03-10 2020-08-24
 United Kingdom hCoV-19/England/LOND-125FBEE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A5302R C14408T A23403G G23608R CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_517958
 2020-03-10 2020-08-24
 Peru hCoV-19/Peru/INS-068/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAA1- C241T C3037T C14408T C15277T A21917G A23403G A26530G ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_524472
 2020-03-10 2020-08-28
 Peru hCoV-19/Peru/ARE-INS-087/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAA1- C241T C813T G1212T C3037T C14408T A23403G G25429T ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_525592
 2020-03-10 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-12669-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C12242T C13426T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_525593
 2020-03-10 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-12692-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T G28808T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_525594
 2020-03-10 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-12767-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C7119T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_525595
 2020-03-10 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-12806-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T A8882G C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_525596
 2020-03-10 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-12813-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T G28808T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_525598
 2020-03-10 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-12848-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T A8882G C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_525602
 2020-03-10 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-13459-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T G640A C1059T C3037T C4655T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_527974
 2020-03-10 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42184365/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G AATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29849-

EPI_ISL_534975
 2020-03-10 2020-09-14
 United Kingdom hCoV-19/England/OXON-B47F7/2020
 C241T C3037T C14408T A23403G G24077T G26167T

EPI_ISL_535720
 2020-03-10 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00213733/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T C3096T C9170T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535721
 2020-03-10 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00213861/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C3037T C14408T G18534A A23403G G25563T G28086R T28088W CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_535723
 2020-03-10 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00214023/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537426
 2020-03-10 2020-09-16
 Spain hCoV-19/Spain/RI-CSIC-99005884/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C583T C8782T T9477A C14805T G25979T C26527T T28144C C28657T C28863T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_537828
 2020-03-10 2020-09-16
 Spain hCoV-19/Spain/RI-CSIC-98002305/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T T13006C C14408T G17302T C21762Y A23403G G25563T C25688T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_538823
 2020-03-10 2020-09-17
 United Kingdom hCoV-19/England/LEED-2AA15E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G23426T C23575T G23587C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539562
 2020-03-10 2020-09-18
 Spain hCoV-19/Spain/EX-ISCIII-201963/2020
 C241T C3037T C14408T A20268G A23403G C27476T

EPI_ISL_539564
 2020-03-10 2020-09-18
 Spain hCoV-19/Spain/GA-ISCIII-201859/2020
 A1- A27C C8782T T9477A C14805T GACATGAGTA21394- T21434A G25537T G25979T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539565
 2020-03-10 2020-09-18
 Spain hCoV-19/Spain/GA-ISCIII-202075/2020
 A1- T3A G11083T C19366T T21181C G26144T G29474T G29742T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_547450
 2020-03-10 2020-09-24
 Netherlands hCoV-19/Curacao/CW-RIVM-10092/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T1606C G29032A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547451
 2020-03-10 2020-09-24
 Netherlands hCoV-19/Curacao/CW-RIVM-10093/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T1606C G29032A C29754T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547452
 2020-03-10 2020-09-24
 Netherlands hCoV-19/Curacao/CW-RIVM-10094/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T1606C G29032A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547461
 2020-03-10 2020-09-24
 Netherlands hCoV-19/Netherlands/GE-RIVM-10095/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G28001T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547491
 2020-03-10 2020-09-24
 Netherlands hCoV-19/Netherlands/NH-RIVM-10047/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C T1606C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547501
 2020-03-10 2020-09-24
 Netherlands hCoV-19/Netherlands/NH-RIVM-10103/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2000C C3037T C14408T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547502
 2020-03-10 2020-09-24
 Netherlands hCoV-19/Netherlands/NH-RIVM-10104/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A C7011T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549176
 2020-03-10 2020-09-28
 Sweden hCoV-19/Sweden/RV-FOI-2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C1912T C25047T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560621
 2020-03-10 2020-09-29
 France hCoV-19/France/GE8771/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G G28690T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560972
 2020-03-10 2020-09-30
 Sweden hCoV-19/Sweden/20-50303/2020
 C241T C3037T C4002T G10097A C13536T C14408T A23403G G23663T C23731T T24311C GGG28881AAC

EPI_ISL_569250
 2020-03-10 2020-10-02
 France hCoV-19/France/IHU-0021/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1059T C3037T G11083T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

MT292570
 2020-03-10 2020-04-05
 Spain SARS-CoV-2/human/ESP/Valencia17/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C29144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT292572
 2020-03-10 2020-04-05
 Spain SARS-CoV-2/human/ESP/Valencia11/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T T18834C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT292575
 2020-03-10 2020-04-05
 Spain SARS-CoV-2/human/ESP/Valencia16/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT325575
 2020-03-10 2020-04-10
 United States SARS-CoV-2/human/USA/GA_2343/2020
 T490A C3177T C8782T T18736C C21588T C24034T T26729C G28077C T28144C A29700G AAAAAAAAAAAAAAAAAAAAA29883-

MT459850
 2020-03-10 2020-05-11
 Greece SARS-CoV-2/human/GRC/134_32124/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- G11083T C14805T G26144T G28842T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

MT459851
 2020-03-10 2020-05-11
 Greece SARS-CoV-2/human/GRC/135_32174/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

MT764174
 2020-03-10 2020-07-15
 United States SARS-CoV-2/human/USA/COVID20-0008/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- T490A C3177T C8782T T18736C C24034T T26729C G28077C T28144C TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

MT810553
 2020-03-10 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0416-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C8782T C17747T A17858G C18060T A24694T T28144C CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810560
 2020-03-10 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0428-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C8782T C17747T A17858G C18060T A24694T T28144C CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810573
 2020-03-10 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0449-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C8782T C17747T A17858G C18060T T28144C CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT873332
 2020-03-10 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00011/2020
 ATTA1- C8782T C17747T A17858G C18060T C21789T T28144C

MT956918
 2020-03-10 2020-09-03
 Spain SARS-CoV-2/human/ESP/HUD-70062002/2020
 C241T C3037T C14408T A23403G C29250T

EPI_ISL_414648
 2020-03-11 2020-03-16
 United States hCoV-19/USA/CA-PC101P/2020
 C241T C3037T C14408T C18814T A23403G

EPI_ISL_415471 LR878338
 2020-03-11 2020-03-17
 Netherlands hCoV-19/Netherlands/NA_15/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T A11438G C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415472 LR878349
 2020-03-11 2020-03-17
 Netherlands hCoV-19/Netherlands/NA_16/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T C14408T G20275A A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415501 LR878342
 2020-03-11 2020-03-17
 Netherlands hCoV-19/Netherlands/NoordBrabant_44/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- T514C ATG1605- C17410T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415503 LR878356
 2020-03-11 2020-03-17
 Netherlands hCoV-19/Netherlands/NoordBrabant_46/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C8782T T9477A G10523A C14805T G18662T G25273C G25979T T28144C C28657T C28863T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415505 LR878348
 2020-03-11 2020-03-17
 Netherlands hCoV-19/Netherlands/NoordBrabant_48/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- T514C ATG1605- T3541C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415506 LR878353
 2020-03-11 2020-03-17
 Netherlands hCoV-19/Netherlands/NoordBrabant_49/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- T514C ATG1605- TCA12620- C17410T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415514 LR878082
 2020-03-11 2020-03-17
 Netherlands hCoV-19/Netherlands/NoordBrabant_58/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415515 LR878091
 2020-03-11 2020-03-17
 Netherlands hCoV-19/Netherlands/NoordBrabant_59/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C1059T C3037T C14408T A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415516 LR878078
 2020-03-11 2020-03-17
 Netherlands hCoV-19/Netherlands/NoordBrabant_60/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- ATG1605- T6163A C12923A C13430T C19366T T28110C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415534 LR878075
 2020-03-11 2020-03-17
 Netherlands hCoV-19/Netherlands/ZuidHolland_30/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C1059T C3037T C14408T TTA21991- A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_416024
 2020-03-11 2020-03-19
 United Kingdom hCoV-19/Wales/PHW35/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G431A C20270T C28725T A29683T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_416448 MT252691
 2020-03-11 2020-03-21
 United States SARS-CoV-2/human/USA/WA-UW92/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAA1- C8782T C17747T A17858G C18060T T28144C AAAA29900-

EPI_ISL_416480
 2020-03-11 2020-03-22
 Georgia hCoV-19/Georgia/Tb-537/2020
 ATT1- A915G G11083T G23522C G26144T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_416498
 2020-03-11 2020-03-22
 France hCoV-19/France/IDF2256/2020
 C241T C1059T C3037T C10582T C14408T A23403G C23707T G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_416499
 2020-03-11 2020-03-22
 France hCoV-19/France/IDF2278/2020
 C241T C3037T C14408T C15324T A23403G C27208T AAAAAAAAAAAAAAAAAAAAAA29882-

EPI_ISL_416524
 2020-03-11 2020-03-22
 Japan hCoV-19/Japan/SMU-0311S2/2020
 G101A C241T C3037T C14408T A23403G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_416525
 2020-03-11 2020-03-22
 Japan hCoV-19/Japan/SMU-0311S3/2020
 C241T C3037T C14408T A23403G C29743T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_416641 MT252767
 2020-03-11 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW103/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C8782T C17747T A17858G C18060T T28144C A29871C AAA29901-

EPI_ISL_416642 MT252768
 2020-03-11 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW104/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C1059T C3037T C14408T G15760A A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_416643 MT252769
 2020-03-11 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW105/2020
 ATTAAAGG1- C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_416644 MT252770
 2020-03-11 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW106/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- G6220A C8782T C17747T A17858G C18060T T28144C G29862A AAA29901-

EPI_ISL_416646 MT252772
 2020-03-11 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW108/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- A1515G C9223T G11083T C14805T T17247C G26144T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_416647 MT252773
 2020-03-11 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW109/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACT1- C241T C1059T C3037T C14408T A23403G G25563T G29553A A29903-

EPI_ISL_416648 MT252774
 2020-03-11 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW110/2020
 ATTAAA1- C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_416649 MT252775
 2020-03-11 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW111/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAA1- C8782T C17747T A17858G C18060T T27384C T28144C A29903-

EPI_ISL_416651 MT252777
 2020-03-11 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW113/2020
 ATTAAA1- GTTT8CACA T41- C6310T C8782T C17747T A17858G C18060T G27327T T28144C G28378T AAA29901-

EPI_ISL_416652 MT252778
 2020-03-11 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW114/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAA1- G101A C6696T C8782T C17747T A17858G C18060T T28144C C29416T

EPI_ISL_416653 MT252779
 2020-03-11 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW115/2020
 ATTAAAGG1- A74C C241T C1059T C3037T C14408T A23403G G25563T G29553A

EPI_ISL_416654 MT252780
 2020-03-11 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW116/2020
 ATTAAA1- -55C A6693G C8782T C17747T A17858G C18060T T28144C

EPI_ISL_416655 MT252781
 2020-03-11 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW117/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C1059T C3037T C14408T A23403G G25302T G25563T AAAA29900-

EPI_ISL_416656 MT252782
 2020-03-11 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW118/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C8782T C17747T A17858G C18060T T28144C

EPI_ISL_416657 MT252783
 2020-03-11 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW119/2020
 AT1GA A4T ACC35TTH C8782T C17747T A17858G C18060T T28144C TTC29728GGG CC29732GA AG29735CT A29740T G29764T A29768C A29771C A29776T

EPI_ISL_416658 MT252784
 2020-03-11 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW120/2020
 A1- C241T C3037T C14408T A23403G -29904ANANANA

EPI_ISL_416659 MT252785
 2020-03-11 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW121/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_416668 MT252748
 2020-03-11 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW130/2020
 ATTAAAG1- AACC34HTTH C8782T C17747T A17858G C18060T T27384C T28144C -29904AAAAAAAAAA

EPI_ISL_416669 MT252749
 2020-03-11 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW131/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAA1- A3635G C8782T C17747T A17858G C18060T T28144C TG29867-A C29870A

EPI_ISL_416674 MT252752
 2020-03-11 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW136/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- AACC34CTTT C241T C3037T C14408T C18877T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_416675 MT252753
 2020-03-11 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW137/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- AACC34CTTH A1515G G1944A C9223T G11083T C14805T T17247C A17799G C23987T G26144T G29862A -29904ANANAHATANA

EPI_ISL_416676 MT252754
 2020-03-11 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW138/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGAT1- C241T C3037T C14408T A23403G GGG28881AAC CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_416678 MT252756
 2020-03-11 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW140/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAA1- C241T C1059T C3037T C14408T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_416679 MT252757
 2020-03-11 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW141/2020
 ATTAAAGGTTTATACCTTCCCAGG1- CAAACCAACC28- C8782T C17059A C17747T A17858G C18060T T28144C T28229G A29903C

EPI_ISL_416680 MT252758
 2020-03-11 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW142/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAAC1- C8782T C9565T C17747T A17858G C18060T T28144C G29688T G29692T G29862A AAAAAAA29897-

EPI_ISL_416681 MT252759
 2020-03-11 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW143/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- -55C C8782T C17747T A17858G C18060T T28144C GA29868VT

EPI_ISL_417031
 2020-03-11 2020-03-24
 Australia hCoV-19/Australia/QLDID919/2020
 ATTAAA1- C8782T C17747T A17858G C18060T A24694T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_417032
 2020-03-11 2020-03-24
 Australia hCoV-19/Australia/QLDID920/2020
 ATTAAA1- C241T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_417033
 2020-03-11 2020-03-24
 Australia hCoV-19/Australia/QLDID921/2020
 ATTAA1- C6312A G11083T C13730T C23929T C28311T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_417211
 2020-03-11 2020-03-25
 New Zealand hCoV-19/NewZealand/CoV001/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTT1- T514C ATG1605- C22591T TGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29840-

EPI_ISL_417212
 2020-03-11 2020-03-25
 New Zealand hCoV-19/NewZealand/CoV002/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGA1- C1684T G11083- G13627T C14805T C15540T G26144T A28338G A29403G GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_417397
 2020-03-11 2020-03-25
 Australia hCoV-19/Australia/NSW39/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A23403G CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_417398
 2020-03-11 2020-03-25
 Australia hCoV-19/Australia/NSW40/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- G1397A C2113T A9483G G11083T C18928T A19974G T28688C G29374A CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_417405
 2020-03-11 2020-03-25
 Australia hCoV-19/Australia/NSW52/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- G11083T C14805T T17247C G26144T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_417406
 2020-03-11 2020-03-25
 Australia hCoV-19/Australia/NSW53/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- A1079C G1397A T7225C C9319T G11083T C19862T T27384C T28688C CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_417458 MT582487
 2020-03-11 2020-03-26
 Germany SARS-CoV-2/human/DEU/NRW-13/2020
 C241T C3037T C14408T A23403G GGG28881AAC G29540T

EPI_ISL_417459 MT582486
 2020-03-11 2020-03-26
 Germany SARS-CoV-2/human/DEU/NRW-14/2020
 G1440A G2891A

EPI_ISL_417460 MT582485
 2020-03-11 2020-03-26
 Germany SARS-CoV-2/human/DEU/NRW-15/2020
 C241Y T514Y C1059Y C3037Y C14408Y C17410T A23403R G25563K G29422K

EPI_ISL_417461 MT582484
 2020-03-11 2020-03-26
 Germany SARS-CoV-2/human/DEU/NRW-16/2020
 G1440A G2891A

EPI_ISL_417462 MT582483
 2020-03-11 2020-03-26
 Germany SARS-CoV-2/human/DEU/NRW-17/2020
 G1440A G2891A

EPI_ISL_417690
 2020-03-11 2020-03-27
 Iceland hCoV-19/Iceland/125/2020
 C218T C241T C1059T C1302T C3037T G8911T C14408T T14907G A23403G G25563T G29553A

EPI_ISL_417691
 2020-03-11 2020-03-27
 Iceland hCoV-19/Iceland/111/2020
 C241T C3037T C14408T A23403G

EPI_ISL_417722
 2020-03-11 2020-03-27
 Iceland hCoV-19/Iceland/110/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_417748
 2020-03-11 2020-03-27
 Iceland hCoV-19/Iceland/109/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_417770
 2020-03-11 2020-03-27
 Iceland hCoV-19/Iceland/112/2020
 C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_417779
 2020-03-11 2020-03-27
 Iceland hCoV-19/Iceland/106/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_417783
 2020-03-11 2020-03-27
 Iceland hCoV-19/Iceland/123/2020
 C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_417871
 2020-03-11 2020-03-27
 Iceland hCoV-19/Iceland/9/2020
 C8782T T9445C C17747T A17858G A24694T T28144C G29140T

EPI_ISL_417924
 2020-03-11 2020-03-27
 Colombia hCoV-19/Colombia/INS-79256/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17470T C26088T T28144C G28985T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417956
 2020-03-11 2020-03-27
 Spain hCoV-19/Spain/Madrid_H5_34/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A20268G A23403G ACCACACAAGGCAGATGGGCTATATAAACGTTTTC29544- G29734C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_418002
 2020-03-11 2020-03-28
 Portugal hCoV-19/Portugal/PT0017/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_418211
 2020-03-11 2020-03-29
 Senegal hCoV-19/Senegal/082/2020
 C241T C3037T C14408T A23403G G27261T

EPI_ISL_418212
 2020-03-11 2020-03-29
 Senegal hCoV-19/Senegal/087/2020
 C241T C3037T C14408T A23403G G27261T

EPI_ISL_418324
 2020-03-11 2020-03-11
 Canada hCoV-19/Canada/ON_PHL3318/2020
 A1- G1397A C9693T G11083T G20887A C21627T T28688C C28830T G29742T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418332
 2020-03-11 2020-03-11
 Canada hCoV-19/Canada/ON_PHL0052/2020
 A1- C8782T C17747T A17858G C18060T C21614T A24694T G27478T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418347
 2020-03-11 2020-03-11
 Canada hCoV-19/Canada/ON_PHL3741/2020
 A1- C241T C2416T C3037T C14408T A23403G G25563T A29413G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418352
 2020-03-11 2020-03-11
 Canada hCoV-19/Canada/ON_PHL5672/2020
 A1- C241T C1059T C3037T C14408T A23403G G25563T G29422T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418360
 2020-03-11 2020-03-11
 Canada hCoV-19/Canada/ON_PHL3692/2020
 A1- C241T C1059T C3037T C14408T A18702T A23403G G25563T G28373T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418363
 2020-03-11 2020-03-11
 Canada hCoV-19/Canada/ON_PHL3695/2020
 A1- C241T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418370
 2020-03-11 2020-03-11
 Canada hCoV-19/Canada/ON_PHL0654/2020
 A1- C241T C3037T C3373A C9733T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418374
 2020-03-11 2020-03-11
 Canada hCoV-19/Canada/ON_PHL4232/2020
 A1- C241T C1059T C3037T C14408T T18212A A23403G G23593A A23597T T23600C G25563T G28368A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418669
 2020-03-11 2020-03-30
 United Kingdom hCoV-19/England/20116022902/2020
 T586C C5974T C11074T G11083T G13627T C14805T C15540T G26144T A28338G C28961T

EPI_ISL_418670
 2020-03-11 2020-03-30
 United Kingdom hCoV-19/England/20116025603/2020
 ATG1605- C25207T A25594C

EPI_ISL_418816
 2020-03-11 2020-03-31
 Canada hCoV-19/Canada/BC_0443574/2020
 C8782T C17747T A17858G C18060T A24694T T28144C

EPI_ISL_418831
 2020-03-11 2020-03-31
 Canada hCoV-19/Canada/BC_5275718/2020
 C241T C3037T C14408T C18348T C18877T A23403G G25563T

EPI_ISL_418832
 2020-03-11 2020-03-31
 Canada hCoV-19/Canada/BC_5282984/2020
 C228T G1397A C5467T G9479T A9514G G11083T G26720C T28688C T28835C G29742T

EPI_ISL_418833
 2020-03-11 2020-03-31
 Canada hCoV-19/Canada/BC_5306970/2020
 C241T C3037T C14408T C18877T A23403G G25563T

EPI_ISL_418834
 2020-03-11 2020-03-31
 Canada hCoV-19/Canada/BC_5522039/2020
 A187G C241T C3037T C14408T C17676T C21721T A23403G

EPI_ISL_418835
 2020-03-11 2020-03-31
 Canada hCoV-19/Canada/BC_5979789/2020
 C241T C3037T C6762T C14408T C18348T C18877T A23403G G25563T

EPI_ISL_418841
 2020-03-11 2020-03-31
 Canada hCoV-19/Canada/BC_6981299/2020
 C8782T G14197A C17747T A17858G C18060T T28144C

EPI_ISL_418842
 2020-03-11 2020-03-31
 Canada hCoV-19/Canada/BC_6997898/2020
 A187G C241T C3037T C14408T A23403G

EPI_ISL_418845
 2020-03-11 2020-03-31
 Canada hCoV-19/Canada/BC_7515663/2020
 C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T

EPI_ISL_418853
 2020-03-11 2020-03-31
 Canada hCoV-19/Canada/BC_8894200/2020
 C8782T A17858G C18060T T28144C

EPI_ISL_418854
 2020-03-11 2020-03-31
 Canada hCoV-19/Canada/BC_8896915/2020
 C8782T A17858G C18060T T25468C T28144C

EPI_ISL_418855
 2020-03-11 2020-03-31
 Canada hCoV-19/Canada/BC_8897642/2020
 C8782T A17858G C18060T T28144C

EPI_ISL_418965 MT334541
 2020-03-11 2020-03-31
 United States SARS-CoV-2/human/USA/UT-00023/2020
 A1- C241T C3037T C14408T C16289T A23403G G25429T C29870A

EPI_ISL_418967 MT334542
 2020-03-11 2020-03-31
 United States SARS-CoV-2/human/USA/UT-00025/2020
 C241T C1059T C3037T C14408T A23403G G25563T C29870A

EPI_ISL_419301 LC547523
 2020-03-11 2020-04-02
 Japan hCoV-19/Japan/P4-1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C3037T C14408T A23403G GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_419573
 2020-03-11 2020-04-02
 Luxembourg hCoV-19/Luxembourg/LNS1874423/2020
 C241T C3037T G10368A C14408T G18844R A20268G A23403G G29734C TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_419587
 2020-03-11 2020-04-02
 Luxembourg hCoV-19/Luxembourg/LNS4691488/2020
 C241T C829Y C3037T G11858A C14408T C15324T A23403G GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_419590
 2020-03-11 2020-04-02
 Luxembourg hCoV-19/Luxembourg/LNS5032431/2020
 C241T C1059T C3037T C14408T A23403G G25563T A27020R AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_419606
 2020-03-11 2020-04-02
 Luxembourg hCoV-19/Luxembourg/LNS9862689/2020
 C241T C1059T C3037T C14408T A23403G G25563T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_419666
 2020-03-11 2020-04-03
 Austria hCoV-19/Austria/CeMM0013/2020
 C241T C1059T C3037T C14408T G19962R A23403G G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_419711 MT322407
 2020-03-11 2020-04-08
 United States SARS-CoV-2/human/USA/VA-DCLS-0017/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C8782T C17747T A17858G C18060T T28144C G29868A C29870A

EPI_ISL_419713 MT322411
 2020-03-11 2020-04-08
 United States SARS-CoV-2/human/USA/VA-DCLS-0021/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- A361G C8782T G22468T T25559G T28144C G28878A G29742A

EPI_ISL_419756 MT450953
 2020-03-11 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC38/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C10350T C14408T C15277T C15324T G20887R A23403G

EPI_ISL_419757 MT450954
 2020-03-11 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC39/2020
 A1- C21T C241T C1059T C3037T A4015G G4951A C14408T A23403G G25563T

EPI_ISL_419758 MT450955
 2020-03-11 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC40/2020
 A1- C8782T T10771C C17747T A17858G C18060T T28144C G29751T

EPI_ISL_419760 MT450956
 2020-03-11 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC41/2020
 ATTA1- C8782T T10771C C17747T A17858G C18060T T28144C C28315T G29751T

EPI_ISL_419761 MT450957
 2020-03-11 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC42/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- A30T C6312A G11083T C13730T C23929T C28311T

EPI_ISL_419763 MT450958
 2020-03-11 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC43/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C5457A C14408T A23403G GGG28881AAC

EPI_ISL_419767 MT450959
 2020-03-11 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC44/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23403G A26530G

EPI_ISL_419802 MT450960
 2020-03-11 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC45/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_419816 MT450961
 2020-03-11 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC46/2020
 ATTA1- A1646G C8782T C17747T A17858G C18060T T28144C

EPI_ISL_420028 MT322408
 2020-03-11 2020-04-08
 United States SARS-CoV-2/human/USA/VA-DCLS-0018/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C37S C8782T C17747T A17858G C18060T T28144C C29870A

EPI_ISL_420029 MT322409
 2020-03-11 2020-04-08
 United States SARS-CoV-2/human/USA/VA-DCLS-0019/2020
 ATT1- C8782T C17747T A17858G C18060T T28144C C29870A

EPI_ISL_420109
 2020-03-11 2020-04-05
 Singapore hCoV-19/Singapore/32/2020
 ATTAAAGGTTT1- TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_420110
 2020-03-11 2020-04-05
 Singapore hCoV-19/Singapore/33/2020/P1
 ATTAAAGGTTTA1- A4473G TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_420125
 2020-03-11 2020-04-05
 Spain hCoV-19/Spain/Valencia41/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G21786A A23403G G29009A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420146
 2020-03-11 2020-04-05
 Norway hCoV-19/Norway/1955/2020
 ATTAAAGGT1- C241T C3037T C14408T A23403G A26530G

EPI_ISL_420899
 2020-03-11 2020-04-07
 Germany hCoV-19/Germany/BAV-V2010492/2020
 C241T C3037T C14408T A23403G C27046T C28344A GGG28881AAC

EPI_ISL_421351 MT370892
 2020-03-11 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08122/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C3037T G10265A C14408T A23403G GGG28881AAC AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_421500
 2020-03-11 2020-04-08
 France hCoV-19/France/HF2306/2020
 C241T C1059T C3037T T3710C C10582T C14408T A23403G G25563T G29705T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_422643 LR877943
 2020-03-11 2020-04-11
 Netherlands hCoV-19/Netherlands/Gelderland_7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4255T C14408T A23403G A26530G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422676 LR877723
 2020-03-11 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_132/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- C27920T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422677 LR877725
 2020-03-11 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_133/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- C25511T C29719T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422678 LR877731
 2020-03-11 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_134/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1380T C3037T C14408T A23403G A24862G A26871C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422840 LR878156
 2020-03-11 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_80/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- C17410T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422842 LR878171
 2020-03-11 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_82/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- C2485T C17410T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422843 LR878184
 2020-03-11 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_83/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- C17410T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422866 LR878115
 2020-03-11 2020-04-11
 Netherlands hCoV-19/Netherlands/NoordBrabant_70/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C20647T G22661T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422867 LR878123
 2020-03-11 2020-04-11
 Netherlands hCoV-19/Netherlands/NoordBrabant_71/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C20647T G22661T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422873 LR877741
 2020-03-11 2020-04-11
 Netherlands hCoV-19/Netherlands/NoordBrabant_77/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422875 LR877732
 2020-03-11 2020-04-11
 Netherlands hCoV-19/Netherlands/NoordBrabant_80/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- C17410T T21158C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422876 LR877735
 2020-03-11 2020-04-11
 Netherlands hCoV-19/Netherlands/NoordBrabant_81/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422897 LR878128
 2020-03-11 2020-04-11
 Netherlands hCoV-19/Netherlands/Utrecht_20/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C20647T G22661T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_424672
 2020-03-11 2020-04-13
 Mexico hCoV-19/Mexico/Puebla-InDRE_05/2020
 C241T A1308G C3037T C14408T C17639T A20268G A23403G G27506T C28638T A29700G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_425212
 2020-03-11 2020-04-14
 Spain hCoV-19/Spain/Valencia88/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C29144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425213
 2020-03-11 2020-04-14
 Spain hCoV-19/Spain/Valencia89/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425466
 2020-03-11 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10DEEA/2020
 ATG1605- C20270T

EPI_ISL_425672
 2020-03-11 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR13/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C20936T C23086T A23403G C27046T GGG28881AAC GCTAGAATG28895- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425758
 2020-03-11 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR29/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A761G C1059T C3037T A6825C C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425821
 2020-03-11 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB015/2020
 C241T A1515G C14805T A17799G

EPI_ISL_425822
 2020-03-11 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB016/2020
 C241T C1059T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_425836
 2020-03-11 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB030/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_425842
 2020-03-11 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB036/2020
 C241T C1059T C3037T C14408T A23403G

EPI_ISL_425844
 2020-03-11 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB038/2020
 C3037T C14408T A23403G GGG28881AAC

EPI_ISL_425847
 2020-03-11 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB042/2020
 C241T C3037T C14408T G16075T T18689A A23403G C27046T GGG28881AAC

EPI_ISL_426294
 2020-03-11 2020-04-15
 United States hCoV-19/USA/NY-Wadsworth-13468-02/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T G1738T C3037T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426513
 2020-03-11 2020-04-17
 United States hCoV-19/USA/AZ-TG268903/2020
 C8782T T11194C C15240T C17747T A17858G C18060T C21774T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426514
 2020-03-11 2020-04-17
 United States hCoV-19/USA/AZ-TG268905/2020
 C241T C379A C1059T C1267T C3037T T7672C C14408T C22802G A23403G G25563T A29871C AAAAAAAAAAAAAAAAAAAAAA29882-

EPI_ISL_427300
 2020-03-11 2020-04-18
 Brazil hCoV-19/Brazil/RJ-477/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C14408T A23403G A26927G GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_427301
 2020-03-11 2020-04-18
 Brazil hCoV-19/Brazil/RJ-477i/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T A23403G A26927G GGG28881AAC GAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29781-

EPI_ISL_428355
 2020-03-11 2020-04-20
 France hCoV-19/France/IDF2251/2020
 T10A C241T C1059T C3037T T6175C C10582T C14408T A23403G C23707T G25563T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_428356
 2020-03-11 2020-04-20
 France hCoV-19/France/IDF2252/2020
 C241T C1059T C3037T C10582T C14408T A23403G C23707T G25563T GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_428357
 2020-03-11 2020-04-20
 France hCoV-19/France/IDF2253/2020
 C241T C1059T C3037T C10582T C14408T A23403G C23707T G25563T AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_428677
 2020-03-11 2020-04-21
 Spain hCoV-19/Spain/Madrid_LP20_2327/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C8782T T9477A G12522A C14805T G25979T T28144C C28657T C28863T TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856C

EPI_ISL_428681
 2020-03-11 2020-04-21
 Spain hCoV-19/Spain/Madrid_LP27_2548/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A20268G A23403G TGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29840CT

EPI_ISL_428682
 2020-03-11 2020-04-21
 Spain hCoV-19/Spain/Madrid_LP30_2226/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C7279T C14408T A20268G A23403G -29826T AATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29849-

EPI_ISL_428703
 2020-03-11 2020-04-21
 Spain hCoV-19/Spain/Madrid_H12_3304/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428704
 2020-03-11 2020-04-21
 Spain hCoV-19/Spain/Madrid_H12_3405/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T12364A A19719T C26088T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428860
 2020-03-11 2020-04-22
 Russia hCoV-19/Russia/Moscow-62505/2020
 C241T C3037T C14408T C18568T A23403G A26530G

EPI_ISL_428861
 2020-03-11 2020-04-22
 Russia hCoV-19/Russia/Moscow-62501/2020
 C241T C3037T C14408T G18310A A23403G A26530G

EPI_ISL_428862
 2020-03-11 2020-04-22
 Russia hCoV-19/Russia/Moscow-62506/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_428863
 2020-03-11 2020-04-22
 Russia hCoV-19/Russia/Moscow-62508/2020
 C241T C3037T C10208T C14408T A23403G G25459T GGG28881AAC

EPI_ISL_428864
 2020-03-11 2020-04-22
 Russia hCoV-19/Russia/Moscow-62502/2020
 C241T C3037T C10208T C14408T A23403G G25459T GGG28881AAC

EPI_ISL_428865
 2020-03-11 2020-04-22
 Russia hCoV-19/Russia/Lipetsk-62704/2020
 C241T C2939T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_428866
 2020-03-11 2020-04-22
 Russia hCoV-19/Russia/Lipetsk-62707/2020
 C241T C3037T C14408T A19126G A23403G C27046T GGG28881AAC

EPI_ISL_428867
 2020-03-11 2020-04-22
 Russia hCoV-19/Russia/Krasnodar-63401/2020
 C241T C3037T C14408T A23403G A23618G C27046T GGG28881AAC

EPI_ISL_429115
 2020-03-11 2020-04-23
 Sweden hCoV-19/Sweden/20-08142/2020
 G1440A G2891A C7011T

EPI_ISL_429117
 2020-03-11 2020-04-23
 Sweden hCoV-19/Sweden/20-08145/2020
 C241T C3037T C14408T G17140T A23403G C27046T GGG28881AAC

EPI_ISL_429118
 2020-03-11 2020-04-23
 Sweden hCoV-19/Sweden/20-08146/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429119
 2020-03-11 2020-04-23
 Sweden hCoV-19/Sweden/20-08148/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_429120
 2020-03-11 2020-04-23
 Sweden hCoV-19/Sweden/20-08149/2020
 C241T C3037T G11083T A13947T C14408T A23403G GGG28881AAC

EPI_ISL_429121
 2020-03-11 2020-04-23
 Sweden hCoV-19/Sweden/20-08151/2020
 C241T C1059T C3037T C14408T G17721T A23403G G25563T C27294T

EPI_ISL_429122
 2020-03-11 2020-04-23
 Sweden hCoV-19/Sweden/20-08155/2020
 C241T C3037T A13947T C14408T A23403G GGG28881AAC

EPI_ISL_429282
 2020-03-11 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH24/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429283
 2020-03-11 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH25/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429284
 2020-03-11 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH26/2020
 C241T C3037T C14408T A20268G A23403G G29734C

EPI_ISL_429285
 2020-03-11 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH27/2020
 C241T C1059T C1302T C3037T C14408T A23403G G25563T C25658T

EPI_ISL_429287
 2020-03-11 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH29/2020
 C241T C3037T C14408T A23403G C23575T G23587C

EPI_ISL_429406
 2020-03-11 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI213/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429407
 2020-03-11 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI215/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429517
 2020-03-11 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI419/2020
 C241T C1059T C3037T G5518T C14408T C15989T A23403G G25563T C29546T

EPI_ISL_429518
 2020-03-11 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI420/2020
 C241T C3037T G10870T C14408T C23086T A23403G C27046T GGG28881AAC

EPI_ISL_429520
 2020-03-11 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI423/2020
 C241T C1059T C3037T C14408T A15189G A23403G G25563T C28171T

EPI_ISL_429521
 2020-03-11 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI424/2020
 C241T C1059T C1302T A2444G C3037T C14408T A23403G G25563T

EPI_ISL_430282
 2020-03-11 2020-04-26
 United States hCoV-19/USA/WA-S244/2020
 C8782T C17747T A17858G C18060T C26735T C27577T T28144C

EPI_ISL_430289 MT632570
 2020-03-11 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S251/2020
 C6310T C8782T C17747T A17858G C18060T G27327T T28144C

EPI_ISL_430719
 2020-03-11 2020-04-27
 Spain hCoV-19/Spain/Madrid-LP29/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C217T TCAAAGGGATTGTACAGAAAGTGTGTT2402- A2443G -3852A TT4273GA AGAGTGT6876- TCTACTCAACCGCTGCTTTAGGTGTTTTAATGTCTAATTTAGGCATGCCTTCTTACTGTACTGGTTACAGAGAAGGCTATTTGAACTCTACTAATGTCACTATTGCAACCTACTGTACTGGTTCTATACCTTGTAGTGTTTGTCTT6996- G11083T A21551T G26144T ATTGTGTGCGTACTGCTGCAATATTGTTAACGTGAGTCTTGTAAAACCTTCTTTTTACGTTTACTCTCGTGTTAAAAATCTGAATTCTTCTAGAGTTCCTGATCTTCTGG26358C C27883T AATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29849-

EPI_ISL_430721
 2020-03-11 2020-04-27
 Spain hCoV-19/Spain/Madrid-LP33/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T G7393T C14408T G15327T A20268G A23403G -29826T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_430848
 2020-03-11 2020-04-28
 Sweden hCoV-19/Sweden/20-08144/2020
 G1440A G2891A C7011T G11083T

EPI_ISL_430849
 2020-03-11 2020-04-28
 Sweden hCoV-19/Sweden/20-08147/2020
 C241T C1059T C3037T A12393G C14408T G20419T A23403G G25563T C27294T

EPI_ISL_430850
 2020-03-11 2020-04-28
 Sweden hCoV-19/Sweden/20-08150/2020
 C241T C1059T C3037T C14408T G17721T A23403G G25563T C27294T

EPI_ISL_430851
 2020-03-11 2020-04-28
 Sweden hCoV-19/Sweden/20-08152/2020
 C241T C1059T C3037T C14408T G20419T A23403G G25563T C27294T

EPI_ISL_430852
 2020-03-11 2020-04-28
 Sweden hCoV-19/Sweden/20-08154/2020
 G600A G1820A A2480G C2558T T8599C G11083T C14805T C14925T G26144T

EPI_ISL_430853
 2020-03-11 2020-04-28
 Sweden hCoV-19/Sweden/20-08167/2020
 C241T C1059T A2219G C3037T G3340T C14408T C15237T C23185T A23403G G25563T

EPI_ISL_430867 MT412252
 2020-03-11 2020-04-28
 United States SARS-CoV-2/human/USA/WA-UW-517/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- ACC31TTY C36T T7084C C8782T C17747T A17858G C18060T C21410T T28144C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_430870 MT412253
 2020-03-11 2020-04-28
 United States SARS-CoV-2/human/USA/WA-UW-518/2020
 ATTAAAGGTTTAT1- A14T CCCAGGTAACAAACCAA19- C36T C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_430878 MT412246
 2020-03-11 2020-04-28
 United States SARS-CoV-2/human/USA/WA-UW-525/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C8782T A14604G C17747T A17858G C18060T C21911T T28144C AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_430879 MT412242
 2020-03-11 2020-04-28
 United States SARS-CoV-2/human/USA/UNKNOWN-UW-526/2020
 TAAAGGTTTATACCTTCCCAGGTAACAAA3- C36T C241T C1059T C3037T C14408T A23403G G25563T -29904AAAAAAAAAAA

EPI_ISL_430882 MT412245
 2020-03-11 2020-04-28
 United States SARS-CoV-2/human/USA/UNKNOWN-UW-536/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- C36T C241T C1059T C3037T C14408T G15760A A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_431102
 2020-03-11 2020-04-29
 India hCoV-19/India/GMC-KN318/2020
 C241T C3037T C14408T A23403G

EPI_ISL_434471
 2020-03-11 2020-04-29
 Greece hCoV-19/Greece/149/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- G1440A G2891A TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_434473
 2020-03-11 2020-04-29
 Greece hCoV-19/Greece/136/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G G24236T GGG28881AAC TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_434474
 2020-03-11 2020-04-29
 Greece hCoV-19/Greece/137/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T A6646G C14408T A23403G GGG28881AAC TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_434479
 2020-03-11 2020-04-29
 Greece hCoV-19/Greece/138/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGG28881AAC TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_434737
 2020-03-11 2020-05-01
 United States hCoV-19/USA/TX-HMH028/2020
 C241T C3037T C14408T G16741T C18877T A23403G G25563T

EPI_ISL_435058
 2020-03-11 2020-05-02
 South Africa hCoV-19/South Africa/R02606/2020
 C241T C3037T T7630G T7640G T7642G T7648A T8329G C11499A G11501C C13620T C14408T A18230T A18238T A18245T C18248T A18250T A18253T A18259T A18269T A18277T A18279T A18282T A18284T G18286T A18288T A18294T GA18297TT C21595T A23403G T23437A T26631A T26651A G28895T T29604A

EPI_ISL_435136
 2020-03-11 2020-05-03
 United Arab Emirates hCoV-19/United Arab Emirates/L5621/2020
 C241T C3037T C13568T C14408T A23403G

EPI_ISL_435144
 2020-03-11 2020-05-03
 Spain hCoV-19/Spain/Madrid_LP28_2522/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T A23403G T27803C GGG28881AAC TGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29840-

EPI_ISL_435631
 2020-03-11 2020-05-05
 United States hCoV-19/USA/CA-SCCPHD-UC152/2020
 C8782T A16467G C17747T A17858G C18060T C23185T T28144C C29200T

EPI_ISL_435636
 2020-03-11 2020-05-05
 United States hCoV-19/USA/CA-SCCPHD-UC157/2020
 T9250C G9973A A13510G G29711T

EPI_ISL_435637
 2020-03-11 2020-05-05
 United States hCoV-19/USA/CA-SCCPHD-UC158/2020
 T18278C C20628T G29711T

EPI_ISL_435674
 2020-03-11 2020-05-05
 Brunei hCoV-19/Brunei/2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- A46G T286Y G2897A C6312A A9930R G11083T C13730T A14620R C18747Y C21005Y A21080W C23929T G25198R C28311T GATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29751-

EPI_ISL_435675
 2020-03-11 2020-05-05
 Brunei hCoV-19/Brunei/3/2020
 A1- G2897A C6312A A9683R G11083T C13730T C23929T C28311T ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_436804 MT439234
 2020-03-11 2020-05-06
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20189/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C14408T A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_437228
 2020-03-11 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0029/2020
 C241T C1059T C3037T C14408T A23403G G25563T C25585T

EPI_ISL_437246
 2020-03-11 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0047/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_437247
 2020-03-11 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0048/2020
 C241T C3037T C14408T A23403G C27046T C28344A GGG28881AAC

EPI_ISL_437248
 2020-03-11 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0049/2020
 C241T C1812T C3037T C14408T A23403G C27046T C28344A GGG28881AAC

EPI_ISL_437611 MT447167
 2020-03-11 2020-05-01
 Thailand SARS-CoV-2/human/THA/SI204487-NT/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- A1515G C9223T G11083T A14597G C14805T T17247C A17799G G26144T A28615G TACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29748-

EPI_ISL_437901 MT459910
 2020-03-11 2020-05-11
 Greece SARS-CoV-2/human/GRC/251_32400/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T G2229A C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_437908 MT459922
 2020-03-11 2020-05-11
 Greece SARS-CoV-2/human/GRC/264_32497/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T A23403G C28826T GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_437941
 2020-03-11 2020-05-12
 Austria hCoV-19/Austria/CeMM0071/2020
 C241T C3037T C14408T T22521K A23403G ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_437942
 2020-03-11 2020-05-12
 Austria hCoV-19/Austria/CeMM0073/2020
 C241T C1059T C3037T C14408T T22521K A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_437976
 2020-03-11 2020-05-12
 Austria hCoV-19/Austria/CeMM0119/2020
 T6163A C12923A C13430T C19366T T22521K A27379R T28110C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_437978
 2020-03-11 2020-05-12
 Austria hCoV-19/Austria/CeMM0121/2020
 C241T C1059T C3037T C14408T C19961T T22521K A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_437979
 2020-03-11 2020-05-12
 Austria hCoV-19/Austria/CeMM0123/2020
 C241T C1059T C3037T C14408T T22521K A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_437980
 2020-03-11 2020-05-12
 Austria hCoV-19/Austria/CeMM0124/2020
 C241T C1059T C3037T C14408T T22521K A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_437981
 2020-03-11 2020-05-12
 Austria hCoV-19/Austria/CeMM0125/2020
 C241T C1059T C3037T G9190T C14408T G15380T A23403G G25563T AAAAAAAAAAA29893-

EPI_ISL_437982
 2020-03-11 2020-05-12
 Austria hCoV-19/Austria/CeMM0126/2020
 C241T C3037T C3373M C6629Y C14408T T22521K A23403G G25563K GGG28881RRS TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_437983
 2020-03-11 2020-05-12
 Austria hCoV-19/Austria/CeMM0127/2020
 C241T C1059Y C3037T C3373M C14408T C14980Y G15380K A23403G G25563K GGG28881RRS AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_437984
 2020-03-11 2020-05-12
 Austria hCoV-19/Austria/CeMM0128/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_438026
 2020-03-11 2020-05-12
 Austria hCoV-19/Austria/CeMM0184/2020
 C241T C1059T C3037T C14408T A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_438028
 2020-03-11 2020-05-12
 Italy hCoV-19/Austria/CeMM0186/2020
 C241T C3037T G3994T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_438230
 2020-03-11 2020-05-12
 United States hCoV-19/USA/DC-HP00072/2020
 A2480G C2558T A4912C G11083T C14805T C17010A C21575T G26144T

EPI_ISL_438234
 2020-03-11 2020-05-12
 United States hCoV-19/USA/MD-HP00076/2020
 T490A C3177T C6040T C8782T C8950T G12478A T18736C C24034T T26729C G28077C T28144C C28896G C29451T A29700G

EPI_ISL_441412
 2020-03-11 2020-05-12
 United Kingdom hCoV-19/Northern Ireland/NIRE-1023F5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC

EPI_ISL_443195
 2020-03-11 2020-05-12
 Singapore hCoV-19/Singapore/103/2020
 T76W T78K C6312A C8139T G11083T C13730T T14696W C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_444817
 2020-03-11 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-1235/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_444818
 2020-03-11 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-1238/2020
 C241T C1059T C3037T C3743T C14408T A23403G G25563T

EPI_ISL_444819
 2020-03-11 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-1239/2020
 C241T C1059T C3037T C14408T G15380T A23403G G25563T

EPI_ISL_444820
 2020-03-11 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-1241/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_444822
 2020-03-11 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-1243/2020
 G1440A G2891A C7011T G29645T

EPI_ISL_444823
 2020-03-11 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-1244/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_444824
 2020-03-11 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-1245/2020
 G1440A G2891A C7011T

EPI_ISL_444825
 2020-03-11 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-1246/2020
 C241T C3037T C13499T C14408T A23403G C24096T G25266T C27046T GGG28881AAC

EPI_ISL_444826
 2020-03-11 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-1248/2020
 C241T C1059T C3037T C14408T G23401T A23403G G25563T

EPI_ISL_444827
 2020-03-11 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-1249/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_444828
 2020-03-11 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-1250/2020
 T514C ATG1605- C21648T C23758T C25517T

EPI_ISL_444829
 2020-03-11 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-1252/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_444831
 2020-03-11 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-1257/2020
 C241T C1059T C3037T C14408T G17808C A23403G G25563T

EPI_ISL_444832
 2020-03-11 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-1260/2020
 C241T C3037T C14408T A23403G G25563T

EPI_ISL_444890
 2020-03-11 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-756/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_444891
 2020-03-11 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-757/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_444994
 2020-03-11 2020-05-14
 United States hCoV-19/USA/CA_NHRC_01/2020
 ATTAAAGGTTTAT1- C8782T C17747T A17858G C18060T A24694T T28144C

EPI_ISL_445221
 2020-03-11 2020-05-15
 Sweden hCoV-19/Sweden/20-05444/2020
 C241T C3037T C14195A C14408T A23403G

EPI_ISL_445254
 2020-03-11 2020-05-15
 Chile hCoV-19/Chile/Santiago_11/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C14408T A23403G C29144T TCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29834C

EPI_ISL_445258
 2020-03-11 2020-05-15
 Chile hCoV-19/Chile/Santiago_15/2020
 T2C A4T C8782T T9477A C14805T G25979T T28144C C28657T A28692R C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_445260
 2020-03-11 2020-05-15
 Chile hCoV-19/Chile/Santiago_17/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C8782T T9477A A12506R C14805T C21812T G25979T C26735T T28144C C28657T C28863T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_445261
 2020-03-11 2020-05-15
 Chile hCoV-19/Chile/Santiago_18/2020
 ATTAAAGGTTTATACCT1- C241T C3037T C6317A C14408T A20268G A23403G ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_445262
 2020-03-11 2020-05-15
 Chile hCoV-19/Chile/Santiago_19/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T G1085T C3037T C14408T A23403G CTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29831-

EPI_ISL_445263
 2020-03-11 2020-05-15
 Chile hCoV-19/Chile/Santiago_20/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T A7636R G9136R C14408T A20268G A23403G TCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29834CT

EPI_ISL_445265
 2020-03-11 2020-05-15
 Chile hCoV-19/Chile/Santiago_22/2020
 -2ACACAGTTTATGATCCTTTGCAACCTGAA -5GACTCATTCAAGGAGGAGTT C241T C3037T C14408T A20268G A23403G CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_445332
 2020-03-11 2020-05-15
 Chile hCoV-19/Chile/Chillan_3/2020
 ATTAAAGGTTTATACC1- C241T C3037T T7034A C14408T A20268G C21846T A23403G CA29838TG GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_447253
 2020-03-11 2020-05-17
 Taiwan hCoV-19/Taiwan/TSGH-27/2020
 T7876C AA29902GTCCGAAAAAAAAAACAAAAGATAAAATTTAGTAAAGAGGAGATAGAAAAAAAAAACACGAC

EPI_ISL_447635 MT459864
 2020-03-11 2020-05-11
 Greece SARS-CoV-2/human/GRC/149_32357/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- G1440A G2891A ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_447649 MT459912
 2020-03-11 2020-05-11
 Greece SARS-CoV-2/human/GRC/254_32422/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_447650 MT459913
 2020-03-11 2020-05-11
 Greece SARS-CoV-2/human/GRC/255_32525/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_447652 MT459920
 2020-03-11 2020-05-11
 Greece SARS-CoV-2/human/GRC/262_32443/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_447653 MT459921
 2020-03-11 2020-05-11
 Greece SARS-CoV-2/human/GRC/263_32477/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_450088
 2020-03-11 2020-05-20
 United States hCoV-19/USA/NY-PV09408/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T C1059T C3037T C14178T C14408T A23403G G25563T TCTTGTAGGCTTGATGTGGCTCAGCTACTTCATTGCT26780- AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450089
 2020-03-11 2020-05-20
 United States hCoV-19/USA/NY-PV09409/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450091
 2020-03-11 2020-05-20
 United States hCoV-19/USA/NY-PV09411/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C6720T C8782T C17747T A17858G C18060T T28144C AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450092
 2020-03-11 2020-05-20
 United States hCoV-19/USA/NY-PV09412/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C9491T C14408T A23403G G25563T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_450108
 2020-03-11 2020-05-20
 United States hCoV-19/USA/NY-PV09431/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T C3037T C14408T G14580T A23403G AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450110
 2020-03-11 2020-05-20
 United States hCoV-19/USA/NY-PV09433/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C8782T C17747T A17858G C18060T T28144C AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450351
 2020-03-11 2020-05-20
 Norway hCoV-19/Norway/Trondheim-E9/2020
 ATTAAAGGTTTATACCTTCC1- C241T C313T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAA29889-

EPI_ISL_450352
 2020-03-11 2020-05-20
 Norway hCoV-19/Norway/Trondheim-E10/2020
 ATTAAAGGTTTATACCTTCC1- C241T C3037T A4761M C14408T A23403G A26530G C28603T AAAAAAAAAAAAAAA29889-

EPI_ISL_450515
 2020-03-11 2020-05-21
 Lebanon hCoV-19/Lebanon/S9_764/2020
 CT40AC C884T G1397A G8653T G11083T G22021T C25611T T28688C G29742T

EPI_ISL_450601 MT509669
 2020-03-11 2020-05-21
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20322/2020
 C241T C1059T C3037T C14408T A23403G G25563T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_450792 MT507793
 2020-03-11 2020-05-22
 Jamaica SARS-CoV-2/homo sapien/JAM/JM-CDC-0078/2020
 G6589T -11075TTT G11083T C14805T T17247C G26144T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_450794 MT507272
 2020-03-11 2020-05-22
 Jamaica SARS-CoV-2/human/JAM/JM-CDC-4376/2020
 C6312A G11083T C11416Y C13730Y C19524T C23929T C28311T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_452001
 2020-03-11 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-119/2020
 C241T C3037T C14408T A23403G

EPI_ISL_452002
 2020-03-11 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-121/2020
 C241T C1392T C3037T C14408T A20268G A23403G C24026T C27012T

EPI_ISL_452003
 2020-03-11 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-122/2020
 C241T C1059T C1302T C3037T C14408T A23403G G25563T

EPI_ISL_452004
 2020-03-11 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-123/2020
 C241T T658C C3037T C14408T C21622T A23403G A24862G C28629T C29253T

EPI_ISL_452005
 2020-03-11 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-124/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_452007
 2020-03-11 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-126/2020
 C241T C1059T C3037T C14408T G15380T A23403G G25563T

EPI_ISL_452008
 2020-03-11 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-127/2020
 C241T C1059T C3037T A12151G C14408T A23403G G25563T

EPI_ISL_452009
 2020-03-11 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-128/2020
 

EPI_ISL_452010
 2020-03-11 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-129/2020
 C241T C3037T C14408T A20268G A23403G G29734C

EPI_ISL_452012
 2020-03-11 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-131/2020
 C241T C1059T C1302T C3037T T10573C C11344T C14408T A23403G G25563T G26842A

EPI_ISL_452013
 2020-03-11 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-134/2020
 C218T C241T C1059T C1302T C3037T C14408T A23403G G25563T

EPI_ISL_452014
 2020-03-11 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-135/2020
 C241T C1059T C1302T C3037T C14408T A20541G A23403G G25563T

EPI_ISL_452015
 2020-03-11 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-136/2020
 C241T C1059T C3037T C14408T G15380T A23403G G25563T

EPI_ISL_452016
 2020-03-11 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-137/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_452017
 2020-03-11 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-138/2020
 C241T C1059T C3037T C14408T G15380T G19480A A23403G G25563T

EPI_ISL_452018
 2020-03-11 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-139/2020
 C241T C1059T C3037T C14408T C20762T A23403G G25563T

EPI_ISL_452019
 2020-03-11 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-140/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_452020
 2020-03-11 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-141/2020
 C241T C1059T C1302T C3037T C14408T A23403G G25563T

EPI_ISL_452021
 2020-03-11 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-142/2020
 C241T C1059T C1302T C3037T C14408T A23403G G25563T

EPI_ISL_452022
 2020-03-11 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-143/2020
 C241T C1059T C1302T C3037T C14408T A23403G G25563T

EPI_ISL_452023
 2020-03-11 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-144/2020
 G1440A G2891A C7011T G25593C

EPI_ISL_452024
 2020-03-11 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-145/2020
 C1059T C3037T C14408T A23403G G25563T

EPI_ISL_452115 MT512443
 2020-03-11 2020-05-26
 United States SARS-CoV-2/human/USA/TX-CDC-8001/2020
 T490A C3177T C8782T T18736Y C24034T C26204T T26729C G26775T G28077C T28144C A29700G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_452701
 2020-03-11 2020-05-27
 Spain hCoV-19/Spain/COV000847/2020
 C8782T T9477A C14805T C16375Y C16949Y G25979T T28144C C28657T C28863T C29870A

EPI_ISL_452703
 2020-03-11 2020-05-27
 Spain hCoV-19/Spain/COV000843/2020
 A5212G C8782T T9477A C14805T G25599T G25979T T28144C C28657T C28863T

EPI_ISL_454007
 2020-03-11 2020-05-28
 Portugal hCoV-19/Portugal/PT0291/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- C241T C3037T C14408T A23403G GGG28881AAC CGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29754-

EPI_ISL_454222
 2020-03-11 2020-05-28
 Portugal hCoV-19/Portugal/PT0498/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- A2480G C2558T G11083T C14805T G26144T A29684G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454758
 2020-03-11 2020-05-29
 Netherlands hCoV-19/Netherlands/Utrecht_10009/2020
 ATTAAAGGTTTAT1- C241T C3037T G11761T C14408T A23403G C27046T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_454786
 2020-03-11 2020-05-29
 Netherlands hCoV-19/Netherlands/Utrecht_10037/2020
 ATTAAAGGTTTATACCTTC1- C241T C3037T C14408T C20647T G22661T A23403G A24862G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_454902
 2020-03-11 2020-05-29
 Sweden hCoV-19/Sweden/20-50294/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T

EPI_ISL_455333
 2020-03-11 2020-05-29
 Spain hCoV-19/Spain/Galicia202230/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T C3037T C14408T A20268G A23403G T29832A T29834C CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

EPI_ISL_455334
 2020-03-11 2020-05-29
 Spain hCoV-19/Spain/Galicia202282/2020
 A1- C241T C3037T C7604T C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_455335
 2020-03-11 2020-05-29
 Spain hCoV-19/Spain/Galicia202297/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T C3037T C14408T A20268G A21395T A23403G TGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29829-

EPI_ISL_455344
 2020-03-11 2020-05-29
 Spain hCoV-19/Spain/Melilla202020/2020
 ATTAAAGGTTTATACC1- C241T C3037T C5884T A8449G G8470T C14408T A20268G A23403G GAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29703-

EPI_ISL_455345
 2020-03-11 2020-05-29
 Spain hCoV-19/Spain/Melilla202134/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T A8537T C14408T G21225T T21272C A23403G G25563T G28620T TAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29823-

EPI_ISL_455346
 2020-03-11 2020-05-29
 Spain hCoV-19/Spain/Melilla202135/2020
 ATTAAAGGTTTATACC1- C241T C3037T C14408T C17639T A20268G A21356G A23403G C28638T TTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29820-

EPI_ISL_455439
 2020-03-11 2020-05-29
 Mexico hCoV-19/Mexico/CDMX-InDRE_15/2020
 ATTA1- C8782T C17747T A17858G C18060T C21707T C23422T A24694T T28144C TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_455842
 2020-03-11 2020-06-01
 Sweden hCoV-19/Sweden/20-08156/2020
 C241T C1059T C3037T C12885T C14408T A23403G G25563T

EPI_ISL_455903
 2020-03-11 2020-06-01
 Sweden hCoV-19/Sweden/20-50279/2020
 T239A G1440A G2891A C7011T G25593C

EPI_ISL_455910
 2020-03-11 2020-06-01
 Thailand hCoV-19/Thailand/Bangkok-CONI-0107/2020
 A1- C6312A G11083T C13730T C19524T C23929T C28311T

EPI_ISL_456163
 2020-03-11 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR0712/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_457799 MT646071
 2020-03-11 2020-06-02
 United States SARS-CoV-2/human/USA/MD-HP00057/2020
 C241T C1059T C3037T C10851T C14408T A23403G G25563T

EPI_ISL_457808 MT646078
 2020-03-11 2020-06-02
 United States SARS-CoV-2/human/USA/MD-HP00067/2020
 C241T C629T C1059T C3037T C14408T C21772T A23403G C23453T G25563T

EPI_ISL_460440 MT520515
 2020-03-11 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00006/2020
 ATTAAAGGTTTATAC1- C241T C1059T C3037T C14408T A23403G G25563T ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_460467 MT520542
 2020-03-11 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00004/2020
 ATTA1- T490A C3177T C8782T T18736C G19684T C24034T T26729C C27635T G28077C T28144C A29700G AAAAAAAAAAAAAAAAAAAAAA29882-

EPI_ISL_460472 MT520547
 2020-03-11 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00005/2020
 ATTAAAGGTTTATACC1- C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_461147
 2020-03-11 2020-06-06
 Netherlands hCoV-19/Netherlands/NoordBrabant_111/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- T6353C C17410T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_462210
 2020-03-11 2020-06-08
 Belgium hCoV-19/Belgium/BWM-0311356/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C23575T G23587C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_463008
 2020-03-11 2020-06-09
 Germany hCoV-19/Germany/Muenster_FI1103201/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T A23403G GGG28881AAC G29540T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_463741
 2020-03-11 2020-06-10
 Cyprus hCoV-19/Cyprus/001/2020
 C241T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_464721
 2020-03-11 2020-06-11
 United Kingdom hCoV-19/England/201140309/2020
 G11083T C14805T T17247C A19828R G26144T

EPI_ISL_464734
 2020-03-11 2020-06-11
 United Kingdom hCoV-19/England/201140432/2020
 GT5743SY G11083T G26144T

EPI_ISL_464770
 2020-03-11 2020-06-11
 United Kingdom hCoV-19/England/201160002/2020
 C241T C3037T C11563Y C13329Y A13341M C14408T A20728M G22051R A22116W G22147R C22251Y A23403G G29097K

EPI_ISL_464776
 2020-03-11 2020-06-11
 United Kingdom hCoV-19/England/201160010/2020
 T11G C241T C3037T C14408T T17835C A23403G

EPI_ISL_464777
 2020-03-11 2020-06-11
 United Kingdom hCoV-19/England/201160011/2020
 C241T C3037T C14408T T17835C A23403G

EPI_ISL_464778
 2020-03-11 2020-06-11
 United Kingdom hCoV-19/England/201160012/2020
 C241T C3037T C14408T T17835C A23403G

EPI_ISL_464785
 2020-03-11 2020-06-11
 United Kingdom hCoV-19/England/201160068/2020
 C241T C3037T GT5743SY C14408T A23403G C25096T GGG28881AAC

EPI_ISL_464790
 2020-03-11 2020-06-11
 United Kingdom hCoV-19/England/201160243/2020
 T1368C C6990T G11083T C14805T A22500W C23707T G26144T

EPI_ISL_464791
 2020-03-11 2020-06-11
 United Kingdom hCoV-19/England/201160258/2020
 A2480G C2558T G11083T C14805T G26144T

EPI_ISL_464795
 2020-03-11 2020-06-11
 United Kingdom hCoV-19/England/201160276/2020
 C241T C3037T C14408T C15324T A23403G

EPI_ISL_464803
 2020-03-11 2020-06-11
 United Kingdom hCoV-19/England/201160756/2020
 C241T C3037T C14408T G21508R A23403G

EPI_ISL_464824
 2020-03-11 2020-06-11
 United Kingdom hCoV-19/England/201161219/2020
 C241T G942R C3037T C14408T A23403G GGG28881AAC

EPI_ISL_464843
 2020-03-11 2020-06-11
 United Kingdom hCoV-19/England/201161462/2020
 C241T C3037T G3901T C14408T A20268G A23403G

EPI_ISL_464849
 2020-03-11 2020-06-11
 United Kingdom hCoV-19/England/201161484/2020
 C241T C2416T C2509Y C3037T A9848R C14408T C14786T A16597G G19292K G20578T A23403G G25563T

EPI_ISL_464863
 2020-03-11 2020-06-11
 United Kingdom hCoV-19/England/201161611/2020
 ATG1605- C20270T A29683T

EPI_ISL_464900
 2020-03-11 2020-06-11
 United Kingdom hCoV-19/England/201180343/2020
 C241Y C3037Y GT5743SY C14408Y A23403R GGG28881RRS

EPI_ISL_464948
 2020-03-11 2020-06-11
 United Kingdom hCoV-19/England/20118104004/2020
 ATG1605- G17266A

EPI_ISL_464949
 2020-03-11 2020-06-11
 United Kingdom hCoV-19/England/20118104104/2020
 ATG1605- G17266A

EPI_ISL_465084
 2020-03-11 2020-06-11
 United Kingdom hCoV-19/England/20119060904/2020
 A187G C241T C1997T C3037T C8290T C14408T A23403G A24110T G24821T

EPI_ISL_466959 LR824069
 2020-03-11 2020-06-12
 Switzerland 100035
 C241T C3037T C14408T T22497Y T22516W A23403G C27046T GGG28881AAC

EPI_ISL_466960 LR824079
 2020-03-11 2020-06-12
 Switzerland 100036
 C241T C3037T C6762T C14408T C15324T A19298W TT22515YW A23403G

EPI_ISL_466961 LR824074
 2020-03-11 2020-06-12
 Switzerland 100037
 C241T C3037T G4255T C10582T C14408T T19329Y C19343S T19401W G22104K C22347S T22516W A23403G G25947A A26530R C29249T

EPI_ISL_466970 LR824071
 2020-03-11 2020-06-12
 Switzerland 100048
 C241T C3037T C14408T T19335Y T19500Y A19548R T22463W A23403G

EPI_ISL_467925 MT614520
 2020-03-11 2020-06-15
 United States SARS-CoV-2/human/USA/UT-QDX-82/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1545T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467959
 2020-03-11 2020-06-16
 United States hCoV-19/USA/CA-SR0429/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_468731
 2020-03-11 2020-06-17
 Belgium hCoV-19/Belgium/UGent-82/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_468732
 2020-03-11 2020-06-17
 Belgium hCoV-19/Belgium/UGent-83/2020
 C241T C3037T C4809T C14408T A23403G

EPI_ISL_468734
 2020-03-11 2020-06-17
 Belgium hCoV-19/Belgium/UGent-86/2020
 C241T C1059T C3037T C14408T G15380T A23403G G25563T

EPI_ISL_468735
 2020-03-11 2020-06-17
 Belgium hCoV-19/Belgium/UGent-87/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_468736
 2020-03-11 2020-06-17
 Belgium hCoV-19/Belgium/UGent-88/2020
 C241T C3037T C14408T A23403G A26530G

EPI_ISL_469282
 2020-03-11 2020-06-18
 France hCoV-19/France/211_80/2020
 ATTAAAGGTTTATAC1- C241T C1059T C3037T T13006C C14408T C23277T A23403G G25563T C25688T

EPI_ISL_471547
 2020-03-11 2020-06-22
 Czech Republic hCoV-19/Czech Republic/NRL_2554/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3955T C14408T A23403G G25534T C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475838
 2020-03-11 2020-06-25
 Austria hCoV-19/Austria/CeMM0403/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475910
 2020-03-11 2020-06-25
 Austria hCoV-19/Austria/CeMM0559/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G15380K T16993Y A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475919
 2020-03-11 2020-06-25
 Austria hCoV-19/Austria/CeMM0570/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G443A T1570C G11083T G14656T C14805T T17247C T21739C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475920
 2020-03-11 2020-06-25
 Austria hCoV-19/Austria/CeMM0571/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G20709T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476067
 2020-03-11 2020-06-25
 Czech Republic hCoV-19/Czech Republic/NRL_4033/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C28512A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476785
 2020-03-11 2020-06-25
 United States hCoV-19/USA/CA-CZB-1768/2020
 ATTAAAGGTTT1- G11083T C14805T T15922C T17247C G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_479662 MT678839
 2020-03-11 2020-06-30
 South Korea SARS-CoV-2/human/KOR/CNUHV03/2020
 T120C A963G C2536T A3553G G3815A T4120C T4402C A5019G G5062T A6030G A6391G A6505G T7198C T7380C T7576C G7684A T8296C T8439C T8523C C8782T G8876A T9179C A9218G G11083T TGAT11275AATC T13147C A13315G T14086C A14681G T15728C T17772C A17809G T18613C C21377G T21432C T21439C A21675G T21819C C21846T A21849G A22013G T22117G T24073C T24565C T27534C G27593A T27956C T28144C T28516C A29355T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_479853
 2020-03-11 2020-07-01
 Japan hCoV-19/Japan/PG-0121/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C3037T C8626T C14408T C18877T A23403G G25563T C26735T TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_479854
 2020-03-11 2020-07-01
 Japan hCoV-19/Japan/PG-0122/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C14408T C18877T A23403G G25563T C26735T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_479872
 2020-03-11 2020-07-01
 Japan hCoV-19/Japan/PG-0162/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C11752T C19170A G28857T TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_479905
 2020-03-11 2020-07-01
 Japan hCoV-19/Japan/PG-0204/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCT1- C8782T G16381A T17877C T28144C G28878A G29742A GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_479906
 2020-03-11 2020-07-01
 Japan hCoV-19/Japan/PG-0205/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C8782T G16381A T17877C T28144C G28878A G29742A ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_479907
 2020-03-11 2020-07-01
 Japan hCoV-19/Japan/PG-0207/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C8782T G16381A T17877C T28144C G28878A G29742A TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_479922
 2020-03-11 2020-07-01
 Japan hCoV-19/Japan/PG-0223/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C140T A2160G T4402C G5062T C8782T G11083T T28144C ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_479931
 2020-03-11 2020-07-01
 Japan hCoV-19/Japan/PG-0237/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C4784T C8782T C9979T G16381A T17877C T28144C G28878A G29742A GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_481283
 2020-03-11 2020-07-02
 United States hCoV-19/USA/NY-NYU-VC-003/2020
 ATTAA1- C241T C1059T C3037T C14408T A23403G G25563T TGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29785-

EPI_ISL_482483
 2020-03-11 2020-07-03
 Canada hCoV-19/Canada/MB_79/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6312A G11083T C13730T C23929T C28311T ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_482990
 2020-03-11 2020-07-06
 United States hCoV-19/USA/MN-MDH-1269/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25563T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_482995
 2020-03-11 2020-07-06
 United States hCoV-19/USA/MN-MDH-1274/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C11776T C14408T A23403G GGG28881AAC T29855- GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_483542
 2020-03-11 2020-07-07
 Bahrain hCoV-19/Bahrein/BAH-01/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1397A G4144T G11083T C11109T C19862T T27384C T28688C G29742T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_483543
 2020-03-11 2020-07-07
 Bahrain hCoV-19/Bahrein/BAH-02/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1397A G11083T T28688C G29543T G29742T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_485831 MT739437 MT913050
 2020-03-11 2020-07-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0529/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C2416T C3037T C10712T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_485833 MT739439 MT913052
 2020-03-11 2020-07-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0531/2020
 ATTA1- C241T C2416T C3037T C10626T C10712T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_485834 MT739440 MT913053
 2020-03-11 2020-07-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0533/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C2416T C3037T G4523A C10712T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_485845 MT739451 MT913064
 2020-03-11 2020-07-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0544/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- T490A C3177T C8782T T18736C G19684T C24034T T26729C C27635T G28077C T28144C A29700G

EPI_ISL_487275 MT747438
 2020-03-11 2020-07-13
 Belgium SARS-CoV-2/Felis catus/BEL/BE-MG-0320/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488190
 2020-03-11 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F76F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21660T A23403G C23575T G23587C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488199
 2020-03-11 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F79C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G199T C241T A1461G C2334T C3037T C5730T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488201
 2020-03-11 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F811/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488287
 2020-03-11 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F723/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3189T C14408T A23403G GGG28881AAC G29540T G29736A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488356
 2020-03-11 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F802/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488434
 2020-03-11 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F77E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21660T A23403G C23575T G23587C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489838
 2020-03-11 2020-07-14
 Peru hCoV-19/Peru/Peru006/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAA1- C241T C3037T C14408T T15282C A23403G GGG28881AAC ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_489988
 2020-03-11 2020-07-14
 Peru hCoV-19/Peru/INS-011/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAA1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_490209
 2020-03-11 2020-07-15
 Peru hCoV-19/Peru/INS-015/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAA1- C241T A1087G G1598A C3037T T5124G C12970T C14408T A20268G G21220T A23403G ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_491440
 2020-03-11 2020-07-17
 Costa Rica hCoV-19/Costa Rica/INC-0028/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C3037T C14408T C21638T A23403G G26143A TATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29832-

EPI_ISL_491446
 2020-03-11 2020-07-17
 Costa Rica hCoV-19/Costa Rica/INC-0034/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATC1- C241T C3037T C14408T C17104T C21638T A23403G G26143A ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_492665
 2020-03-11 2020-07-20
 United Kingdom hCoV-19/England/BRIS-130983/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C8655T G29000T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492735
 2020-03-11 2020-07-20
 United Kingdom hCoV-19/England/BRIS-130B9C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G659S C3037T C3373A C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492984
 2020-03-11 2020-07-20
 Italy hCoV-19/Italy/NegrarVR_5/2020
 A1- A187G C241T C3037T C14408T C14889T A23403G T29867A C29870A

EPI_ISL_498010
 2020-03-11 2020-07-26
 South Korea hCoV-19/Korea/KCDC2109/2020
 ATTAAAGGTT1- G5572T G11083T C14805T G26144T G27441T

EPI_ISL_498013
 2020-03-11 2020-07-26
 South Korea hCoV-19/Korea/KCDC2112/2020
 ATTAAAGG1- A2196C G5572T G11083T C14805T G26144T G27441T

EPI_ISL_498168
 2020-03-11 2020-07-27
 Colombia hCoV-19/Colombia/T1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G578A C17747T A17858G C18060T A24694T T28144C A29365G A29547G G29736T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498169
 2020-03-11 2020-07-27
 Colombia hCoV-19/Colombia/T8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G578A C18060T A24694T T28144C A29365G A29547G G29736T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498170
 2020-03-11 2020-07-27
 Colombia hCoV-19/Colombia/T12/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G578A C8782T C17747T A17858G C18060T A24694T G25785T T28144C A29365G A29547G G29736T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_500038
 2020-03-11 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A4745/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T G10097A C14408T A23403G C23731T GGG28881AAC C29870A

EPI_ISL_500044
 2020-03-11 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A47EB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G C25513Y GGG28881AAC

EPI_ISL_500058
 2020-03-11 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A498B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G C25350T A28254G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_500410
 2020-03-11 2020-07-28
 Spain hCoV-19/Spain/COV005976/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGA1- C241T C1059T C3037T T13006C C14408T G17302T A23403G G25563T C25688T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_500411
 2020-03-11 2020-07-28
 Spain hCoV-19/Spain/COV005977/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T T13006C C14408T G17302T A23403G G25563T C25688T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_500413
 2020-03-11 2020-07-28
 Spain hCoV-19/Spain/COV005979/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T G6337T T13006C C14408T G17302T A23403G G25563T C25688T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_500449
 2020-03-11 2020-07-28
 Spain hCoV-19/Spain/COV006019/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A20268G A23403G T28600C GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_500634
 2020-03-11 2020-07-29
 Australia hCoV-19/Australia/NSW2156/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G C9223T G11083T C14805T T17247C A17799G G26144T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500635
 2020-03-11 2020-07-29
 Australia hCoV-19/Australia/NSW2157/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C9165T C17747T A17858G C18060T A24694T T28144C CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_508766 MT834608
 2020-03-11 2020-08-04
 United States SARS-CoV-2/human/USA/FL-BPHL-0562/2020
 ATT1- C241T C3037T C14408T A23403G GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_508767 MT834609
 2020-03-11 2020-08-04
 United States SARS-CoV-2/human/USA/FL-BPHL-0563/2020
 A1- C241T C3037T C14408T A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_508872
 2020-03-11 2020-08-04
 France hCoV-19/France/ARA07639/2020
 ATTAAA1- C241T C337T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_508910
 2020-03-11 2020-08-04
 France hCoV-19/France/NA01745/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGT1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_508943
 2020-03-11 2020-08-04
 France hCoV-19/France/ARA07722/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGT1- C241T C1059T C3037T C14408T A23403G G25563T G28423A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_508944
 2020-03-11 2020-08-04
 France hCoV-19/France/ARA07731/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- T514C ATG1605- C17410T C28610G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_508945
 2020-03-11 2020-08-04
 France hCoV-19/France/ARA0779/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_511892
 2020-03-11 2020-08-10
 Vietnam hCoV-19/Vietnam/VNHN_0554/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC A29881G A29883T A29885T

EPI_ISL_515294
 2020-03-11 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0005/2020
 ATTAAA1- C8782T C17747T A17858G C18060T A25385G T28144C

EPI_ISL_515974
 2020-03-11 2020-08-20
 Denmark hCoV-19/Denmark/ALAB-1000/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516831
 2020-03-11 2020-08-24
 United Kingdom hCoV-19/England/LOND-125FCEB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516836
 2020-03-11 2020-08-24
 United Kingdom hCoV-19/England/LOND-125FC63/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9711T C14408T A23403G A26530G G28739T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_523810
 2020-03-11 2020-08-26
 Peru hCoV-19/Peru/LAL-INS-070/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAA1- C8782T C26088T T28144C ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_523934
 2020-03-11 2020-08-27
 Germany hCoV-19/Germany/NW-63/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A C6317T C9891Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_523968
 2020-03-11 2020-08-27
 Moldova hCoV-19/Moldova/ChVir7776/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGA1- C241T C3037T C14408T A23403G CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_525597
 2020-03-11 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-12824-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_525599
 2020-03-11 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-13245-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- A1515G C9223T G11083T C14805T T17247C A17799G C23987T G26144T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_525600
 2020-03-11 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-13260-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_525601
 2020-03-11 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-13391-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T A8882G C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_528001
 2020-03-11 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42186303/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T G16245A C21057T A23403G ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_528002
 2020-03-11 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42186366/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C10755T C14408T C15324T A23403G TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_528003
 2020-03-11 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42186379/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528004
 2020-03-11 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42186390/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G ATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29850-

EPI_ISL_528005
 2020-03-11 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42186394/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528006
 2020-03-11 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42186401/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528007
 2020-03-11 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42186413/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528008
 2020-03-11 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42186439/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528009
 2020-03-11 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42186504/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T G3251T C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528010
 2020-03-11 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42186509/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G3251T C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528011
 2020-03-11 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42186528/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528012
 2020-03-11 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42186550/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T C15810T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528013
 2020-03-11 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42186574/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528015
 2020-03-11 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42186686/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528017
 2020-03-11 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42186718/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_528023
 2020-03-11 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42187456/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C313T C3037T C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_534933
 2020-03-11 2020-09-14
 United Kingdom hCoV-19/England/OXON-B4153/2020
 C241T C3037T C14408T C22009T A23403G C27046T C27595T GGG28881AAC

EPI_ISL_534981
 2020-03-11 2020-09-14
 United Kingdom hCoV-19/England/OXON-B48C7/2020
 G11083T C14805T G26031T G26144T G28842T AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_535728
 2020-03-11 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00214517/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535729
 2020-03-11 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00214546/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C799T C1427T C8782T C17747T A17858G C18060T A24694T G25543A T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535823
 2020-03-11 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00224795/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T C3096T C9170T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536436
 2020-03-11 2020-09-16
 Singapore hCoV-19/Singapore/895/2020
 A1- C4320T A29746R AAAAAAAAAAAA29892-

EPI_ISL_536553
 2020-03-11 2020-09-16
 Peru hCoV-19/Peru/LIM-INS-160/2020
 ATTA1- C241T A1087G G1598A C3037T T5124G C12970T C14408T A20268G G21220T A23403G G29734C

EPI_ISL_537414
 2020-03-11 2020-09-16
 Spain hCoV-19/Spain/RI-CSIC-99005871/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C1059T C3037T T13006C C14408T G17302T A23403G G25563T C25688T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_538266 MW010247
 2020-03-11 2020-09-16
 United States SARS-CoV-2/human/USA/MD-MDH-0182/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T GTTATG515- C3037T C14408T C18877T A23403G G25563T G29864A T29867- C29870G

EPI_ISL_539566
 2020-03-11 2020-09-18
 Spain hCoV-19/Spain/GA-ISCIII-202077/2020
 A1- A6T C2143T GGCTATTGATGGTGGTGTCACTCGTGACATAGCATCTACAGATAC8695- CCAGCGTGGTGGTAGTTATACTAATGACAAAGCTTGCCCATTGATTGCTGCAGTCATAACAAGAGAAGTGGGTTTTGTCGTGCCTGGTTTGCCTGGCACGATATTACGCACAACTAATGGTGACTTTTTGCATTTCTTACCTAGAGTTTTTAGTGCAGTTGGTAACATCTGT8782- T9477A C14805T G25785T G25979T T28144C C28657T C28863T A29716G A29767G TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_541138
 2020-03-11 2020-09-22
 Czech Republic hCoV-19/Czech Republic/NRL-1753/20
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A610G ATG1605- G18985T C19366T TATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29791-

EPI_ISL_547480
 2020-03-11 2020-09-24
 Netherlands hCoV-19/Netherlands/NB-RIVM-10048/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A24862G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547481
 2020-03-11 2020-09-24
 Netherlands hCoV-19/Netherlands/NB-RIVM-10049/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A24862G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_548245
 2020-03-11 2020-09-25
 Sweden hCoV-19/Sweden/20-08157/2020
 A610G ATG1605- G18985T C19366T G27915C

EPI_ISL_548982
 2020-03-11 2020-09-28
 Singapore hCoV-19/Singapore/974/2020
 ATTA1- A1515G C9223T G11083T C14805T T17247C A21625G G26144T AAAAAAAAAAAA29892-

EPI_ISL_548987
 2020-03-11 2020-09-28
 Singapore hCoV-19/Singapore/979/2020
 ATTAAAGGTTT1- C241T C2416T C3037T C14408T A23403G G25563T G26233T A29700G AAAAAAAAAAAA29892-

MT192765
 2020-03-11 2020-03-16
 United States SARS-CoV-2/human/USA/PC00101P/2020
 ATTAAAG1- C241T C3037T C14408T C18814T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT256924
 2020-03-11 2020-03-27
 Colombia SARS-CoV-2/human/COL/79256_Antioquia/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17470T C26088T T28144C G28985T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT415321
 2020-03-11 2020-04-30
 India SARS-CoV-2/human/IND/GMCKN318/2020
 C241T C3037T C14408T A23403G

MT444148
 2020-03-11 2020-05-07
 United States SARS-CoV-2/human/USA/CA-NHRC-01/2020
 ATTAAAGGTTTAT1- C8782T C17747T A17858G C18060T A24694T T28144C

MT459852
 2020-03-11 2020-05-11
 Greece SARS-CoV-2/human/GRC/136_32338/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G G24236T GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

MT459853
 2020-03-11 2020-05-11
 Greece SARS-CoV-2/human/GRC/137_32340/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T A6646G C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

MT459854
 2020-03-11 2020-05-11
 Greece SARS-CoV-2/human/GRC/138_32343/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

MT509472
 2020-03-11 2020-05-22
 United States SARS-CoV-2/human/USA/DC-HP00072/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T A4912C G11083T C14805T C17010A C21575T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT509475
 2020-03-11 2020-05-22
 United States SARS-CoV-2/human/USA/MD-HP00076/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C6040T C8782T C8950T G12478A T18736C C24034T T26729C G28077C T28144C C28896G C29451T A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT671822
 2020-03-11 2020-06-26
 United States SARS-CoV-2/human/USA/CA-CZB-1768/2020
 ATTAAAGGTTT1- G11083T C14805T T15922C T17247C G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT703677
 2020-03-11 2020-07-02
 United States SARS-CoV-2/human/USA/NYU-VC-003/2020
 ATTAA1- C241T C1059T C3037T C14408T A23403G G25563T TGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29785-

MT810561
 2020-03-11 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0429-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT956914
 2020-03-11 2020-09-03
 Spain SARS-CoV-2/human/ESP/HUD-72114039/2020
 C241T G425A GTTATG515- G787T C3037T C14408T A20268G A23403G C29250T

MW014808
 2020-03-11 2020-09-17
 United States SARS-CoV-2/human/USA/COVID20-1196/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T C18877T A23403G G25563T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

MW030220
 2020-03-11 2020-09-22
 Peru SARS-CoV-2/human/PER/covper084/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGT1- C241T A1087G G1598A C3037T T5124G C12970T C14408T A20268G G21220T A23403G C29675- ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

NMDC60013240
 2020-03-11 2020-06-01
 China hCoV-19/Guangzhou/ID132/2020
 T3A C241T C3037T T12436A C14408T C15324T A23403G ATT29163- T29470A G29868A

EPI_ISL_415475 LR878077
 2020-03-12 2020-03-17
 Netherlands hCoV-19/Netherlands/NA_19/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T C6255T C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415485 LR878095
 2020-03-12 2020-03-17
 Netherlands hCoV-19/Netherlands/NA_28/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C1457T C1594T C3037T C11109T C14408T A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415524 LR878096
 2020-03-12 2020-03-17
 Netherlands hCoV-19/Netherlands/NoordBrabant_68/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- T514C ATG1605- C17410T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415525 LR878090
 2020-03-12 2020-03-17
 Netherlands hCoV-19/Netherlands/NoordHolland_3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C1059T C3037T A6825C C13358T C14408T A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415527 LR878079
 2020-03-12 2020-03-17
 Netherlands hCoV-19/Netherlands/Utrecht_18/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- G11083T A12820G C13119T C14805T T17247C G26144T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415535 LR878111
 2020-03-12 2020-03-17
 Netherlands hCoV-19/Netherlands/ZuidHolland_31/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T T658C C3037T C14408T A23403G A24862G C28629T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415655
 2020-03-12 2020-03-19
 United Kingdom hCoV-19/Wales/PHW27/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16393T G22583A A23403G G27366T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_415657
 2020-03-12 2020-03-19
 United Kingdom hCoV-19/Wales/PHW37/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A G28851T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_415920
 2020-03-12 2020-03-19
 United Kingdom hCoV-19/Wales/PHW32/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A C25669T G28851T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_416635 MT252761
 2020-03-12 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW97/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCT1- C8782T C17747T A17858G C18060T T27384C T28144C G29862A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_416636 MT252762
 2020-03-12 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW98/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C8782T C17747T A17858G C18060T A27237T T28144C A29869D -29904ANANANANANA

EPI_ISL_416637 MT252763
 2020-03-12 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW99/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C8782T C17747T A17858G C18060T T28144C -29904ANANAC

EPI_ISL_416638 MT252764
 2020-03-12 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW100/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A31W AACC34HTTH C8782T C17747T A17858G C18060T T28144C -29904AAATAT

EPI_ISL_416661 MT252741
 2020-03-12 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW123/2020
 ATTAAAGGTTTATACCTTCCCAG1- GT24AA AACC34TTTA C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T AAAAAA29898-

EPI_ISL_416662 MT252742
 2020-03-12 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW124/2020
 ATTAAAG1- A34H C8782T C17747T A17858G C18060T T28144C CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_416663 MT252743
 2020-03-12 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW125/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTG1- C8782T C17747T A17858G C18060T T28144C G29862A A29903-

EPI_ISL_416664 MT252744
 2020-03-12 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW126/2020
 ATT1- T10A C8782T C11704T C17747T A17858G C18060T C19961T T28144C AAA29901-

EPI_ISL_416665 MT252745
 2020-03-12 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW127/2020
 ATTAAAGGTTT1- C1238T C8782T C17747T A17858G C18060T T28144C T28924C GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_416666 MT252746
 2020-03-12 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW128/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C8782T C17747T A17858G C18060T T28144C A29903-

EPI_ISL_416667 MT252747
 2020-03-12 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW129/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C8782T T15927G C17747T A17858G C18060T C18401T C26936T T28144C -29904ACANA

EPI_ISL_416671 MT252750
 2020-03-12 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW133/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCAC1- C241T C3037T C14408T G16741T C18877T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_416677 MT252755
 2020-03-12 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW139/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C8782T T15927G C17747T A17858G C18060T G20167T C26936T T28144C C29580T -29904CANANAHA

EPI_ISL_416693 MT252726
 2020-03-12 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW155/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAA1- C241T C1059T C3037T C14408T A23403G G24348T G25563T G29553A GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_417346 MT246454
 2020-03-12 2020-03-25
 United States SARS-CoV-2/human/USA/WA-UW197/2020
 ATTAAAGGT1- C1469T G11083T C14805T T17247C G26144T G29254T AA29902-

EPI_ISL_417347 MT246455
 2020-03-12 2020-03-25
 United States SARS-CoV-2/human/USA/WA-UW198/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- T47Y G332T C5784T C8782T C17747T A17858G C18060T C20823T T28144C A29903-

EPI_ISL_417349 MT246457
 2020-03-12 2020-03-25
 United States SARS-CoV-2/human/USA/WA-UW200/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAG1- C140T TAG4879- C8782T C12213T C17747T A17858G C18060T T28144C A29903-

EPI_ISL_417351 MT246459
 2020-03-12 2020-03-25
 United States SARS-CoV-2/human/USA/WA-UW202/2020
 T2C AAGGTT5- C8782T G11161A C17474T C17747T A17858G C18060T G18149T T28144C A29865G A29869H -29904ANANANANAAA

EPI_ISL_417352 MT246460
 2020-03-12 2020-03-25
 United States SARS-CoV-2/human/USA/WA-UW203/2020
 TTA2GCT C241T C1059T C3037T C14408T A23403G G25563T -29904ANANAAANAAAAA

EPI_ISL_417364 MT246472
 2020-03-12 2020-03-25
 United States SARS-CoV-2/human/USA/WA-UW215/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCT1- C8782T T11320C C17747T A17858G C18060T G25494T T28144C AAAAAAAA29896-

EPI_ISL_417404
 2020-03-12 2020-03-25
 Australia hCoV-19/Australia/NSW50/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C313T C3037T C14408T A23403G GGG28881AAC CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_417452 MT251974
 2020-03-12 2020-03-26
 United States SARS-CoV-2/human/USA/CT-UW238/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCT1- C241T C3037T C14408T C18877T A23403G G25563T G29864V TG29867AA

EPI_ISL_417469 MT911538
 2020-03-12 2020-03-26
 United States SARS-CoV-2/human/USA/MN31-MDH31/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C6078Y G13489R C14408T A23403G G25563T CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

EPI_ISL_417470 MT911539
 2020-03-12 2020-03-26
 United States SARS-CoV-2/human/USA/MN32-MDH32/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13019T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417471 MT911540
 2020-03-12 2020-03-26
 United States SARS-CoV-2/human/USA/MN34-MDH34/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A23403G -29820T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417472 MT911541
 2020-03-12 2020-03-26
 United States SARS-CoV-2/human/USA/MN35-MDH35/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839T

EPI_ISL_417474 MT911543
 2020-03-12 2020-03-26
 United States SARS-CoV-2/human/USA/MN38-MDH38/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3738Y C14408T A23403G G25563T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417475
 2020-03-12 2020-03-26
 United States hCoV-19/USA/MN39-MDH39/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T A4912C C14805T C17010A G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417476 MT911544
 2020-03-12 2020-03-26
 United States SARS-CoV-2/human/USA/MN40-MDH40/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C11916T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417477 MT911545
 2020-03-12 2020-03-26
 United States SARS-CoV-2/human/USA/MN41-MDH41/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G127T C8782T C14322T C17747T A17858G C18060Y A24694T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417479 MT911547
 2020-03-12 2020-03-26
 United States SARS-CoV-2/human/USA/MN43-MDH43/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037Y C14408T A23403R CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417480 MT911548
 2020-03-12 2020-03-26
 United States SARS-CoV-2/human/USA/MN44-MDH44/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4633T C8782T T15927G C17747T A17858G C18060T T21158C C26936T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417696
 2020-03-12 2020-03-27
 Iceland hCoV-19/Iceland/135/2020
 C5142T G5880A G11083T C14805T T17247C G26144T

EPI_ISL_417713
 2020-03-12 2020-03-27
 Iceland hCoV-19/Iceland/130/2020
 C241T C3037T C14408T T22324C A23403G C24054T A25958G C27046T GGG28881AAC

EPI_ISL_417714
 2020-03-12 2020-03-27
 Iceland hCoV-19/Iceland/129/2020
 C241T C3037T C14408T A23403G C24054T A25958G C27046T GGG28881AAC

EPI_ISL_417720
 2020-03-12 2020-03-27
 Iceland hCoV-19/Iceland/138/2020
 C8782T T9445C C17747T A17858G C18060T A24694T T28144C

EPI_ISL_417727
 2020-03-12 2020-03-27
 Iceland hCoV-19/Iceland/127/2020
 C241T C3037T C14408T A23403G G25429T

EPI_ISL_417735
 2020-03-12 2020-03-27
 Iceland hCoV-19/Iceland/134/2020
 C241T C1059T A2786G C3037T C14408T G20419T A23403G G25563T

EPI_ISL_417771
 2020-03-12 2020-03-27
 Iceland hCoV-19/Iceland/131/2020
 C5142T G11083T C14805T T17247C G26144T

EPI_ISL_417784
 2020-03-12 2020-03-27
 Iceland hCoV-19/Iceland/124/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_417785
 2020-03-12 2020-03-27
 Iceland hCoV-19/Iceland/126/2020
 C241T C3037T C14408T A23403G C24054T A25958G C27046T GGG28881AAC

EPI_ISL_417786
 2020-03-12 2020-03-27
 Iceland hCoV-19/Iceland/128/2020
 C241T C3037T A10323G C14408T A20268G A23403G

EPI_ISL_417787
 2020-03-12 2020-03-27
 Iceland hCoV-19/Iceland/132/2020
 C241T C1059T C3037T C14408T A23403G G25563T T27407C

EPI_ISL_417788
 2020-03-12 2020-03-27
 Iceland hCoV-19/Iceland/133/2020
 C241T C3037T C14408T C15324T C21575T A23403G

EPI_ISL_417789
 2020-03-12 2020-03-27
 Iceland hCoV-19/Iceland/136/2020
 C8782T T9445C T17531C C17747T A17858G C18060T G18756T A24694T T28144C

EPI_ISL_417790
 2020-03-12 2020-03-27
 Iceland hCoV-19/Iceland/139/2020
 C241T C3037T A10323G C14408T A20268G A23403G

EPI_ISL_417791
 2020-03-12 2020-03-27
 Iceland hCoV-19/Iceland/140/2020
 C8782T T9445C T17531C C17747T A17858G C18060T G18756T A24694T T28144C

EPI_ISL_417954
 2020-03-12 2020-03-27
 Spain hCoV-19/Spain/Madrid_H3_10/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T C19017T A20268G A23403G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_417957
 2020-03-12 2020-03-27
 Spain hCoV-19/Spain/Madrid_H7_36/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C11704T C14408T A20268G A23403G ACCACACAAGGCAGATGGGCTATATAAACGTTTTC29544- G29734C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_417961
 2020-03-12 2020-03-27
 Spain hCoV-19/Spain/Madrid_H9_38/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C8782T T9477A C14805T G25979T C26681T T28144C C28657T C28863T C29835- AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_417963
 2020-03-12 2020-03-27
 Spain hCoV-19/Spain/Madrid_H10_39/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A20268G A23403G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_417967
 2020-03-12 2020-03-27
 Spain hCoV-19/Spain/Madrid_H11_40/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T C17639T A20268G A23403G C28638T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_418004
 2020-03-12 2020-03-28
 Portugal hCoV-19/Portugal/PT0019/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G G25537T C26150T G27798T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_418005
 2020-03-12 2020-03-28
 Portugal hCoV-19/Portugal/PT0020/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- G11083T C14805T T17247C G26144T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_418182
 2020-03-12 2020-03-28
 Spain hCoV-19/Spain/Madrid_H8_37/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C11704T C14408T A20268G A23403G ACCACACAAGGCAGATGGGCTATATAAACGTTTTC29544- G29734C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_418213
 2020-03-12 2020-03-29
 Senegal hCoV-19/Senegal/094/2020
 C241T C3037T C14408T A23403G G27261T C29421T

EPI_ISL_418227
 2020-03-12 2020-03-29
 France hCoV-19/France/HF2393/2020
 ATTAAAGGTTTATACCTTCCC1- C241T C335T C2416T C3037T C14408T A23403G G25563T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_418228
 2020-03-12 2020-03-29
 France hCoV-19/France/HF2405/2020
 ATTAAAGGTTTATACCTTC1- C241T C1059T C3037T C9803T C14408T C14645T A23403G G25563T C27434T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_418229
 2020-03-12 2020-03-29
 France hCoV-19/France/IDF2410/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C2416T C3037T G8371T C14408T A23403G G25563T TGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29809-

EPI_ISL_418326
 2020-03-12 2020-03-12
 Canada hCoV-19/Canada/ON_PHL7972/2020
 A1- G1397A A2832G G11083T T28688C G29742T AGTGTAC29756- AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418329
 2020-03-12 2020-03-12
 Canada hCoV-19/Canada/ON_PHL5694/2020
 A1- G1440A G2891A C7011T C11074T G11083T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418336
 2020-03-12 2020-03-12
 Canada hCoV-19/Canada/ON_PHL5705/2020
 A1- T8767C C8782T T10771C C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418337
 2020-03-12 2020-03-12
 Canada hCoV-19/Canada/ON_PHL3802/2020
 A1- T8767C C8782T T10771C C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418338
 2020-03-12 2020-03-12
 Canada hCoV-19/Canada/ON_PHL5710/2020
 A1- T8767C C8782T T10771C C12076T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418341
 2020-03-12 2020-03-12
 Canada hCoV-19/Canada/ON_PHL0142/2020
 A1- C8782T C17747T A17858G C18060T C18568T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418351
 2020-03-12 2020-03-12
 Canada hCoV-19/Canada/ON_PHL3575/2020
 A1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418356
 2020-03-12 2020-03-12
 Canada hCoV-19/Canada/ON_PHL6980/2020
 A1- C241T C1059T C3037T C9863T C14408T C17339T A22976G A23403G G25563T G28368A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418358
 2020-03-12 2020-03-12
 Canada hCoV-19/Canada/ON_PHL5756/2020
 A1- C241T C1059T C3037T C11916T C14408T C18998T C22444T A23403G G25563T G29540A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418359
 2020-03-12 2020-03-12
 Canada hCoV-19/Canada/ON_PHL5757/2020
 A1- C241T C1059T C3037T C11916T C14408T C18998T C22444T A23403G G25563T G29540A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418361
 2020-03-12 2020-03-12
 Canada hCoV-19/Canada/ON_PHL1095/2020
 A1- C241T C1059T C3037T C14408T A23403G G25217T G25563T A29866T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418367
 2020-03-12 2020-03-12
 Canada hCoV-19/Canada/ON_PHL7513/2020
 A1- C203T C241T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418368
 2020-03-12 2020-03-12
 Canada hCoV-19/Canada/ON_PHL3458/2020
 A1- A163G C241T C3037T C14408T A16422C A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418372
 2020-03-12 2020-03-12
 Canada hCoV-19/Canada/ON_PHL8458/2020
 A1- C241T C3037T C3373A T13532C C14408T A23403G G25906T GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418375
 2020-03-12 2020-03-12
 Canada hCoV-19/Canada/ON_PHL0141/2020
 A1- C6312A G11083T C13730T C23929T C28311T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418376
 2020-03-12 2020-03-12
 Canada hCoV-19/Canada/ON_PHL3459/2020
 A1- C6312A G11083T C13730T C23929T C28311T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418811
 2020-03-12 2020-03-31
 Canada hCoV-19/Canada/NB_6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G C25433T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_418812
 2020-03-12 2020-03-31
 Canada hCoV-19/Canada/MB_8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T8767C C8782T T10771C C17747T A17858G C18060T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_418838
 2020-03-12 2020-03-31
 Canada hCoV-19/Canada/BC_6404889/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T

EPI_ISL_418843
 2020-03-12 2020-03-31
 Canada hCoV-19/Canada/BC_7277381/2020
 C8782T A17858G C18060T T28144C

EPI_ISL_418846
 2020-03-12 2020-03-31
 Canada hCoV-19/Canada/BC_7553799/2020
 A187G C241T C3037T C14408T A23403G

EPI_ISL_418847
 2020-03-12 2020-03-31
 Canada hCoV-19/Canada/BC_8150537/2020
 C8782T C10789T C17747T A17858G C18060T C20132T T28144C

EPI_ISL_419302 LC547524
 2020-03-12 2020-04-02
 Japan hCoV-19/Japan/P4-2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_419303 LC547525
 2020-03-12 2020-04-02
 Japan hCoV-19/Japan/P4-3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C3037T C14408T A23403G GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_419309 LC547531
 2020-03-12 2020-04-02
 Japan hCoV-19/Japan/P5-1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_419313 MT262993
 2020-03-12 2020-03-30
 Pakistan SARS-Cov-2/human/PAK/Manga1/2020
 TTTCTATTGGTTCTT9721- TTGTATCTCGATGCTTATAAC19516- AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_419563
 2020-03-12 2020-04-02
 Luxembourg hCoV-19/Luxembourg/LNS0156959/2020
 C241T C3037T C14408T C15324T C16887T A23403G CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_419570
 2020-03-12 2020-04-02
 Luxembourg hCoV-19/Luxembourg/LNS1234709/2020
 C241T C3037T C14408T C15324T C16887T A23403G CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_419580
 2020-03-12 2020-04-02
 Luxembourg hCoV-19/Luxembourg/LNS2907333/2020
 C241T C3037T C14408T C15324T C16887T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_419595
 2020-03-12 2020-04-02
 Luxembourg hCoV-19/Luxembourg/LNS7753431/2020
 C241T C1059T C3037T C14408T A23403G G25563T T27299C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_419596
 2020-03-12 2020-04-02
 Luxembourg hCoV-19/Luxembourg/LNS7866283/2020
 C241T G520K C3037T C14408T T19839C G22180A A23403G GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_419602
 2020-03-12 2020-04-02
 Luxembourg hCoV-19/Luxembourg/LNS9324837/2020
 C241T C1059T C3037T C4320T C14408T A23403G G25563T C25688T ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_419708 MT339043
 2020-03-12 2020-04-03
 United States SARS-CoV-2/human/USA/VA-DCLS-0014/2020
 ATT1- C241T C1059T C3037T C3253T C14408T A23403G G25563T TGTTGCGGCAATAGTGTTTATAACACTTTGCTTCACACTC27702- C29870M

EPI_ISL_419710 MT322406
 2020-03-12 2020-04-08
 United States SARS-CoV-2/human/USA/VA-DCLS-0016/2020
 ATTAAAGGTTTATACCT1- C241T C2416T C3037T C10626T C10712T C14408T C22444T A23403G G25563T

EPI_ISL_419759 MT450962
 2020-03-12 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC47/2020
 ATTAAAGGTTTATACC1- A2480G C2558T T6971C G6975T G6977A C9170T G11083T C14805T G23755C G26144T

EPI_ISL_419762 MT450963
 2020-03-12 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC48/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C3037T C14408T C21301M A23403G G25563T

EPI_ISL_419764 MT450964
 2020-03-12 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC49/2020
 ATTAAAGGTT1- C241T C1059T C3037T C14408T C18060T A23403G G25563T

EPI_ISL_419766 MT450965
 2020-03-12 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC50/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_419768 MT450967
 2020-03-12 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC52/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T T11638C C13047T C14408T A23403G GGG28881AAC C29708T

EPI_ISL_419769 MT450968
 2020-03-12 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC53/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- T490A C3177T C8782T T18736C G19684T C24034T T26729C C27635T G28077C T28144C A29700G

EPI_ISL_419770 MT450969
 2020-03-12 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC54/2020
 ATTAAAGGTTTA1- C241T C3037T C14408T A23403G A26530G

EPI_ISL_419776 MT450970
 2020-03-12 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC55/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G11083T C14805T T17247C C18457T G26144T

EPI_ISL_419777 MT450971
 2020-03-12 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC56/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- T490A C3177T C8782T T18736C G19684T C24034T A25050G T26729C C27635T G28077C T28144C A29700G

EPI_ISL_419779 MT450972
 2020-03-12 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC57/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- A1646G C8782T C17747T A17858G C18060T T28144C

EPI_ISL_419784 MT450973
 2020-03-12 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC58/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C1076T G1397A G11083T T28688C G29742T

EPI_ISL_419826 MT450966
 2020-03-12 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC51/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- T490A C3177T C8782T T18736C G19684T C24034T T26729C C27635T G28077C T28144C C29085T A29700G GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_420039
 2020-03-12 2020-04-04
 France hCoV-19/France/GE2720/2020
 C241T C3037T C14408T C15324T A23403G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_420040
 2020-03-12 2020-04-04
 France hCoV-19/France/GE2722/2020
 C241T C3037T C14408T C15324T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_420111
 2020-03-12 2020-04-05
 Singapore hCoV-19/Singapore/34/2020
 ATTAAAGGTTTA1- C9502Y A19116R C21711T C24477Y T26232Y TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_420126
 2020-03-12 2020-04-05
 Spain hCoV-19/Spain/Valencia42/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420127
 2020-03-12 2020-04-05
 Spain hCoV-19/Spain/Valencia43/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420128
 2020-03-12 2020-04-05
 Spain hCoV-19/Spain/Valencia44/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C29144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420292
 2020-03-12 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C0655/2020
 A2480G C2558T G11083T C14805T C15755T G26144T

EPI_ISL_420901
 2020-03-12 2020-04-07
 Germany hCoV-19/Germany/BAV-V2010840/2020
 C241T C3037T C12756T C14408T A23403G C28121T

EPI_ISL_421501
 2020-03-12 2020-04-08
 France hCoV-19/France/IDF2359/2020
 C241T C1059T C3037T T13006C C14408T A23403G G25563T C25688T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421502
 2020-03-12 2020-04-08
 France hCoV-19/France/IDF2412/2020
 C241T C1059T C3037T G11083T C14408T C17822T C21622A A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421503
 2020-03-12 2020-04-08
 France hCoV-19/France/IDF2414/2020
 C241T C1059T C3037T G11083T T14394C C14408T G16852T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421669
 2020-03-12 2020-04-09
 India hCoV-19/India/1616/2020
 ATTAAAGGTTTAT1- C884T G1397A G8653T G11083T A19182G G19735T T28688C G29742T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_421670
 2020-03-12 2020-04-09
 India hCoV-19/India/1617/2020
 A4G C884T G1397A G6220A G8653T T10667C G11083T C22792A CA28253AC T28688C G28913T G29742T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_421671
 2020-03-12 2020-04-09
 India hCoV-19/India/1621/2020
 ATTAAAGGTTTAT1- C835T C884T G1397A G8653T G11083T G23426A T28688C G29742T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_421672
 2020-03-12 2020-04-09
 India hCoV-19/India/1644/2020
 ATTAAAGGTTTATAC1- C884T G1397A C8043T G8653T G11083T A26226G T28688C G29742T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_422877 LR877746
 2020-03-12 2020-04-11
 Netherlands hCoV-19/Netherlands/NoordBrabant_82/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- G29449T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_424363
 2020-03-12 2020-04-13
 India hCoV-19/India/1652/2020
 ATTAAAGGTTTATACCTTCCCA1- C884T G1397A T8329A T8336A T8347A G8653T G11083T A26226G T28688C G29742T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_424673
 2020-03-12 2020-04-13
 Mexico hCoV-19/Mexico/CDMX-InDRE_06/2020
 C936T C8782T G11083T C17747T A17858G C18060T A24694T T28144C G28812T AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_425468
 2020-03-12 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10DF05/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_425470
 2020-03-12 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10DF23/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_425662
 2020-03-12 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR118/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425674
 2020-03-12 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR131/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425692
 2020-03-12 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR15/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C541T C1059T C3037T G11083T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425699
 2020-03-12 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR16/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- G18090T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425720
 2020-03-12 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR18/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C3037T C14408T G18651T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425724
 2020-03-12 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR19/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C3037T C14408T G18651T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425749
 2020-03-12 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR23/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G27163T G28329T T29360C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425756
 2020-03-12 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR27/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C23086T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425757
 2020-03-12 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR28/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425763
 2020-03-12 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR34/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1483A C3037T C14408T A23403G G24751T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425785
 2020-03-12 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR56/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_425788
 2020-03-12 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR58/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G18443K A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425790
 2020-03-12 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR62/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425813
 2020-03-12 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR89/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C7869T G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425815
 2020-03-12 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR91/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G C28854T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_425828
 2020-03-12 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB022/2020
 C241T C3037T C14408T A23403G

EPI_ISL_425829
 2020-03-12 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB023/2020
 C14408T

EPI_ISL_425830
 2020-03-12 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB024/2020
 C241T C3037T C14408T A23403G

EPI_ISL_425843
 2020-03-12 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB037/2020
 C14805T C19484T G28842T

EPI_ISL_425848
 2020-03-12 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB044/2020
 

EPI_ISL_426322
 2020-03-12 2020-04-15
 United States hCoV-19/USA/NY-Wadsworth-14726-02/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- A2480G C2558T A10024G G11083T T14706C C14805T C17010A C21575T G26144T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426361
 2020-03-12 2020-04-16
 Mexico hCoV-19/Mexico/CDMX-INCMNSZ_01/2020
 C8782T C17747T A17858G C18060T C21707T C23422T A24694T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_426363
 2020-03-12 2020-04-16
 Mexico hCoV-19/Mexico/CDMX-INCMNSZ_03/2020
 C8782T C17747T A17858G C18060T C21707T C23422T A24694T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_426364
 2020-03-12 2020-04-16
 Mexico hCoV-19/Mexico/CDMX-INCMNSZ_04/2020
 C8782T C17747T A17858G C18060T C21707T C23422T A24694T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_426518
 2020-03-12 2020-04-17
 United States hCoV-19/USA/AZ-TG268915/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426531
 2020-03-12 2020-04-17
 United States hCoV-19/USA/AZ-TG269883/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_427526
 2020-03-12 2020-04-19
 United States hCoV-19/USA/NY-WCMP2C03P/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871MG

EPI_ISL_427527
 2020-03-12 2020-04-19
 United States hCoV-19/USA/NY-WCMP2D02P/2020
 C8782T C17747T A17858G C18060T A21404G T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872G

EPI_ISL_427528
 2020-03-12 2020-04-19
 United States hCoV-19/USA/NY-WCMP2D04P/2020
 C241T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872G

EPI_ISL_427529
 2020-03-12 2020-04-19
 United States hCoV-19/USA/NY-WCMP2H03P/2020
 C241T C1059T C3037T C14408T G15760A A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871RG

EPI_ISL_427530
 2020-03-12 2020-04-19
 United States hCoV-19/USA/NY-WCMP3E02P/2020
 C241T C1059T C3037T C11916T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871RG

EPI_ISL_428692
 2020-03-12 2020-04-21
 Spain hCoV-19/Spain/Madrid_H12_29/2020
 ATTAAAGGTTTATACCTTC1- C8782T T9477A C14805T A22151G G25979T C28087T T28144C C28657T C28863T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861A

EPI_ISL_428693
 2020-03-12 2020-04-21
 Spain hCoV-19/Spain/Madrid_H12_30/2020
 AT1TG A4T C241T C1059T C3037T C14408T A23403G G25563T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_428694
 2020-03-12 2020-04-21
 Spain hCoV-19/Spain/Madrid_H12_31/2020
 ATTAAAGGTTTATACCTT1- C241T C3037T A6248C C14408T A20268G A23403G C25413T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_428695
 2020-03-12 2020-04-21
 Spain hCoV-19/Spain/Madrid_H12_32/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C12068T C14408T C16952T A20268G A23403G T29848A A29850T A29860T GAGA29862TTAG GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_428696
 2020-03-12 2020-04-21
 Spain hCoV-19/Spain/Madrid_H12_33/2020
 ATTAAAGGTTTATA1- T25G C241T C3037T C14408T A20268G A23403G -29826T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_428697
 2020-03-12 2020-04-21
 Spain hCoV-19/Spain/Madrid_H12_34/2020
 ATTAAAGGTTT1- C3373T G11083T G26144T G28209C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_428698
 2020-03-12 2020-04-21
 Spain hCoV-19/Spain/Madrid_H12_35/2020
 ATTAAAGGTTTATACCTT1- A5838C C8782T G18186T C20611T C26088T T28144C TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_429123
 2020-03-12 2020-04-23
 Sweden hCoV-19/Sweden/20-08169/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_429124
 2020-03-12 2020-04-23
 Sweden hCoV-19/Sweden/20-08170/2020
 C241T C3037T C14408T A21137G A23403G

EPI_ISL_429125
 2020-03-12 2020-04-23
 Sweden hCoV-19/Sweden/20-08173/2020
 C241T C3037T A13947T C14408T A23403G GGG28881AAC

EPI_ISL_429160
 2020-03-12 2020-04-23
 Sweden hCoV-19/Sweden/20-50312/2020
 A187G C241T C3037T C14408T C14741T A23403G

EPI_ISL_429161
 2020-03-12 2020-04-23
 Sweden hCoV-19/Sweden/20-50315/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T

EPI_ISL_429256
 2020-03-12 2020-04-23
 Spain hCoV-19/Spain/Vircell001/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T A6248C C14408T A20268G A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_429289
 2020-03-12 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH31/2020
 C241T C1059T C1302T C3037T C14408T C14585T A23403G G25563T

EPI_ISL_429525
 2020-03-12 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI426/2020
 C241T C1059T C3037T C14408T G20275T A23403G G25563T

EPI_ISL_429811
 2020-03-12 2020-04-24
 Canada hCoV-19/Canada/NB_21/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G C25433T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_430114 MT627613
 2020-03-12 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S260/2020
 C8782T C17747T A17858G C18060T T27222C T27384C T28144C

EPI_ISL_430127 MT627636
 2020-03-12 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S273/2020
 C1419T C8782T G14126A C17747T A17858G C18060T T28144C

EPI_ISL_430175 MT632562
 2020-03-12 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S138/2020
 C8782T C17747T A17858G C18060T A24667G T28144C

EPI_ISL_430176 MT632595
 2020-03-12 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S139/2020
 C8782T C17747T A17858G C18060T T23010C T28144C

EPI_ISL_430177 MT632598
 2020-03-12 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S140/2020
 C8782T C17747T A17858G C18060T T23010C T28144C

EPI_ISL_430854
 2020-03-12 2020-04-28
 Sweden hCoV-19/Sweden/20-08171/2020
 C241T C3037T A13947T C14408T A23403G GGG28881AAC

EPI_ISL_430855
 2020-03-12 2020-04-28
 Sweden hCoV-19/Sweden/20-08172/2020
 C241T C1059T C3037T C14408T G20419T A23403G G25563T C26895T

EPI_ISL_430877 MT412248
 2020-03-12 2020-04-28
 United States SARS-CoV-2/human/USA/WA-UW-524/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A31T C36T C8782T C17747T A17858G C18060T T28144C CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_430880 MT412247
 2020-03-12 2020-04-28
 United States SARS-CoV-2/human/USA/WA-UW-530/2020
 A1- T3G A31T C36T C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_430883 MT412250
 2020-03-12 2020-04-28
 United States SARS-CoV-2/human/USA/WA-UW-542/2020
 ATTAAAGGTTT1- TA13AG C16A T18G AG22GA C36Y C8782T C17747T A17858G C18060T T28144C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_430884 MT412249
 2020-03-12 2020-04-28
 United States SARS-CoV-2/human/USA/WA-UW-543/2020
 ATTAAA1- C36T C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_430885 MT412251
 2020-03-12 2020-04-28
 United States SARS-CoV-2/human/USA/WA-UW-546/2020
 ATTAA1- A31T C36T C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_430889 MT412244
 2020-03-12 2020-04-28
 United States SARS-CoV-2/human/USA/WA-UW-572/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A31W AC35HT C8782T C17747T A17858G C18060T G22984A T27384C T28144C -29904AAAAAAAAAA

EPI_ISL_430890 MT412243
 2020-03-12 2020-04-28
 United States SARS-CoV-2/human/USA/UNKNOWN-UW-581/2020
 ATTAAAGGTTT1- A31W C36T C8782T C17747T A17858G C18060T T28144C A28910T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_430891 MT412236
 2020-03-12 2020-04-28
 United States SARS-CoV-2/human/USA/WA-UW-586/2020
 ATTAAAGGTTTATAC1- CCCAGGTAACAAACCAA19- C36T C241T T833C C1059T C3037T G11222T C14408T C14676T A23403G G25563T C27964T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_430892 MT412238
 2020-03-12 2020-04-28
 United States SARS-CoV-2/human/USA/WA-UW-596/2020
 ATTAAAGGTTTATACCTTCCCA1- C36T C8782T C17747T A17858G C18060T C18788T C21306T A27525G T28144C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_430893 MT412240
 2020-03-12 2020-04-28
 United States SARS-CoV-2/human/USA/WA-UW-600/2020
 ATTAAAGGTTTATA1- A34W C36T C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_430894 MT412237
 2020-03-12 2020-04-28
 United States SARS-CoV-2/human/USA/WA-UW-602/2020
 ATTAAAGGTTTAT1- A14T CCCAGGTAACAAACCAA19- C36T C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_434467
 2020-03-12 2020-04-29
 Greece hCoV-19/Greece/141/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T C16073T A23403G GGG28881AAC C28887T TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_434472
 2020-03-12 2020-04-29
 Greece hCoV-19/Greece/139/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGG28881AAC TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_434485
 2020-03-12 2020-04-29
 Greece hCoV-19/Greece/150/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C2508T G9190T G11083T C14805T G15919T T17247C G26144T G26172A TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_434646
 2020-03-12 2020-04-30
 Sweden hCoV-19/Sweden/20-05653/2020
 C241T C1059T C1093T C1302T C2197T C3037T C14408T A23403G G25563T

EPI_ISL_435060
 2020-03-12 2020-05-02
 India hCoV-19/India/NCDC-01257/2020
 C241T C1601A C2040T C3037T T6552K T8022K T12339Y C14408T G16917K C17885Y C18377M T18690K A20255R T22515Y A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_435119
 2020-03-12 2020-05-03
 United Arab Emirates hCoV-19/United Arab Emirates/L0/2020
 C241T C1059T C3037T C14408T C21781T A23403G G25563T G26775T C29415T

EPI_ISL_435123
 2020-03-12 2020-05-03
 United Arab Emirates hCoV-19/United Arab Emirates/L0484/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_435130
 2020-03-12 2020-05-03
 United Arab Emirates hCoV-19/United Arab Emirates/L2185/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_435140
 2020-03-12 2020-05-03
 United Arab Emirates hCoV-19/United Arab Emirates/L7356/2020
 C241T C3037T G4201T C14408T A23403G C26527T

EPI_ISL_435141
 2020-03-12 2020-05-03
 United Arab Emirates hCoV-19/United Arab Emirates/L9440/2020
 C241T C1997T C3037T C8290T C14408T C17678T A23403G A24110T

EPI_ISL_435639
 2020-03-12 2020-05-05
 United States hCoV-19/USA/CA-SCCPHD-UC160/2020
 G29711T

EPI_ISL_435641
 2020-03-12 2020-05-05
 United States hCoV-19/USA/CA-SCCPHD-UC162/2020
 C26032T G29711T

EPI_ISL_435643
 2020-03-12 2020-05-05
 United States hCoV-19/USA/CA-SCCPHD-UC164/2020
 C241T C3037T C13517T C14408T A23403G C25350T

EPI_ISL_436210
 2020-03-12 2020-05-06
 Spain hCoV-19/Spain/Valencia115/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G11083T G26144T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_436211
 2020-03-12 2020-05-06
 Spain hCoV-19/Spain/Valencia116/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C8782T T9477A A10323G C14805T G24928T G25979T T28144C C28657T C28863T G29742A TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_436295
 2020-03-12 2020-05-06
 Spain hCoV-19/Spain/Valencia200/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C14408T A23403G C29144T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_436808 MT439237
 2020-03-12 2020-05-06
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20179/2020
 ATTAAAGGTT1- C241T C1059T C3037T A5011M T9046C C14408T T19584Y A23403G G25563T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_437211
 2020-03-12 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0010/2020
 C241T C3037T C12756T C14408T A23403G C28121T

EPI_ISL_437218
 2020-03-12 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0017/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_437223
 2020-03-12 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0023/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_437249
 2020-03-12 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0050/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_437250
 2020-03-12 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0051/2020
 C241T C3037T A7881G C14408T A23403G C27046T C28344A GGG28881AAC

EPI_ISL_437609 MT447169
 2020-03-12 2020-05-01
 Thailand SARS-CoV-2/human/THA/SI204514-NT/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- A895G C2942T G4390T C8782T C9598T G20134T G24047A T28144C CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

EPI_ISL_437610 MT447168
 2020-03-12 2020-05-01
 Thailand SARS-CoV-2/human/THA/SI204512-NT/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- G90T C241T C3037T C14408T G20398A C21156T A23403G G24056T A26530G CGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29733-

EPI_ISL_437876 MT459870
 2020-03-12 2020-05-11
 Greece SARS-CoV-2/human/GRC/202_32984/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGG28881AAC C28887T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_437877 MT459872
 2020-03-12 2020-05-11
 Greece SARS-CoV-2/human/GRC/204_33112/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C2434T C3037T C14408T A23403G C25350T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_437921
 2020-03-12 2020-05-12
 Austria hCoV-19/Austria/CeMM0032/2020
 C241T C1059T C3037T C14117T C14408T A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_437922
 2020-03-12 2020-05-12
 Austria hCoV-19/Austria/CeMM0033/2020
 C241T C1059T C3037T C14408T T22521K A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_437940
 2020-03-12 2020-05-12
 Austria hCoV-19/Austria/CeMM0068/2020
 C241T C3037T G4255T C14408T A23403G A26530R AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_437968
 2020-03-12 2020-05-12
 Austria hCoV-19/Austria/CeMM0109/2020
 C241T C3037T C14408T C15324T A23403G A23558G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_437969
 2020-03-12 2020-05-12
 Austria hCoV-19/Austria/CeMM0111/2020
 C241T C3037T C14408T A23403G GGG28881AAC G29540T AAAAAAAAAAAAAAAAAAA29885-

EPI_ISL_443198
 2020-03-12 2020-05-12
 Singapore hCoV-19/Singapore/106/2020
 C241T C1059T C3037T C14408T G15760A A23403G G25563T AAAAAAAAAAAA29892-

EPI_ISL_444519 EPI_ISL_454691
 2020-03-12 2020-05-28
 United States hCoV-19/USA/NY-QDX-01-2/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_445109
 2020-03-12 2020-05-15
 United States hCoV-19/USA/CA-SR0118/2020
 C884T G1397A G8653T G11083T C20628T A25980C T28688C G29742T

EPI_ISL_445264
 2020-03-12 2020-05-15
 Chile hCoV-19/Chile/Santiago_21/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C14408T C19170T G19509A A23403G GGG28881AAC C29109T TCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29834C

EPI_ISL_445266
 2020-03-12 2020-05-15
 Chile hCoV-19/Chile/Antofagasta_1/2020
 ATTA1GAAT C8090T C8782T C13115T C13665T A19667G T25541C C26088T A27797R T28144C GGAGAAT29861- AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_445267
 2020-03-12 2020-05-15
 Chile hCoV-19/Chile/Antofagasta_2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C8782T C13115T C13665T T25541C C26088T T28144C ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_445331
 2020-03-12 2020-05-15
 Chile hCoV-19/Chile/Chillan_2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T G10265A C14408T A23403G GGG28881AAC ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_445333
 2020-03-12 2020-05-15
 Chile hCoV-19/Chile/Concepcion_2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- A34G C241T C3037T C12546T C14408T A20268G A23403G CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838T

EPI_ISL_445357
 2020-03-12 2020-05-15
 Chile hCoV-19/Chile/Santiago_61/2020
 TT2CA -AG5CCA -14GATCCTTTGCA -18GAATTAGACTCA C241T G1319A C3037T C8389T C14408T A23403G G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_447636 MT459871
 2020-03-12 2020-05-11
 Greece SARS-CoV-2/human/GRC/203_33026/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_450086
 2020-03-12 2020-05-20
 United States hCoV-19/USA/NY-PV09406/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450090
 2020-03-12 2020-05-20
 United States hCoV-19/USA/NY-PV09410/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCT1- C241T C1059T C3037T C14408T A23403G G25563T GTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29759-

EPI_ISL_450094
 2020-03-12 2020-05-20
 United States hCoV-19/USA/NY-PV09414/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T C3037T G10265A C14408T A23403G GGG28881AAC AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450095
 2020-03-12 2020-05-20
 United States hCoV-19/USA/NY-PV09415/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450098
 2020-03-12 2020-05-20
 United States hCoV-19/USA/NY-PV09419/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G G25563T C25688A GCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29773-

EPI_ISL_450102
 2020-03-12 2020-05-20
 United States hCoV-19/USA/NY-PV09423/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C2676T T6329C C8782T A22606T T28144C G28878A G29742A AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450106
 2020-03-12 2020-05-20
 United States hCoV-19/USA/NY-PV09429/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450107
 2020-03-12 2020-05-20
 United States hCoV-19/USA/NY-PV09430/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C3037T G4255T C14408T T16456G C20051T A23403G A26530G AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450109
 2020-03-12 2020-05-20
 United States hCoV-19/USA/NY-PV09432/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTT1- C241T C506T C3037T C14408T A20268G A23403G AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_450118
 2020-03-12 2020-05-20
 United States hCoV-19/USA/NY-PV09441/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_450121
 2020-03-12 2020-05-20
 United States hCoV-19/USA/NY-PV09446/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATC1- C241T C1059T C3037T C14408T A23403G G25563T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_450834
 2020-03-12 2020-05-22
 Sweden hCoV-19/Sweden/20-08168/2020
 C241T C1059T C3037T C14408T G17721T C21952T A23403G G25563T C27294T

EPI_ISL_451669 LR824229
 2020-03-12 2020-05-25
 Switzerland 100076
 C241T C3037T A5958G C14408T C15324T C22413Y A23403G

EPI_ISL_451688 LR824243
 2020-03-12 2020-05-25
 Switzerland 100096
 C241T C1059T C3037T C14408T G15380K A19298W T22516W A23403G G25563T

EPI_ISL_452025
 2020-03-12 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-148/2020
 C241T C1059T C1302T C3037T C14408T A23403G G25563T

EPI_ISL_452331
 2020-03-12 2020-05-27
 China hCoV-19/Beijing/DT-travelCA01/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_452333
 2020-03-12 2020-05-27
 China hCoV-19/Beijing/DT-travelIRI01/2020
 C16A C884T G1397A T8022G G8653T T20891G T28688C G29742T

EPI_ISL_452342
 2020-03-12 2020-05-27
 China hCoV-19/Beijing/DT-travelNO01/2020
 A23403G AG24389CC G28881A

EPI_ISL_452344
 2020-03-12 2020-05-27
 China hCoV-19/Beijing/DT-travelES02/2020
 C203T T8395A C14805T A22151G G25979T T28144C C28657T C28863T

EPI_ISL_452531
 2020-03-12 2020-05-27
 Spain hCoV-19/Spain/COV001370/2020
 C241T C3037T C4058T A7807R C14408T A20268G A23403G G28881T G29734C

EPI_ISL_452535
 2020-03-12 2020-05-27
 Spain hCoV-19/Spain/COV001366/2020
 C2040T C8782T G11083T C26088T T28144C

EPI_ISL_454006
 2020-03-12 2020-05-28
 Portugal hCoV-19/Portugal/PT0290/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3140T C14408T A23403G G24077T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454009
 2020-03-12 2020-05-28
 Portugal hCoV-19/Portugal/PT0293/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- C241T C3037T C14408T A23403G G24077T CGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29754-

EPI_ISL_454787
 2020-03-12 2020-05-29
 Netherlands hCoV-19/Netherlands/Utrecht_10038/2020
 ATTAAA1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T A28305G GGG28881AAC AAAAAA29898-

EPI_ISL_454944
 2020-03-12 2020-05-29
 China hCoV-19/Wuhan/HB-WH3-183/2020
 A9243G G11083T

EPI_ISL_454983
 2020-03-12 2020-05-29
 China hCoV-19/Wuhan/HB-WH6-246/2020
 C15981T T26729C G28077C T28144C

EPI_ISL_455122
 2020-03-12 2020-05-29
 Netherlands hCoV-19/Netherlands/Gelderland_13/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C829T C1594T C3037T C11109T G14241T C14408T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455123
 2020-03-12 2020-05-29
 Netherlands hCoV-19/Netherlands/Gelderland_14/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C11109T C12073T C14408T C16049T A23403G G25563T A27440C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455292
 2020-03-12 2020-05-29
 Netherlands hCoV-19/Netherlands/Utrecht_24/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5310T C14408T G18907T G20940A A23403G C24382T C27046T GGG28881AAC G29751C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455293
 2020-03-12 2020-05-29
 Netherlands hCoV-19/Netherlands/Utrecht_25/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C3037T C14408T C16017T T16515C A23403G G27074A GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455380
 2020-03-12 2020-05-29
 China hCoV-19/Wuhan/HB-WH3-184/2020
 TG14865- C22482T

EPI_ISL_455436
 2020-03-12 2020-05-29
 Mexico hCoV-19/Mexico/CDMX-InDRE_12/2020
 ATTAAAGGTTTA1- C241T C1387T C3037T C14408T A20268G A23403G G25337T G29734C TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_455456
 2020-03-12 2020-05-29
 Mexico hCoV-19/Mexico/CDMX-InDRE_18/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C8782T C26088T T28144C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_455624
 2020-03-12 2020-06-01
 Thailand hCoV-19/Thailand/Bangkok_2295/2020
 A895G C2942T G4390T C8782T C9598T G20134T G24047A T28144C AAAAAAAAAAAA29892-

EPI_ISL_455922
 2020-03-12 2020-06-01
 Thailand hCoV-19/Thailand/Bangkok-CONI-0128/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- G11083T C14805T T17247C G26144T

EPI_ISL_455925
 2020-03-12 2020-06-01
 Thailand hCoV-19/Thailand/Bangkok-CONI-0131/2020
 ATTAAAG1- A895G C2942T C3768Y G4390T C8782T C9598T G20134T G24047A G27877T T28144C C29245Y

EPI_ISL_457154
 2020-03-12 2020-06-02
 United Kingdom hCoV-19/England/EXET-135CC1/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_457721
 2020-03-12 2020-06-02
 Italy hCoV-19/Italy/4411/2020
 C241T C3037T C14408T A23403G GGG28881AAC AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_459863
 2020-03-12 2020-06-04
 Chile hCoV-19/Chile/Talca-25343/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462255
 2020-03-12 2020-06-08
 Belgium hCoV-19/Belgium/REGA-0312401/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1457T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_464793
 2020-03-12 2020-06-11
 United Kingdom hCoV-19/England/201160271/2020
 C241T C3037T GT5743SY C14408T C16289T A23403G G25429T

EPI_ISL_464800
 2020-03-12 2020-06-11
 United Kingdom hCoV-19/England/201160647/2020
 C241T C3037T C14408T A23403G A26530R

EPI_ISL_464852
 2020-03-12 2020-06-11
 United Kingdom hCoV-19/England/201161525/2020
 ATG1605-

EPI_ISL_464874
 2020-03-12 2020-06-11
 United Kingdom hCoV-19/England/201180001/2020
 C241T C3037T C14408T T17835C A23403G

EPI_ISL_464879
 2020-03-12 2020-06-11
 United Kingdom hCoV-19/England/201180067/2020
 C936T -11075TTT G11083T C14318T C14805T C23707T G26144T

EPI_ISL_464939
 2020-03-12 2020-06-11
 United Kingdom hCoV-19/England/20118070604/2020
 A2480G C2558T G11083T C14805T G26144T

EPI_ISL_464958
 2020-03-12 2020-06-11
 United Kingdom hCoV-19/England/20118123004/2020
 C241T C3037T C3373A C11195T C14408T A23403G GGG28881AAC A29467T

EPI_ISL_464972
 2020-03-12 2020-06-11
 United Kingdom hCoV-19/England/20118143104/2020
 G1440A G2891R C10507T G11299T C19113T G28077T

EPI_ISL_464973
 2020-03-12 2020-06-11
 United Kingdom hCoV-19/England/20118143704/2020
 A2480G C2558T G4105K T10480C G11083T C14805T T26130C G26144T C27559T

EPI_ISL_464976
 2020-03-12 2020-06-11
 United Kingdom hCoV-19/England/20118147904/2020
 G11083T C14805T T17247C G26144T

EPI_ISL_464978
 2020-03-12 2020-06-11
 United Kingdom hCoV-19/England/20118148804/2020
 ATG1605- C10450Y

EPI_ISL_464979
 2020-03-12 2020-06-11
 United Kingdom hCoV-19/England/20118151104/2020
 A2480G C2558T G11083T C14805T T16309C G26144T

EPI_ISL_464980
 2020-03-12 2020-06-11
 United Kingdom hCoV-19/England/20118151404/2020
 A2480G C2558T G11083T C14805T G26144T

EPI_ISL_464985
 2020-03-12 2020-06-11
 United Kingdom hCoV-19/England/20118158504/2020
 G11083T C14805T C23707T G26144T

EPI_ISL_464989
 2020-03-12 2020-06-11
 United Kingdom hCoV-19/England/20118164704/2020
 C21T G1413R A1515G C9223T -11075TTT G11083T C14805T T17247C C17626T C19781Y G26144T

EPI_ISL_465001
 2020-03-12 2020-06-11
 United Kingdom hCoV-19/England/20119000304/2020
 C241T C3037T C14408T A23403G A26530R G29468T

EPI_ISL_465002
 2020-03-12 2020-06-11
 United Kingdom hCoV-19/England/20119000404/2020
 C241T C3037T C3373A C11195T C14408T C17440T T20123C A23403G GGG28881AAC

EPI_ISL_465030
 2020-03-12 2020-06-11
 United Kingdom hCoV-19/England/20119011704/2020
 A187G C241T C3037T C14408T C14741T A23403G

EPI_ISL_465039
 2020-03-12 2020-06-11
 United Kingdom hCoV-19/England/20119029504/2020
 C241T C3037T C3373A C11195T C14408T C15216T A23403G GGG28881AAC

EPI_ISL_465046
 2020-03-12 2020-06-11
 United Kingdom hCoV-19/England/20119032104/2020
 C241T C3037T C3373A C11195T C14408T A23403G GGG28881AAC

EPI_ISL_465049
 2020-03-12 2020-06-11
 United Kingdom hCoV-19/England/20119033504/2020
 C66T C7334T A7479G C9144Y G11083T C14805T C15222T T17247C C21575T C25572T G26144T

EPI_ISL_465065
 2020-03-12 2020-06-11
 United Kingdom hCoV-19/England/20119044404/2020
 A2480G C2558T G11083T C14805T C18348T T19728Y C23557T G26144T

EPI_ISL_465083
 2020-03-12 2020-06-11
 United Kingdom hCoV-19/England/20119059404/2020
 C241T C3037T C13511T C14408T A23403G GGG28881AAC

EPI_ISL_465091
 2020-03-12 2020-06-11
 United Kingdom hCoV-19/England/20119064904/2020
 G11083T C14805T T17247C G26144T

EPI_ISL_466977 LR824093
 2020-03-12 2020-06-12
 Switzerland 100055
 C241T C3037T C12085Y C14408T C15324T A15887M G16188T T19350W C22413M A23403G

EPI_ISL_466979 LR824097
 2020-03-12 2020-06-12
 Switzerland 100057
 C241T C3037T C14408T A20268G G21538K A22411R A23403G C28854T

EPI_ISL_466980 LR824088
 2020-03-12 2020-06-12
 Switzerland 100058
 C241T C3037T A12825R C14408T C15324T C22347S T22372Y A23403G C28854T

EPI_ISL_466991 LR824101
 2020-03-12 2020-06-12
 Switzerland 100069
 C241T C3037T C4901T C6286T C14408T A19298W C19318Y C19360Y A23403G GGG28881AAC

EPI_ISL_466995 LR824099
 2020-03-12 2020-06-12
 Switzerland 100073
 C241T C3037T A8072G C14408T A19298W T19316Y G19507K A23403G GGG28881AAC C29739T

EPI_ISL_467090
 2020-03-12 2020-06-12
 Spain hCoV-19/Spain/COV002595/2020
 C241T C3037T C12242T C14408T T19839C A23403G GGG28881AAC

EPI_ISL_467097
 2020-03-12 2020-06-12
 Spain hCoV-19/Spain/COV001531/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T C29870A

EPI_ISL_467103
 2020-03-12 2020-06-12
 Spain hCoV-19/Spain/COV001587/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T C29870A

EPI_ISL_467113
 2020-03-12 2020-06-12
 Spain hCoV-19/Spain/COV001566/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T

EPI_ISL_467114
 2020-03-12 2020-06-12
 Spain hCoV-19/Spain/COV001553/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T

EPI_ISL_467116
 2020-03-12 2020-06-12
 Spain hCoV-19/Spain/COV001560/2020
 A4293G C8782T T9477A C14805T A23586G G25979T T28144C C28657T C28706T C28863T C29870A

EPI_ISL_467126
 2020-03-12 2020-06-12
 Spain hCoV-19/Spain/COV001601/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T

EPI_ISL_467129
 2020-03-12 2020-06-12
 Spain hCoV-19/Spain/COV001588/2020
 C8782T T9477A G11083T C14805T G25979T T28144C C28657T C28863T C29870A

EPI_ISL_467132
 2020-03-12 2020-06-12
 Spain hCoV-19/Spain/COV001600/2020
 C8782T T9477A C14805T G25244T G25979T T28144C C28657T C28863T

EPI_ISL_467134
 2020-03-12 2020-06-12
 Spain hCoV-19/Spain/COV001611/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T

EPI_ISL_467153
 2020-03-12 2020-06-12
 Spain hCoV-19/Spain/COV001612/2020
 C8782T T9477A C14805T C21997T G25979T T28144C C28657T C28863T C29870A

EPI_ISL_467158
 2020-03-12 2020-06-12
 Spain hCoV-19/Spain/COV001610/2020
 C8782T T9477A C14805T C17410T G25979T T28144C G28643A C28657T C28863T C29870A

EPI_ISL_467165
 2020-03-12 2020-06-12
 Spain hCoV-19/Spain/COV001606/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T C29870A

EPI_ISL_467172
 2020-03-12 2020-06-12
 Spain hCoV-19/Spain/COV001558/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T

EPI_ISL_467599
 2020-03-12 2020-06-14
 United States hCoV-19/USA/NM-UNM-00018/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_467915 MT614510
 2020-03-12 2020-06-15
 United States SARS-CoV-2/human/USA/UT-QDX-17/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T TAG423- C1059T C1887T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467917 MT614512
 2020-03-12 2020-06-15
 United States SARS-CoV-2/human/USA/UT-QDX-20/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17747T A17858G C18060T A24694T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467920 MT614515
 2020-03-12 2020-06-15
 United States SARS-CoV-2/human/USA/UT-QDX-57/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C8782T T18736C C24034T T26729C G28077C T28144C A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467964
 2020-03-12 2020-06-16
 United States hCoV-19/USA/CA-SR0436/2020
 G7798T C8782T C17747T A17858G C18060T C20148T T28144C

EPI_ISL_468572 MT627419
 2020-03-12 2020-06-16
 United States SARS-CoV-2/human/USA/CO-QDX-89/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_468573 MT627420
 2020-03-12 2020-06-16
 United States SARS-CoV-2/human/USA/HI-QDX-163/2020
 C241T C1059T C3037T C14408T G15760A A23403G G25563T

EPI_ISL_468574 MT627421
 2020-03-12 2020-06-16
 United States SARS-CoV-2/human/USA/HI-QDX-164/2020
 C241T C1059T C3037T C14408T G15760A A23403G G25563T

EPI_ISL_468575 MT627422
 2020-03-12 2020-06-16
 United States SARS-CoV-2/human/USA/IN-QDX-85/2020
 ATTAAAG1- C241T C3037T C14408T A23403G

EPI_ISL_468576 MT627423
 2020-03-12 2020-06-16
 United States SARS-CoV-2/human/USA/NY-QDX-100/2020
 ATTAAAGGTTTATACC1- C241T C3037T C14408T C18877T A23403G G25563T

EPI_ISL_468577 MT627424
 2020-03-12 2020-06-16
 United States SARS-CoV-2/human/USA/NY-QDX-102/2020
 C241T C1059T C3037T C14408T A23403G G25563T C29364T

EPI_ISL_468578 MT627425
 2020-03-12 2020-06-16
 United States SARS-CoV-2/human/USA/NY-QDX-105/2020
 ATTAAAGGTT1- C206T A2480G C2558T G11083T G11851T C14805T C17010A A20979T C21575T G26144T

EPI_ISL_468579 MT627426
 2020-03-12 2020-06-16
 United States SARS-CoV-2/human/USA/NY-QDX-106/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_468580 MT627427
 2020-03-12 2020-06-16
 United States SARS-CoV-2/human/USA/NY-QDX-108/2020
 G2305T G11083T G11108T C14805T A15779C T17247C T19506C G26144T

EPI_ISL_468581 MT627428
 2020-03-12 2020-06-16
 United States SARS-CoV-2/human/USA/NY-QDX-109/2020
 C241T C1059T C3037T C3253T C8770T C14408T A23403G G25563T

EPI_ISL_468582 MT627429
 2020-03-12 2020-06-16
 United States SARS-CoV-2/human/USA/NY-QDX-87/2020
 C241T C1059T C3037T C11289T CC14407TT A23403G G25563T C29509T

EPI_ISL_468583 MT627430
 2020-03-12 2020-06-16
 United States SARS-CoV-2/human/USA/NY-QDX-88/2020
 C241T C1059T C3037T C4246T C14408T A23403G G25563T

EPI_ISL_468584 MT627431
 2020-03-12 2020-06-16
 United States SARS-CoV-2/human/USA/NY-QDX-90/2020
 C241T C1059T C3037T C5142T C14408T A23403G G25563T

EPI_ISL_468585 MT627432
 2020-03-12 2020-06-16
 United States SARS-CoV-2/human/USA/NY-QDX-91/2020
 C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_468586 MT627433
 2020-03-12 2020-06-16
 United States SARS-CoV-2/human/USA/NY-QDX-94/2020
 ATTAAAGGTTTATACCTTCCC1- C241T C3037T C8917T C14408T C18877T A23403G G25563T

EPI_ISL_468587 MT627434
 2020-03-12 2020-06-16
 United States SARS-CoV-2/human/USA/NY-QDX-95/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_474910
 2020-03-12 2020-06-23
 Spain hCoV-19/Spain/Las_Palmas-COV002593/2020
 C241T C2094T C3037T A10323G C14408T C14980T A20268G A23403G

EPI_ISL_475085
 2020-03-12 2020-06-23
 Sweden hCoV-19/Sweden/20-08174/2020
 C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_475128
 2020-03-12 2020-06-23
 Sweden hCoV-19/Sweden/20-50298/2020
 C241T C1059T C3037T A10633C C14408T A23403G G24368T G25563T

EPI_ISL_475129
 2020-03-12 2020-06-23
 Sweden hCoV-19/Sweden/20-50299/2020
 C241T C3037T C10376T C14408T A23403G GGG28881AAC

EPI_ISL_475130
 2020-03-12 2020-06-23
 Sweden hCoV-19/Sweden/20-50301/2020
 C241T C3037T A12790G C13568T C14408T A23403G

EPI_ISL_475131
 2020-03-12 2020-06-23
 Sweden hCoV-19/Sweden/20-50304/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_475132
 2020-03-12 2020-06-23
 Sweden hCoV-19/Sweden/20-50305/2020
 G1440A G2891A C7011T

EPI_ISL_475133
 2020-03-12 2020-06-23
 Sweden hCoV-19/Sweden/20-50307/2020
 C241T C1059T C3037T C14408T C19263T A23403G G25563T

EPI_ISL_475134
 2020-03-12 2020-06-23
 Sweden hCoV-19/Sweden/20-50308/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_475135
 2020-03-12 2020-06-23
 Sweden hCoV-19/Sweden/20-50313/2020
 C241T C1059T C3037T C14408T G15380T A23403G G25563T

EPI_ISL_475912
 2020-03-12 2020-06-25
 Austria hCoV-19/Austria/CeMM0562/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3177M C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476906 MT827823
 2020-03-12 2020-06-27
 United States SARS-CoV-2/human/USA/WA-UW-571/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C8782T C16726T C17747T A17858G C18060T T28144C T29410C C29769T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_476910
 2020-03-12 2020-06-27
 United States hCoV-19/USA/UN-UW-629/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAG1- C2061T C8782T C17747T A17858G C18060T G21305A T23010C T28144C TG29867AA -29904AAAAAAAAAAAAAAA

EPI_ISL_476911 MT827831
 2020-03-12 2020-06-27
 United States SARS-CoV-2/human/USA/WA-UW-631/2020
 A1- AA4CT TCAC95ATGA C241T C1059T C3037T C14408T A23403G G25563T C26270T G29553A -29904AAAA

EPI_ISL_476914 MT827832
 2020-03-12 2020-06-27
 United States SARS-CoV-2/human/USA/CT-UW-649/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTG1- C241T C3037T C14408T A23403G GGG28881AAC C29870A

EPI_ISL_476919
 2020-03-12 2020-06-27
 United States hCoV-19/USA/UN-UW-659/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCT1- C241T C1059T C3037T C14408T A23403G G25563T -29904AAAAAAAAAAAAA

EPI_ISL_476920 MT827815
 2020-03-12 2020-06-27
 United States SARS-CoV-2/human/USA/WA-UW-661/2020
 ATTAAAGGTTTATACCTTCC1- C36T C8782T C17747T A17858G C18060T T28144C -29904AAAAAAAAA

EPI_ISL_476922
 2020-03-12 2020-06-27
 United States hCoV-19/USA/UN-UW-666/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- TCAC95ATGA C8782T C17747T A17858G C18060T T23010C G25471T T28144C -29904AAAAAAAAAAAAAAAA

EPI_ISL_476923
 2020-03-12 2020-06-27
 United States hCoV-19/USA/UN-UW-667/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACG1- C8782T C17747T A17858G C18060T T23010C T28144C -29904AAAAAAAAAAAA

EPI_ISL_476924 MT827811
 2020-03-12 2020-06-27
 United States SARS-CoV-2/human/USA/WA-UW-669/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C8782T C15720T C17747T A17858G C18060T T28144C TG29867AA C29870A

EPI_ISL_476925 MT827813
 2020-03-12 2020-06-27
 United States SARS-CoV-2/human/USA/WA-UW-671/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C36T C8782T C17747T A17858G C18060T T28144C -29904AAAAAAAAAAAAAAAA

EPI_ISL_476926
 2020-03-12 2020-06-27
 United States hCoV-19/USA/UN-UW-672/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C2061T C8782T C17747T A17858G C18060T T23010C T28144C

EPI_ISL_476931 MT827835
 2020-03-12 2020-06-27
 United States SARS-CoV-2/human/USA/CT-UW-685/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C3037T C14408T A23403G GGG28881AAC -29904AAAAAAAAAAAAAA

EPI_ISL_476932
 2020-03-12 2020-06-27
 United States hCoV-19/USA/UN-UW-686/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- AACC34TTTH C2061T C8782T C10641T C17747T A17858G C18060T T23010C T28144C -29904AAAAAAAAAAAAAA

EPI_ISL_476936 MT827818
 2020-03-12 2020-06-27
 United States SARS-CoV-2/human/USA/WA-UW-753/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAG1- C8782T C11704T C17747T A17858G C18060T T22020C T28144C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_479855
 2020-03-12 2020-07-01
 Japan hCoV-19/Japan/PG-0128/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C8782T G16381A T17877C T28144C G28878A G29742A TGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29829-

EPI_ISL_479856
 2020-03-12 2020-07-01
 Japan hCoV-19/Japan/PG-0130/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C8782T G16381A T17877C T28144C G28878A G29742A AGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29827-

EPI_ISL_479857
 2020-03-12 2020-07-01
 Japan hCoV-19/Japan/PG-0131/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C8782T G16381A T17877C T28144C G28878A G29742A AATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29818-

EPI_ISL_479858
 2020-03-12 2020-07-01
 Japan hCoV-19/Japan/PG-0132/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C8782T G16381A T17877C C27297T T28144C G28878A G29742A TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_479859
 2020-03-12 2020-07-01
 Japan hCoV-19/Japan/PG-0133/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C8782T G16381A T17877C T28144C G28878A G29742A AATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29818-

EPI_ISL_479862
 2020-03-12 2020-07-01
 Japan hCoV-19/Japan/PG-0139/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- A3132G C4776T G11083T G11410A G14268A C21711T A23941G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479873
 2020-03-12 2020-07-01
 Japan hCoV-19/Japan/PG-0163/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C5512T G11083T C11752T C19170A G28857T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_479874
 2020-03-12 2020-07-01
 Japan hCoV-19/Japan/PG-0164/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C5512T G11083T C11752T C19170A G28857T TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_479875
 2020-03-12 2020-07-01
 Japan hCoV-19/Japan/PG-0165/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C11752T C17825T C19170A C24334T C29614T C29724T TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_479876
 2020-03-12 2020-07-01
 Japan hCoV-19/Japan/PG-0166/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C11752T C19170A C24334T C29614T TTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29820-

EPI_ISL_479877
 2020-03-12 2020-07-01
 Japan hCoV-19/Japan/PG-0167/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C5691T C11752T C19170A ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_479923
 2020-03-12 2020-07-01
 Japan hCoV-19/Japan/PG-0224/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACT1- A2160G T4402C G5062T C8782T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479999
 2020-03-12 2020-07-01
 Japan hCoV-19/Japan/PG-0324/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C241T C3037T G14140T C14408T A23403G A25167C C29769T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480103
 2020-03-12 2020-07-01
 Japan hCoV-19/Japan/PG-0437/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C8782T G16381A T17877C T19420C T28144C G28878A G29742A AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_480796 MT703963
 2020-03-12 2020-07-02
 United States SARS-CoV-2/human/USA/FL-BPHL-0145/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C8782T C17747T A17858G C18060T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481253
 2020-03-12 2020-07-03
 Germany hCoV-19/Germany/BW-RKI-N-0001/2020
 ATTAAAGGTTTAT1- C241T C3037T C11878T C14408T C15324T A23403G C23575T TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_482578
 2020-03-12 2020-07-04
 China hCoV-19/Hangzhou/HZCDC6445/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G C23575T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_482991
 2020-03-12 2020-07-06
 United States hCoV-19/USA/MN-MDH-1270/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C8782T T28144C G28878A G29742A AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_482992
 2020-03-12 2020-07-06
 United States hCoV-19/USA/MN-MDH-1271/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C1102T C8782T A17858G C18060T T28144C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_482993
 2020-03-12 2020-07-06
 United States hCoV-19/USA/MN-MDH-1272/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C3037T C14408T A23403G G25563T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_482996
 2020-03-12 2020-07-06
 United States hCoV-19/USA/MN-MDH-1275/2020
 ATTAAAGGTTTA1- C8782T C17010T A17858G C18060T T28144C GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_482997
 2020-03-12 2020-07-06
 United States hCoV-19/USA/MN-MDH-1276/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T C3037T C14408T A23403G G25563T TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_483718
 2020-03-12 2020-07-08
 Israel hCoV-19/Israel/n14264/2020
 C241T G625A C3037T G4412- G5200C TG5285- -6697T C6813T A8651C G9270C -10047T C12499T G12824- A12949T C13458T A13696T C14408T C18877T T18884C C19943A C20179T TG22483- A23403G T24948C G25563T

EPI_ISL_483720
 2020-03-12 2020-07-08
 Israel hCoV-19/Israel/n14265/2020
 C241T AA2514- C3037T T4546C C14408T C18877T G22487- A23403G G25563T

EPI_ISL_484191
 2020-03-12 2020-07-08
 United Kingdom hCoV-19/England/GSTT-265E368/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G C5170T C9223T G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485838 MT739444 MT913057
 2020-03-12 2020-07-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0537/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- A38R C8782T C17747T A17858G C18060T A24694T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_485840 MT739446 MT913059
 2020-03-12 2020-07-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0539/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C3037T C14408T TTA20339- A23403G G25563T

EPI_ISL_485842 MT739448 MT913061
 2020-03-12 2020-07-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0541/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C799T C1427T A8212G C8782T G8828A C17747T A17858G C18060T A24694T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_485844 MT739450 MT913063
 2020-03-12 2020-07-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0543/2020
 AT1- C3589T C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_485849 MT739455 MT913068
 2020-03-12 2020-07-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0548/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C3037T T11638C C14408T A23403G GGG28881AAC C29708T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_485850 MT739456 MT913069
 2020-03-12 2020-07-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0549/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T C1059T C3037T G10523C C12119T C14408T C18086A A23403G G25563T

EPI_ISL_485854 MT739460 MT913073
 2020-03-12 2020-07-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0553/2020
 ATT1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_485944
 2020-03-12 2020-07-10
 United States hCoV-19/USA/CT-UW-673/2020
 ATTAAAGGTTTAT1- TCT232CAC G237A C241T C3037T C14408T A23403G GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_485948
 2020-03-12 2020-07-10
 United States hCoV-19/USA/OR-UW-679/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAAC19- C37T C241T C1059T C3037T C14408T G14730A AA14732TG A17701T GC17706TA C21059T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_488466
 2020-03-12 2020-07-14
 United Kingdom hCoV-19/England/NORT-284178/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G256A C3037T C5310T G10097A C14408T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488737
 2020-03-12 2020-07-14
 United Kingdom hCoV-19/England/NORT-28414B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T T25202K G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488764
 2020-03-12 2020-07-14
 United Kingdom hCoV-19/England/NORT-281357/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488771
 2020-03-12 2020-07-14
 United Kingdom hCoV-19/England/NORT-281348/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G15380T C19934Y A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488806
 2020-03-12 2020-07-14
 United Kingdom hCoV-19/England/NORT-2813A2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T C18086T G26144T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492505
 2020-03-12 2020-07-20
 United Kingdom hCoV-19/England/BRIS-130B41/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T C17825T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492575
 2020-03-12 2020-07-20
 United Kingdom hCoV-19/England/BRIS-1309FC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- T6634Y C6696T C11001T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492672
 2020-03-12 2020-07-20
 United Kingdom hCoV-19/England/BRIS-130BBA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C13423T C14805T T17247C TGTAACTTTGAAGCAAGG25428- G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492694
 2020-03-12 2020-07-20
 United Kingdom hCoV-19/England/BRIS-1309ED/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C6696T T9642K C11001T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_494571
 2020-03-12 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1380/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T

EPI_ISL_494573
 2020-03-12 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1382/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C14408T A23403G

EPI_ISL_495118
 2020-03-12 2020-07-22
 United Kingdom hCoV-19/England/BRIS-1331A6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C14408T C14786T G20578T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498009
 2020-03-12 2020-07-26
 South Korea hCoV-19/Korea/KCDC2108/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- G5572T G11083T C14805T G26144T G27441T

EPI_ISL_498011
 2020-03-12 2020-07-26
 South Korea hCoV-19/Korea/KCDC2110/2020
 ATTA1- G5572T G11083T C14805T G26144T G27441T

EPI_ISL_498012
 2020-03-12 2020-07-26
 South Korea hCoV-19/Korea/KCDC2111/2020
 G5572T G11083T C14805T G26144T G27441T AAA29901-

EPI_ISL_498014
 2020-03-12 2020-07-26
 South Korea hCoV-19/Korea/KCDC2113/2020
 ATTA1- G5572T G11083T C14805T G26144T G27441T

EPI_ISL_498015
 2020-03-12 2020-07-26
 South Korea hCoV-19/Korea/KCDC2114/2020
 A1- G5572T G11083T G14055T C14805T G26144T

EPI_ISL_498016
 2020-03-12 2020-07-26
 South Korea hCoV-19/Korea/KCDC2115/2020
 AT1- G5572T G11083T C14805T G26144T G27441T

EPI_ISL_499816
 2020-03-12 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A4C46/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G431A ATG1605- C20270T C23114Y G26754A C28725T A29683T

EPI_ISL_500040
 2020-03-12 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A4763/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T G21624T A23403G GGG28881AAC

EPI_ISL_500055
 2020-03-12 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A4912/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T C3037T C14408T G15380T A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_500068
 2020-03-12 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A4AB5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A1321M C1567T G11083T C14805T T17247C G26144T

EPI_ISL_500073
 2020-03-12 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A4B2B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A1515G C9223T G11083T C14805T T17247C G26144T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_500083
 2020-03-12 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A4CDD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T G16075T T18689A C20031A C21614T A23403G C27046T GGG28881AAC

EPI_ISL_500084
 2020-03-12 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A4D16/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_500636
 2020-03-12 2020-07-29
 Australia hCoV-19/Australia/NSW2158/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C3037T C14408T A23403G CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_507049
 2020-03-12 2020-08-03
 United Kingdom hCoV-19/England/LOND-124D05D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- A2480G C2558T C7279T G11083T C14805T G26144T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_508765 MT834607
 2020-03-12 2020-08-04
 United States SARS-CoV-2/human/USA/FL-BPHL-0561/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_508873
 2020-03-12 2020-08-04
 France hCoV-19/France/ARA07910/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_508946
 2020-03-12 2020-08-04
 France hCoV-19/France/ARA08067/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTC1- C241T C1059T C3037T C14408T A23403G G25563T G28423A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_508947
 2020-03-12 2020-08-04
 France hCoV-19/France/ARA0814/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C241T T469C C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_510268
 2020-03-12 2020-08-06
 Spain hCoV-19/Spain/COV004025/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T T3331Y C12400T C14408T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_510320
 2020-03-12 2020-08-06
 Spain hCoV-19/Spain/COV005011/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A20268G A23403G CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_510323
 2020-03-12 2020-08-06
 Spain hCoV-19/Spain/COV005014/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C3037T C14408T A20268G A23403G CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_510325
 2020-03-12 2020-08-06
 Spain hCoV-19/Spain/COV005016/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C8782T C11651A C17470T C26088T T28144C CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_510424
 2020-03-12 2020-08-06
 Spain hCoV-19/Spain/COV006080/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C14408T G21786A A23403G G29009A AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_513415 MT886289
 2020-03-12 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0002/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGT1- C241T C1059T C3037T C14408T A23403G G25563T AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_515295
 2020-03-12 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0006/2020
 ATTA1- C8782T C17747T A17858G C18060T T28144C

EPI_ISL_515296
 2020-03-12 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0007/2020
 AT1- C241T C379A C1059T C3037T CC14407TT A23403G G25563T

EPI_ISL_516802
 2020-03-12 2020-08-24
 Singapore hCoV-19/Singapore/830/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6312A G11083T C13730T C23929T C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_523523
 2020-03-12 2020-08-26
 Netherlands hCoV-19/Netherlands/un-EMC-767/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C20148T A23403G G29422T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523524
 2020-03-12 2020-08-26
 Netherlands hCoV-19/Netherlands/un-EMC-768/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C20148T A23403G G29422T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523526
 2020-03-12 2020-08-26
 Netherlands hCoV-19/Netherlands/un-EMC-770/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C20148T A23403G G29422T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523937
 2020-03-12 2020-08-27
 Germany hCoV-19/Germany/NW-66/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A C9603T C26151T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_523948
 2020-03-12 2020-08-27
 Germany hCoV-19/Germany/NW-77/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9344T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_523966
 2020-03-12 2020-08-27
 Moldova hCoV-19/Moldova/ChVir7777/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_525603
 2020-03-12 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-13894-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_525604
 2020-03-12 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-13903-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T ATGGTCATGTTATGGTTG507- C1059T C3037T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_525605
 2020-03-12 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-13904-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_525606
 2020-03-12 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-13972-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T C26198T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_525607
 2020-03-12 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-13977-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C8782T C17747T A17858G C18060T A21944G T28144C TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_525608
 2020-03-12 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-13978-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T C18877T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_525609
 2020-03-12 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-14203-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C8782T C17747T A17858G C18060T T28144C TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_525610
 2020-03-12 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-14368-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G G25429T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_526937
 2020-03-12 2020-09-02
 Denmark hCoV-19/Faroe Islands/HFS-04/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1302T C3037T C6196T C14408T A23403G G25563T AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_528016
 2020-03-12 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42186690/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T C15324T A23403G AATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29849-

EPI_ISL_528020
 2020-03-12 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42187080/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528021
 2020-03-12 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42187348/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528022
 2020-03-12 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42187354/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T G22487C A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528024
 2020-03-12 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42187670/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G G24095T TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_528025
 2020-03-12 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42187831/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25563T TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_528027
 2020-03-12 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42187833/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25563T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_528028
 2020-03-12 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42187926/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528029
 2020-03-12 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42187936/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T G17722T A23403G AATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29849-

EPI_ISL_528030
 2020-03-12 2020-09-06
 Switzerland hCoV-19/Switzerland/AG-UHB-42187967/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G G28881T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528031
 2020-03-12 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42188011/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T G9190T C14408T G15380T A23403G G25563T TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_528032
 2020-03-12 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42188088/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G T26286C AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528033
 2020-03-12 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42188149/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T C17285T A23403G ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_528034
 2020-03-12 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42188447/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- A187G C241T C3037T C14408T A23403G G29050A GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_528037
 2020-03-12 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42188679/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_529961
 2020-03-12 2020-09-10
 Indonesia hCoV-19/Indonesia/JI-ITD-136N/2020
 ATTAAAGGTTT1- A20294G

EPI_ISL_534731
 2020-03-12 2020-09-14
 United States hCoV-19/USA/NY-WC-13741-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- T490A C3177T C8782T T18736C G19684T C24034T T26729C C27635T G28077C T28144C A29700G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_535731
 2020-03-12 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00215022/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1063T C3037T C14408T A23403G C28651T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535732
 2020-03-12 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00215586/2020
 ATTAAAGGTTTATACCT1- C241T C1059T C3037T C5284T C14408T A23403G G25563T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_535735
 2020-03-12 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00215711/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G C25433T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535736
 2020-03-12 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00215713/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C11916T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535737
 2020-03-12 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00215798/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535738
 2020-03-12 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00215812/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T AAGTCATTT686- C2295T C3037T C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535739
 2020-03-12 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00215817/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C14408T C14786T C20078A G20578T A23403G A23572G C23575T G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535740
 2020-03-12 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00215858/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C1616T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535741
 2020-03-12 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00215879/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G G24197T G25563T C26735T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535742
 2020-03-12 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00215977/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535743
 2020-03-12 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00215981/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535744
 2020-03-12 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00216190/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8208T G9267A T9667C C14408T A23403G G25947T G28361A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535745
 2020-03-12 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00216197/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T A2831C C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535749
 2020-03-12 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00216478/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535751
 2020-03-12 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00216532/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C11514T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535764
 2020-03-12 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00217559/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8208T G9267A T9667C C14408T A23403G G25947T G28361A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536440
 2020-03-12 2020-09-16
 Singapore hCoV-19/Singapore/899/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C6312A G11083T C13730T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_537577
 2020-03-12 2020-09-16
 United States hCoV-19/USA/CA-UCLA-48/2020
 A1- C241T C3037T C14408T A23403G GGG28881AAC GTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29828-

EPI_ISL_537584
 2020-03-12 2020-09-16
 United States hCoV-19/USA/CA-UCLA-59/2020
 ATTAAAGGTTTATACC1- C241T AAGTCATTT686- C2416T C3037T C14408T A23403G G25563T G27915A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_537602
 2020-03-12 2020-09-16
 United States hCoV-19/USA/CA-UCLA-81/2020
 ATTAAAGGTTTATAC1- G1397A G11083T T28688C G28851T G29742T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_537836
 2020-03-12 2020-09-16
 Spain hCoV-19/Spain/RI-CSIC-98002316/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T T13006C C14408T A23403G G25563T C25688T C29870A

EPI_ISL_537837
 2020-03-12 2020-09-16
 Spain hCoV-19/Spain/RI-CSIC-98002317/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A20268G A23403G G29734C C29870A

EPI_ISL_538842
 2020-03-12 2020-09-17
 United Kingdom hCoV-19/England/LEED-2AA14F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T C28313Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538933
 2020-03-12 2020-09-17
 United Kingdom hCoV-19/England/LEED-2AA130/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C23575T G23587C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539144
 2020-03-12 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8CD7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G24077T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539499
 2020-03-12 2020-09-18
 Spain hCoV-19/Spain/AN-ISCIII-202657/2020
 C241T AC538TA G4444T AA4452TG CA4456TT A4892G G5286A A5511T T5514G C8782T T9320A T9477A G10565A C12876T C14805T T24141C G24164A T24371A T25735A G25979T A25985G A26030G A26583G A26662C T26731C C27641T T28144C C28657T C28863T

EPI_ISL_539520
 2020-03-12 2020-09-18
 Spain hCoV-19/Spain/CE-ISCIII-202293/2020
 C1342T A1830G G11083T C14805T TGT22643ACA T22655C TCT22658CTG G26144T

EPI_ISL_540434 MW021514
 2020-03-12 2020-09-21
 United States SARS-CoV-2/human/USA/TN-CDC-7936/2020
 C241T C1059T C3037T C14408T T18513A A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_541370
 2020-03-12 2020-09-22
 Brazil hCoV-19/Brazil/SC-770/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T A5706G C14408T A23403G T27299C GGG28881AAC T29148C GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_541375
 2020-03-12 2020-09-22
 Brazil hCoV-19/Brazil/SE-6535/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C3037T C14408T A20268G A23403G A25018T GAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29781-

EPI_ISL_547453
 2020-03-12 2020-09-24
 Netherlands hCoV-19/Curacao/CW-RIVM-10100/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C T1606C C16762T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547462
 2020-03-12 2020-09-24
 Netherlands hCoV-19/Netherlands/GE-RIVM-10098/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C T1606C A6350C C17410T G28028T A29735G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568918
 2020-03-12 2020-10-02
 France hCoV-19/France/IHU-0659/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C4002T C6861T G10097A C13536T A14240G C14408T A23403G C23731T C28391T GGG28881AAC G29692T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569251
 2020-03-12 2020-10-02
 France hCoV-19/France/IHU-0022/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1059T C3037T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569326
 2020-03-12 2020-10-02
 France hCoV-19/France/IHU-0130/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1059T C3037T G11083T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

MT452574
 2020-03-12 2020-05-10
 United States SAR-CoV-2/human/USA/NY-QDX-00000001/2020
 ATTAA1- C241T C1059T C3037T C14408T A23403G G25563T

MT459855
 2020-03-12 2020-05-11
 Greece SARS-CoV-2/human/GRC/139_32716/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

MT459857
 2020-03-12 2020-05-11
 Greece SARS-CoV-2/human/GRC/141_32983/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T C16073T A23403G GGG28881AAC C28887T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

MT459865
 2020-03-12 2020-05-11
 Greece SARS-CoV-2/human/GRC/150_32764/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C2508T G9190T G11083T C14805T G15919T T17247C G26144T G26172A ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

MT670015
 2020-03-12 2020-06-25
 Chile SARS-CoV-2/human/CHL/2020-25343/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT810479
 2020-03-12 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1380-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- T833C C1059T C3037T C14408T A23403G G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810481
 2020-03-12 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1382-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A23403G CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810565
 2020-03-12 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0436-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- G7798T C8782T C17747T A17858G C18060T C20148T T28144C CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811175
 2020-03-12 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0118-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C884T G1397A G8653T G11083T C20628T A25980C T28688C CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT827816
 2020-03-12 2020-08-02
 United States SARS-CoV-2/human/USA/UNKNOWN-UW-667/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACG1- C8782T C17747T A17858G C18060T T23010C T28144C

MT827820
 2020-03-12 2020-08-02
 United States SARS-CoV-2/human/USA/UNKNOWN-UW-686/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C2061T C8782T C10641T C17747T A17858G C18060T T23010C T28144C

MT827822
 2020-03-12 2020-08-02
 United States SARS-CoV-2/human/USA/UNKNOWN-UW-672/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C2061T C8782T C17747T A17858G C18060T T23010C T28144C

MT827825
 2020-03-12 2020-08-02
 United States SARS-CoV-2/human/USA/UNKNOWN-UW-666/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- TCAC95ATGA C8782T C17747T A17858G C18060T T23010C G25471T T28144C

MT827836
 2020-03-12 2020-08-02
 United States SARS-CoV-2/human/USA/UNKNOWN-UW-659/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCT1- C241T C1059T C3037T C14408T A23403G G25563T

MT827839
 2020-03-12 2020-08-02
 United States SARS-CoV-2/human/USA/UNKNOWN-UW-629/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAG1- C2061T C8782T C17747T A17858G C18060T G21305A T23010C T28144C TG29867AA

NMDC60013261
 2020-03-12 2020-06-01
 China hCoV-19/Guangzhou/ID006/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6312A G11083T C13730T C23929T C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_415486 LR878100
 2020-03-13 2020-03-17
 Netherlands hCoV-19/Netherlands/NA_29/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- G11083T T13078C G14653T C14805T T17247C G26144T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415487 LR878094
 2020-03-13 2020-03-17
 Netherlands hCoV-19/Netherlands/NA_30/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C1059T C3037T C14408T A23403G T25414C G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415488 LR878108
 2020-03-13 2020-03-17
 Netherlands hCoV-19/Netherlands/NA_31/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T C14408T A23403G A24862G G27870T G29477T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415489 LR878099
 2020-03-13 2020-03-17
 Netherlands hCoV-19/Netherlands/NA_32/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- T514C ATG1605- GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415539
 2020-03-13 2020-03-17
 United States hCoV-19/USA/UT-01/2020
 G11083T C18060T C26326T

EPI_ISL_415541
 2020-03-13 2020-03-17
 United States hCoV-19/USA/UT-03/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_415542
 2020-03-13 2020-03-17
 United States hCoV-19/USA/UT-04/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_415543
 2020-03-13 2020-03-17
 United States hCoV-19/USA/UT-05/2020
 C241T C379A C1059T C3037T C14408T A23403G G25563T

EPI_ISL_415544
 2020-03-13 2020-03-17
 United States hCoV-19/USA/UT-06/2020
 C241T C379A C1059T C3037T C14408T A23403G G25563T

EPI_ISL_416482
 2020-03-13 2020-03-22
 Georgia hCoV-19/Georgia/Tb/2020
 ATT1- C241T C3037T C14408T A23403G G24077T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_416690 MT252728
 2020-03-13 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW152/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C8782T C17747T A17858G C18060T T28144C AAA29901-

EPI_ISL_416691 MT252729
 2020-03-13 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW153/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C936T C1059T C3037T C14408T A23403G G25563T G29553A AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_416694 MT252727
 2020-03-13 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW156/2020
 ATTAAAG1- C8782T AGG13512TTA C17747T A17858G C18060T G20128A T27384C T28144C C29518T AAAA29900R

EPI_ISL_416696 MT252731
 2020-03-13 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW158/2020
 ATTAAAGGTTTA1- C2676T C8782T A22606T T28144C G28878A G29742A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416697 MT252732
 2020-03-13 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW159/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAA1- C241T C3037T C14408T A23403G GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862A

EPI_ISL_416698 MT252733
 2020-03-13 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW160/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAA1- C241T C1059T C3037T C14408T A23403G G25563T G29553A -29904ANANAAANANG

EPI_ISL_416699 MT252722
 2020-03-13 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW161/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATC1- C241T C1059T C3037T C14408T A23403G G25563T G29553A TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_416700 MT252723
 2020-03-13 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW162/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C2469T C8782T C17747T A17858G C18060T C18877T T28144C TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_416701 MT252721
 2020-03-13 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW163/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCAC1- TT6963AC C6968A C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAA29892-

EPI_ISL_416703 MT252724
 2020-03-13 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW165/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C8782T C17747T A17858G C18060T G20991A T28144C TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_416705 MT252699
 2020-03-13 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW167/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAA1- C8782T C17747T A17858G C18060T T28144C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_416706 MT252700
 2020-03-13 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW168/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAA1- C6312A G11083T C13730T C23929T C28311T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_416709 MT252707
 2020-03-13 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW171/2020
 ATTAAAGGTTTATAC1- C8782T C17747T A17858G C18060T G21255C G25273C T28144C A29866C GA29868BT AAA29901-

EPI_ISL_416710 MT252708
 2020-03-13 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW172/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAA1- C1238T C3593T C4683T T4779C C8782T C17747T A17858G C18060T A27200G T28144C T28924C AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_416716 MT252697
 2020-03-13 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW178/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_416720
 2020-03-13 2020-03-23
 United States hCoV-19/USA/WA-UW182/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCA1- -8652TGTTTAAACATACTGACTTTTCAAGTGAAATCATAGGATACAAGGCTATTGATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN C8782T T10763C -13066ATCTTTCTGTGCTTTTGCTGTAGATGCTGCTAAAGCTTACAAAGATTATCTAGCTAGTGGTGGACAACCAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN G13126T C17747T A17858G C18060T T27384C T28144C A29865C G29868C -29904ANANANANANAG

EPI_ISL_416721 MT252698
 2020-03-13 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW183/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_416724 MT252705
 2020-03-13 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW186/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAA1- C241T C1059T C3037T C14408T A23403G G25563T G29553A AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_416725 MT252706
 2020-03-13 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW187/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTG1- C241T C1059T C3037T C14408T A23403G G25563T G29553A AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_416726 MT252702
 2020-03-13 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW188/2020
 T2- GG7AA A460G A7079G C8782T C17747T A17858G C18060T T28144C -29904GAVNNAAAA

EPI_ISL_416727 MT252703
 2020-03-13 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW189/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAA1- C8782T T11320C C17747T A17858G C18060T T28144C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_416728 MT252704
 2020-03-13 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW190/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C8782T C17747T A17858G C18060T T28144C A29700G AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_416729 MT252696
 2020-03-13 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW191/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_417016
 2020-03-13 2020-03-23
 Belgium hCoV-19/Belgium/ULG-6503/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4255T C14408T A23403G A26530G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417315
 2020-03-13 2020-03-25
 United Kingdom hCoV-19/England/20118044606/2020
 A2480G C2558T A6474G A9634T G11083T C14805T G26144T

EPI_ISL_417330 MT419851
 2020-03-13 2020-03-25
 United States SARS-CoV-2/human/USA/CA-CDPH-UC26/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_417341 MT246449
 2020-03-13 2020-03-25
 United States SARS-CoV-2/human/USA/WA-UW192/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAA1- C241T C1059T C3037T C14408T A23403G G25563T G29553A A29903-

EPI_ISL_417342 MT246450
 2020-03-13 2020-03-25
 United States SARS-CoV-2/human/USA/WA-UW193/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C1059T C3037T C14408T A23403G G25563T G29553A

EPI_ISL_417343 MT246451
 2020-03-13 2020-03-25
 United States SARS-CoV-2/human/USA/WA-UW194/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C3037T C14408T G16075T T18689A C20031A A23403G C27046T GGG28881AAC -29904AAANANAAA

EPI_ISL_417344 MT246452
 2020-03-13 2020-03-25
 United States SARS-CoV-2/human/USA/WA-UW195/2020
 ATTAAAG1- C8782T C17747T A17858G C18060T A27525G T28144C AAAAAAAA29896-

EPI_ISL_417345 MT246453
 2020-03-13 2020-03-25
 United States SARS-CoV-2/human/USA/WA-UW196/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAA1- C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T AAAAAA29898-

EPI_ISL_417353 MT246461
 2020-03-13 2020-03-25
 United States SARS-CoV-2/human/USA/WA-UW204/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAAC19- C37T C8782T C17747T A17858G C18060T C21575T G22988A T28144C -29904TANATA

EPI_ISL_417354 MT246462
 2020-03-13 2020-03-25
 United States SARS-CoV-2/human/USA/WA-UW205/2020
 T2H G8768A C8782T C17747T A17858G C18060T A27525G T28144C

EPI_ISL_417356 MT246464
 2020-03-13 2020-03-25
 United States SARS-CoV-2/human/USA/WA-UW207/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCT1- C8782T C17747T A17858G C18060T C27276T T27384C T28144C CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_417358 MT246466
 2020-03-13 2020-03-25
 United States SARS-CoV-2/human/USA/WA-UW209/2020
 ATTAAA1- AACC34HTTH C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417362 MT246470
 2020-03-13 2020-03-25
 United States SARS-CoV-2/human/USA/WA-UW213/2020
 ATTAAAGGTTTATACCTT1- AACC34HTTH C241T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_417367 MT246475
 2020-03-13 2020-03-25
 United States SARS-CoV-2/human/USA/WA-UW218/2020
 ATTAAAGGTTTATACCTTCC1- C8782T C9180T G11083T C16887T C17747T A17858G C18060T T28144C C29774T AAAAAA29898-

EPI_ISL_417368 MT246476
 2020-03-13 2020-03-25
 United States SARS-CoV-2/human/USA/WA-UW219/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C5052T C8782T C17474T C17747T A17858G C18060T G27226T T28144C A29903-

EPI_ISL_417371 MT246479
 2020-03-13 2020-03-25
 United States SARS-CoV-2/human/USA/WA-UW222/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAA1- T221C C8782T C17747T A17858G C18060T T28144C G29862A A29903-

EPI_ISL_417372 MT246480
 2020-03-13 2020-03-25
 United States SARS-CoV-2/human/USA/WA-UW223/2020
 A1- C241T C3037T C14408T C18877T A23403G G25563T -29904AA

EPI_ISL_417373 MT246481
 2020-03-13 2020-03-25
 United States SARS-CoV-2/human/USA/WA-UW224/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- AACC34HTTH C241T C1059T C3037T C14408T A23403G G25563T -29904AA

EPI_ISL_417401
 2020-03-13 2020-03-25
 Australia hCoV-19/Australia/NSW45/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C6312A G11083T C13730T C23929T C28311T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_417402
 2020-03-13 2020-03-25
 Australia hCoV-19/Australia/NSW47/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A20268G A23403G G25483A CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_417456 MT251980
 2020-03-13 2020-03-26
 United States SARS-CoV-2/human/USA/WA-UW242/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCT1- C140T G4642A TAG4879- C8782T C12213T C17747T A17858G C18060T C27807T T28144C G29862D AAAA29900-

EPI_ISL_417463 MT582482
 2020-03-13 2020-03-26
 Germany SARS-CoV-2/human/DEU/NRW-18/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_417473 MT911542
 2020-03-13 2020-03-26
 United States SARS-CoV-2/human/USA/MN36-MDH36/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21191M A23403G A25876R CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_417478 MT911546
 2020-03-13 2020-03-26
 United States SARS-CoV-2/human/USA/MN42-MDH42/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G C9223Y C14805T T17247Y G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417492 MT911549
 2020-03-13 2020-03-26
 United States SARS-CoV-2/human/USA/MN45-MDH45/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C6078Y G13489R C14408T A23403G G25563T CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

EPI_ISL_417493 MT911550
 2020-03-13 2020-03-26
 United States SARS-CoV-2/human/USA/MN46-MDH46/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13019T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417494 MT911551
 2020-03-13 2020-03-26
 United States SARS-CoV-2/human/USA/MN47-MDH47/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A23403G -29820T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417495 MT911552
 2020-03-13 2020-03-26
 United States SARS-CoV-2/human/USA/MN48-MDH48/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839T

EPI_ISL_417496 MT911553
 2020-03-13 2020-03-26
 United States SARS-CoV-2/human/USA/MN51-MDH51/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21191M A23403G A25876R -29716A CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_417497 MT911554
 2020-03-13 2020-03-26
 United States SARS-CoV-2/human/USA/MN52-MDH52/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3738Y C14408T A23403G G25563T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417498
 2020-03-13 2020-03-26
 United States hCoV-19/USA/MN53-MDH53/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T A4912C C14805T C17010A G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417499 MT911555
 2020-03-13 2020-03-26
 United States SARS-CoV-2/human/USA/MN55-MDH55/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C11916T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417514
 2020-03-13 2020-03-27
 United States hCoV-19/USA/WI-UW-22/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T G16381A T17877C C20316T G25500T T28144C G28878A G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417522 MT374105
 2020-03-13 2020-03-27
 Taiwan SARS-CoV-2/human/TWN/CGMH-CGU-09/2020
 AT1- G11083T C14805T T17247C G26144T A29903-

EPI_ISL_417523 MT374106
 2020-03-13 2020-03-27
 Taiwan SARS-CoV-2/human/TWN/CGMH-CGU-10/2020
 AT1- C228T G1397A G9479T A9514G G11083T A19818G G26720C G28202T T28688C T28835C G29742T AA29902-

EPI_ISL_417694
 2020-03-13 2020-03-27
 Iceland hCoV-19/Iceland/3/2020
 C241T C3037T C14408T G18214T A23403G A26530G

EPI_ISL_417711
 2020-03-13 2020-03-27
 Iceland hCoV-19/Iceland/150/2020
 A187G C241T C3037T C14408T C16017T T16515C A23403G

EPI_ISL_417739
 2020-03-13 2020-03-27
 Iceland hCoV-19/Iceland/5/2020
 C241T C3037T A10323G C14408T A20268G A23403G

EPI_ISL_417741
 2020-03-13 2020-03-27
 Iceland hCoV-19/Iceland/145/2020
 C241T C3037T A10323G C14408T A20268G A23403G

EPI_ISL_417744
 2020-03-13 2020-03-27
 Iceland hCoV-19/Iceland/137/2020
 C241T C799T C14408T A20268G A23403G

EPI_ISL_417745
 2020-03-13 2020-03-27
 Iceland hCoV-19/Iceland/152/2020
 C241T C3037T A10323G C14408T A20268G A23403G

EPI_ISL_417755
 2020-03-13 2020-03-27
 Iceland hCoV-19/Iceland/169/2020
 C241T A1331G C3037T A10323G C14408T A20268G A23403G

EPI_ISL_417759
 2020-03-13 2020-03-27
 Iceland hCoV-19/Iceland/166/2020
 G1440A G2891A C7011T G25593C

EPI_ISL_417793
 2020-03-13 2020-03-27
 Iceland hCoV-19/Iceland/142/2020
 G1440A G2891A C27661T

EPI_ISL_417795
 2020-03-13 2020-03-27
 Iceland hCoV-19/Iceland/144/2020
 C241T C3037T C14408T A23403G C24054T A25958G C27046T GGG28881AAC

EPI_ISL_417796
 2020-03-13 2020-03-27
 Iceland hCoV-19/Iceland/146/2020
 C241T C3037T C14408T G16864A A23403G GGG28881AAC

EPI_ISL_417797
 2020-03-13 2020-03-27
 Iceland hCoV-19/Iceland/147/2020
 C186T C241T AAGTCATTT686- C1059T C3037T G11552T C14408T A23403G T24907C G25563T

EPI_ISL_417798
 2020-03-13 2020-03-27
 Iceland hCoV-19/Iceland/148/2020
 C241T C799T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_417799
 2020-03-13 2020-03-27
 Iceland hCoV-19/Iceland/149/2020
 C151T C241T C3037T C14408T A23403G A26530G

EPI_ISL_417801
 2020-03-13 2020-03-27
 Iceland hCoV-19/Iceland/151/2020
 T3034C G11083T C14805T C16054T T17247C T17859C G26144T G29751C

EPI_ISL_417802
 2020-03-13 2020-03-27
 Iceland hCoV-19/Iceland/153/2020
 C241T C3037T C14408T A23403G C24054T A25958G C27046T GGG28881AAC

EPI_ISL_417803
 2020-03-13 2020-03-27
 Iceland hCoV-19/Iceland/156/2020
 A187G C241T C3037T C14408T C15857T A23403G

EPI_ISL_417804
 2020-03-13 2020-03-27
 Iceland hCoV-19/Iceland/157/2020
 C241T T658C C3037T C14408T A23403G A24862G C28629T

EPI_ISL_417805
 2020-03-13 2020-03-27
 Iceland hCoV-19/Iceland/158/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_417806
 2020-03-13 2020-03-27
 Iceland hCoV-19/Iceland/159/2020
 C241T C1059T C3037T T13006C C14408T A23403G G25563T C25688T

EPI_ISL_417810
 2020-03-13 2020-03-27
 Iceland hCoV-19/Iceland/168/2020
 C28T C241T C3037T A8203G A10323G C14408T A20268G A23403G G24193T

EPI_ISL_417854
 2020-03-13 2020-03-27
 Iceland hCoV-19/Iceland/6/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_417964 MT334533
 2020-03-13 2020-03-27
 United States SARS-CoV-2/human/USA/UT-00014/2020
 AT1-C C8782T C17747T A17858G C18060T T28144C G28727T

EPI_ISL_418006
 2020-03-13 2020-03-28
 Portugal hCoV-19/Portugal/PT0021/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T C18877T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_418007
 2020-03-13 2020-03-28
 Portugal hCoV-19/Portugal/PT0022/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G G25273T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_418008
 2020-03-13 2020-03-28
 Portugal hCoV-19/Portugal/PT0023/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T G4444T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_418028 MT259235
 2020-03-13 2020-03-28
 United States SARS-CoV-2/human/USA/WA-UW243/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACT1- C241T C1059T C3037T A13748G C14408T A23403G G25563T C27964T AAAA29900-

EPI_ISL_418036 MT259243
 2020-03-13 2020-03-28
 United States SARS-CoV-2/human/USA/WA-UW251/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCA1- C241T C1059T C3037T C10319T C14408T A23403G G25563T C27964T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_418039 MT259246
 2020-03-13 2020-03-28
 United States SARS-CoV-2/human/USA/WA-UW254/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- A35W T150C T153G C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_418042 MT259249
 2020-03-13 2020-03-28
 United States SARS-CoV-2/human/USA/WA-UW257/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAA1- C241T C1059T C1191T C3037T C14408T G21724C A23403G G25563T C27964T

EPI_ISL_418049 MT259256
 2020-03-13 2020-03-28
 United States SARS-CoV-2/human/USA/WA-UW264/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C241T C1059T C3037T C14408T A23403G G25563T C27964T C28099T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_418051 MT259258
 2020-03-13 2020-03-28
 United States SARS-CoV-2/human/USA/MN-UW266/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAA1- C1059T C3037T C14408T A23403G G25563T C27964T C28099T T29867A -29904AAAAAAAAAAAAA

EPI_ISL_418056 MT259263
 2020-03-13 2020-03-28
 United States SARS-CoV-2/human/USA/WA-UW271/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C241T C3037T C14408T A23403G GGG28881AAC -29904VAARAA

EPI_ISL_418057 MT259264
 2020-03-13 2020-03-28
 United States SARS-CoV-2/human/USA/WA-UW272/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C241T C1059T C3037T C14408T A23403G G25563T GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_418059 MT259266
 2020-03-13 2020-03-28
 United States SARS-CoV-2/human/USA/WA-UW274/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C8782T C17747T A17858G C18060T T28144C AA29902-

EPI_ISL_418061 MT259268
 2020-03-13 2020-03-28
 United States SARS-CoV-2/human/USA/WA-UW276/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACT1- C8782T C17747T A17858G C18060T T28144C A29869T -29904AAA

EPI_ISL_418110
 2020-03-13 2020-03-28
 United Kingdom hCoV-19/Wales/PHWC-23D6A/2020
 ATTA1- G1440A G2891A G28851T

EPI_ISL_418216
 2020-03-13 2020-03-29
 Senegal hCoV-19/Senegal/136/2020
 C8782T T9477A C14805T A22151G G25979T T28144C C28657T C28863T

EPI_ISL_418230
 2020-03-13 2020-03-29
 France hCoV-19/France/IDF2420/2020
 ATTAAAGGTTTATACCTTC1- C241T C3037T C14408T C15324T A23403G AGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29799-

EPI_ISL_418364
 2020-03-13 2020-03-13
 Canada hCoV-19/Canada/ON_PHL6922/2020
 A1- C241T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418377
 2020-03-13 2020-03-13
 Canada hCoV-19/Canada/ON_PHL1898/2020
 A1- C190G C241T C3037T C14408T A23403G G25563T GTTCTA28090- AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418379
 2020-03-13 2020-03-13
 Canada hCoV-19/Canada/ON_PHL7512/2020
 A1- C854T TGT1576- ATG1605- G3287T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418380
 2020-03-13 2020
 Canada hCoV-19/Canada/ON_PHL3476/2020
 A1- T184- T8767C C8782T T10771C C17747T A17858G C18060T A25031T G25166A T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418386
 2020-03-13 2020-03-13
 Finland hCoV-19/Finland/13M26/2020
 C241T C1059T C3037T C14408T A23403G G25563T GTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29810-

EPI_ISL_418390
 2020-03-13 2020-03-13
 Finland hCoV-19/Finland/13M33/2020
 C241T C2416T C3037T A10874G C14408T G19559T A23403G G23611A G25563T GTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29810-

EPI_ISL_418391
 2020-03-13 2020-03-13
 Finland hCoV-19/Finland/13M57/2020
 C241T C3037T C14408T A20268G A23403G C28854T AAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29813-

EPI_ISL_418392
 2020-03-13 2020-03-13
 Finland hCoV-19/Finland/13M58/2020
 C241T C3037T C14408T C18877T A23403G G24197T G25563T C26735T AAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29813-

EPI_ISL_418395
 2020-03-13 2020-03-13
 Finland hCoV-19/Finland/13M65/2020
 C241T C3037T C14408T C18877T A23403G G24197T G25563T C26735T GTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29810-

EPI_ISL_418671
 2020-03-13 2020-03-30
 United Kingdom hCoV-19/England/20119026102/2020
 C241T C3037T C14408T G14580T A23403G

EPI_ISL_418734
 2020-03-13 2020-03-30
 United Kingdom hCoV-19/England/20124097102/2020
 G11083T C14805T C15480T C23707T A25056G G26144T

EPI_ISL_418771 MT262896
 2020-03-13 2020-03-30
 United States SARS-CoV-2/human/USA/WA-NH2/2020
 C8782T T11320C C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418772 MT262897
 2020-03-13 2020-03-30
 United States SARS-CoV-2/human/USA/WA-NH3/2020
 C8782T T11320C C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418773 MT262898
 2020-03-13 2020-03-30
 United States SARS-CoV-2/human/USA/WA-NH4/2020
 C8782T T11320C C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418774 MT262899
 2020-03-13 2020-03-30
 United States SARS-CoV-2/human/USA/WA-NH5/2020
 C8782T T13845C C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418775 MT262900
 2020-03-13 2020-03-30
 United States SARS-CoV-2/human/USA/WA-NH6/2020
 C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418776 MT262901
 2020-03-13 2020-03-30
 United States SARS-CoV-2/human/USA/WA-NH7/2020
 C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418777 MT262902
 2020-03-13 2020-03-30
 United States SARS-CoV-2/human/USA/WA-NH8/2020
 C8782T T11320C C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418778 MT262903
 2020-03-13 2020-03-30
 United States SARS-CoV-2/human/USA/WA-NH9/2020
 C8782T T11320C C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418779 MT262904
 2020-03-13 2020-03-30
 United States SARS-CoV-2/human/USA/WA-NH10/2020
 C8782T T11320C C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418780 MT262905
 2020-03-13 2020-03-30
 United States SARS-CoV-2/human/USA/WA-NH11/2020
 C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418781 MT262906
 2020-03-13 2020-03-30
 United States SARS-CoV-2/human/USA/WA-NH12/2020
 C8782T T11320C C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418782 MT262915
 2020-03-13 2020-03-30
 United States SARS-CoV-2/human/USA/WA-NH13/2020
 C8782T C17747T A17858G C18060T G23120T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418783 MT262907
 2020-03-13 2020-03-30
 United States SARS-CoV-2/human/USA/WA-NH14/2020
 C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418784 MT262908
 2020-03-13 2020-03-30
 United States SARS-CoV-2/human/USA/WA-NH17/2020
 C8782T T11320C C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418785 MT262909
 2020-03-13 2020-03-30
 United States SARS-CoV-2/human/USA/WA-NH18/2020
 C8782T T11320C C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418786 MT262910
 2020-03-13 2020-03-30
 United States SARS-CoV-2/human/USA/WA-NH19/2020
 C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418787 MT262911
 2020-03-13 2020-03-30
 United States SARS-CoV-2/human/USA/WA-NH20/2020
 C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418788 MT262912
 2020-03-13 2020-03-30
 United States SARS-CoV-2/human/USA/WA-NH21/2020
 C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418789 MT262913
 2020-03-13 2020-03-30
 United States SARS-CoV-2/human/USA/WA-NH22/2020
 C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418790 MT262916
 2020-03-13 2020-03-30
 United States SARS-CoV-2/human/USA/WA-NH23/2020
 C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418791 MT262914
 2020-03-13 2020-03-30
 United States SARS-CoV-2/human/USA/WA-NH24/2020
 C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418813
 2020-03-13 2020-03-31
 Canada hCoV-19/Canada/MB_10/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G19677T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_418814
 2020-03-13 2020-03-31
 Canada hCoV-19/Canada/NS_13/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A6400G C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_418817
 2020-03-13 2020-03-31
 Canada hCoV-19/Canada/BC_0554880/2020
 C7200T C8782T C17747T A17858G C18060T T28144C

EPI_ISL_418849
 2020-03-13 2020-03-31
 Canada hCoV-19/Canada/BC_8486790/2020
 A187G C241T C3037T C14408T A23403G

EPI_ISL_418851
 2020-03-13 2020-03-31
 Canada hCoV-19/Canada/BC_8622445/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_418856
 2020-03-13 2020-03-31
 Canada hCoV-19/Canada/BC_9345042/2020
 A187G C241T C1616T C3037T C14408T A23403G

EPI_ISL_418857
 2020-03-13 2020-03-31
 Canada hCoV-19/Canada/BC_9345715/2020
 A187G C241T C3037T C14408T A23403G

EPI_ISL_418858
 2020-03-13 2020-03-31
 Canada hCoV-19/Canada/BC_9446031/2020
 A2480G C2558T A4912C G11083T C14805T C17010A C21575T G26144T

EPI_ISL_418866 MT263381
 2020-03-13 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW298/2020
 ATTAAAG1- AACC34WTTM C8782T C17747T A17858G C18060T T28144C -29904AAANANAAANADA

EPI_ISL_418867 MT263382
 2020-03-13 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW299/2020
 ATTAAAGGTTTAT1- AACC34TTTA C8782T C17747T A17858G C18060T T28144C A29866T GA29868BT -29904AHATANANA

EPI_ISL_418868 MT263383
 2020-03-13 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW300/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGC1- G219T C8782T C17747T A17858G C18060T T28144C TG29867AA

EPI_ISL_418882 MT263396
 2020-03-13 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW315/2020
 AT1TG A4H C8782T C17747T A17858G C18060T T28144C A29880C

EPI_ISL_418893 MT263406
 2020-03-13 2020-03-30
 United States SARS-CoV-2/human/USA/MN-UW326/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C1059T C3037T C10319T C14408T C15720T A23403G G25563T C27964T GA29868CT -29904AAAAAAAA

EPI_ISL_418901 MT263414
 2020-03-13 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW334/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGA1- C2110T C8782T C17747T A17858G C18060T C21575T T28144C

EPI_ISL_418902 MT263415
 2020-03-13 2020-03-30
 United States SARS-CoV-2/human/USA/MN-UW335/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAA1- C241T C673T C1059T C3037T C4683T C14408T A23403G G25563T C27964T -29878AAACAAAAAAC

EPI_ISL_418915 MT263428
 2020-03-13 2020-03-30
 United States SARS-CoV-2/human/USA/IL-UW348/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACG1- C241T C1059T C3037T C5183T C14408T A23403G G25563T G25691T A29903-

EPI_ISL_418916 MT263429
 2020-03-13 2020-03-30
 United States SARS-CoV-2/human/USA/IL-UW349/2020
 ATTAAAGGTTTAT1- AACC34HTTA G1440A G2891A C28854T A29903-

EPI_ISL_418918 MT263431
 2020-03-13 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW351/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C11916T C14408T A23403G G25563T A29903-

EPI_ISL_418919 MT263432
 2020-03-13 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW352/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATC1- A55C C241T C1059T C3037T C14408T A23403G G25563T -29904AAANAAANAA

EPI_ISL_418920 MT263433
 2020-03-13 2020-03-30
 United States SARS-CoV-2/human/USA/IL-UW353/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- AAC34HTT C241T C2416T C3037T C14408T A23403G G25563T G26233T AAAAAAAAAAAAAAAAAAA29885-

EPI_ISL_419310 LC547532
 2020-03-13 2020-04-02
 Japan hCoV-19/Japan/P5-2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C3037T C14408T A23403G GGG28881AAC TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_419311 LC547533
 2020-03-13 2020-04-02
 Japan hCoV-19/Japan/P5-3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C241T C3037T C14408T A23403G GGG28881AAC G29229A AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_419392 MT911563
 2020-03-13 2020-04-02
 United States SARS-CoV-2/human/USA/MN64-MDH64/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17747T A17858G C18060T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_419582
 2020-03-13 2020-04-02
 Luxembourg hCoV-19/Luxembourg/LNS3156434/2020
 A187G C241T C3037T C14408T A23403G ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_419584
 2020-03-13 2020-04-02
 Luxembourg hCoV-19/Luxembourg/LNS3711853/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_419600
 2020-03-13 2020-04-02
 Luxembourg hCoV-19/Luxembourg/LNS9080444/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_419660
 2020-03-13 2020-04-03
 Austria hCoV-19/Austria/CeMM0007/2020
 C241T C3037T C14408T C18877T A23403G G25563T A28049R TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_419771 MT450974
 2020-03-13 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC59/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C6310A C6312A G11083T C13730T C19524T C23929T C28311T

EPI_ISL_419772 MT450975
 2020-03-13 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC60/2020
 ATTA1- C21T G7007A C8782T G18180A C26088T T28144C C28868A

EPI_ISL_419774 MT450977
 2020-03-13 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC62/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23403G A26530G

EPI_ISL_419780 MT450980
 2020-03-13 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC66/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C1076T G1397A G11083T T28688C G29742T

EPI_ISL_419781 MT450981
 2020-03-13 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC67/2020
 A1- C8782T C17747T A17858G C18060T T28144C T29855C

EPI_ISL_419782 MT450982
 2020-03-13 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC68/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C8782T C17747T A17858G C18060T A24694T G25340A T28144C

EPI_ISL_419783 MT450983
 2020-03-13 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC69/2020
 ATTA1- C8782T C17747T A17858G C18060T A24694T G25340A T28144C

EPI_ISL_419786 MT450984
 2020-03-13 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC70/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G11083T C14805T T17247C G26144T

EPI_ISL_420129
 2020-03-13 2020-04-05
 Spain hCoV-19/Spain/Valencia45/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T C2997T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420532
 2020-03-13 2020-04-06
 Australia hCoV-19/Australia/WA02/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C14408T A23403G C25350T GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_420537
 2020-03-13 2020-04-06
 Australia hCoV-19/Australia/WA07/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- T1368C C6990T G11083T C14805T C20736T C23707T G26144T C27925T GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_420628 MT322412
 2020-03-13 2020-04-08
 United States SARS-CoV-2/human/USA/VA-DCLS-0024/2020
 AT1- C8626T C8782T C17747T A17858G C18060T T28144C GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_421354 MT370915
 2020-03-13 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08125/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T A2018G C3037T C14408T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_421360 MT370881
 2020-03-13 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08138/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A20755C A23403G G25563T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_421415 MT370889
 2020-03-13 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08472/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G A24520G G25563T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_422408
 2020-03-13 2020-04-10
 Taiwan hCoV-19/Taiwan/NTU05/2020
 C241T C1059T A2219G C3037T C14408T C23185T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_422409
 2020-03-13 2020-04-10
 Taiwan hCoV-19/Taiwan/NTU06/2020
 A1515G C9223T G11083T C14805T T17247C G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_422410
 2020-03-13 2020-04-10
 Taiwan hCoV-19/Taiwan/NTU07/2020
 ATG1605- G2036A C3990T A18333T C19011T A23614G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_422430
 2020-03-13 2020-04-10
 Singapore hCoV-19/Singapore/37/2020
 ATTAAA1- C241T G373K C1059T C1093M C3037T C13643Y C14408T A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_422644 LR877940
 2020-03-13 2020-04-11
 Netherlands hCoV-19/Netherlands/Gelderland_8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1397A A6466G C7164T T7672C G11083T C12651T C23191T G26196A C28377T T28688C G29742T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422799 LR878116
 2020-03-13 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_38/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422801 LR878120
 2020-03-13 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_40/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- C17410T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422802 LR878125
 2020-03-13 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_41/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- A2871G C17410T C24919T G27390T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422803 LR878126
 2020-03-13 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_42/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422868 LR878114
 2020-03-13 2020-04-11
 Netherlands hCoV-19/Netherlands/NoordBrabant_72/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- C17410T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422869 LR877736 LR878140
 2020-03-13 2020-04-11
 Netherlands hCoV-19/Netherlands/NoordBrabant_73/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T A12820G C13119T C14805T T17247C G26144T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422905 LR878135
 2020-03-13 2020-04-11
 Netherlands hCoV-19/Netherlands/ZuidHolland_33/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T A12820G C13119T C14805T T17247C G26144T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422961
 2020-03-13 2020-04-12
 United States hCoV-19/USA/IL-UW-1265/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- AACC34HTTH G578A C8782T C17747T A17858G C18060T A24694T C25207T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_425471
 2020-03-13 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10DF32/2020
 ATG1605- C13965T C20270T

EPI_ISL_425650
 2020-03-13 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR103/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C23422T T23849C C29686T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425652
 2020-03-13 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR106/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C22208T A23403G C23422T T23849C C29686T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425653
 2020-03-13 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR107/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C20823T A23403G C23422T T23849C C29686T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425654
 2020-03-13 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR108/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C20823Y A23403G C23422T T23849C C29686T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425670
 2020-03-13 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR128/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C23422T T23849C C29686T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425671
 2020-03-13 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR129/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C23422T T23849C G29227A C29686T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425730
 2020-03-13 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR20/2020
 

EPI_ISL_425739
 2020-03-13 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR21/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC C29253T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425759
 2020-03-13 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR30/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1884T C3037T C14408T A23403G T26497C ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_425760
 2020-03-13 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR31/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C541T C1059T C3037T G11083T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425761
 2020-03-13 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR32/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425764
 2020-03-13 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR35/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C9967Y G11083T C14805T T17247C G26144T G27915R CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425765
 2020-03-13 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR36/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C9246T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425766
 2020-03-13 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR37/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T C5340T G11083T C14805T T22574C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425767
 2020-03-13 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR38/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9565T C14408T C22277A A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425769
 2020-03-13 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR41/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C823T C3037T C3373A C14408T A23403G T26066Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425770
 2020-03-13 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR42/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T C5340T G11083T C14805T T22574C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425772
 2020-03-13 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR44/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G443A A1587G G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425773
 2020-03-13 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR45/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1587G G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425774
 2020-03-13 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR46/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1587G G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425777
 2020-03-13 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR49/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10741T C14408T A23403G C27046T C28344A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425779
 2020-03-13 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR51/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C23575T G23587C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425783
 2020-03-13 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR54/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425791
 2020-03-13 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR63/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G26640T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425817
 2020-03-13 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR97/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G26640T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425827
 2020-03-13 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB021/2020
 C241T C3037T C14408T A23403G

EPI_ISL_425839
 2020-03-13 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB033/2020
 C241T C3037T G10201T C14408T A23403G GGG28881AAC G29540T

EPI_ISL_426515
 2020-03-13 2020-04-17
 United States hCoV-19/USA/AZ-TG268909/2020
 C241T C1059T C3037T C14408T C19862T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_427294
 2020-03-13 2020-04-18
 Brazil hCoV-19/Brazil/DF-615i/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T A23403G T27299C GGG28881AAC T29148C GAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29781-

EPI_ISL_427295
 2020-03-13 2020-04-18
 Brazil hCoV-19/Brazil/DF-619i/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T A23403G T27299C GGG28881AAC T29148C GAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29781-

EPI_ISL_427531
 2020-03-13 2020-04-19
 United States hCoV-19/USA/NY-WCMP4A02N/2020
 C8782T C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871RG

EPI_ISL_427532
 2020-03-13 2020-04-19
 United States hCoV-19/USA/NY-WCMP4B06P/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871RG

EPI_ISL_427533
 2020-03-13 2020-04-19
 United States hCoV-19/USA/NY-WCMP4C01P/2020
 C241T C1059T C3037T C7735T C14408T A20755C A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871RG

EPI_ISL_427534
 2020-03-13 2020-04-19
 United States hCoV-19/USA/NY-WCMP4C02N/2020
 C241T C1059T C3037T C7735T C14408T A20755C A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871RG

EPI_ISL_427535
 2020-03-13 2020-04-19
 United States hCoV-19/USA/NY-WCMP4D01P/2020
 C241T C1059T C3037T C14408T A20755C A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871RG

EPI_ISL_427536
 2020-03-13 2020-04-19
 United States hCoV-19/USA/NY-WCMP4D04P/2020
 C6720T C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871W

EPI_ISL_427537
 2020-03-13 2020-04-19
 United States hCoV-19/USA/NY-WCMP4E05P/2020
 C241T C1059T C3037T C14408T A23403G G25563T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870WCGG

EPI_ISL_427538
 2020-03-13 2020-04-19
 United States hCoV-19/USA/NY-WCMP4G04P/2020
 C241T C1059T C3037T C6145T C14408T C21575Y A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871C

EPI_ISL_427539
 2020-03-13 2020-04-19
 United States hCoV-19/USA/NY-WCMP4H03P/2020
 C241T C1059T C3037T C6573T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_427540
 2020-03-13 2020-04-19
 United States hCoV-19/USA/NY-WCMP5F01P/2020
 C241T C1059T C3037T G12769T C14408T A23403G G25563T G26452T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871RGG

EPI_ISL_427541
 2020-03-13 2020-04-19
 United States hCoV-19/USA/NY-WCMP5G03P/2020
 G11083T C14805T T17247C G26144T C27883T A29871R AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_427542
 2020-03-13 2020-04-19
 United States hCoV-19/USA/NY-WCMP5H02P/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871R

EPI_ISL_427543
 2020-03-13 2020-04-19
 United States hCoV-19/USA/NY-WCMP5H03P/2020
 G11083T C14805T T17247C G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_428724
 2020-03-13 2020-04-21
 United States hCoV-19/USA/WI-UW-250/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428831
 2020-03-13 2020-04-22
 Singapore hCoV-19/Singapore/52/2020
 ATTAAA1- T87Y A1515R C4331T C9223T G11083T C14805T T17247C G26144T C28775T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_428868
 2020-03-13 2020-04-22
 Russia hCoV-19/Russia/StPetersburg-64304/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_428869
 2020-03-13 2020-04-22
 Russia hCoV-19/Russia/Moscow_64405/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_428870
 2020-03-13 2020-04-22
 Russia hCoV-19/Russia/Moscow-64601/2020
 C241T C2933T C3037T G4255T C14408T G14511T G16935T A23403G A26530G

EPI_ISL_428871
 2020-03-13 2020-04-22
 Russia hCoV-19/Russia/Krasnoyarsk-66501/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429164
 2020-03-13 2020-04-23
 Thailand hCoV-19/Thailand/Bangkok-0025/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- A895G C2942T G4390T C8782T C9598T G14212A G20134T G24047A T28144C C28453Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_429165
 2020-03-13 2020-04-23
 Thailand hCoV-19/Thailand/Bangkok-0026/2020
 A1- A895G C2942T G4390T C8782T C9598T G20134T G24047A G27877T T28144C AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_429166
 2020-03-13 2020-04-23
 Thailand hCoV-19/Thailand/Bangkok-0028/2020
 AT1- A895G C2942T G4390T C8782T C9598T G20134T G24047A G27877T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_429167
 2020-03-13 2020-04-23
 Thailand hCoV-19/Thailand/Bangkok-0029/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- A895G C2942T G4390T C8782T C9598T G20134T G24047A T28144C

EPI_ISL_429293
 2020-03-13 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH37/2020
 C241T C1059T C1302T C3037T C9979T C14408T A23403G G25563T G29779T

EPI_ISL_429295
 2020-03-13 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH39/2020
 T514C ATG1605- C17410T

EPI_ISL_429300
 2020-03-13 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH46/2020
 C241T C1059T C3037T T8788C C14408T A23403G G25563T G26951A

EPI_ISL_429669
 2020-03-13 2020-04-24
 Brazil hCoV-19/Brazil/CV6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C3037T C11956T C14408T A23403G G25563T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_430150 MT627619
 2020-03-13 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S296/2020
 C8782T C17747T A17858G C18060T G21255C G26365T T28144C

EPI_ISL_430151 MT627615
 2020-03-13 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S297/2020
 G3955T A8681G C8782T C17747T A17858G C18060T T28144C

EPI_ISL_430162 MT632613
 2020-03-13 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S125/2020
 C8782T T11320C C17747T A17858G C18060T T28144C

EPI_ISL_430163 MT632600
 2020-03-13 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S126/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_430164 MT632602
 2020-03-13 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S127/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_430165 MT632569
 2020-03-13 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S128/2020
 C8782T T13845C C17747T A17858G C18060T T28144C

EPI_ISL_430166 MT632603
 2020-03-13 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S129/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_430167 MT632610
 2020-03-13 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S130/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_430168 MT632552
 2020-03-13 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S131/2020
 C8782T T11320C C17747T A17858G C18060T T28144C

EPI_ISL_430170 MT632623
 2020-03-13 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S133/2020
 C8782T T11320C C17747T A17858G C18060T T28144C

EPI_ISL_430172 MT632580
 2020-03-13 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S135/2020
 C8782T T11320C C17747T A17858G C18060T T28144C

EPI_ISL_430173 MT632555
 2020-03-13 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S136/2020
 C8782T T11320C C17747T A17858G C18060T T28144C

EPI_ISL_430174 MT632582
 2020-03-13 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S137/2020
 C8782T C17747T A17858G C18060T G23120T T28144C

EPI_ISL_430178 MT632618
 2020-03-13 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S141/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_430179 MT632608
 2020-03-13 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S142/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_430185 MT632541
 2020-03-13 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S148/2020
 C241T C1059T C3037T C14408T A23403G G25563T G29553A

EPI_ISL_430881 MT412233
 2020-03-13 2020-04-28
 United States SARS-CoV-2/human/USA/UNKNOWN-UW-531/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- AACC34TTTA C8782T C17747T A17858G C18060T G21255C T28144C ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_430888 MT412235
 2020-03-13 2020-04-28
 United States SARS-CoV-2/human/USA/WA-UW-558/2020
 ATTAAAGGTTTATACCTTCCCAGG1- A31T AAC34TTT C8782T C17747T A17858G C18060T A27397G T28144C

EPI_ISL_430895 MT412234
 2020-03-13 2020-04-28
 United States SARS-CoV-2/human/USA/WA-UW-604/2020
 ATTAAAGGTTTAT1- CCCAGGTAACAAACCAA19- C36T C8782T C9866T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_431118
 2020-03-13 2020-04-29
 China hCoV-19/Fujian/IM3520001T/2020
 ATTAAAGGTTTATACCTTC1- A26- C28T C241T C1059T C3037T C14408T A23403G G25563T G26589T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_434486
 2020-03-13 2020-04-29
 Greece hCoV-19/Greece/151/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGG28881AAC TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_434645
 2020-03-13 2020-04-30
 Sweden hCoV-19/Sweden/20-05627/2020
 C241T C3037T C14408T A23403G

EPI_ISL_434684
 2020-03-13 2020-05-01
 United States hCoV-19/USA/MD-HP00023/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_434699
 2020-03-13 2020-05-01
 Thailand hCoV-19/Thailand/NIH-2296/2020
 ATTAAAGGTTTAT1- A895G C2942T G4390T C8782T C9598T G20134T G24047A G27877T T28144C C29854Y C29857Y AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_434726
 2020-03-13 2020-05-01
 United States hCoV-19/USA/TX-HMH016/2020
 C241T C1059T C3037T C14408T A23403G G24794T G25563T C27964T

EPI_ISL_434727
 2020-03-13 2020-05-01
 United States hCoV-19/USA/TX-HMH017/2020
 C241T C1059T C3037T C14408T A23403G G24794T G25563T C27964T

EPI_ISL_435063
 2020-03-13 2020-05-02
 India hCoV-19/India/NCDC-01326/2020
 C241T C1059T C3037T T8022K A8026W C10449Y C14408T A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_435313
 2020-03-13 2020-05-04
 Vietnam hCoV-19/Vietnam/VNHN_0762/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C313T C3037T C14408T A23403G T25652G TT27792- GGG28881AAC A29122C GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_435314
 2020-03-13 2020-05-04
 Vietnam hCoV-19/Vietnam/VNHN_0764/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T C1059T C3037T C14184T C14408T C15720T A23403G G25563T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_435649
 2020-03-13 2020-05-05
 United States hCoV-19/USA/CA-SCCPHD-UC170/2020
 G26951T C27874T

EPI_ISL_435654
 2020-03-13 2020-05-05
 United States hCoV-19/USA/CA-SCCPHD-UC175/2020
 G26951T C27874T

EPI_ISL_435720
 2020-03-13 2020-05-05
 United States hCoV-19/USA/CT-Yale-151/2020
 C241T C1059T G1149A C3037T C14408T A20755C A23403G G25563T

EPI_ISL_436070 MT434802
 2020-03-13 2020-05-05
 United States SARS-CoV-2/human/USA/NY-CDC-SURV0495NYC/2020
 C241T C1059T T5698C C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_436212
 2020-03-13 2020-05-06
 Spain hCoV-19/Spain/Valencia117/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C2358T C3037T C5348T C14408T A23403G C25207T G25563T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_436213
 2020-03-13 2020-05-06
 Spain hCoV-19/Spain/Valencia118/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C8782T T9477A C14805T C20582T G25979T T28144C C28657T C28863T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_436214
 2020-03-13 2020-05-06
 Spain hCoV-19/Spain/Valencia119/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_436290
 2020-03-13 2020-05-06
 Spain hCoV-19/Spain/Valencia195/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C14408T T17126C A20268G A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_436292
 2020-03-13 2020-05-06
 Spain hCoV-19/Spain/Valencia197/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C14408T A20268G A23403G G29734C AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_436812 MT439244
 2020-03-13 2020-05-06
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20136/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C14408T A23403G G25563T C26060T TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_436814 MT439245
 2020-03-13 2020-05-06
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20158/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_437967
 2020-03-13 2020-05-12
 Austria hCoV-19/Austria/CeMM0108/2020
 C7011Y G11083T C14805Y C18086Y T22521K G26144K G28842K TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_437975
 2020-03-13 2020-05-12
 Austria hCoV-19/Austria/CeMM0117/2020
 C241T C1059T C3037T C14408T G15380T T22521K A23403G G25563T C27654Y TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_437985
 2020-03-13 2020-05-12
 Austria hCoV-19/Austria/CeMM0132/2020
 C241T C1059T C3037T C14408T T22521K A23403G G25563T A27023G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_437986
 2020-03-13 2020-05-12
 Austria hCoV-19/Austria/CeMM0133/2020
 C241T C1059T C3037T C14408T G15380T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_437987
 2020-03-13 2020-05-12
 Austria hCoV-19/Austria/CeMM0134/2020
 C241T A761G C1059T C3037T A6825C C14408T T22521K A23403G G25563T GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_437988
 2020-03-13 2020-05-12
 Austria hCoV-19/Austria/CeMM0135/2020
 C241T C1059T C3037T C14408T A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_437989
 2020-03-13 2020-05-12
 Austria hCoV-19/Austria/CeMM0136/2020
 C241T C1059T C3037T C14408T A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_437990
 2020-03-13 2020-05-12
 Austria hCoV-19/Austria/CeMM0137/2020
 C241T C3037T C3373A C14408T T22521K A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_437991
 2020-03-13 2020-05-12
 Austria hCoV-19/Austria/CeMM0139/2020
 C241T C1059T C3037T C14408T G15380T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_437992
 2020-03-13 2020-05-12
 Austria hCoV-19/Austria/CeMM0140/2020
 C241T C1059Y C3037T C3373M C14408T G15380K A23403G G25563K GGG28881RRS AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_438029
 2020-03-13 2020-05-12
 Austria hCoV-19/Austria/CeMM0188/2020
 C241T C1059T C3037T G13921K C14408T A23403G T25414Y G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_438030
 2020-03-13 2020-05-12
 Italy hCoV-19/Austria/CeMM0189/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC AAAAAAAAAAA29893-

EPI_ISL_438031
 2020-03-13 2020-05-12
 Austria hCoV-19/Austria/CeMM0190/2020
 C241T C3037T G12832A C14408T T22521K A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_438032
 2020-03-13 2020-05-12
 Austria hCoV-19/Austria/CeMM0191/2020
 T514C C17410T T22521K G28048T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_438033
 2020-03-13 2020-05-12
 Austria hCoV-19/Austria/CeMM0192/2020
 G1440A C7011T AAAAAAAAAAA29893-

EPI_ISL_440399
 2020-03-13 2020-05-12
 United Kingdom hCoV-19/England/CAMB-7558F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T C3037T C3373A C11195T C14408T A23403G G23755T T25202K GGG28881AAC

EPI_ISL_444455 EPI_ISL_454693
 2020-03-13 2020-05-28
 United States hCoV-19/USA/CA-QDX-03-2/2020
 G4285T C8782T C17747T A17858G C18060T T28144C C29642T AAAAAAAAAAAAAAAA29888-

EPI_ISL_444493 MT466071
 2020-03-13 2020-05-13
 Uruguay SARS-CoV-2/human/URY/Mdeo-1/2020
 C8782T C17470T C26088T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_444518 EPI_ISL_454692
 2020-03-13 2020-05-28
 United States hCoV-19/USA/WA-QDX-02-2/2020
 G2840A G5572T C8782T C17747T A17858G C18060T A26045G T28144C

EPI_ISL_445096
 2020-03-13 2020-05-15
 United States hCoV-19/USA/CA-SR0097/2020
 C8782T C17747T A17858G C18060T C21614T A24694T G26929A T28144C C29870A

EPI_ISL_445271
 2020-03-13 2020-05-15
 Chile hCoV-19/Chile/Chillan_1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T G10265A C14408T A23403G GGG28881AAC ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_445358
 2020-03-13 2020-05-15
 Chile hCoV-19/Chile/Santiago_62/2020
 T2C A4T A7591R C8782T C14599T G18826T C19983T C26088T C26873T T28144C ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_447121
 2020-03-13 2020-05-16
 Belgium hCoV-19/Belgium/ULG-6842/2020
 G1440A G2891A

EPI_ISL_447123
 2020-03-13 2020-05-16
 Belgium hCoV-19/Belgium/ULG-9535/2020
 C241T C3037T C14408T A23403G

EPI_ISL_447638 MT459874
 2020-03-13 2020-05-11
 Greece SARS-CoV-2/human/GRC/206_33492/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_447639 MT459875
 2020-03-13 2020-05-11
 Greece SARS-CoV-2/human/GRC/207_33548/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_447921
 2020-03-13 2020-05-19
 Thailand hCoV-19/Thailand/Bangkok_2294/2020
 C2708T C6312A T8987A G11083T C13730T C23929T C28311T AAAA29900-

EPI_ISL_450096
 2020-03-13 2020-05-20
 United States hCoV-19/USA/NY-PV09416/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T C1059T C3037T C14408T A23403G G25563T ACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29768-

EPI_ISL_450097
 2020-03-13 2020-05-20
 United States hCoV-19/USA/NY-PV09418/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G G25563T TAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29775-

EPI_ISL_450099
 2020-03-13 2020-05-20
 United States hCoV-19/USA/NY-PV09420/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTG1- C241T C1059T C3037T C14408T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450100
 2020-03-13 2020-05-20
 United States hCoV-19/USA/NY-PV09421/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C3037T C14408T A23403G G25644T GGG28881AAC GGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29778-

EPI_ISL_450101
 2020-03-13 2020-05-20
 United States hCoV-19/USA/NY-PV09422/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C3037T C14408T A23403G GGG28881AAC AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450105
 2020-03-13 2020-05-20
 United States hCoV-19/USA/NY-PV09428/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G G25563T C27964T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450111
 2020-03-13 2020-05-20
 United States hCoV-19/USA/NY-PV09434/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T T9070C T10960C C14408T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450112
 2020-03-13 2020-05-20
 United States hCoV-19/USA/NY-PV09435/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450514
 2020-03-13 2020-05-21
 Lebanon hCoV-19/Lebanon/S8_767/2020
 CT40AC C241T C3037T C6198A A8651- C8655T A8658G C13381T C14408T A23403G G25563T C25609T C28354T

EPI_ISL_451673 LR824235
 2020-03-13 2020-05-25
 Switzerland 100081
 C241T C3037T A8095R C14408T C15324T A23403G

EPI_ISL_451674 LR824237
 2020-03-13 2020-05-25
 Switzerland 100082
 C241T C3037T C12100T C14408T C15324T T22516D A23403G

EPI_ISL_451675 LR824236
 2020-03-13 2020-05-25
 Switzerland 100083
 C241T C3037T C4582Y C14408T C15324T C17336Y C19366M T19370H T19538Y A22398M T22516K A23403G

EPI_ISL_451676 LR824240
 2020-03-13 2020-05-25
 Switzerland 100084
 C241T C3037T C14408T T22372Y A23403G

EPI_ISL_451677 LR824238
 2020-03-13 2020-05-25
 Switzerland 100085
 C241T C3037T C6040T C9891Y C14408T A19298W T19482K G19542K A22368W A23403G

EPI_ISL_451678 LR824247
 2020-03-13 2020-05-25
 Switzerland 100086
 C241T C3037T C14408T C15324T C22347S C22498M A23403G G28690K C29733Y

EPI_ISL_451682 LR824249
 2020-03-13 2020-05-25
 Switzerland 100090
 C241T C1059T C3037T G11083T C14408T C16616T G22363K A23403G G25563T

EPI_ISL_451683 LR824248
 2020-03-13 2020-05-25
 Switzerland 100091
 C241T C3037T C14408T C15324T G22361K A23403G G28373T

EPI_ISL_451684 LR824250
 2020-03-13 2020-05-25
 Switzerland 100092
 C241T C643Y C3037T C3787T C3924Y C14408T C15251Y C15324T A19298W T19350Y T19456Y T19473W T19482K T19497W A22394R A23403G C27503Y G29779K

EPI_ISL_451685 LR824251
 2020-03-13 2020-05-25
 Switzerland 100093
 C241T C3037T C5175Y C14408T C15324T A19298W A23403G C23551Y

EPI_ISL_451689 LR824241
 2020-03-13 2020-05-25
 Switzerland 100097
 C241T C1059T C1824Y C3037T C14408T A17631M A19298W T19344Y A19357R C19366Y G19486S A19535R A23403G G25563T

EPI_ISL_451691 LR824244
 2020-03-13 2020-05-25
 Switzerland 100099
 C241T C3037T C14408T T19839C A22488R T22516W A23403G GGG28881AAC

EPI_ISL_452118 MT512446
 2020-03-13 2020-05-26
 United States SARS-CoV-2/human/USA/AZ-CDC-1911/2020
 C241T C1059T C3037T C13297T C14408T A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_452320
 2020-03-13 2020-05-27
 United States hCoV-19/USA/MI-MDHHS-SC20446/2020
 C241T G960R C1059T C3037T C4202T C14408T A23403G G25563T C28289Y

EPI_ISL_452327
 2020-03-13 2020-05-27
 China hCoV-19/Beijing/DT-travelAT01/2020
 C241T C1059T C3037T T8022G C14408T T19299G T20891G A23403G G25217T G25563T

EPI_ISL_452329
 2020-03-13 2020-05-27
 China hCoV-19/Beijing/DT-travelDE01/2020
 

EPI_ISL_452459
 2020-03-13 2020-05-27
 Spain hCoV-19/Spain/COV001889/2020
 C2676T C8782T G11083T C11620T C19263T G21770R C26088T T28144C

EPI_ISL_454011
 2020-03-13 2020-05-28
 Portugal hCoV-19/Portugal/PT0295/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C2143T C8782T T9477A C14805T G25785T G25979T T28144C C28657T C28863T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454012
 2020-03-13 2020-05-28
 Portugal hCoV-19/Portugal/PT0296/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C2143T C8782T T9477A C14805T G25785T G25979T T28144C C28657T C28863T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454013
 2020-03-13 2020-05-28
 Portugal hCoV-19/Portugal/PT0297/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C2143T C8782T T9477A C14805T G25785T G25979T T28144C C28657T C28863T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454014
 2020-03-13 2020-05-28
 Portugal hCoV-19/Portugal/PT0298/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3140T C14408T A23403G G24077T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454223
 2020-03-13 2020-05-28
 Portugal hCoV-19/Portugal/PT0499/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T G16744A A20268G G21190A A23403G T26301G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454329
 2020-03-13 2020-05-28
 Portugal hCoV-19/Portugal/PT0606/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T C19374T C21575T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454330
 2020-03-13 2020-05-28
 Portugal hCoV-19/Portugal/PT0607/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454526
 2020-03-13 2020-05-28
 India hCoV-19/India/NIV-1804/2020
 G1397A A3039G G11083T A18052G A25596G T28688C A28795G G29742T A29827T G29830C

EPI_ISL_454527
 2020-03-13 2020-05-28
 India hCoV-19/India/NIV-2387/2020
 C241T C3037T C14408T A23403G A26530G G26690T G29830T

EPI_ISL_454759
 2020-03-13 2020-05-29
 Netherlands hCoV-19/Netherlands/Utrecht_10010/2020
 ATTAAAGGTTTAT1- C241T C1059T C3037T C14408T C20844T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_454941
 2020-03-13 2020-05-29
 China hCoV-19/Wuhan/HB-WH3-179/2020
 

EPI_ISL_455355 MT539162 MW008562
 2020-03-13 2020-05-29
 United States SARS-CoV-2/human/USA/GA-EHC-009I/2020
 ATTAAA1- T490A C3177T C6040T C8782T G12478A T18736C C24034T T26729C G28077C T28144C C28896G A29700G AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_455378
 2020-03-13 2020-05-29
 China hCoV-19/Wuhan/HB-WH3-178/2020
 T953C TG14865- C22482T T25382C

EPI_ISL_455379
 2020-03-13 2020-05-29
 China hCoV-19/Wuhan/HB-WH3-180/2020
 AG14463-

EPI_ISL_455434
 2020-03-13 2020-05-29
 Mexico hCoV-19/Mexico/CDMX-InDRE_10/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C14408T A20755C A23403G G25563T TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_455445
 2020-03-13 2020-05-29
 Poland hCoV-19/Poland/PL_P32/2020
 C241T C3037T G4255T C14408T A20355G A23403G A26530G C29642T

EPI_ISL_455446
 2020-03-13 2020-05-29
 Poland hCoV-19/Poland/PL_P33/2020
 C241T C3037T G4255T C14408T A20355G A23403G A26530G C29642T

EPI_ISL_455587
 2020-03-13 2020-06-01
 Thailand hCoV-19/Thailand/Nakhonnayok_2829/2020
 A895G C2942T G4390T C8782T C9598T G20134T G24047A G27877T T28144C AAAAAAAAAAAA29892-

EPI_ISL_455607
 2020-03-13 2020-06-01
 Thailand hCoV-19/Thailand/Bangkok_2489/2020
 A895G C2942T G4390T C8782T C9598T G20134T G24047A G27877T T28144C AAAAAAAAAAAA29892-

EPI_ISL_455927
 2020-03-13 2020-06-01
 Thailand hCoV-19/Thailand/Bangkok-CONI-0133/2020
 ATTAAAGGTTT1- C2708T C6312A G11083T C13730T C23929T C28311T

EPI_ISL_455931
 2020-03-13 2020-06-01
 Thailand hCoV-19/Thailand/Bangkok-CONI-0137/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A895G C2942T G4390T C8782T C9598T G20134T G21296A G24047A G27877T T28144C AAAAAA29898-

EPI_ISL_457805 MT646075
 2020-03-13 2020-06-02
 United States SARS-CoV-2/human/USA/DC-HP00063/2020
 C6312A G11083T C11455T C13730T C23929T C28311T

EPI_ISL_460253 MT520328
 2020-03-13 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00514/2020
 ATTAAAGGTTTATACCTTCCC1- C241T C2416T C3037T C14408T A23403G G25563T G26233T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_460665
 2020-03-13 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_492/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2755A C3037T ATGTAGACAATTCTA6561- C14408T C15324T G22616T A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461115
 2020-03-13 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_680/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T C17125T T17247C G26144T G27201T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_462477
 2020-03-13 2020-06-08
 Spain hCoV-19/Spain/Andalucia202659/2020
 A8621G C8782T TG8827AT T9477A A10181G T11110A C13059T C14805T G14997T A15954G T16167A G25720A -26532A C26681T T28144C C28657T C28863T

EPI_ISL_463970
 2020-03-13 2020-06-11
 Canada hCoV-19/Canada/ON_MU-S1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C3037T C14408T G19469K A23403G G25217T G25563T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_463988
 2020-03-13 2020-06-11
 Canada hCoV-19/Canada/ON_MU-S5/2020
 ATTAAA1- C241T C1059T C3037T C14408T A23403G G25563T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_463993
 2020-03-13 2020-06-11
 Canada hCoV-19/Canada/ON_MU-S7/2020
 ATTAAAG1- T490A C3177T C8782T C16260T T18736C C24034T T26729C G28077C T28144C A29700G GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_464908
 2020-03-13 2020-06-11
 United Kingdom hCoV-19/England/20118039804/2020
 G1440A G2891R C10336Y C13423T A27669G

EPI_ISL_464923
 2020-03-13 2020-06-11
 United Kingdom hCoV-19/England/20118050804/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_464957
 2020-03-13 2020-06-11
 United Kingdom hCoV-19/England/20118112104/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_464997
 2020-03-13 2020-06-11
 United Kingdom hCoV-19/England/20118176104/2020
 C241T C3037T C14408T A23403G C25350T

EPI_ISL_465036
 2020-03-13 2020-06-11
 United Kingdom hCoV-19/England/20119026204/2020
 A2480G C2558T G11083T C14805T C16349Y C18877T G26144T

EPI_ISL_465059
 2020-03-13 2020-06-11
 United Kingdom hCoV-19/England/20119041204/2020
 A2480G C2558T G11083T A14185T C14805T G26144T

EPI_ISL_465079
 2020-03-13 2020-06-11
 United Kingdom hCoV-19/England/20119057204/2020
 A1515G C9223T G11083T C14805T T17247C A21625G G26144T C27972T

EPI_ISL_467105
 2020-03-13 2020-06-12
 Spain hCoV-19/Spain/COV001575/2020
 C8782T T9477A C14805T A23586G G25979T T28144C C28657T T28705C C28863T

EPI_ISL_467124
 2020-03-13 2020-06-12
 Spain hCoV-19/Spain/COV001580/2020
 C241T C3037T C14408T A20268G A23403G C28854T C29870A

EPI_ISL_467136
 2020-03-13 2020-06-12
 Spain hCoV-19/Spain/COV001585/2020
 C8782T T9477A C14805T C21997T G25979T T28144C C28657T C28863T

EPI_ISL_467142
 2020-03-13 2020-06-12
 Spain hCoV-19/Spain/COV001594/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T

EPI_ISL_467156
 2020-03-13 2020-06-12
 Spain hCoV-19/Spain/COV001577/2020
 C5730Y C8782T T9477A C14805T C16163Y G25979T G26769K C27526M T28144C C28657T C28863T C29870A

EPI_ISL_467159
 2020-03-13 2020-06-12
 Spain hCoV-19/Spain/COV001528/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T

EPI_ISL_467160
 2020-03-13 2020-06-12
 Spain hCoV-19/Spain/COV001598/2020
 C4012T C8782T T9477A C14805T G25979T T28144C C28657T C28863T C29870A

EPI_ISL_467175
 2020-03-13 2020-06-12
 Spain hCoV-19/Spain/COV001604/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T C29870A

EPI_ISL_467430
 2020-03-13 2020-06-14
 China hCoV-19/Harbin/HRB-25/2020
 C2401T G23236T C23525T G29449T AAAAAAAAAA29894-

EPI_ISL_467832 MT614464
 2020-03-13 2020-06-15
 United States SARS-CoV-2/human/USA/CA-QDX-43/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C379A C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467839 MT614471
 2020-03-13 2020-06-15
 United States SARS-CoV-2/human/USA/CA-QDX-67/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A652G C1059T C1387T C3037T C14408T A20755C A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467844 MT614527
 2020-03-13 2020-06-15
 United States SARS-CoV-2/human/USA/FL-QDX-121/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467845 MT614528
 2020-03-13 2020-06-15
 United States SARS-CoV-2/human/USA/GA-QDX-115/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C8782T T18736C C24034T T26729C C27635T G28077C T28144C A29567C A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467846 MT614529
 2020-03-13 2020-06-15
 United States SARS-CoV-2/human/USA/GA-QDX-116/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C8782T T18736C C24034T C26681T T26729C C27635T G28077C T28144C A29567C A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467847 MT614530
 2020-03-13 2020-06-15
 United States SARS-CoV-2/human/USA/GA-QDX-122/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C8782T T18736C C24034T T26729C C27635T G28077C T28144C A29567C A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467848 MT614561
 2020-03-13 2020-06-15
 United States SARS-CoV-2/human/USA/GA-QDX-152/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C8782T T18736C C24034T T26729C C27635T G28077C T28144C A29567C A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467849 MT614476
 2020-03-13 2020-06-15
 United States SARS-CoV-2/human/USA/GA-QDX-53/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C8782T C16466T T18736C C21575T C24034T T26729C G28077C T28144C C28849T A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467851 MT614532
 2020-03-13 2020-06-15
 United States SARS-CoV-2/human/USA/MA-QDX-127/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C14408T A23403G G25563T G26233T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467867 MT614536
 2020-03-13 2020-06-15
 United States SARS-CoV-2/human/USA/MD-QDX-113/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G C23895T G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467868 MT614488
 2020-03-13 2020-06-15
 United States SARS-CoV-2/human/USA/MI-QDX-26/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467874 MT614537
 2020-03-13 2020-06-15
 United States SARS-CoV-2/human/USA/NJ-QDX-123/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467876 MT614539
 2020-03-13 2020-06-15
 United States SARS-CoV-2/human/USA/NJ-QDX-133/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T AAGTCATTT686- C3037T C14408T C18877T G20014T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467878 MT614541
 2020-03-13 2020-06-15
 United States SARS-CoV-2/human/USA/NJ-QDX-144/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T A2497G C3037T C14408T A22666G A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467902 MT614504
 2020-03-13 2020-06-15
 United States SARS-CoV-2/human/USA/NY-QDX-75/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T C14408T C14585T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467905 MT614555
 2020-03-13 2020-06-15
 United States SARS-CoV-2/human/USA/TN-QDX-126/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467909 MT614556
 2020-03-13 2020-06-15
 United States SARS-CoV-2/human/USA/UT-QDX-118/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G2840A G5572T C8782T C17747T A17858G C18060T A26045G T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467910 MT614557
 2020-03-13 2020-06-15
 United States SARS-CoV-2/human/USA/UT-QDX-119/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C6040T C8782T G12478A T18736C G19967T C24034T T26729C G28077C T28144C C28896G A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467911 MT614558
 2020-03-13 2020-06-15
 United States SARS-CoV-2/human/USA/UT-QDX-120/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C16308T C17747T A17858G C18060T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467912 MT614559
 2020-03-13 2020-06-15
 United States SARS-CoV-2/human/USA/UT-QDX-131/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467913 MT614560
 2020-03-13 2020-06-15
 United States SARS-CoV-2/human/USA/UT-QDX-132/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C22450T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467918 MT614513
 2020-03-13 2020-06-15
 United States SARS-CoV-2/human/USA/UT-QDX-27/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11878A C14408T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467919 MT614514
 2020-03-13 2020-06-15
 United States SARS-CoV-2/human/USA/UT-QDX-49/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C8782T T18736C C24034T T26729C G28077C T28144C A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467921 MT614516
 2020-03-13 2020-06-15
 United States SARS-CoV-2/human/USA/UT-QDX-63/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C6040T C8782T G12478A T18736C C24034T T26729C G28077C T28144C C28896G A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467924 MT614519
 2020-03-13 2020-06-15
 United States SARS-CoV-2/human/USA/UT-QDX-77/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467926 MT614521
 2020-03-13 2020-06-15
 United States SARS-CoV-2/human/USA/WA-QDX-22/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467927 MT614522
 2020-03-13 2020-06-15
 United States SARS-CoV-2/human/USA/WA-QDX-62/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G4790A C8782T C18060T T28144C G28907T A29824G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467960
 2020-03-13 2020-06-16
 United States hCoV-19/USA/CA-SR0430/2020
 C241T C1059T A2018G C3037T C14408T A23403G G25563T

EPI_ISL_468388 MT628124
 2020-03-13 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1413/2020
 C241T C379A C1059T C3037T C14408T A23403G G25012A G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_468507 MT628230
 2020-03-13 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1576/2020
 C4776T A6867G C8782T C17747Y A17858G C18060T G28086T T28144C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_468560 MT627407
 2020-03-13 2020-06-16
 United States SARS-CoV-2/human/USA/CA-QDX-101/2020
 C241T C379A C1059T C3037T C7039T C14408T A23403G G25563T

EPI_ISL_468561 MT627408
 2020-03-13 2020-06-16
 United States SARS-CoV-2/human/USA/CA-QDX-103/2020
 A187G C241T C3037T C14408T A23403G C25916T

EPI_ISL_468562 MT627409
 2020-03-13 2020-06-16
 United States SARS-CoV-2/human/USA/CA-QDX-110/2020
 ATTAAAGGTTTATACCTTC1- C241T C1059T C3037T C9967T C14408T A23403G G25563T C27964T

EPI_ISL_468563 MT627410
 2020-03-13 2020-06-16
 United States SARS-CoV-2/human/USA/CA-QDX-111/2020
 T490A C3177T C6040T C8782T G12478A T18736C C24034T T26729C G28077C T28144C C28896G A29700G

EPI_ISL_468564 MT627411
 2020-03-13 2020-06-16
 United States SARS-CoV-2/human/USA/CA-QDX-83/2020
 C241T C1059T C3037T C14408T G15760A A23403G G25563T

EPI_ISL_468565 MT627412
 2020-03-13 2020-06-16
 United States SARS-CoV-2/human/USA/CA-QDX-84/2020
 C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAA29891-

EPI_ISL_468566 MT627413
 2020-03-13 2020-06-16
 United States SARS-CoV-2/human/USA/CA-QDX-86/2020
 C241T C3037T C14408T A23403G

EPI_ISL_468567 MT627414
 2020-03-13 2020-06-16
 United States SARS-CoV-2/human/USA/CA-QDX-92/2020
 C4115T C8782T C17747T A17858G C18060T A22005G C25046T T28144C

EPI_ISL_468568 MT627415
 2020-03-13 2020-06-16
 United States SARS-CoV-2/human/USA/CA-QDX-97/2020
 C241T C3037T C14408T C19488T A23403G C28826T GGG28881AAC

EPI_ISL_468569 MT627416
 2020-03-13 2020-06-16
 United States SARS-CoV-2/human/USA/CA-QDX-98/2020
 C241T C1059T A2165G C3037T C14408T A23403G G25563T G29711T

EPI_ISL_468571 MT627418
 2020-03-13 2020-06-16
 United States SARS-CoV-2/human/USA/CO-QDX-107/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_468588 MT627435
 2020-03-13 2020-06-16
 United States SARS-CoV-2/human/USA/NY-QDX-96/2020
 C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_468589 MT627436
 2020-03-13 2020-06-16
 United States SARS-CoV-2/human/USA/OK-QDX-93/2020
 AAGTCATTT686- C14925T

EPI_ISL_468590 MT627437
 2020-03-13 2020-06-16
 United States SARS-CoV-2/human/USA/WA-QDX-104/2020
 ATT1- T137C A4590G C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_468738
 2020-03-13 2020-06-17
 Belgium hCoV-19/Belgium/UGent-90/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_468739
 2020-03-13 2020-06-17
 Belgium hCoV-19/Belgium/UGent-91/2020
 C241T C3037T C4809T G12092T C14408T A23403G

EPI_ISL_468740
 2020-03-13 2020-06-17
 Belgium hCoV-19/Belgium/UGent-92/2020
 C241T C3037T G4255T C14408T A23403G A26530G

EPI_ISL_468741
 2020-03-13 2020-06-17
 Belgium hCoV-19/Belgium/UGent-93/2020
 C241T C1059T C3037T C14408T A23403G A25035G G25563T

EPI_ISL_471230
 2020-03-13 2020-06-19
 United States hCoV-19/USA/WI-WSLH-200065/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475086
 2020-03-13 2020-06-23
 Sweden hCoV-19/Sweden/20-50327/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T

EPI_ISL_475087
 2020-03-13 2020-06-23
 Sweden hCoV-19/Sweden/20-50335/2020
 C241T C1059T C3037T C8961T C14408T A23403G G24368T G25563T

EPI_ISL_475088
 2020-03-13 2020-06-23
 Sweden hCoV-19/Sweden/20-50336/2020
 C241T C1059T C3037T C9565T C14408T A23403G G24368T G25563T

EPI_ISL_475089
 2020-03-13 2020-06-23
 Sweden hCoV-19/Sweden/20-50337/2020
 C241T C3037T C14408T C20384T A23403G C27046T GGG28881AAC A29442T

EPI_ISL_475090
 2020-03-13 2020-06-23
 Sweden hCoV-19/Sweden/20-50341/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T

EPI_ISL_475091
 2020-03-13 2020-06-23
 Sweden hCoV-19/Sweden/20-50342/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T

EPI_ISL_475136
 2020-03-13 2020-06-23
 Sweden hCoV-19/Sweden/20-50320/2020
 G1440A G2891A C7011T G28812T

EPI_ISL_475855
 2020-03-13 2020-06-25
 Austria hCoV-19/Austria/CeMM0427/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T19839C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476782
 2020-03-13 2020-06-25
 United States hCoV-19/USA/CA-CZB-1765/2020
 ATTAAA1- C241T C3037T C14408T A20268G G22249T A23403R AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_476783
 2020-03-13 2020-06-25
 United States hCoV-19/USA/CA-CZB-1766/2020
 ATTA1- C8782T C17747T A17858G C18060T A24694T G28086T T28144C A29878M

EPI_ISL_476784
 2020-03-13 2020-06-25
 United States hCoV-19/USA/CA-CZB-1767/2020
 G10642T C11074T G11083T C14805T T17247C G26144T

EPI_ISL_476814
 2020-03-13 2020-06-26
 Singapore hCoV-19/Singapore/478/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476907 MT827827
 2020-03-13 2020-06-27
 United States SARS-CoV-2/human/USA/WA-UW-608/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T C3037T C14408T A23403G G25563T G29553A

EPI_ISL_476908 MT827843
 2020-03-13 2020-06-27
 United States SARS-CoV-2/human/USA/WA-UW-623/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C1469T G11083T C14805T T17247C G26144T G29254T TG29867AA C29870A

EPI_ISL_476915 MT827845
 2020-03-13 2020-06-27
 United States SARS-CoV-2/human/USA/CT-UW-650/2020
 ATTAAAGGTTT1- G116C C241T C3037T C14408T A23403G GGG28881AAC TG29867AA C29870A

EPI_ISL_476916 MT827833
 2020-03-13 2020-06-27
 United States SARS-CoV-2/human/USA/CT-UW-651/2020
 ATTAAAGG1- C241T C3037T C14408T A23403G GGG28881AAC -29904AAAAAAAAAAAAAAA

EPI_ISL_476917 MT827842
 2020-03-13 2020-06-27
 United States SARS-CoV-2/human/USA/CT-UW-652/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGC1- C241T C1059T A2018G C3037T C14408T A23403G G25563T TG29867AA C29870A -29904AAAAAAAAAAAAAAAAAA

EPI_ISL_476918 MT827834
 2020-03-13 2020-06-27
 United States SARS-CoV-2/human/USA/CT-UW-653/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- AC35WT C241T C3037T C14408T A23403G GGG28881AAC -29904AAAAAAAAAAAAAA

EPI_ISL_476921 MT827829
 2020-03-13 2020-06-27
 United States SARS-CoV-2/human/USA/WA-UW-662/2020
 ATTAAAGG1- C36T C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_476928 MT827828
 2020-03-13 2020-06-27
 United States SARS-CoV-2/human/USA/WA-UW-676/2020
 A1- AC35TT C241T C1059T C3037T C14408T A23403G G25563T G29553A

EPI_ISL_476930 MT827817
 2020-03-13 2020-06-27
 United States SARS-CoV-2/human/USA/WA-UW-683/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCT1- C5467T C8782T C17747T A17858G C18060T T28144C C29119T -29904AAAAAAAAAAAA

EPI_ISL_476933 MT827821
 2020-03-13 2020-06-27
 United States SARS-CoV-2/human/USA/WA-UW-687/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACT1- G4510T C8782T C17747T A17858G C18060T G27906T T28144C -29904AAAAAAAAAAAAAA

EPI_ISL_476935 MT827810
 2020-03-13 2020-06-27
 United States SARS-CoV-2/human/USA/WA-UW-696/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A31T C36T C6285T C8782T C17747T A17858G C18060T G27364T T28144C

EPI_ISL_476938 MT827840
 2020-03-13 2020-06-27
 United States SARS-CoV-2/human/USA/WA-UW-864/2020
 A1- C36T C140T TAG4879- C8782T C17747T A17858G C18060T T28144C -29904AAAAAAAAAAAAAAAA

EPI_ISL_479878
 2020-03-13 2020-07-01
 Japan hCoV-19/Japan/PG-0168/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C5787T C11752T C19170A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479896
 2020-03-13 2020-07-01
 Japan hCoV-19/Japan/PG-0191/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACT1- C241T C3037T C10833T C14408T C18877T A23403G G25563T C26735T TTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29821-

EPI_ISL_479897
 2020-03-13 2020-07-01
 Japan hCoV-19/Japan/PG-0192/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C3037T C10833T C14408T C18877T A23403G G25563T C26735T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_479904
 2020-03-13 2020-07-01
 Japan hCoV-19/Japan/PG-0201/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C3656T C8782T G16381A T17877C T28144C G28878A G29742A GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_479932
 2020-03-13 2020-07-01
 Japan hCoV-19/Japan/PG-0241/2020
 ATTAAAGGTTT1- T4402C G5062T C8782T G12070T T28144C G29742T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_480002
 2020-03-13 2020-07-01
 Japan hCoV-19/Japan/PG-0327/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T G16381A T17877C TTTGGGTGTTTA21982- T28144C G28878A G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480104
 2020-03-13 2020-07-01
 Japan hCoV-19/Japan/PG-0439/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACT1- C4784T C8782T G16381A T17877C T28144C G28878A G29742A TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_480105
 2020-03-13 2020-07-01
 Japan hCoV-19/Japan/PG-0440/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACT1- C8782T G16381A T17877C T28144C G28878A G29742A TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_480959
 2020-03-13 2020-07-02
 Spain hCoV-19/Spain/Donostia-San_Sebastian_COV003214/2020
 C8782T T9477A C14805T G25979T G28109T T28144C C28657T C28863T C29025Y

EPI_ISL_481549
 2020-03-13 2020-07-03
 Finland hCoV-19/Finland/13M6S4/2020
 C241T C3037T C5512T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_482484
 2020-03-13 2020-07-03
 Canada hCoV-19/Canada/MB_80/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G G25563T ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_483545
 2020-03-13 2020-07-07
 Bahrain hCoV-19/Bahrein/BAH-04/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T19839C G21761T A23403G GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_484189
 2020-03-13 2020-07-08
 United Kingdom hCoV-19/England/GSTT-265E34A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485002
 2020-03-13 2020-07-09
 South Korea hCoV-19/South Korea/A3/2020
 ATTAAA1- T4402C G5062T C8782T G17814T T28144C A29903-

EPI_ISL_485835 MT739441 MT913054
 2020-03-13 2020-07-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0534/2020
 ATTA1- C241T C2416T C3037T C14408T A23403G G25563T

EPI_ISL_485836 MT739442 MT913055
 2020-03-13 2020-07-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0535/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C1059T C3037T C14408T A23403G G25563T G28968T G29688T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_485839 MT739445 MT913058
 2020-03-13 2020-07-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0538/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C8782T C17747T A17858G C18060T C18486T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_485846 MT739452 MT913065
 2020-03-13 2020-07-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0545/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25563T C29870A

EPI_ISL_485852 MT739458 MT913071
 2020-03-13 2020-07-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0551/2020
 ATTA1- C241T C3037T C14408T C18877T A23403G G25563T G28086T AA29902-

EPI_ISL_485855 MT739461 MT913074
 2020-03-13 2020-07-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0554/2020
 ATTAAAGGTTTATACCT1- C6027T A10236G G11083T C14805T T17247C G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_486105
 2020-03-13 2020-07-10
 United States hCoV-19/USA/WA-UW-682/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCAT1- A8539T C8782T T15927G C17747T A17858G C18060T C26936T T28144C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_486106
 2020-03-13 2020-07-10
 United States hCoV-19/USA/WA-UW-688/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- -65TNNN C241T C1059T C3037T C14408T G16912T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_486427 MT738101
 2020-03-13 2020-07-09
 Brazil SARS-CoV-2/human/BRA/HIAE-SP03/2020
 C241T C3037T T7168C C11022T C14408T A23403G C25904T T27299C GGG28881AAC T29148C

EPI_ISL_488273
 2020-03-13 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F7BA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C541T C1059T C3037T G11083T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488758
 2020-03-13 2020-07-14
 United Kingdom hCoV-19/England/NORT-2813B1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7072T A8072G T10057C C14408T C16329T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488791
 2020-03-13 2020-07-14
 United Kingdom hCoV-19/England/NORT-2841D2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488820
 2020-03-13 2020-07-14
 United Kingdom hCoV-19/England/NORT-2841A5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488834
 2020-03-13 2020-07-14
 United Kingdom hCoV-19/England/NORT-281384/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6726T G11083T C14805T G15444T A17205G G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492332
 2020-03-13 2020-07-20
 United Kingdom hCoV-19/England/BRIS-18545A9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C541T C1059T C3037T G11083T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492557
 2020-03-13 2020-07-20
 United Kingdom hCoV-19/England/BRIS-130B7E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C2416Y A2480G C2558T C2706T A7025G C9724T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492619
 2020-03-13 2020-07-20
 United Kingdom hCoV-19/England/BRIS-130B8D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T C2706T A7025G C9724T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492630
 2020-03-13 2020-07-20
 United Kingdom hCoV-19/England/BRIS-1309CF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G C9223T G11083T C14805T T17247C A21625G G26144T G29427K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492675
 2020-03-13 2020-07-20
 United Kingdom hCoV-19/England/BRIS-130B32/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T19839C A23403G G25552T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492719
 2020-03-13 2020-07-20
 United Kingdom hCoV-19/England/BRIS-1309DE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G C9223T G11083T C14805T T17247C A21625G G26144T G29427K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492726
 2020-03-13 2020-07-20
 United Kingdom hCoV-19/England/BRIS-130ADB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC A29078G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492730
 2020-03-13 2020-07-20
 United Kingdom hCoV-19/England/BRIS-130AEA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC A29078G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_497831
 2020-03-13 2020-07-25
 China hCoV-19/Hong Kong/HKU-200723-064/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T9172C A10948G C14408T A23403G G26730T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_499814
 2020-03-13 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A4AF1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- ATG1605- G18315A

EPI_ISL_500064
 2020-03-13 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A4A6A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A2480G C2558T G11083T A13623T C14805T C25568T G26144T

EPI_ISL_500071
 2020-03-13 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A4AE2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G A26530R T27280C

EPI_ISL_500088
 2020-03-13 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A4DAD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A2480G C2558T G11083T C14805T G26144T

EPI_ISL_500598
 2020-03-13 2020-07-29
 Australia hCoV-19/Australia/NSW2011/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1397A G4255A G9431T C10319T G11083T C16466T G19117A A20047G T28688C G29742T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500628
 2020-03-13 2020-07-29
 Australia hCoV-19/Australia/NSW2147/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G G29348T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_507030 MT820488
 2020-03-13 2020-07-30
 Saudi Arabia SARS-CoV-2/human/SAU/KAIMRC69/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCA1- C241T C3037T C14408T C18877T A23403G G25563T C26735T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507050
 2020-03-13 2020-08-03
 United Kingdom hCoV-19/England/LOND-124D08A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- A2480G C2558T C7279T G11083T C14805T G26144T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_508769 MT834611
 2020-03-13 2020-08-04
 United States SARS-CoV-2/human/USA/FL-BPHL-0565/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C8782T C16457T C17747T A17858G C18060T T28144C TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_508772 MT834614
 2020-03-13 2020-08-04
 United States SARS-CoV-2/human/USA/FL-BPHL-0568/2020
 ATTAAAGGTTTATACC1- G599A C7162T C8782T C16457T C17747T A17858G C18060T T28144C CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_508874
 2020-03-13 2020-08-04
 France hCoV-19/France/ARA08589/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G G25563T C26013T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_508948
 2020-03-13 2020-08-04
 France hCoV-19/France/ARA08417/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGT1- C241T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_509695 MT844047
 2020-03-13 2020-08-05
 Guatemala SARS-CoV-2/human/GTM/CDC-1227/2020
 C241T C14408T A20268G A23403G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_509716 MT846420
 2020-03-13 2020-08-05
 United States SARS-CoV-2/human/USA/FL-BPHL-0658/2020
 ATT1- C1191T C8782T C17747T A17858G C18060T G25445T A28081G T28144C CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_509718 MT846422
 2020-03-13 2020-08-05
 United States SARS-CoV-2/human/USA/FL-BPHL-0660/2020
 ATTAA1- C8782T C16457T C17747T A17858G C18060T T28144C TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_509724 MT846428
 2020-03-13 2020-08-05
 United States SARS-CoV-2/human/USA/FL-BPHL-0666/2020
 ATTA1- C241T C3037T T6294C C14408T A20268G A23403G CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_509725 MT846429
 2020-03-13 2020-08-05
 United States SARS-CoV-2/human/USA/FL-BPHL-0667/2020
 AT1- C241T C3037T T6294C C14408T A20268G A23403G ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_509726 MT846430
 2020-03-13 2020-08-05
 United States SARS-CoV-2/human/USA/FL-BPHL-0668/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C241T C3037T C4002T C6543T G10097A C13536T C14408T A23403G C23731T GGG28881AAC G28908T TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_509727 MT846431
 2020-03-13 2020-08-05
 United States SARS-CoV-2/human/USA/FL-BPHL-0669/2020
 ATTA1- C241T C3037T C5467T C8389T C14408T A23403G G24050T G25563T C26191T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_509728 MT846432
 2020-03-13 2020-08-05
 United States SARS-CoV-2/human/USA/FL-BPHL-0670/2020
 AT1- C241T C1059T C3037T C14408T A23403G G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_510269
 2020-03-13 2020-08-06
 Spain hCoV-19/Spain/COV004027/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C8782T C18084T T18630C C26088T T28144C AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_510312
 2020-03-13 2020-08-06
 Spain hCoV-19/Spain/COV005003/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A20268G A23403G G29734C CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_510328
 2020-03-13 2020-08-06
 Spain hCoV-19/Spain/COV005019/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C3037T C14408T G17814T A19810G A20268G A23403G TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_513416 MT886290
 2020-03-13 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0003/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAA1- C241T C1059T C3037T C14408T A23403G G25563T AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513418 MT886292
 2020-03-13 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0005/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATC1- C241T C3037T C14408T C22450T A23403G AATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29814-

EPI_ISL_513420 MT886294
 2020-03-13 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0007/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAA1- C241T C3037T C14408T C22450T A23403G A25864G AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513423 MT886297
 2020-03-13 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0010/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTG1- C241T C3037T C14408T C17550T C22450T A23403G AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513427 MT886301
 2020-03-13 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0014/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAA1- G1440A G2891A C7011T C12876T G25593C AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513432 MT886306
 2020-03-13 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0019/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAA1- C241T C3037T C14408T C22450T A23403G AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513434 MT886308
 2020-03-13 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0022/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAA1- C241T C1059T C3037T C14408T A23403G G25563T AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513435 MT886309
 2020-03-13 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0023/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAA1- C241T C1059T C3037T C14408T A23403G G25563T AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513464 MT886338
 2020-03-13 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0053/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAA1- A5317G C8782T C17747T A17858G C18060T A19476G T28144C AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_516267
 2020-03-13 2020-08-20
 United States hCoV-19/USA/MI-MDHHS-SC21540/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C11109T C14408T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_517770
 2020-03-13 2020-08-24
 Peru hCoV-19/Peru/INS-061/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAA1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC G29179K ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_523960
 2020-03-13 2020-08-27
 Moldova hCoV-19/Moldova/ChVir7768/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G G29737T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_523994
 2020-03-13 2020-08-27
 Peru hCoV-19/Peru/LAM-INS-073/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAA1- C241T C313T C936T C3037T C14408T C17333T A23403G GGG28881AAC ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_524665
 2020-03-13 2020-08-28
 United Kingdom hCoV-19/England/LOND-1260476/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525613
 2020-03-13 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-14811-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C8782T T10771C C17747T A17858G C18060T T28144C TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_526938
 2020-03-13 2020-09-02
 Denmark hCoV-19/Faroe Islands/HFS-05/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16289T A23403G G25429T AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_526939
 2020-03-13 2020-09-02
 Denmark hCoV-19/Faroe Islands/HFS-06/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G24368T C25511T G25563T AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_526940
 2020-03-13 2020-09-02
 Denmark hCoV-19/Faroe Islands/HFS-10/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1302T C3037T C6196T C14408T A23403G G25563T C25708T AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_528039
 2020-03-13 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42188884/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T T21715G A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528040
 2020-03-13 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42189201/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C313T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_528041
 2020-03-13 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42189220/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G C28344T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528042
 2020-03-13 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42189239/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A20268G A23403G C28854T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528043
 2020-03-13 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42189257/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G5008T C14408T C15324T G18525T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528044
 2020-03-13 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42189386/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C5979T C14408T C15324T A23403G TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_528045
 2020-03-13 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42189451/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- ATG1605- C18486T G29032A G29616T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528046
 2020-03-13 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42189582/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C8293T C14408T T18488C A23403G T24739C A26530G TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_528047
 2020-03-13 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42189643/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528048
 2020-03-13 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42189647/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G4300T C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528049
 2020-03-13 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42189725/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C14408T A20268G A23403G C28854T TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_528050
 2020-03-13 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42189772/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528051
 2020-03-13 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42189773/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528052
 2020-03-13 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42189793/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T T5941A C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528053
 2020-03-13 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42189861/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G12832A C14408T T18087A A23403G GGG28881AAC ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_528054
 2020-03-13 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42189862/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528055
 2020-03-13 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42189866/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_528056
 2020-03-13 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42189907/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528057
 2020-03-13 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42190027/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G ATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29850-

EPI_ISL_528059
 2020-03-13 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42190083/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528061
 2020-03-13 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42190173/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T C15588T C15810T A23403G GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_528063
 2020-03-13 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42190251/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T T11638C C14408T A23403G GGG28881AAC C29708T TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_528064
 2020-03-13 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42190253/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C313T C3037T C14408T A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528065
 2020-03-13 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42190269/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G T25414C G25563T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_528066
 2020-03-13 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42190282/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G5539A C14408T C15324T A23403G ATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29850-

EPI_ISL_528067
 2020-03-13 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42190292/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528068
 2020-03-13 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42190293/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528069
 2020-03-13 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42190359/2020
 ATTAAAGGT1- C241T C3037T C14408T C15324T C17977G A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528070
 2020-03-13 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42190378/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T T5941A C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528073
 2020-03-13 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42190581/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- ATG1605- C6696T C11001T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_528077
 2020-03-13 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42190803/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C313T C3037T C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528079
 2020-03-13 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42190921/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T C21110T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528107
 2020-03-13 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42191735/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T C15324T A23403G G28373T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_528113
 2020-03-13 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42191804/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- T514C ATG1605- C17410T TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_530034
 2020-03-13 2020-09-10
 Spain hCoV-19/Spain/MD-LP106-1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_534986
 2020-03-13 2020-09-14
 United Kingdom hCoV-19/England/OXON-B49E2/2020
 C241T C3037T C14408T A23403G G24781T GGG28881AAC AAAAAAAAA29895-

EPI_ISL_535020
 2020-03-13 2020-09-14
 United Kingdom hCoV-19/England/OXON-B4EA7/2020
 C241T C3037T T8672C C14408T A23403G G25429T C26461T

EPI_ISL_535746
 2020-03-13 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00216421/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535752
 2020-03-13 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00216731/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G19677T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535753
 2020-03-13 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00216909/2020
 ATTAAA1- C241T C1059T C3037T C14408T A18487W T19381Y A19758R A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_535755
 2020-03-13 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00216993/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17747T A17858G C18060T C18657T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535756
 2020-03-13 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00217024/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535757
 2020-03-13 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00217032/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C14408T A23403G G25455T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535758
 2020-03-13 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00217092/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T8767C C8782T T10771C C17747T A17858G C18060T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535759
 2020-03-13 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00217098/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T8767C C8782T T10771C C17747T A17858G C18060T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535760
 2020-03-13 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00217408/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T GTTATG515- AAGTCATTT686- C1059T G2808A C3037T C14408T A23403G G25563T A26433G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535761
 2020-03-13 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00217411/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535762
 2020-03-13 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00217527/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8208T G9267A T9667C C14408T A23403G G25947T G28361A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535763
 2020-03-13 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00217534/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535765
 2020-03-13 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00217574/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G15202T T22288A A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535767
 2020-03-13 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00217831/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9874G C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535768
 2020-03-13 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00217833/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9874G C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535808
 2020-03-13 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00221391/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536437
 2020-03-13 2020-09-16
 Singapore hCoV-19/Singapore/896/2020
 ATTAA1- C6312A G11083T C13730T C19524T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_536545
 2020-03-13 2020-09-16
 Peru hCoV-19/Peru/LIM-INS-150/2020
 ATTAAAG1- G11083T C14805T T17247C G26144T

EPI_ISL_537578
 2020-03-13 2020-09-16
 United States hCoV-19/USA/CA-UCLA-49/2020
 ATTAAAGGTTTATA1- C21T C241T C313T C3037T C14408T A23403G GGG28881AAC GTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29828-

EPI_ISL_539496
 2020-03-13 2020-09-18
 Andorra hCoV-19/Andorra/202552/2020
 C3037T C14408T A20268G A23403G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_539523
 2020-03-13 2020-09-18
 Spain hCoV-19/Spain/CL-ISCIII-202362/2020
 ATTAAAG1- C241T C3037T C14408T A20268G A23403G C25731T

EPI_ISL_541371
 2020-03-13 2020-09-22
 Brazil hCoV-19/Brazil/SC-771/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- A187G C241T TGGTCATGTTATGGT508- C3037T C14408T A23403G GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_547445
 2020-03-13 2020-09-24
 Netherlands hCoV-19/Aruba/AW-RIVM-10101/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T C9170T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547469
 2020-03-13 2020-09-24
 Netherlands hCoV-19/Netherlands/LI-RIVM-10096/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T9477A C14805T C21648T G25979T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547470
 2020-03-13 2020-09-24
 Netherlands hCoV-19/Netherlands/LI-RIVM-10097/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547557
 2020-03-13 2020-09-24
 Netherlands hCoV-19/Netherlands/ZH-RIVM-10050/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C478T C3037T G12550A C14408T A20268G C20740A A23403G G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_548246
 2020-03-13 2020-09-25
 Sweden hCoV-19/Sweden/20-08186/2020
 T514C ATG1605- C17410T

EPI_ISL_548354
 2020-03-13 2020-09-26
 United States hCoV-19/USA/CA-CZB-3636/2020
 AT1- C241T C379A C1059T C3037T G11083T C14408T A23403G G25563T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_560622
 2020-03-13 2020-09-29
 France hCoV-19/France/GE8774/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568556
 2020-03-13 2020-10-02
 Japan hCoV-19/Japan/NGY-NNH-001/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- G3179A C6982T C8782T T28144C G29692K TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

MT452575
 2020-03-13 2020-05-10
 United States SAR-CoV-2/human/USA/WA-QDX-00000002/2020
 G2840A G5572T C8782T C17747T A17858G C18060T A26045G T28144C

MT452576
 2020-03-13 2020-05-10
 United States SAR-CoV-2/human/USA/CA-QDX-00000003/2020
 G4285T C8782T C17747T A17858G C18060T T28144C C29642T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

MT459866
 2020-03-13 2020-05-11
 Greece SARS-CoV-2/human/GRC/151_33690/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

MT509454
 2020-03-13 2020-05-22
 United States SARS-CoV-2/human/USA/MD-HP00023/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT671819
 2020-03-13 2020-06-26
 United States SARS-CoV-2/human/USA/CA-CZB-1765/2020
 ATTAAA1- C241T C3037T C14408T A20268G G22249T A23403R AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT671820
 2020-03-13 2020-06-26
 United States SARS-CoV-2/human/USA/CA-CZB-1766/2020
 ATTA1- C8782T C17747T A17858G C18060T A24694T G28086T T28144C A29878M

MT671821
 2020-03-13 2020-06-26
 United States SARS-CoV-2/human/USA/CA-CZB-1767/2020
 G10642T C11074T G11083T C14805T T17247C G26144T

MT706143
 2020-03-13 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-22/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T G16381A T17877C C20316T G25500T T28144C G28878A G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706243
 2020-03-13 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-250/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT810562
 2020-03-13 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0430-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T A2018G C3037T C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811164
 2020-03-13 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0097-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C8782T C17747T A17858G C18060T C21614T A24694T G26929A T28144C CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT994884
 2020-03-13 2020-09-13
 United States SARS-CoV-2/human/USA/UF-25/2020
 ATTAAAGGTTT1- C8782T C17747T A17858G C18060T A24694T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

MW030214
 2020-03-13 2020-09-22
 Peru SARS-CoV-2/human/PER/covper074/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTC1- G11083T C14805T T17247C G26144T C29675- ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

NMDC60013239
 2020-03-13 2020-06-01
 China hCoV-19/Guangzhou/ID136/2020
 ATTAAAGGTTTATAC1- C241T C3037T G3566A T12436A C14408T C15324T A23403G

EPI_ISL_416478
 2020-03-14 2020-03-22
 Georgia hCoV-19/Georgia/Tb-673/2020
 ATT1- C241T C1059T C1385T C3037T T8566C C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_416523
 2020-03-14 2020-03-22
 United States hCoV-19/USA/WI-UW-03/2020
 A1- C241T C1059T C3037T T6814C G11083T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_416684 MT252737
 2020-03-14 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW146/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCA1- C5281T C6310T C8782T C17747T A17858G C18060T G27327T T28144C C29445T AAAAAAAA29896-

EPI_ISL_416686
 2020-03-14 2020-03-23
 United States hCoV-19/USA/WA-UW148/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAA1- C6285T C8782T C17747T A17858G C18060T C20555T G27364T T28144C AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_416687 MT252735
 2020-03-14 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW149/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- AACC34HTTH C8782T C17747T A17858G C18060T T27056C T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_416688 MT252740
 2020-03-14 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW150/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAA1- C8782T C17747T A17858G C18060T T28144C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_416689 MT252736
 2020-03-14 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW151/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- AACC34CTTT GTT669- C8782T G17158A C17747T A17858G C18060T T28144C GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_416707 MT252712
 2020-03-14 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW169/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCT1- C241T C1059T C3037T C14408T A23403G G25563T G29553A AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_416712 MT252709
 2020-03-14 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW174/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGC1- C8782T C17747T A17858G C18060T C23758T T28144C AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_416714 MT252710
 2020-03-14 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW176/2020
 ATTAAAGGTTTATACCTT1- C1238T C8782T C17747T A17858G C18060T T28144C T28924C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_416718 MT252716
 2020-03-14 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW180/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C8782T T14259C C17747T A17858G C18060T C23758T T28144C G29462T AA29902-

EPI_ISL_416723 MT252717
 2020-03-14 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW185/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- A1515G C9223T G11083T C14805T T17247C G26144T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_417359 MT246467
 2020-03-14 2020-03-25
 United States SARS-CoV-2/human/USA/WA-UW210/2020
 ATT1- AACC34TTTA C241T C1059T C3037T T9511C C14408T A23403G G25563T A29903-

EPI_ISL_417360 MT246468
 2020-03-14 2020-03-25
 United States SARS-CoV-2/human/USA/WA-UW211/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCT1- C8782T A14836G C17747T A17858G C18060T T28144C

EPI_ISL_417361 MT246469
 2020-03-14 2020-03-25
 United States SARS-CoV-2/human/USA/WA-UW212/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C8782T C13225T C17747T A17858G C18060T T28144C TG29867AA C29870A

EPI_ISL_417363 MT246471
 2020-03-14 2020-03-25
 United States SARS-CoV-2/human/USA/WA-UW214/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAAC19- C37T G2632T C8782T G11083T C17747T A17858G C18060T T27384C T28144C

EPI_ISL_417365 MT246473
 2020-03-14 2020-03-25
 United States SARS-CoV-2/human/USA/WA-UW216/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAA1- C140T TAG4879- C8782T C17747T A17858G C18060T C19018T T28144C A29869W A29903-

EPI_ISL_417366 MT246474
 2020-03-14 2020-03-25
 United States SARS-CoV-2/human/USA/WA-UW217/2020
 ATTAAAGGTT1- AACC34HTTH G354A G5716T C8782T C17747T A17858G C18060T T28144C AAAAAAAAA29895-

EPI_ISL_417369 MT246477
 2020-03-14 2020-03-25
 United States SARS-CoV-2/human/USA/WA-UW220/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- AACC34HTTH C6310T C8782T C17747T A17858G C18060T T28144C -29904AAAAAAAAAAAAAA

EPI_ISL_417370 MT246478
 2020-03-14 2020-03-25
 United States SARS-CoV-2/human/USA/WA-UW221/2020
 ATTAAAGGTTTAT1- C8782T C17747T A17858G C18060T G22984A T27384C T28144C A29903-

EPI_ISL_417378 MT246486
 2020-03-14 2020-03-25
 United States SARS-CoV-2/human/USA/WA-UW229/2020
 ATTAAAG1- G8C TACCTTCCCAGGTAACAAACCAACC13- C6310T C8782T C17747T A17858G C18060T G27327T T28144C AAAA29900-

EPI_ISL_417380 MT246488
 2020-03-14 2020-03-25
 United States SARS-CoV-2/human/USA/WA-UW231/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- AACC34TTTA C8782T C17747T A17858G C18060T C21575T G22988A T28144C CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_417381 MT246489
 2020-03-14 2020-03-25
 United States SARS-CoV-2/human/USA/WA-UW232/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C8782T C17747T A17858G C18060T G22984A T27384C T28144C C29870A -29904AAAAAAAAAAA

EPI_ISL_417403
 2020-03-14 2020-03-25
 Australia hCoV-19/Australia/NSW48/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C6312A G11083T C13730T C23929T C28311T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_417407
 2020-03-14 2020-03-25
 Australia hCoV-19/Australia/NSW54/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A23403G GGG28881AAC CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_417448 MT251977
 2020-03-14 2020-03-26
 United States SARS-CoV-2/human/USA/WA-UW234/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAA1- C832T C1545T C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417449 MT251978
 2020-03-14 2020-03-26
 United States SARS-CoV-2/human/USA/WA-UW235/2020
 AT1-B A4D C8782T G14229T C17747T A17858G C18060T T28144C -29904ANA

EPI_ISL_417450 MT251972
 2020-03-14 2020-03-26
 United States SARS-CoV-2/human/USA/WA-UW236/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C8782T C17747T A17858G C18060T T28144C T28229G AAAAA29899-

EPI_ISL_417451 MT251973
 2020-03-14 2020-03-26
 United States SARS-CoV-2/human/USA/WA-UW237/2020
 ATTA1- C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_417453 MT251975
 2020-03-14 2020-03-26
 United States SARS-CoV-2/human/USA/WA-UW239/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C3992T C8782T C17747T A17858G C18060T G22984A T27384C G27806A T28144C A29866G GA29868CT

EPI_ISL_417454 MT251976
 2020-03-14 2020-03-26
 United States SARS-CoV-2/human/USA/WA-UW240/2020
 AT29868-H AACC34TTTA C241T C1059T C3037T C14408T G16912T A23403G G25563T G29553A AA29902-

EPI_ISL_417455 MT251979
 2020-03-14 2020-03-26
 United States SARS-CoV-2/human/USA/WA-UW241/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCT1- C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAA29891-

EPI_ISL_417464 MT582481
 2020-03-14 2020-03-26
 Germany SARS-CoV-2/human/DEU/NRW-19/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_417465 MT582480
 2020-03-14 2020-03-26
 Germany SARS-CoV-2/human/DEU/NRW-20/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_417466 MT582479
 2020-03-14 2020-03-26
 Germany SARS-CoV-2/human/DEU/NRW-21/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_417500 MT911556
 2020-03-14 2020-03-26
 United States SARS-CoV-2/human/USA/MN56-MDH56/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G127T C8782T C14322T C17747T A17858G C18060Y A24694T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417501 MT911557
 2020-03-14 2020-03-26
 United States SARS-CoV-2/human/USA/MN57-MDH57/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G C9223Y C14805T T17247Y G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417502 MT911558
 2020-03-14 2020-03-26
 United States SARS-CoV-2/human/USA/MN58-MDH58/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037Y C14408T A23403R CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417503 MT911559
 2020-03-14 2020-03-26
 United States SARS-CoV-2/human/USA/MN59-MDH59/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4633T C8782T T15927G C17747T A17858G C18060T T21158C C26936T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417509
 2020-03-14 2020-03-27
 United States hCoV-19/USA/WI-UW-16/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C14786T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417524 MT374107
 2020-03-14 2020-03-27
 Taiwan SARS-CoV-2/human/TWN/CGMH-CGU-11/2020
 A1- C228T G1397A G9479T A9514G G11083T A19818G G26720C G28202T T28688C T28835C G29742T

EPI_ISL_417525 MT374108
 2020-03-14 2020-03-27
 Taiwan SARS-CoV-2/human/TWN/CGMH-CGU-12/2020
 AT1- C241T C3037T C14408T A23403G G23856T GGG28881AAC

EPI_ISL_417549
 2020-03-14 2020-03-27
 Iceland hCoV-19/Iceland/171/2020
 C241T C3037T A10323G C14408T A20268G A23403G

EPI_ISL_417655
 2020-03-14 2020-03-27
 Iceland hCoV-19/Iceland/326/2020
 A1321C G11083T C14805T T17247C G26144T

EPI_ISL_417659
 2020-03-14 2020-03-27
 Iceland hCoV-19/Iceland/330/2020
 A2480G C2558T C11074T G11083T C14805T G26144T

EPI_ISL_417663
 2020-03-14 2020-03-27
 Iceland hCoV-19/Iceland/334/2020
 C241T C3037T C14408T C19170T G19509A A23403G GGG28881AAC

EPI_ISL_417665
 2020-03-14 2020-03-27
 Iceland hCoV-19/Iceland/336/2020
 C241T C1059T A2018G C3037T C14408T T21995C A23403G G25563T

EPI_ISL_417725
 2020-03-14 2020-03-27
 Iceland hCoV-19/Iceland/161/2020
 G61T C241T C1059T C3037T G6266A C14408T A23403G G25563T

EPI_ISL_417758
 2020-03-14 2020-03-27
 Iceland hCoV-19/Iceland/164/2020
 C241T C3037T C14408T A23403G A26530G C28775T G29737A

EPI_ISL_417772
 2020-03-14 2020-03-27
 Iceland hCoV-19/Iceland/162/2020
 C5142T G11083T C14805T T17247C G26144T

EPI_ISL_417775
 2020-03-14 2020-03-27
 Iceland hCoV-19/Iceland/163/2020
 C241T C3037T C14408T A23403G A26530G G29737A

EPI_ISL_417812
 2020-03-14 2020-03-27
 Iceland hCoV-19/Iceland/176/2020
 C151T C241T C3037T C14408T A23403G A26530G

EPI_ISL_418041 MT259248
 2020-03-14 2020-03-28
 United States SARS-CoV-2/human/USA/CT-UW256/2020
 ATTAAAGGTTTATAC1- AACC34HTTT C241T AAGTCATTT686- C1059T C3037T C14408T A23403G G25563T A26433G

EPI_ISL_418043 MT259250
 2020-03-14 2020-03-28
 United States SARS-CoV-2/human/USA/WA-UW258/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTA1- C241T C313T C3037T C14408T A23403G GGG28881AAC AAAAA29899-

EPI_ISL_418044 MT259251
 2020-03-14 2020-03-28
 United States SARS-CoV-2/human/USA/WA-UW259/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAAC19- C37T C241T C1059T C3037T C14408T A23403G G25563T C29870M -29904AAAAAAAAAAAAA

EPI_ISL_418045 MT259252
 2020-03-14 2020-03-28
 United States SARS-CoV-2/human/USA/WA-UW260/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAA1- T490A C3177T C8782T T18736C G19684T C24034T T26729C C27635T C27999T G28077C T28144C A29700G AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_418055 MT259262
 2020-03-14 2020-03-28
 United States SARS-CoV-2/human/USA/WA-UW270/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTG1- C8782T C17747T A17858G C18060T C21646T G22988A T28144C AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_418060 MT259267
 2020-03-14 2020-03-28
 United States SARS-CoV-2/human/USA/WA-UW275/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- AACC34TTTA T6691C C7843T G11083T A13768G C14805T A15869T T17247C C17639T G19542T G26144T C28915T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_418062 MT259269
 2020-03-14 2020-03-28
 United States SARS-CoV-2/human/USA/WA-UW277/2020
 ATTAAA1- AAC34TTT A6424C C8782T G11042T C17747T A17858G C18060T T22207C A24694T T28144C A28283G AAA29901-

EPI_ISL_418066
 2020-03-14 2020-03-28
 United States hCoV-19/USA/WA-UW281/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- G8602A C8782T -10255GGTACAGGCTGGTAATGTTCAACTCAGGGTTATTGGACATTCTATGCAAAATTGTGTACTTAAGCTTAGGGTTGATACAGCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN A10323G C17747T A17858G C18060T G26152A T28144C -29904AAAAANA

EPI_ISL_418069 MT259274
 2020-03-14 2020-03-28
 United States SARS-CoV-2/human/USA/WA-UW284/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C8782T C17747T A17858G C18060T T28144C G28376A AAAAAAAA29896-

EPI_ISL_418070 MT259275
 2020-03-14 2020-03-28
 United States SARS-CoV-2/human/USA/WA-UW285/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- AC35TT C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_418144
 2020-03-14 2020-03-28
 United Kingdom hCoV-19/Wales/PHWC-240E8/2020
 A1- G1440A G2891A C25669T G28851T

EPI_ISL_418147
 2020-03-14 2020-03-28
 United Kingdom hCoV-19/Wales/PHWC-24121/2020
 AT1- G1440A G2891A C25669T G28851T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_418196
 2020-03-14 2020-03-28
 United States hCoV-19/USA/NY-NYUMC11/2020
 C241T C1059T C3037T C14408T A23403G G25563T G27390C

EPI_ISL_418234
 2020-03-14 2020-03-29
 France hCoV-19/France/IDF2534/2020
 C241T C3037T T8156G C14408T C15324T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_418255
 2020-03-14 2020-03-14
 Italy hCoV-19/Italy/TE4925/2020
 C48M C241T C3037T C6573T C14408T G22363T A23403G TC26532WY AAAA29900-

EPI_ISL_418256
 2020-03-14 2020-03-14
 Italy hCoV-19/Italy/TE4880/2020
 T42Y C241T C3037T C14408T A23403G GGG28881AAC AAAAA29899-

EPI_ISL_418258
 2020-03-14 2020-03-14
 Italy hCoV-19/Italy/TE4953/2020
 C48M C241T C3037T C14408T A23403G GGG28881AAC AA29902-

EPI_ISL_418323
 2020-03-14 2020-03-14
 Canada hCoV-19/Canada/ON_PHL3919/2020
 A1- G1397A G11083T T22032C T28688C G29742T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418335
 2020-03-14 2020-03-14
 Canada hCoV-19/Canada/ON_PHL4464/2020
 A1- T8767C C8782T T10771C C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418373
 2020-03-14 2020-03-14
 Canada hCoV-19/Canada/ON_PHL7590/2020
 A1- C241T C3037T C14408T C19170T G19509A A23403G G28077T GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418401
 2020-03-14 2020-03-14
 Finland hCoV-19/Finland/14M12/2020
 C241T C3037T C14408T C18877T A23403G G24197T G25563T C26735T GTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29810-

EPI_ISL_418402
 2020-03-14 2020-03-14
 Finland hCoV-19/Finland/14M13/2020
 C241T C3037T C14408T C21843T A23403G C23575T G23587C AAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29813-

EPI_ISL_418403
 2020-03-14 2020-03-14
 Finland hCoV-19/Finland/14M14/2020
 C241T C3037T C14408T A23403G C23575T G23587C AATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29814-

EPI_ISL_418404
 2020-03-14 2020-03-14
 Finland hCoV-19/Finland/14M16/2020
 C241T C3037T C14408T C18877T A23403G G24197T G25563T C26735T AAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29812-

EPI_ISL_418406
 2020-03-14 2020-03-14
 Finland hCoV-19/Finland/14M26/2020
 C241T C3037T C14408T C18877T A23403G G24197T G25563T C26735T AATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29814-

EPI_ISL_418410
 2020-03-14 2020-03-14
 Finland hCoV-19/Finland/14M77/2020
 C241T C3037T C14408T A20268G A23403G TGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29809-

EPI_ISL_418411
 2020-03-14 2020-03-14
 Finland hCoV-19/Finland/14M82/2020
 T514C ATG1605- C14913T C17410T C18647T A21137G G25440T GTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29808-

EPI_ISL_418626
 2020-03-14 2020-03-30
 Belgium hCoV-19/Belgium/ULG-7242/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C14408T G19518T A23403G G28845T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_418628
 2020-03-14 2020-03-30
 Belgium hCoV-19/Belgium/ULG-7134/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_418630
 2020-03-14 2020-03-30
 Belgium hCoV-19/Belgium/ULG-7729/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15277T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_418801
 2020-03-14 2020-03-31
 Australia hCoV-19/Australia/QLDID923/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C3037T C14408T A23403G A26530G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_418871 MT263386
 2020-03-14 2020-03-30
 United States SARS-CoV-2/human/USA/CT-UW303/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTG1- C2676T C8782T A22606T T28144C G28878A G29742A CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_418878 MT263392
 2020-03-14 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW310/2020
 ATTAAAGGTTTATACCTTCC1- G23C CT84TC GG90-C C241T C1059T C3037T C14408T G16912T A23403G G25563T G29553A AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_418880 MT263394
 2020-03-14 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW313/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACG1- C241T C1059T C3037T C14408T A23403G G25563T G29553A AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_418881 MT263395
 2020-03-14 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW314/2020
 ATTAAA1- C8782T G11083T C17747T A17858G C18060T T28144C T29410C G29557T -29904AAAAAAA

EPI_ISL_418887 MT263400
 2020-03-14 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW320/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- G8602A C8782T C17747T A17858G C18060T G26152A T28144C

EPI_ISL_418895 MT263408
 2020-03-14 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW328/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCT1- C241T C619T C1059T C3037T C14408T A14912G A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_418898 MT263411
 2020-03-14 2020-03-30
 United States SARS-CoV-2/human/USA/CT-UW331/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCT1- C241T C3037T C9534A C14408T C18877T A23403G G25563T GC28968CT -29904AAAAAAAAAAAAAA

EPI_ISL_418917 MT263430
 2020-03-14 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW350/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCT1- C8782T C17747T A17858G C18060T T28144C C28708T A29869T

EPI_ISL_418924 MT263437
 2020-03-14 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW357/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C1059T C3037T C14408T A23403G G25563T G29553A A29903-

EPI_ISL_418926 MT263439
 2020-03-14 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW359/2020
 ATTAAAGGTTTATAC1- CCCAGGTAACAAACCAA19- CC36TH C241T C1059T C3037T C12809T C14408T A23403G G25563T AAAAAAAA29896-

EPI_ISL_418964 MT334540
 2020-03-14 2020-03-31
 United States SARS-CoV-2/human/USA/UT-00022/2020
 AT1- C241T C1059T C1887T C3037T C14408T A17615G A23403G G24794T G25563T

EPI_ISL_419388 MT911560
 2020-03-14 2020-04-02
 United States SARS-CoV-2/human/USA/MN60-MDH60/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T T20406W A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_419390 MT911561
 2020-03-14 2020-04-02
 United States SARS-CoV-2/human/USA/MN62-MDH62/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T A6051C C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_419391 MT911562
 2020-03-14 2020-04-02
 United States SARS-CoV-2/human/USA/MN63-MDH63/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17747T A17858G C18060T A24694T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_419393 MT911564
 2020-03-14 2020-04-02
 United States SARS-CoV-2/human/USA/MN65-MDH65/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12970T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_419394 MT911565
 2020-03-14 2020-04-02
 United States SARS-CoV-2/human/USA/MN66-MDH66/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_419395 MT911566
 2020-03-14 2020-04-02
 United States SARS-CoV-2/human/USA/MN67-MDH67/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11596T C14408T A23403G A26530G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_419396 MT911567
 2020-03-14 2020-04-02
 United States SARS-CoV-2/human/USA/MN68-MDH68/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A19492G A23403G GGG28881AAC C29708Y G29810A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_419397 MT911568
 2020-03-14 2020-04-02
 United States SARS-CoV-2/human/USA/MN69-MDH69/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C14408T G19101T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837T

EPI_ISL_419541 MT582476
 2020-03-14 2020-04-02
 Germany SARS-CoV-2/human/DEU/NRW-24/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_419568
 2020-03-14 2020-04-02
 Luxembourg hCoV-19/Luxembourg/LNS0756270/2020
 C241T C3037T C14408T C15324T C16887T A23403G GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_419579
 2020-03-14 2020-04-02
 Luxembourg hCoV-19/Luxembourg/LNS2886370/2020
 C241T C3037T C14408T C15324T C16887T A23362R A23403G GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_419586
 2020-03-14 2020-04-02
 Luxembourg hCoV-19/Luxembourg/LNS4134806/2020
 C241T C1059T C3037T C4320T C14408T A23403G G25563T C25688T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_419607
 2020-03-14 2020-04-02
 Luxembourg hCoV-19/Luxembourg/LNS9982497/2020
 C241T C1059T C3037T C4320T C14408T A23403G G25563T C25688T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_419785 MT450985
 2020-03-14 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC73/2020
 ATTAAAGGTTTA1- T490A C3177T C8782T T18736C G19684T C24034T T26729C C27635T G28077C T28144C A29700G

EPI_ISL_419789 MT450988
 2020-03-14 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC77/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- T490A C3177T C8782T T18736C G19684T C24034T T26729C C27635T G28077C T28144C A29700G

EPI_ISL_419790
 2020-03-14 2020-04-03
 Australia hCoV-19/Australia/VIC78/2020
 ATTAAAGG1- ATG1605- C17898T G28237T A29903-

EPI_ISL_419791 MT450989
 2020-03-14 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC79/2020
 ATTAAAGGTTTATACCT1- C2558T A10081R G11083T C14805T G26144T

EPI_ISL_419792 MT450990
 2020-03-14 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC80/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C2558T G11083T C14805T A21137G G26144T

EPI_ISL_419793 MT450991
 2020-03-14 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC81/2020
 ATTAAAGGTTT1- C2558T G11083T C14724Y C14805T G26144T

EPI_ISL_419794 MT450992
 2020-03-14 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC82/2020
 ATTAAAGGTTTATACC1- T211C C2558T G11083T C14805T G23984A G26144T

EPI_ISL_419799 MT450993
 2020-03-14 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC83/2020
 A1- G11083T C14805T T17247C C23244T G26144T GTACGATCGAGT29747-

EPI_ISL_419803 MT450994
 2020-03-14 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC84/2020
 ATTAAAGGT1- A1515G C9223T G11083T C14805T T17247C T23335A G26144T

EPI_ISL_420531
 2020-03-14 2020-04-06
 Australia hCoV-19/Australia/WA01/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1714T C3037T C14408T A23403G C25350T ATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29850-

EPI_ISL_420533
 2020-03-14 2020-04-06
 Australia hCoV-19/Australia/WA03/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1059T C3037T C14408T A23403G G25563T GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_420538
 2020-03-14 2020-04-06
 Australia hCoV-19/Australia/WA09/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- G4436A C8782T C17747T A17858G C18060T A24694T T28144C GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_420539
 2020-03-14 2020-04-06
 Australia hCoV-19/Australia/WA10/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- A1079C G1397A T7225C C9319T G11083T C19862T T27384C T28688C G29742T GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_420903
 2020-03-14 2020-04-07
 Germany hCoV-19/Germany/BAV-V2011395/2020
 A2480G C2558T G11083T A11090T C14805T G17338T C20429T G26144T

EPI_ISL_421191
 2020-03-14 2020-04-07
 Belgium hCoV-19/Belgium/ULG-10013/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_421192
 2020-03-14 2020-04-07
 Belgium hCoV-19/Belgium/ULG-10014/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_421193
 2020-03-14 2020-04-07
 Belgium hCoV-19/Belgium/ULG-10015/2020
 C241T C3037T C4704T C14408T A23403G C29167T

EPI_ISL_421194
 2020-03-14 2020-04-07
 Belgium hCoV-19/Belgium/ULG-10016/2020
 C241T C1059T C3037T C14408T A23403G C23679T G25135T G25563T G28857A

EPI_ISL_421222
 2020-03-14 2020-04-07
 China hCoV-19/Hangzhou/HZCDC6706/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_421346
 2020-03-14 2020-04-07
 United States hCoV-19/USA/WY-WYPHL004/2020
 C241T C1059T C3037T G10870T C14408T A23403G G25563T

EPI_ISL_421352 MT370919
 2020-03-14 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08123/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C3037T G10265A C14408T A23403G GGG28881AAC GTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29828-

EPI_ISL_421353 MT370839
 2020-03-14 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08124/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C3037T G10265A C14408T A23403G GGG28881AAC AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_421355 MT370854
 2020-03-14 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08127/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_421365 MT370857
 2020-03-14 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08148/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C2676T C8782T A22606T C23525T T28144C G28878A G29742A AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_421504
 2020-03-14 2020-04-08
 France hCoV-19/France/IDF2536/2020
 C241T G675A C3037T C6539T C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421548
 2020-03-14 2020-04-08
 United States hCoV-19/USA/WY-WYPHL011/2020
 C8782T G15199A C17747T A17858G C18060T A27525G T28144C

EPI_ISL_421549
 2020-03-14 2020-04-08
 United States hCoV-19/USA/WY-WYPHL012/2020
 C8782T G15199A C17747T A17858G C18060T A27525G T28144C

EPI_ISL_422411
 2020-03-14 2020-04-10
 Taiwan hCoV-19/Taiwan/NTU08/2020
 C241T C3037T C14408T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_422412
 2020-03-14 2020-04-10
 Taiwan hCoV-19/Taiwan/NTU09/2020
 C241T C1059T C3037T C14408T C19524Y A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_422797 LR878130
 2020-03-14 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_36/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422798 LR878124
 2020-03-14 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_37/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422812 LR878146
 2020-03-14 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_51/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422813 LR878134
 2020-03-14 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_52/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C8293A C11109T C14408T A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_424173 MT326181
 2020-03-14 2020-04-12
 United States SARS-CoV-2/human/USA/IL-UW-1311/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAG1- C8782T C17747T A17858G C18060T T28144C AA29902-

EPI_ISL_425473
 2020-03-14 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10DF50/2020
 A1515G C9223T G11083T C14697T C14805T T17247C C19017T G26144T

EPI_ISL_425474
 2020-03-14 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10DF6F/2020
 T514C ATG1605- C17410T

EPI_ISL_425475
 2020-03-14 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10DF7E/2020
 C2558T G11083T C14805T C15960T G20275T G26144T

EPI_ISL_425476
 2020-03-14 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10DF9C/2020
 T514C ATG1605- C17410T

EPI_ISL_425477
 2020-03-14 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10DFAB/2020
 ATG1605- C20270T

EPI_ISL_425647
 2020-03-14 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR100/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425648
 2020-03-14 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR101/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C2558T C6040T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425656
 2020-03-14 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR110/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T C28814G GGG28881AAC C29784T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425668
 2020-03-14 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR125/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C988T G11083T C14805T T17247C G26144T C29585T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425780
 2020-03-14 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR52/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C23422T T23849C C25667T C29686T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425782
 2020-03-14 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR53/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5144T C14408T A23403G C23422T T23849C C29686T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425816
 2020-03-14 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR96/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C9430T C12710T T14313C C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425823
 2020-03-14 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB017/2020
 C241T C1059T C1076T C3037T C14408T A23403G

EPI_ISL_425826
 2020-03-14 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB020/2020
 C241T C3037T C14408T A23403G

EPI_ISL_425849
 2020-03-14 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB045/2020
 

EPI_ISL_426296
 2020-03-14 2020-04-15
 United States hCoV-19/USA/NY-Wadsworth-16080-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T C22120T A23403G C23575T G23587C TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426310
 2020-03-14 2020-04-15
 United States hCoV-19/USA/NY-Wadsworth-15616-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426517
 2020-03-14 2020-04-17
 United States hCoV-19/USA/AZ-TG268913/2020
 C8782T A12334T C17747T A17858G C18060T C20132T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426519
 2020-03-14 2020-04-17
 United States hCoV-19/USA/AZ-TG268917/2020
 C241T C1059T C3037T C14408T C21575T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426528
 2020-03-14 2020-04-17
 United States hCoV-19/USA/AZ-TG269856/2020
 C241T C3037T C14408T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_427392
 2020-03-14 2020-04-18
 Taiwan hCoV-19/Taiwan/TSGH-05/2020
 C241T C3037T C14408T A23403G GGG28881AAC -29894AAAAAAAAT

EPI_ISL_427544
 2020-03-14 2020-04-19
 United States hCoV-19/USA/NY-WCMP9A05P/2020
 C8782T T10771C C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871RG

EPI_ISL_427545
 2020-03-14 2020-04-19
 United States hCoV-19/USA/NY-WCMP9A08P/2020
 C241T C3037T C14408T C18877T A23403G G25563T C27603A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871RG

EPI_ISL_427546
 2020-03-14 2020-04-19
 United States hCoV-19/USA/NY-WCMP9B05P/2020
 AT1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871RG

EPI_ISL_427547
 2020-03-14 2020-04-19
 United States hCoV-19/USA/NY-WCMP9B06P/2020
 AT1- C241T C1059T C1917T C3037T C14408T G20005A A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871RG

EPI_ISL_427548
 2020-03-14 2020-04-19
 United States hCoV-19/USA/NY-WCMP9B08P/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871R

EPI_ISL_427549
 2020-03-14 2020-04-19
 United States hCoV-19/USA/NY-WCMP9B09P/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871RG

EPI_ISL_427550
 2020-03-14 2020-04-19
 United States hCoV-19/USA/NY-WCMP9D03P/2020
 A1- C241T C1059T A2015R C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871RG

EPI_ISL_427551
 2020-03-14 2020-04-19
 United States hCoV-19/USA/NY-WCMP9E04P/2020
 ATTAAAGGTT1- C241T C1059T C3037T C6896T C14408T A23403G G25483A G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871RG

EPI_ISL_427552
 2020-03-14 2020-04-19
 United States hCoV-19/USA/NY-WCMP9G04P/2020
 C241T C3037T C14408T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871RG

EPI_ISL_428725
 2020-03-14 2020-04-21
 United States hCoV-19/USA/WI-UW-251/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13517T C14408T A23403G C25350T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_429299
 2020-03-14 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH43/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429812
 2020-03-14 2020-04-24
 Canada hCoV-19/Canada/NS_30/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C11224T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_429816
 2020-03-14 2020-04-24
 Canada hCoV-19/Canada/NB_35/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G C25433T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_429817
 2020-03-14 2020-04-24
 Canada hCoV-19/Canada/MB_36/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_429820
 2020-03-14 2020-04-24
 Canada hCoV-19/Canada/MB_39/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_430155 MT627634
 2020-03-14 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S301/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_430183 MT632579
 2020-03-14 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S146/2020
 C241T C1059T C3037T C14408T A23403G G25563T G29553A

EPI_ISL_430184 MT632500
 2020-03-14 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S147/2020
 C1238T C8782T C17747T A17858G C18060T T28144C T28924C

EPI_ISL_430186 MT632547
 2020-03-14 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S149/2020
 A1515G C9223T G11083T C14805T T17247C G26144T

EPI_ISL_430187 MT632624
 2020-03-14 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S150/2020
 C8782T T14259C C17747T A17858G C18060T C23758T T28144C G29462T

EPI_ISL_430743
 2020-03-14 2020-04-27
 China hCoV-19/env/Beijing/BJ2452/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4255T G8653T C14408T A23403G A26507T A26530G G27746T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_430744
 2020-03-14 2020-04-27
 China hCoV-19/env/Beijing/BJ2454/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4255T G8653T C14408T A23403G A26507T A26530G G27746T CGAT29750- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_430745
 2020-03-14 2020-04-27
 China hCoV-19/env/Beijing/BJ2456/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C3037T G4255T G8653T C14408T G19566T A23403G A26507T A26530G GTCTTGTAGGCTTGATGTGGCTCAGCTACTTCATTGCTTCTTTCAGACTG26779- G27746T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_430746
 2020-03-14 2020-04-27
 China hCoV-19/env/Beijing/BJ2460/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4255T G8653T C14408T A23403G A26507T A26530G G27746T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_434478
 2020-03-14 2020-04-29
 Greece hCoV-19/Greece/142/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGG28881AAC TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_434588
 2020-03-14 2020-04-30
 United States hCoV-19/USA/MD-HP00038/2020
 C241T C337T C379A C1059T C3037T C14408T A23403G G25563T

EPI_ISL_434683
 2020-03-14 2020-05-01
 United States hCoV-19/USA/MD-HP00020/2020
 C241T C3037T T9172C A10948G C14408T C16658T A23403G G26730T GGG28881AAC

EPI_ISL_434688
 2020-03-14 2020-05-01
 United States hCoV-19/USA/DC-HP00007/2020
 G204T C241T C1059T C3037T G8676T C14408T A23403G G25563T

EPI_ISL_434701
 2020-03-14 2020-05-01
 Thailand hCoV-19/Thailand/NIH-2472/2020
 ATTAAAGGTTTATACCT1- A895G C2942T G4390T C8782T C9598T G20134T G24047A G27877T T28144C TGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29840-

EPI_ISL_434703
 2020-03-14 2020-05-01
 Thailand hCoV-19/Thailand/NIH-2489/2020
 ATTAAAGGTTTATACCTT1- A895G C2942T G4390T C8782T C9598T G20134T G24047A G27877T T28144C GTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29828-

EPI_ISL_434724
 2020-03-14 2020-05-01
 United States hCoV-19/USA/TX-HMH014/2020
 C8782T T9477A C11396T C14805T C22350T G25979T T28144C C28657T C28863T

EPI_ISL_435120
 2020-03-14 2020-05-03
 United Arab Emirates hCoV-19/United Arab Emirates/L068/2020
 C884T G1397A G8653T -11075TTT G11083T A19073G G27915T T28688C C29077T G29742T

EPI_ISL_435122
 2020-03-14 2020-05-03
 United Arab Emirates hCoV-19/United Arab Emirates/L0231/2020
 C884T G1397A G8653T A19073G G27915T T28688C C28868T C29077T G29742T

EPI_ISL_435142
 2020-03-14 2020-05-03
 United Arab Emirates hCoV-19/United Arab Emirates/L9766/2020
 G520T C14636T

EPI_ISL_436219
 2020-03-14 2020-05-06
 Spain hCoV-19/Spain/Valencia124/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G11083T G26144T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_436220
 2020-03-14 2020-05-06
 Spain hCoV-19/Spain/Valencia125/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_436223
 2020-03-14 2020-05-06
 Spain hCoV-19/Spain/Valencia128/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_437229
 2020-03-14 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0030/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_437251
 2020-03-14 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0052/2020
 C241T C3037T C14408T A23403G C27046T C28344A GGG28881AAC

EPI_ISL_437875 MT459836
 2020-03-14 2020-05-11
 Greece SARS-CoV-2/human/GRC/152_33705/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T G20002T A23403G T23927G C28657T GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_437878 MT459876
 2020-03-14 2020-05-11
 Greece SARS-CoV-2/human/GRC/208_33922/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGG28881AAC C28887T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_437880 MT459878
 2020-03-14 2020-05-11
 Greece SARS-CoV-2/human/GRC/210_33942/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C9039T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_437881 MT459880
 2020-03-14 2020-05-11
 Greece SARS-CoV-2/human/GRC/212_34023/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_437902 MT459911
 2020-03-14 2020-05-11
 Greece SARS-CoV-2/human/GRC/153_33892/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G G23868T GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_438034
 2020-03-14 2020-05-12
 Austria hCoV-19/Austria/CeMM0193/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_438035
 2020-03-14 2020-05-12
 Austria hCoV-19/Austria/CeMM0194/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAA29895-

EPI_ISL_438036
 2020-03-14 2020-05-12
 Austria hCoV-19/Austria/CeMM0195/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_438037
 2020-03-14 2020-05-12
 Austria hCoV-19/Austria/CeMM0196/2020
 C241T C1059T C3037T C14408T A23403G G25563T G27375K TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_438038
 2020-03-14 2020-05-12
 Austria hCoV-19/Austria/CeMM0197/2020
 C241T C3037T G9526T G12832A C14408T T22521K A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_438039
 2020-03-14 2020-05-12
 Austria hCoV-19/Austria/CeMM0198/2020
 C241T C3037T C9665Y C14408T A23403G C27046T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_438223
 2020-03-14 2020-05-12
 United States hCoV-19/USA/DC-HP00026/2020
 C241T C2416T C3037T C14408T A23403G G25563T G26233T

EPI_ISL_440380
 2020-03-14 2020-05-12
 United Kingdom hCoV-19/England/CAMB-74FBF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T10936Y C14408T A23403G T25202K GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_440403
 2020-03-14 2020-05-12
 United Kingdom hCoV-19/England/CAMB-7525B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1348Y ATG1605- A3046R T4917Y T18699K C21575Y T25202K A29771G A29903-

EPI_ISL_441411
 2020-03-14 2020-05-12
 United Kingdom hCoV-19/Northern Ireland/NIRE-1023E6/2020
 ATT1- C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_444533
 2020-03-14 2020-05-14
 United States hCoV-19/USA/IL-NM023/2020
 C241T C1059T C3037T C3717T C14408T A23403G G25563T

EPI_ISL_444892
 2020-03-14 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-761/2020
 C241T C1059T C3037T T8788C C14408T A23403G G25563T G26951A

EPI_ISL_445097
 2020-03-14 2020-05-15
 United States hCoV-19/USA/CA-SR0098/2020
 C241T C1059T A2018G C3037T C14214T C14408T A23403G G25563T

EPI_ISL_445098
 2020-03-14 2020-05-15
 United States hCoV-19/USA/CA-SR0099/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_445102
 2020-03-14 2020-05-15
 United States hCoV-19/USA/CA-SR0106/2020
 C8782T C17747T A17858G C18060T C21614T A24694T C27223T T28144C C29870A

EPI_ISL_445268
 2020-03-14 2020-05-15
 Chile hCoV-19/Chile/Punta_Arenas_1/2020
 T2C AAAG4TGCT A14G C241T C3037T C14408T A23403G C25350T GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_445270
 2020-03-14 2020-05-15
 Chile hCoV-19/Chile/Temuco_1/2020
 ATTAAAGGTTTA1- C241T C3037T G10265A C14408T A23403G GGG28881AAC G29398T ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_445285
 2020-03-14 2020-05-15
 Chile hCoV-19/Chile/Valparaiso_2/2020
 TT2-G A5C C241T C3037T A12506R C14408T C18877T A23403G G25563T TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_445303
 2020-03-14 2020-05-15
 Chile hCoV-19/Chile/Santiago_24/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- G11083T A12506R C14805T T17247C C22477Y G26144T GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_447089 MT506532
 2020-03-14 2020-05-16
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20292/2020
 C241T C1059T C3037T C14408T C16428T A23403G G25563T AAAAAAA29897-

EPI_ISL_447093 MT506534
 2020-03-14 2020-05-16
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20296/2020
 A6459R GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_447107 MT506533
 2020-03-14 2020-05-16
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20310/2020
 AAA29901-

EPI_ISL_447640 MT459879
 2020-03-14 2020-05-11
 Greece SARS-CoV-2/human/GRC/211_34005/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_450103
 2020-03-14 2020-05-20
 United States hCoV-19/USA/NY-PV09425/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T C1059T C1917T C3037T C14408T A23403G G25563T GTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29759-

EPI_ISL_450117
 2020-03-14 2020-05-20
 United States hCoV-19/USA/NY-PV09440/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTG1- C241T C1059T C3037T C14408T A23403G G25563T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_450197
 2020-03-14 2020-05-20
 Thailand hCoV-19/Thailand/Nonthaburi_2520/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_450233
 2020-03-14 2020-05-20
 United States hCoV-19/USA/CA-UCSF-UC41/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTC1- C8090T G11083T C14805T T17247C G26144T ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_450572 MT506201
 2020-03-14 2020-05-21
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20361/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_450576 MT506205
 2020-03-14 2020-05-21
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20365/2020
 C241T C1059T C3037T C14408T A23403G G25563T AA29902-

EPI_ISL_450795 MT507273
 2020-03-14 2020-05-22
 Jamaica SARS-CoV-2/human/JAM/JM-CDC-5836/2020
 A2480G C2558T G11083T C14805T G26144T G28321A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_451692 LR824254
 2020-03-14 2020-05-25
 Switzerland 100108
 C241T C1059T C3037T C14408T C16655Y A23403G G25563T G29422K

EPI_ISL_451693 LR824256
 2020-03-14 2020-05-25
 Switzerland 100109
 C241T C3037T C14408T C15324T A16474G C16887T A23403G

EPI_ISL_451961
 2020-03-14 2020-05-26
 Italy hCoV-19/Italy/IZSPB_CL1/2020
 C241T C3037T C14408T C19687T A23403G C26882T AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_452287
 2020-03-14 2020-05-27
 United States hCoV-19/USA/MI-MDHHS-SC20413/2020
 T25Y C241T C313T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_452309
 2020-03-14 2020-05-27
 United States hCoV-19/USA/MI-MDHHS-SC20435/2020
 C241T C1059T C1380T C3037T C14408T A23403G G25563T

EPI_ISL_452316
 2020-03-14 2020-05-27
 United States hCoV-19/USA/MI-MDHHS-SC20442/2020
 C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T

EPI_ISL_452523
 2020-03-14 2020-05-27
 Spain hCoV-19/Spain/COV001378/2020
 C8782T C26088T T28144C

EPI_ISL_454017
 2020-03-14 2020-05-28
 Portugal hCoV-19/Portugal/PT0301/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454019
 2020-03-14 2020-05-28
 Portugal hCoV-19/Portugal/PT0303/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454020
 2020-03-14 2020-05-28
 Portugal hCoV-19/Portugal/PT0304/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- C241T C3037T C14408T A23403G C27509T GGG28881AAC CGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29754-

EPI_ISL_454021
 2020-03-14 2020-05-28
 Portugal hCoV-19/Portugal/PT0305/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G246T C3037T C14408T A23403G G24098T G27703T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454022
 2020-03-14 2020-05-28
 Portugal hCoV-19/Portugal/PT0306/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G246T C3037T C14408T A23403G G24098T C25714T G27703T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454023
 2020-03-14 2020-05-28
 Portugal hCoV-19/Portugal/PT0307/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- C241T C3037T C14408T A23403G GGG28881AAC CGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29754-

EPI_ISL_454025
 2020-03-14 2020-05-28
 Portugal hCoV-19/Portugal/PT0309/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- C241T C3037T G4432T C14408T A23403G GGG28881AAC CGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29754-

EPI_ISL_454026
 2020-03-14 2020-05-28
 Portugal hCoV-19/Portugal/PT0310/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3140T G4300T C14408T G18498T C21575T A23403G G24077T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454032
 2020-03-14 2020-05-28
 Portugal hCoV-19/Portugal/PT0316/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- C241T C3037T C14408T A23403G GGG28881AAC CGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29754-

EPI_ISL_454224
 2020-03-14 2020-05-28
 Portugal hCoV-19/Portugal/PT0500/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C8109T C14408T G16744A A20268G C20762T G21190A A23403G T26301G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454328
 2020-03-14 2020-05-28
 Portugal hCoV-19/Portugal/PT0605/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C4002T G10097A C13536T C14408T C20368A A23403G C23731T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454331
 2020-03-14 2020-05-28
 Portugal hCoV-19/Portugal/PT0608/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C4002T G10097A C13536T C14408T C20368A A23403G C23731T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454332
 2020-03-14 2020-05-28
 Portugal hCoV-19/Portugal/PT0609/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A20268G A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454333
 2020-03-14 2020-05-28
 Portugal hCoV-19/Portugal/PT0610/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A20268G A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454760
 2020-03-14 2020-05-29
 Netherlands hCoV-19/Netherlands/NoordHolland_10011/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C850T C6449T C8782T G13617T C26088T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_454761
 2020-03-14 2020-05-29
 Netherlands hCoV-19/Netherlands/Utrecht_10012/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTT1- T514C ATG1605- G6662A C16762T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_454962
 2020-03-14 2020-05-29
 China hCoV-19/Wuhan/HB-WH4-213/2020
 C4683T C6286T G26144T

EPI_ISL_454978
 2020-03-14 2020-05-29
 China hCoV-19/Wuhan/HB-WH5-237/2020
 G28857A

EPI_ISL_454982
 2020-03-14 2020-05-29
 China hCoV-19/Wuhan/HB-WH6-242/2020
 G26144T

EPI_ISL_455347
 2020-03-14 2020-05-29
 Spain hCoV-19/Spain/Melilla202449/2020
 ATTAAAGGTTTATACC1- C241T C3037T C4058T C14408T A20268G A23403G G28881T TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_455348
 2020-03-14 2020-05-29
 Spain hCoV-19/Spain/Melilla202452/2020
 ATTAAAGGTTTATACC1- C241T C3037T C5884T C14408T A18952G A20268G A23403G TAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29823-

EPI_ISL_455438
 2020-03-14 2020-05-29
 Mexico hCoV-19/Mexico/CDMX-InDRE_14/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T C14408T A20268G A23403G G25183A CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_455455
 2020-03-14 2020-05-29
 Mexico hCoV-19/Mexico/CDMX-InDRE_17/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T C14408T A23403G C27046T GGG28881AAC G29224T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_455585
 2020-03-14 2020-06-01
 Thailand hCoV-19/Thailand/Bangkok_2974/2020
 A895G C2942T G4390T C8782T C9598T C11074T G20134T G24047A T28144C AAAAAAAAAAAA29892-

EPI_ISL_455605
 2020-03-14 2020-06-01
 Thailand hCoV-19/Thailand/Nonthaburi_2472/2020
 A895G C2942T G4390T C8782T C9598T G20134T G24047A G27877T T28144C AAAAAAAAAAAA29892-

EPI_ISL_457732
 2020-03-14 2020-06-02
 Italy hCoV-19/Italy/4870/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_457768 MT646053
 2020-03-14 2020-06-02
 United States SARS-CoV-2/human/USA/MD-HP00113/2020
 T490A C3177T C6040T C8782T G12478A T17531C T18736C C24034T A25442G T26729C G28077C T28144C C28896G A29700G

EPI_ISL_457974
 2020-03-14 2020-06-02
 Oman hCoV-19/Oman/RESP-20-2282/2020
 C241T C3037T T10561C C14408T C15324T A23403G

EPI_ISL_460060
 2020-03-14 2020-06-05
 United States hCoV-19/USA/MN-MDH-70/2020
 AT1- C241T C313T C3037T C14408T A23403G GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460061
 2020-03-14 2020-06-05
 United States hCoV-19/USA/MN-MDH-71/2020
 AT1-G C241T C3037T A8072G C13384T C14408T A23403G GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_460067
 2020-03-14 2020-06-05
 United States hCoV-19/USA/MN-MDH-83/2020
 ATTA1- T17W C241T C1059T C3037T C14408T A23403G G25563T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_460074
 2020-03-14 2020-06-05
 United States hCoV-19/USA/MN-MDH-93/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- A38R C241T C313T C3037T C14408T -18562A C21005T A23403G -25263T GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_460347 MT520422
 2020-03-14 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00516/2020
 ATTAAAGGTTTATACCTTCCC1- C241T C2416T C3037T C14408T A23403G C24096A G25563T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_460415 MT520490
 2020-03-14 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00517/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C8782T C17747T A17858G C18060T T28144C CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_460768
 2020-03-14 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_605/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4586T G12550A C14408T A20268G C20740A A23403G G23868T G29734C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_463971
 2020-03-14 2020-06-11
 Canada hCoV-19/Canada/ON_MU-S13/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C14408T A20268G A23403G G29734C AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_465037
 2020-03-14 2020-06-11
 United Kingdom hCoV-19/England/20119027704/2020
 C241T C3037T G6884R T11638C C14408T A23403G GGG28881AAC C29708T

EPI_ISL_465038
 2020-03-14 2020-06-11
 United Kingdom hCoV-19/England/20119027904/2020
 C241T C3037T C14408T T21895Y A23403G G25429T

EPI_ISL_465043
 2020-03-14 2020-06-11
 United Kingdom hCoV-19/England/20119031304/2020
 C241T C751T C3037T C14408T A23403G

EPI_ISL_465050
 2020-03-14 2020-06-11
 United Kingdom hCoV-19/England/20119034404/2020
 C241T C3037T C3373A C11195T C14408T A23403G GGG28881AAC

EPI_ISL_465070
 2020-03-14 2020-06-11
 United Kingdom hCoV-19/England/20119047904/2020
 A2480G C2558T G11083T C14805T G26144T

EPI_ISL_465073
 2020-03-14 2020-06-11
 United Kingdom hCoV-19/England/20119049904/2020
 C241T C3037T A13907M C14408T A20268R A23403G C28854Y GGG28881RRS

EPI_ISL_465075
 2020-03-14 2020-06-11
 United Kingdom hCoV-19/England/20119054604/2020
 C241T C3037T T7090K C14408T T22791Y A23403G C25831T GGG28881AAC

EPI_ISL_467104
 2020-03-14 2020-06-12
 Spain hCoV-19/Spain/COV001583/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T C29870A

EPI_ISL_467147
 2020-03-14 2020-06-12
 Spain hCoV-19/Spain/COV001576/2020
 C8782T T9477A C14805T C16949Y G17350K G25979T T28144C C28657T C28863T C29870A

EPI_ISL_467180
 2020-03-14 2020-06-12
 Spain hCoV-19/Spain/COV001574/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T C29870A

EPI_ISL_467590
 2020-03-14 2020-06-14
 United States hCoV-19/USA/NM-UNM-00007/2020
 C241T C3037T C14408T T19839C A23403G GGG28881AAC

EPI_ISL_467591
 2020-03-14 2020-06-14
 United States hCoV-19/USA/NM-UNM-00009/2020
 C241T C1059T C3037T G7743T C8733T C14408T G15372T A23403G G25563T

EPI_ISL_467598
 2020-03-14 2020-06-14
 United States hCoV-19/USA/NM-UNM-00016/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_467850 MT614531
 2020-03-14 2020-06-15
 United States SARS-CoV-2/human/USA/MA-QDX-114/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C8782T T11142C C17747T A17858G C18060T T28144C A29413T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467852 MT614533
 2020-03-14 2020-06-15
 United States SARS-CoV-2/human/USA/MA-QDX-135/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C17639T A20268G A23403G C28638T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467853 MT614534
 2020-03-14 2020-06-15
 United States SARS-CoV-2/human/USA/MA-QDX-145/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G12361T C14408T A17399C C18929T A23403G G25563T G26233T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467854 MT614535
 2020-03-14 2020-06-15
 United States SARS-CoV-2/human/USA/MA-QDX-149/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C14408T A23403G G25563T G26233T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467856 MT614477
 2020-03-14 2020-06-15
 United States SARS-CoV-2/human/USA/MA-QDX-31/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C11916T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467857 MT614478
 2020-03-14 2020-06-15
 United States SARS-CoV-2/human/USA/MA-QDX-32/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C14408T G15243T G19962T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467862 MT614483
 2020-03-14 2020-06-15
 United States SARS-CoV-2/human/USA/MA-QDX-61/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C8782T C15960T T18736C G19684T C24034T T26729C C27635T G28077C T28144C C28717T A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467864 MT614485
 2020-03-14 2020-06-15
 United States SARS-CoV-2/human/USA/MA-QDX-68/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1426T C3037T C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467866 MT614487
 2020-03-14 2020-06-15
 United States SARS-CoV-2/human/USA/MA-QDX-80/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467873 MT614493
 2020-03-14 2020-06-15
 United States SARS-CoV-2/human/USA/MI-QDX-71/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467881 MT614496
 2020-03-14 2020-06-15
 United States SARS-CoV-2/human/USA/NJ-QDX-55/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T A2018G C3037T C14408T A23403G C25418T G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467882 MT614497
 2020-03-14 2020-06-15
 United States SARS-CoV-2/human/USA/NJ-QDX-56/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T AAGTCATTT686- C1059T C3037T C14408T A23403G G25563T A26433G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467883 MT614498
 2020-03-14 2020-06-15
 United States SARS-CoV-2/human/USA/NJ-QDX-74/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1426T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467908 MT614509
 2020-03-14 2020-06-15
 United States SARS-CoV-2/human/USA/TX-QDX-60/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_468001
 2020-03-14 2020-06-16
 Australia hCoV-19/Australia/SAP215/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_468508 MT628231
 2020-03-14 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1577/2020
 ATTAAAGGT1- C4776T C8782T C17747T A17858G C18060T C21846Y G28086T T28144C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_468752
 2020-03-14 2020-06-17
 Chile hCoV-19/Chile/Santiago-23741/2020
 C241T C3037T C14408T A23403G T27299C GGG28881AAC T29148C

EPI_ISL_471544
 2020-03-14 2020-06-22
 Czech Republic hCoV-19/Czech Republic/NRL_2312/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471969
 2020-03-14 2020-06-23
 United Kingdom hCoV-19/England/EXET-1373AC/2020
 ATG1605- TAGTTTAAAAAT6511- C17898T

EPI_ISL_474859
 2020-03-14 2020-06-23
 Spain hCoV-19/Spain/Granada-COV002867/2020
 C241T C3037T C14408T A20268G A23403G

EPI_ISL_475928
 2020-03-14 2020-06-25
 Austria hCoV-19/Austria/CeMM0581/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G6352K C14408T A23403G G23675S G25563T GG28882RS CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475954
 2020-03-14 2020-06-25
 Singapore hCoV-19/Singapore/423/2020
 AAAAAAAAAAAA29892-

EPI_ISL_476778
 2020-03-14 2020-06-25
 United States hCoV-19/USA/CA-CZB-1761/2020
 ATTAAAG1- C241T C3037T C14408T T15922Y A23403R AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_476781
 2020-03-14 2020-06-25
 United States hCoV-19/USA/CA-CZB-1764/2020
 ATTAAAGGTTT1- C8782T C17747T A17858G C18060T T28144C G29688T

EPI_ISL_476788
 2020-03-14 2020-06-25
 United States hCoV-19/USA/CA-CZB-1771/2020
 ATTAA1- A12298G G29711T

EPI_ISL_476802
 2020-03-14 2020-06-26
 China hCoV-19/Hong Kong/VM20003442/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C9857T G11083T C14408T A23403G CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_476937 MT827837
 2020-03-14 2020-06-27
 United States SARS-CoV-2/human/USA/WA-UW-862/2020
 ATTAAAGGT1- C241T C1059T C3037T C12809T C14408T A23403G G25563T -29904AAAAAAAAAAAAAAA

EPI_ISL_476939 MT827824
 2020-03-14 2020-06-27
 United States SARS-CoV-2/human/USA/WA-UW-865/2020
 ATTAAA1- C1077A C8782T C14898T C17747T A17858G C18060T T28144C TG29867AA C29870A -29904AAAAAAAAAAAAAAAA

EPI_ISL_479860
 2020-03-14 2020-07-01
 Japan hCoV-19/Japan/PG-0136/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C5672T C8782T C13019T G16381A T17877C C27297T T28144C G28878A G29742A TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_479879
 2020-03-14 2020-07-01
 Japan hCoV-19/Japan/PG-0170/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C11752T C19170A C28819A A29433G TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_479880
 2020-03-14 2020-07-01
 Japan hCoV-19/Japan/PG-0171/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G GGG28881AAC TAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29817-

EPI_ISL_479926
 2020-03-14 2020-07-01
 Japan hCoV-19/Japan/PG-0230/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C8782T G16381A T17877C T28144C G28878A G29742A ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480378 MT772545
 2020-03-14 2020-07-01
 United States SARS-CoV-2/human/USA/WI-UW-396/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C9520T G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481251
 2020-03-14 2020-07-03
 Japan hCoV-19/Japan/NGS-IA-1/2020
 ATTAAA1- C8782T G16381A T17877C T28144C G28878A G29742A

EPI_ISL_482998
 2020-03-14 2020-07-06
 United States hCoV-19/USA/MN-MDH-1277/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T C14408T A20268G A23403G GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_483548
 2020-03-14 2020-07-07
 Bahrain hCoV-19/Bahrein/BAH-07/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C884T G1397A G8653T C10775T G11083T T11974C T28688C G29742T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_484700
 2020-03-14 2020-07-08
 Belgium hCoV-19/Belgium/ULG-10212/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T2537G C3037T C6573T G12191T C14408T T15366C T16479C A23403G G24348C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485837 MT739443 MT913056
 2020-03-14 2020-07-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0536/2020
 ATTAAAGG1- C241T C1059T C3037T C14408T A23403G G25563T C26768T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_485847 MT739453 MT913066
 2020-03-14 2020-07-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0546/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C2416T C3037T C10712T C14408T A15903G A23403G G25563T

EPI_ISL_485851 MT739457 MT913070
 2020-03-14 2020-07-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0550/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- C241T C3037T C14408T C20703T A23403G GGG28881AAC

EPI_ISL_486114
 2020-03-14 2020-07-10
 United States hCoV-19/USA/WA-UW-909/2020
 T2A C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_488608
 2020-03-14 2020-07-14
 United Kingdom hCoV-19/England/NORT-284196/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C10165Y C14408T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488826
 2020-03-14 2020-07-14
 United Kingdom hCoV-19/England/NORT-281418/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G27996T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491439
 2020-03-14 2020-07-17
 Costa Rica hCoV-19/Costa Rica/INC-0027/2020
 ATTAAAGGT1- T11A C241T C1059T C3037T C14184T C14408T A23403G G24959T G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491441
 2020-03-14 2020-07-17
 Costa Rica hCoV-19/Costa Rica/INC-0029/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6696T C10702T C14408T A20268G A23403G C26461T CCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29835-

EPI_ISL_491442
 2020-03-14 2020-07-17
 Costa Rica hCoV-19/Costa Rica/INC-0030/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T G942A C3037T C6696T C14408T A20268G A23403G CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

EPI_ISL_491443
 2020-03-14 2020-07-17
 Costa Rica hCoV-19/Costa Rica/INC-0031/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C241T T1028C C1059T C3037T C14408T A23403G G25563T CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

EPI_ISL_492515
 2020-03-14 2020-07-20
 United Kingdom hCoV-19/England/BRIS-130B23/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A C7011T G11083T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492547
 2020-03-14 2020-07-20
 United Kingdom hCoV-19/England/BRIS-130B14/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A C7011T G11083T G29543K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492592
 2020-03-14 2020-07-20
 United Kingdom hCoV-19/England/BRIS-130BAB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C14408T C14786T G20578T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492620
 2020-03-14 2020-07-20
 United Kingdom hCoV-19/England/BRIS-130B05/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A C7011T G11083T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_494624
 2020-03-14 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1499/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- A3046G C8782T A16467G G16975T C17747T A17858G C18060T C23185T T28144C

EPI_ISL_498017
 2020-03-14 2020-07-26
 South Korea hCoV-19/Korea/KCDC2116/2020
 ATTAAAG1- G5572T G11083T G13564T C14805T G15708T G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_498728 MT806789
 2020-03-14 2020-07-27
 United States SARS-CoV-2/human/USA/MI-QDX-216/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A5011C C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_500087
 2020-03-14 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A4D8F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T1623C C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_500092
 2020-03-14 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A4E13/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G

EPI_ISL_500102
 2020-03-14 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A5067/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A1515G C9223T G11083T C14805T T17247C A17799G G26144T A28692W TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_500103
 2020-03-14 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A5076/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A2480G C2558T G11083T A13623T C14805T C25568T G26144T C29870A

EPI_ISL_500107
 2020-03-14 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A50FE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_500108
 2020-03-14 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A510A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_500597
 2020-03-14 2020-07-29
 Australia hCoV-19/Australia/NSW2005/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G845T C3037T C14408T A23403G A26530G CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_501564
 2020-03-14 2020-07-31
 United Kingdom hCoV-19/England/BRIS-1310BA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T931C ATG1605- T12418C G20024A G26416C G29425A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501593
 2020-03-14 2020-07-31
 United Kingdom hCoV-19/England/BRIS-1310D8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G C9223T G11083T C14805T T17247C A21625G G26144T G29427K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507002
 2020-03-14 2020-08-03
 Singapore hCoV-19/Singapore/31nan/2020
 CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_507003
 2020-03-14 2020-08-03
 Singapore hCoV-19/Singapore/758/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6312A G11083T C13730T C23929T C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507004
 2020-03-14 2020-08-03
 Singapore hCoV-19/Singapore/759/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507011 MT820462
 2020-03-14 2020-07-30
 Saudi Arabia SARS-CoV-2/human/SAU/KAIMRC02/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATT1- C241T C1059T C3037T C14408T A23403G G24368T G25563T GGG28881AAC AGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29827-

EPI_ISL_507720
 2020-03-14 2020-08-03
 United States hCoV-19/USA/MI-MDHHS-SC21466/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C14408T A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_508774 MT834616
 2020-03-14 2020-08-04
 United States SARS-CoV-2/human/USA/FL-BPHL-0570/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C14408T C19063T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_508775 MT834617
 2020-03-14 2020-08-04
 United States SARS-CoV-2/human/USA/FL-BPHL-0571/2020
 AT1- C8782T C17747T A17858G C18060T C24240T A24694T T28144C CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_508866
 2020-03-14 2020-08-04
 Switzerland hCoV-19/Switzerland/1000482984/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T C15324T A23403G AGGAGAATG29860- AAAAA29899-

EPI_ISL_508875
 2020-03-14 2020-08-04
 France hCoV-19/France/ARA0873/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T C14408T A23403G G25534A G25563T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_508876
 2020-03-14 2020-08-04
 France hCoV-19/France/ARA08938/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_509222
 2020-03-14 2020-08-05
 Switzerland hCoV-19/Switzerland/1000503309/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T C15324T A23403G GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_509503
 2020-03-14 2020-08-05
 Australia hCoV-19/Australia/NSW2146/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C2558T G11083T C14805T G26144T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_509717 MT846421
 2020-03-14 2020-08-05
 United States SARS-CoV-2/human/USA/FL-BPHL-0659/2020
 ATTA1- C241T C1059T C3037T C14408T A23403G G25563T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_509719 MT846423
 2020-03-14 2020-08-05
 United States SARS-CoV-2/human/USA/FL-BPHL-0661/2020
 ATTA1- C241T C1059T C3037T C14408T A23403G G25563T C27964T C28099T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_509721 MT846425
 2020-03-14 2020-08-05
 United States SARS-CoV-2/human/USA/FL-BPHL-0663/2020
 ATTAAA1- C241T C1059T C3037T C14408T A23403G G25563T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_509722 MT846426
 2020-03-14 2020-08-05
 United States SARS-CoV-2/human/USA/FL-BPHL-0664/2020
 ATTA1- C241T C1059T C3037T C14408T A23403G G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_510271
 2020-03-14 2020-08-06
 Spain hCoV-19/Spain/COV004029/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C3037T C14408T A20268G A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_510273
 2020-03-14 2020-08-06
 Spain hCoV-19/Spain/COV004032/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C14408T A20268G C21364T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_510275
 2020-03-14 2020-08-06
 Spain hCoV-19/Spain/COV004036/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C14408T A20268G A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_510956
 2020-03-14 2020-08-07
 Portugal hCoV-19/Portugal/PT0697/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_510958
 2020-03-14 2020-08-07
 Portugal hCoV-19/Portugal/PT0699/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3373A C13297T C14408T C20016T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511035
 2020-03-14 2020-08-07
 Portugal hCoV-19/Portugal/PT0776/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T T721C C3037T C14408T A23403G C25549T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511039
 2020-03-14 2020-08-07
 Portugal hCoV-19/Portugal/PT0780/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511437
 2020-03-14 2020-08-07
 Portugal hCoV-19/Portugal/PT1478a/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C2416T C3037T C14408T C21575T A23403G G25563T C28807T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_513419 MT886293
 2020-03-14 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0006/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATC1- C241T C1059T C3037T C14408T A23403G G25563T AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513422 MT886296
 2020-03-14 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0009/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGT1- C241T C3037T C14408T C22450T A23403G AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513424 MT886298
 2020-03-14 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0011/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAA1- C241T C3037T C14408T C22450T A23403G AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513425 MT886299
 2020-03-14 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0012/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAA1- C241T C3037T C14408T G22241T C22450T A23403G AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513426 MT886300
 2020-03-14 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0013/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATT1- C241T C1059T C3037T C12809T C14408T A23403G G25563T C26625T AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513429 MT886303
 2020-03-14 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0016/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAA1- A5317G C8782T C17747T T17826C A17858G C18060T A19476G T28144C AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513430 MT886304
 2020-03-14 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0017/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAA1- C241T C1059T A2439G C3037T T3160C A13901G C14408T A23403G G25563T C26625T AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513465 MT886339
 2020-03-14 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0054/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAA1- C241T C3037T C14408T C22450T A23403G A25864G AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_515297
 2020-03-14 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0008/2020
 ATT1- A4803C G11083T C14805T T17247C G20580T G26144T

EPI_ISL_515299
 2020-03-14 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0010/2020
 ATTAAA1- C4999T C5170T C8782T T17673C C17747T A17858G C18060T C26735T T28144C AAA29901-

EPI_ISL_516268
 2020-03-14 2020-08-20
 United States hCoV-19/USA/MI-MDHHS-SC21541/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_523962
 2020-03-14 2020-08-27
 Moldova hCoV-19/Moldova/ChVir7770/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- T11012C G11083T G13627T C14805T C15540T G26144T A28338G CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_523964
 2020-03-14 2020-08-27
 Moldova hCoV-19/Moldova/ChVir7771/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T T8749C C14408T C15324T A23403G CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_524656
 2020-03-14 2020-08-28
 United Kingdom hCoV-19/England/LOND-12602B8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A C4668T G11083T T18669C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524798
 2020-03-14 2020-08-28
 Brazil hCoV-19/Brazil/RN-IEC-162277/2020
 C241T C3037T C14408T A23403G T27299C GGG28881AAC T29148C

EPI_ISL_525206
 2020-03-14 2020-08-28
 Peru hCoV-19/Peru/LAL-INS-064/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAA1- C8782T C26088T T28144C ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_526941
 2020-03-14 2020-09-02
 Denmark hCoV-19/Faroe Islands/HFS-11/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1302T C3037T C14408T A23403G G25563T AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_528072
 2020-03-14 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42190565/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T C18508T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528074
 2020-03-14 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42190622/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C643T C3037T C3787T C14408T C15324T A23403G T27206C ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_528080
 2020-03-14 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42190958/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A642G C763A C3037T C7735T C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528081
 2020-03-14 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42190971/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A20268G A23403G C25658T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528082
 2020-03-14 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42190980/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528083
 2020-03-14 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42190994/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G5572T C8208T C14408T C15324T G20940T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528084
 2020-03-14 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42190998/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G1820A A2480G C2558T T8599C G11083T C14805T G26144T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528085
 2020-03-14 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42190999/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G ATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29850-

EPI_ISL_528086
 2020-03-14 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42191004/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G G28690T TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_528087
 2020-03-14 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42191012/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T T658C C3037T C14408T A23403G A24862G C28629T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528088
 2020-03-14 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42191063/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C313T C3037T C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528089
 2020-03-14 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42191134/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528090
 2020-03-14 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42191153/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528092
 2020-03-14 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42191222/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G11083T G12278T C14805T T17247C G26144T G26730T G29414T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528093
 2020-03-14 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42191225/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G11083T G12278T C14805T T17247C G26144T G26730T G29414T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_530035
 2020-03-14 2020-09-10
 Spain hCoV-19/Spain/MD-LP106-2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12970T C14408T A20268G A23403G C28333T ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_534797
 2020-03-14 2020-09-14
 United Kingdom hCoV-19/England/OXON-B2B57/2020
 ATTAAAGGTTTATACCTTCC1- C241T C3037T T8672C C14408T A23403G G25429T C26461T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_535770
 2020-03-14 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00218056/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- T28417C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535771
 2020-03-14 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00218090/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- T28417C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535772
 2020-03-14 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00218268/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A C14408T A23403G GGG28881AAC A29307C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535773
 2020-03-14 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00218269/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A408G C3037T G10265A C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535774
 2020-03-14 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00218308/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3580G C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535775
 2020-03-14 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00218310/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T G10265A C14408T A19830G A23403G C25587T GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_535776
 2020-03-14 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00218334/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G9974A C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535777
 2020-03-14 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00218337/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535778
 2020-03-14 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00218350/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535779
 2020-03-14 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00218353/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535780
 2020-03-14 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00218371/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T G2659T C3037T C14408T T22078C A23403G G25563T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_535781
 2020-03-14 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00218472/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535783
 2020-03-14 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00218477/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8208T G9267A T9667C C14408T A23403G G25947T G28361A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535785
 2020-03-14 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00218559/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C11916T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535786
 2020-03-14 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00219020/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C8782T T13180C C16084T T18736C C24034T T26729C C26882T G28077C T28144C A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535787
 2020-03-14 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00219039/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8208T G9267A T9667C C14408T A23403G G25947T G28361A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535788
 2020-03-14 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00219049/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535790
 2020-03-14 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00219089/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535792
 2020-03-14 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00219340/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C12885T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535794
 2020-03-14 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00219618/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A G10201T C14408T A23403G GGG28881AAC C29585T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535803
 2020-03-14 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00220827/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535804
 2020-03-14 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00220832/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A C6638T C7011T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535805
 2020-03-14 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00220897/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T ATT1080- C3037T C14408T C15324T A23403G G28690T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535816
 2020-03-14 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00222448/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G2659T C3037T C14408T T22078C A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536542
 2020-03-14 2020-09-16
 Peru hCoV-19/Peru/LIM-INS-147/2020
 ATTAAAG1- C241T C3037T C14408T T19839C A23403G C27416T GGG28881AAC

EPI_ISL_536552
 2020-03-14 2020-09-16
 Peru hCoV-19/Peru/LIM-INS-159/2020
 ATTA1- C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_538012
 2020-03-14 2020-09-16
 Spain hCoV-19/Spain/VC-CSIC-98003074/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C5467T C14408T G17140T G17972T A20268G A23403G C24319Y AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_538015
 2020-03-14 2020-09-16
 Spain hCoV-19/Spain/VC-CSIC-98003078/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C8782T C26088T T28144C AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_538017
 2020-03-14 2020-09-16
 Spain hCoV-19/Spain/VC-CSIC-98003081/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C313T C3037T C14408T A23403G GGG28881AAC C29585T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_538019
 2020-03-14 2020-09-16
 Spain hCoV-19/Spain/VC-CSIC-98003083/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C398T C8782T C26088T T28144C AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_538023
 2020-03-14 2020-09-16
 Spain hCoV-19/Spain/VC-CSIC-98003087/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A20268G A23403G C28471T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_538024
 2020-03-14 2020-09-16
 Spain hCoV-19/Spain/VC-CSIC-98003088/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- T1476G C8782T T9477A C14805T G25979T T28144C C28657T C28863T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_538025
 2020-03-14 2020-09-16
 Spain hCoV-19/Spain/VC-CSIC-98003089/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T G6352T C14408T A20268G A23403G G29734C AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_538030
 2020-03-14 2020-09-16
 Spain hCoV-19/Spain/VC-CSIC-98003094/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C14408T C17639T A20268G A23403G C28638T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_538913
 2020-03-14 2020-09-17
 United Kingdom hCoV-19/England/LEED-2AA112/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16393Y G22583A A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539015
 2020-03-14 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8615/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C18486T G22203T G29032A G29616T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541000
 2020-03-14 2020-09-22
 South korea hCoV-19/South Korea/IHC2681/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T C14408T C14786T A23403G G25563T G28857A AAAAAAAAAAAAAAAA29888-

EPI_ISL_548978
 2020-03-14 2020-09-28
 Singapore hCoV-19/Singapore/970/2020
 ATT1- AAAAAAAAAAAA29892-

EPI_ISL_548981
 2020-03-14 2020-09-28
 Singapore hCoV-19/Singapore/973/2020
 A1- A7479G G11083T C14805T T17247C C25572T G26144T C28887T AAAAAAAAAAAA29892-

EPI_ISL_548986
 2020-03-14 2020-09-28
 Singapore hCoV-19/Singapore/978/2020
 ATTAAAGGTTTATA1- A29622G AAAAAAAAAAAA29892-

EPI_ISL_549001
 2020-03-14 2020-09-28
 Singapore hCoV-19/Singapore/993/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T A13947T C14408T A23403G GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_566021
 2020-03-14 2020-09-30
 United States hCoV-19/USA/MI-MDHHS-SC21970/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C1380T C3037T C14408T A23403G G25563T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

MT459858
 2020-03-14 2020-05-11
 Greece SARS-CoV-2/human/GRC/142_33859/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

MT509453
 2020-03-14 2020-05-22
 United States SARS-CoV-2/human/USA/MD-HP00020/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T9172C A10948G C14408T C16658T A23403G G26730T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT509459
 2020-03-14 2020-05-22
 United States SARS-CoV-2/human/USA/MD-HP00038/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C337T C379A C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT509464
 2020-03-14 2020-05-22
 United States SARS-CoV-2/human/USA/DC-HP00007/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T C1059T C3037T G8676T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT509490
 2020-03-14 2020-05-22
 United States SARS-CoV-2/human/USA/DC-HP00026/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C14408T A23403G G25563T G26233T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT510719
 2020-03-14 2020-05-25
 United States SARS-CoV-2/human/USA/hCoV-19-USA-CA-UCSF-UC41/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTC1- C8090T G11083T C14805T T17247C G26144T ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

MT577015
 2020-03-14 2020-03-14
 India SARS-CoV-2/human/IND/32/2020
 C241T C313T C3037T C14408T A23403G GGG28881AAC AAAAAA29898-

MT670013
 2020-03-14 2020-06-25
 Chile SARS-CoV-2/human/CHL/2020-23741/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G T27299C GGG28881AAC T29148C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT671815
 2020-03-14 2020-06-26
 United States SARS-CoV-2/human/USA/CA-CZB-1761/2020
 ATTAAAG1- C241T C3037T C14408T T15922Y A23403R AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT671818
 2020-03-14 2020-06-26
 United States SARS-CoV-2/human/USA/CA-CZB-1764/2020
 ATTAAAGGTTT1- C8782T C17747T A17858G C18060T T28144C G29688T

MT671825
 2020-03-14 2020-06-26
 United States SARS-CoV-2/human/USA/CA-CZB-1771/2020
 ATTAA1- A12298G G29711T

MT706138
 2020-03-14 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-16/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C14786T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706244
 2020-03-14 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-251/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13517T C14408T A23403G C25350T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT772086
 2020-03-14 2020-07-16
 United States SARS-CoV-2/human/USA/WI-UW-03/2020
 A1- C241T C1059T C3037T T6814C G11083T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

MT797765
 2020-03-14 2020-07-24
 United States SARS-CoV-2/human/USA/COVID20-0014/2020
 ATTAAAGGT1- T490A C3177T C6525T C8782T C8956T T18736C C24034T T26729C G28077C T28144C A29700G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

MT810508
 2020-03-14 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1499-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- A3046G C8782T A16467G G16975T C17747T A17858G C18060T C23185T T28144C CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811165
 2020-03-14 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0098-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T A2018G C3037T C14214T C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811166
 2020-03-14 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0099-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MW008568
 2020-03-14 2020-09-15
 United States SARS-CoV-2/human/USA/GA-EHC-038L/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- T490A C3177T C8772T C8782T T18736C C24034T T26729C G28077C T28144C A29700G TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

MW030211
 2020-03-14 2020-09-22
 Peru SARS-CoV-2/human/PER/covper071/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTC1- C241T C3037T C14408T T19839C A23403G C27416T GGG28881AAC C29675- ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

MW030219
 2020-03-14 2020-09-22
 Peru SARS-CoV-2/human/PER/covper083/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGT1- C241T C3037T C14408T A23403G GGG28881AAC C29675- ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_415710
 2020-03-15 2020-03-19
 Russia hCoV-19/Russia/StPetersburg-3524/2020
 C241T C3037T A4992C G12995C C14408T A23403G G25563T

EPI_ISL_416489
 2020-03-15 2020-03-22
 United States hCoV-19/USA/WI-UW-02/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C17639T A20268G A23403G C28638T C29640T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_416491
 2020-03-15 2020-03-22
 United States hCoV-19/USA/WI-UW-04/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C1059T C3037T C14408T G15760A A23403G G25563T GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_416492
 2020-03-15 2020-03-22
 United States hCoV-19/USA/WI-UW-05/2020
 ATTAAAGGTTTATACCTTCC1- C241T C1059T C3037T C14408T G15760A A23403G G25563T G29868T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_416514 MT450925
 2020-03-15 2020-03-22
 Australia SARS-CoV-2/human/AUS/VIC08/2020
 ATTA1- C8782T C17747T A17858G C18060T G25049K T28144C A29869R

EPI_ISL_416538
 2020-03-15 2020-03-23
 New Zealand hCoV-19/New Zealand/20VR0275/2020
 T490A C3177T C8782T T18736C G19684T C24034T T26729C C27635T G28077C T28144C A29700G

EPI_ISL_416539
 2020-03-15 2020-03-23
 New Zealand hCoV-19/NewZealand/20VR0276/2020
 C8782T G19684T C24034T C27635T T28144C A29700G

EPI_ISL_416683 MT252738
 2020-03-15 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW145/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- AA34HT C37H G4148T C8782T C17747T A17858G C18060T T28144C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_416685 MT252739
 2020-03-15 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW147/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_416711 MT252719
 2020-03-15 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW173/2020
 ATTAAAG1- T7582C C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_416713 MT252720
 2020-03-15 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW175/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAA1- G373A C8782T C17747T A17858G C18060T G26143T T27384C T28144C G29862R AAAAAAAAAAAA29892-

EPI_ISL_416715 MT252714
 2020-03-15 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW177/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C8782T C17747T A17858G C18060T T28144C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_416717 MT252713
 2020-03-15 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW179/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCT1- C8782T C17747T A17858G C18060T T28144C AAAA29900-

EPI_ISL_417020
 2020-03-15 2020-03-23
 Belgium hCoV-19/Belgium/ULG-6939/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G C23679T G25563T G28857A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417021
 2020-03-15 2020-03-23
 Belgium hCoV-19/Belgium/ULG-6942/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C14408T G19518T A23403G G28845T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417022
 2020-03-15 2020-03-23
 Belgium hCoV-19/Belgium/ULG-6948/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C14408T G19518T A23403G G28845T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417023
 2020-03-15 2020-03-23
 Belgium hCoV-19/Belgium/ULG-6950/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C14408T G19518T A23403G G28845T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417025
 2020-03-15 2020-03-23
 Belgium hCoV-19/Belgium/ULG-7019/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G C9223T C9438T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417374 MT246482
 2020-03-15 2020-03-25
 United States SARS-CoV-2/human/USA/WA-UW225/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGA1- C8782T T15927G C17747T A17858G C18060T C19269T C26936T T27722C T28144C AA29902-

EPI_ISL_417376 MT246484
 2020-03-15 2020-03-25
 United States SARS-CoV-2/human/USA/WA-UW227/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAAC19- C37T C241T C1059T C3037T C10319T C14408T A23403G G25563T C27964T C29870M A29903-

EPI_ISL_417377 MT246485
 2020-03-15 2020-03-25
 United States SARS-CoV-2/human/USA/WA-UW228/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGT1- C8782T C11674T C17747T A17858G C18060T T28144C C28826T TG29867AA C29870A

EPI_ISL_417379 MT246487
 2020-03-15 2020-03-25
 United States SARS-CoV-2/human/USA/WA-UW230/2020
 ATTAAAGGTTTATACC1- AACC34HTTH CG197TT TTT200CAG GTC204CGG G208T G210A C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAA29900-

EPI_ISL_417382 MT246490
 2020-03-15 2020-03-25
 United States SARS-CoV-2/human/USA/WA-UW233/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAG1- C241T C1059T C3037T C14408T A23403G G25563T G29553A -29904AA

EPI_ISL_417467 MT582478
 2020-03-15 2020-03-26
 Germany SARS-CoV-2/human/DEU/NRW-22/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_417505
 2020-03-15 2020-03-26
 United States hCoV-19/USA/WI-UW-11/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417512
 2020-03-15 2020-03-27
 United States hCoV-19/USA/WI-UW-24/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417516
 2020-03-15 2020-03-27
 United States hCoV-19/USA/WI-UW-13/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C12809T C14408T A22524T A23403G T25476C G25563T C26625T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417666
 2020-03-15 2020-03-27
 Iceland hCoV-19/Iceland/337/2020
 TAA1603- G2782T C20270T

EPI_ISL_417667
 2020-03-15 2020-03-27
 Iceland hCoV-19/Iceland/338/2020
 C20270T

EPI_ISL_417680
 2020-03-15 2020-03-27
 Iceland hCoV-19/Iceland/177/2020
 C241T C3037T A8203G A10323G C14408T A20268G A23403G G24193T

EPI_ISL_417700
 2020-03-15 2020-03-27
 Iceland hCoV-19/Iceland/173/2020
 C241T C1059T C3037T C13458T C14408T A23403G G25563T

EPI_ISL_417712
 2020-03-15 2020-03-27
 Iceland hCoV-19/Iceland/172/2020
 C241T A1331G C3037T A10323G C14408T A20268G A23403G

EPI_ISL_417737
 2020-03-15 2020-03-27
 Iceland hCoV-19/Iceland/155/2020
 C241T C3037T C14408T C15324T C21575T A23403G

EPI_ISL_417740
 2020-03-15 2020-03-27
 Iceland hCoV-19/Iceland/7/2020
 C241T C3037T C14408T A23403G A26530G G29706T

EPI_ISL_417808
 2020-03-15 2020-03-27
 Iceland hCoV-19/Iceland/165/2020
 C241T C3037T A10323G C14408T A20268G A23403G

EPI_ISL_417809
 2020-03-15 2020-03-27
 Iceland hCoV-19/Iceland/167/2020
 C241T C3037T A10323G C14408T A20268G A23403G

EPI_ISL_417813
 2020-03-15 2020-03-27
 Iceland hCoV-19/Iceland/178/2020
 C241T C3037T C14408T G16864A A23403G GGG28881AAC

EPI_ISL_417819
 2020-03-15 2020-03-27
 Iceland hCoV-19/Iceland/192/2020
 C241T C3037T C14408T C15324T C21575T A23403G

EPI_ISL_417864
 2020-03-15 2020-03-27
 Iceland hCoV-19/Iceland/8/2020
 C5142T G11083T C14805T T17247C G26144T

EPI_ISL_418009
 2020-03-15 2020-03-28
 Portugal hCoV-19/Portugal/PT0024/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T C17639T A20268G A23403G G27506T C28638T A29700G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_418019
 2020-03-15 2020-03-28
 Portugal hCoV-19/Portugal/PT0034/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G G25273T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_418022
 2020-03-15 2020-03-28
 Portugal hCoV-19/Portugal/PT0037/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C1059T C3037T A13712G C14408T A20676G A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_418038 MT259245
 2020-03-15 2020-03-28
 United States SARS-CoV-2/human/USA/WA-UW253/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAAT1- C8782T C17747T A17858G C18060T T28144C -29904ANAVA

EPI_ISL_418064 MT259271
 2020-03-15 2020-03-28
 United States SARS-CoV-2/human/USA/WA-UW279/2020
 ATTAAAGGTTTA1- AACC34CTTT C8782T T15888C C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_418067 MT259273
 2020-03-15 2020-03-28
 United States SARS-CoV-2/human/USA/WA-UW282/2020
 ATTAAAGGTTTATACCT1- AACC34TTTA C241T C1059T C3037T C14408T A23403G G25563T G29553A -29904ANADA

EPI_ISL_418072 MT259277
 2020-03-15 2020-03-28
 United States SARS-CoV-2/human/USA/WA-UW287/2020
 ATTAAAGGTTTATACCTTC1- AACC34HTTH C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T AAA29901-

EPI_ISL_418073 MT259278
 2020-03-15 2020-03-28
 United States SARS-CoV-2/human/USA/WA-UW288/2020
 ATTAAA1- A35W C37H C241T C1059T C3037T C14408T A23403G G25563T G29553A

EPI_ISL_418075 MT259280
 2020-03-15 2020-03-28
 United States SARS-CoV-2/human/USA/WA-UW290/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCA1- C8782T C10818T C14937T C17747T A17858G C18060T T28144C AAAA29900-

EPI_ISL_418076 MT259281
 2020-03-15 2020-03-28
 United States SARS-CoV-2/human/USA/WA-UW291/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- A34W C241T C1059T C3037T C14408T A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_418077 MT259282
 2020-03-15 2020-03-28
 United States SARS-CoV-2/human/USA/WA-UW292/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C8782T C17747T A17858G C18060T G22988A T28144C AAAAAAAAA29895-

EPI_ISL_418080 MT259285
 2020-03-15 2020-03-28
 United States SARS-CoV-2/human/USA/WA-UW295/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCT1- A4236G G11083T C14805T A19137T T25655C G26144T AAAAAAA29897-

EPI_ISL_418081 MT259286
 2020-03-15 2020-03-28
 United States SARS-CoV-2/human/USA/WA-UW296/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C1059T C3037T G12111A C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAA29884-

EPI_ISL_418082 MT259287
 2020-03-15 2020-03-28
 United States SARS-CoV-2/human/USA/WA-UW297/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCG1- C8782T C10572T T11538C C17326T C17747T A17858G A17884G C18060T G19645T G23242T T28144C AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_418136
 2020-03-15 2020-03-28
 United Kingdom hCoV-19/Wales/PHWC-23FFB/2020
 ATTAAAGG1- G1440A G2891A C25669T G28851T G29737S AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_418197
 2020-03-15 2020-03-28
 United States hCoV-19/USA/NY-NYUMC12/2020
 C241T C1059T C3037T C14408T A20755C A23403G G25563T

EPI_ISL_418231
 2020-03-15 2020-03-29
 France hCoV-19/France/HF2496/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C3037T C14408T C15324T A23403G C24096T TGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29809-

EPI_ISL_418232
 2020-03-15 2020-03-29
 France hCoV-19/France/IDF2532/2020
 ATTAAAGGTTTATACCTTCCC1- C241T C2416T C3037T G8371T C14408T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_418233
 2020-03-15 2020-03-29
 France hCoV-19/France/IDF2533/2020
 ATTAAAGGTTTATACCTTC1- C241T C2416T C3037T G8371T C14408T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_418354
 2020-03-15 2020-03-15
 Canada hCoV-19/Canada/ON_PHL4088/2020
 A1- C241T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418412
 2020-03-15 2020-03-15
 France hCoV-19/France/ARA094100/2020
 C241T T1270C C3037T C14408T C15324T C16762T A23403G C28818T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_418413
 2020-03-15 2020-03-15
 France hCoV-19/France/ARA09428/2020
 C241T C3037T C14408T A23403G G25563T C26013T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_418414
 2020-03-15 2020-03-15
 France hCoV-19/France/ARA09434/2020
 C241T C3037T C14408T C15324T C16762T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_418672
 2020-03-15 2020-03-30
 United Kingdom hCoV-19/England/20120002102/2020
 A2480G C2558T C9724T G11083T C14805T C20790T G26144T

EPI_ISL_418677
 2020-03-15 2020-03-30
 United Kingdom hCoV-19/England/20122087702/2020
 A2480G C2558T C7011T C10615Y G11083T G11405A C14805T A19476R C19961Y G26144T C28869T

EPI_ISL_418860 MT359865
 2020-03-15 2020-03-31
 Spain SARS-CoV-2/human/ESP/VH000001133/2020
 ATTAAAGGTTTAT1- C241T C3037T C14408T A20268G A23403G

EPI_ISL_418884 MT263398
 2020-03-15 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW317/2020
 ATTAAAGGTTTATACCTT1- C6310T C8782T C17747T A17858G C18060T G27327T T28144C G28378T GA29868CT A29903-

EPI_ISL_418886 MT263399
 2020-03-15 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW319/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA G1401A C8782T C17747T A17858G C18060T T28144C -29904AAAAAAAAAAAAAA

EPI_ISL_418928 MT263441
 2020-03-15 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW361/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCT1- C2094T C8782T C17747T A17858G C18060T T19203C G22984A T27384C T28144C AAAAAA29898-

EPI_ISL_418944 MT263457
 2020-03-15 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW390/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAA1- C7518T C8782T C17747T A17858G C18060T T23119A A27525G T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_418945 MT263458
 2020-03-15 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW378/2020
 ATTAAAGGTTTAT1- AACC34TTTH A6693G C8782T C14877T C17747T A17858G C18060T T28144C A29188T AAAAAAAAA29895-

EPI_ISL_418955 MT263469
 2020-03-15 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW389/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTG1- C8782T C17747T A17858G C18060T G22984A T27384C T28144C TG29867AA C29870A -29904AAAAAAAAAAAAAAA

EPI_ISL_419542 MT582475
 2020-03-15 2020-04-02
 Germany SARS-CoV-2/human/DEU/NRW-25/2020
 C241T C1059T C3037T G5861A C10969Y C14408T G15380T A23403G G25563T

EPI_ISL_419543 MT582474
 2020-03-15 2020-04-02
 Germany SARS-CoV-2/human/DEU/NRW-26/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_419544 MT582473
 2020-03-15 2020-04-02
 Germany SARS-CoV-2/human/DEU/NRW-27/2020
 C241T C1059T C3037T C14408T A23403G G25563T GGG28881RRS G29422K

EPI_ISL_419545 MT582472
 2020-03-15 2020-04-02
 Germany SARS-CoV-2/human/DEU/NRW-28/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_419546 MT582471
 2020-03-15 2020-04-02
 Germany SARS-CoV-2/human/DEU/NRW-29/2020
 C241T C1059T C3037T C14408T A23403G G25563T T27299Y

EPI_ISL_419548 MT582469
 2020-03-15 2020-04-02
 Germany SARS-CoV-2/human/DEU/NRW-31/2020
 G210K A2480R C2558Y C3037Y G11083K A12715R C14408Y C14805Y A23403R G26144K GGG28881RRS

EPI_ISL_419549 MT582468
 2020-03-15 2020-04-02
 Germany SARS-CoV-2/human/DEU/NRW-32/2020
 C241T C1059T C3037T C14408T A23403G G25563T G29422T

EPI_ISL_419564
 2020-03-15 2020-04-02
 Luxembourg hCoV-19/Luxembourg/LNS0366116/2020
 A187G C241T C3037T C14408T G17014T A23403G C26013T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_419583
 2020-03-15 2020-04-02
 Luxembourg hCoV-19/Luxembourg/LNS3588186/2020
 C241T CTTAAT2822YWKRMW A2831M C3037T G4255T G5470K C14408T G20995T A23403G A26530G CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_419589
 2020-03-15 2020-04-02
 Luxembourg hCoV-19/Luxembourg/LNS4845603/2020
 C241T C1609Y C3037T C13862T C14408T A23403G C28836T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_419597
 2020-03-15 2020-04-02
 Luxembourg hCoV-19/Luxembourg/LNS7928872/2020
 C241T C1059T C3037T C4320T C14408T A23403G G25563T C25688T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_419601
 2020-03-15 2020-04-02
 Luxembourg hCoV-19/Luxembourg/LNS9086704/2020
 C241T C1059T C3037T C4320T C14408T A23403G G25563T C25688T AAAAAAAAAAAAAAAAAAAA29884-

EPI_ISL_419795 MT450995
 2020-03-15 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC85/2020
 ATTAAAGGTTTATACCTTCCCA1- T490A C3177T C8782T T18736C G19684T C24034T T26729C C27635T G28077C T28144C A29700G

EPI_ISL_419796 MT450996
 2020-03-15 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC86/2020
 AT1- T490A C3177T C8782T T18736C G19684T C24034T T26729C C27635T G28077C T28144C A29700G

EPI_ISL_419797 MT450997
 2020-03-15 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC87/2020
 ATT1- A2480G C2558T G11083T C14805T C19763T G26144T

EPI_ISL_419798 MT450998
 2020-03-15 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC88/2020
 ATTA1- A2480G C2558T G11083T C14805T C19763T G26144T

EPI_ISL_419800 MT450999
 2020-03-15 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC89/2020
 ATTAAAGG1- C241T C3037T C14408T C17104T A20268G A23403G G29734C

EPI_ISL_419801 MT451000
 2020-03-15 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC90/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A17993G A23403G GGG28881AAC

EPI_ISL_419804 MT451001
 2020-03-15 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC91/2020
 AT1- C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_419809 MT451002
 2020-03-15 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC92/2020
 ATTA1- C241T C3037T C14408T A23403G

EPI_ISL_419836 MT451043
 2020-03-15 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC139/2020
 ATTAAAGGTTTATACC1- C8782T C17747T A17858G C18060T A24694T T28144C

EPI_ISL_420177
 2020-03-15 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C0840/2020
 A2480G C2558T C3619T G11083T C14805T G26144T C26735T C26885T

EPI_ISL_420303
 2020-03-15 2020-04-06
 United States hCoV-19/USA/AK-PHL002/2020
 ATTAAAGGTTTATACC1- C241T C3037T C6504T C14408T A23403G GAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29864-

EPI_ISL_420304
 2020-03-15 2020-04-06
 United States hCoV-19/USA/AK-PHL003/2020
 ATTAAAGGTTTAT1- C241T C3037T C6504T C14408T A23403G GAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29864-

EPI_ISL_420536
 2020-03-15 2020-04-06
 Australia hCoV-19/Australia/WA04/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C8782Y C17747T A17858G C18060T A27525G T28144C GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_421221
 2020-03-15 2020-04-07
 China hCoV-19/Hangzhou/HZCDC6789/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G9190T G11083T T14034C C14805T C16468T T17247C T19646C C24133T G26144T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_421366 MT370874
 2020-03-15 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08149/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A AAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29812-

EPI_ISL_421505
 2020-03-15 2020-04-08
 France hCoV-19/France/IDF2548/2020
 C241T C1059T C3037T G5017T C10582T C14408T A23403G G25563T C27059T C29451T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421543
 2020-03-15 2020-04-08
 United States hCoV-19/USA/WY-WYPHL006/2020
 C241T C1059T C3037T G10870T C14408T A23403G G25563T

EPI_ISL_421544
 2020-03-15 2020-04-08
 United States hCoV-19/USA/WY-WYPHL007/2020
 C241T C1059T C3037T G10870T C14408T A23403G G25563T

EPI_ISL_421545
 2020-03-15 2020-04-08
 United States hCoV-19/USA/WY-WYPHL008/2020
 C241T C1059T C3037T G10870T C14408T A23403G G25563T

EPI_ISL_421683
 2020-03-15 2020-04-09
 United States hCoV-19/USA/MN124-MDH124/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T T29699Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_422659 LR878200
 2020-03-15 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_111/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422815 LR878141
 2020-03-15 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_54/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A11438G C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422816 LR878137
 2020-03-15 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_55/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T T17247C G26144T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422817 LR878144
 2020-03-15 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_56/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A11438G C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_424626
 2020-03-15 2020-04-13
 Mexico hCoV-19/Mexico/CDMX-INER_04/2020
 C241T C2940T C3037T T6842A C14408T A23403G T26232C TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_424703
 2020-03-15 2020-04-13
 Sweden hCoV-19/Sweden/RV-FOI-1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCT1- ATG1605- C25047T G27706T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425501
 2020-03-15 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10E12C/2020
 C2558T G11083T C14805T C15960T G20275T G26144T

EPI_ISL_425657
 2020-03-15 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR112/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425658
 2020-03-15 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR113/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C8782T T18736C T19420C G19684T C24034T T26729C C27635T G28077C T28144C A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425669
 2020-03-15 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR126/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C988T G11083T C14805T T17247C G26144T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_425850
 2020-03-15 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB046/2020
 C9996T C14805T T17247C C19484T

EPI_ISL_426306
 2020-03-15 2020-04-15
 United States hCoV-19/USA/NY-Wadsworth-16004-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426316
 2020-03-15 2020-04-15
 United States hCoV-19/USA/NY-Wadsworth-16833-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T CAT29838ATC TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426317
 2020-03-15 2020-04-15
 United States hCoV-19/USA/NY-Wadsworth-16480-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C1917T C3037T C14408T G20005A A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426319
 2020-03-15 2020-04-15
 United States hCoV-19/USA/NY-Wadsworth-16166-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C6573T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_427393
 2020-03-15 2020-04-18
 Taiwan hCoV-19/Taiwan/TSGH-06/2020
 G11083T G14277T G26144T

EPI_ISL_427553
 2020-03-15 2020-04-19
 United States hCoV-19/USA/NY-WCMP10A02P/2020
 ATT1- C241T C1059T C3037T C10015T C11916T C14408T C18744T C18998T A23403G G25563T G29540A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871R

EPI_ISL_427554
 2020-03-15 2020-04-19
 United States hCoV-19/USA/NY-WCMP10A05P/2020
 ATTAAAGGTT1- C241T C1059T C2028Y C3037T C14408T C22987G A23403G C25469T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871G

EPI_ISL_427555
 2020-03-15 2020-04-19
 United States hCoV-19/USA/NY-WCMP10A06P/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871K

EPI_ISL_427556
 2020-03-15 2020-04-19
 United States hCoV-19/USA/NY-WCMP10A12P/2020
 ATTAAAGGTTTATACCTT1- C241T C1059T A1972G C2156T C3037T C11916T C14408T C18998T A23403G G25563T G29540A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871C

EPI_ISL_427557
 2020-03-15 2020-04-19
 United States hCoV-19/USA/NY-WCMP10B03P/2020
 ATTA1- C241T C1059T C3037T C14408T A23403G G25563T C28821M AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871RG

EPI_ISL_427558
 2020-03-15 2020-04-19
 United States hCoV-19/USA/NY-WCMP10B07N/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_427559
 2020-03-15 2020-04-19
 United States hCoV-19/USA/NY-WCMP10B08P/2020
 C241T C1059T C3037T C14408T G21452T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871RGG

EPI_ISL_427560
 2020-03-15 2020-04-19
 United States hCoV-19/USA/NY-WCMP10B11P/2020
 ATT1- C241T C3037T C14408T A23403G A25505C GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871M

EPI_ISL_427561
 2020-03-15 2020-04-19
 United States hCoV-19/USA/NY-WCMP10B12P/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27005T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871RG

EPI_ISL_427562
 2020-03-15 2020-04-19
 United States hCoV-19/USA/NY-WCMP10C03P/2020
 ATTAAAGGTTTATAC1- C241T C1059T C3037T C14408T C16260T A23403G G25563T C28821A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871C

EPI_ISL_427563
 2020-03-15 2020-04-19
 United States hCoV-19/USA/NY-WCMP10C04P/2020
 C241T C1059T C3037T C14408T A14747G A20755C A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871RG

EPI_ISL_427564
 2020-03-15 2020-04-19
 United States hCoV-19/USA/NY-WCMP10C09P/2020
 C241T C3037T C14408T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871RGG

EPI_ISL_427565
 2020-03-15 2020-04-19
 United States hCoV-19/USA/NY-WCMP10C11P/2020
 ATTAAAGGTT1- C241T C3037T C14408T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871WG

EPI_ISL_427566
 2020-03-15 2020-04-19
 United States hCoV-19/USA/NY-WCMP10D06P/2020
 ATTA1- C241T C1059T C3037T C14408T G23311T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871RG

EPI_ISL_427567
 2020-03-15 2020-04-19
 United States hCoV-19/USA/NY-WCMP10D09P/2020
 AT1- C241T C1059T A2254G C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871RG

EPI_ISL_427568
 2020-03-15 2020-04-19
 United States hCoV-19/USA/NY-WCMP10D11P/2020
 ATTA1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871RG

EPI_ISL_427569
 2020-03-15 2020-04-19
 United States hCoV-19/USA/NY-WCMP10E02P/2020
 ATTAA1- C241T C1059T C2445T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871MG

EPI_ISL_427570
 2020-03-15 2020-04-19
 United States hCoV-19/USA/NY-WCMP10E06P/2020
 ATTAA1- C241T C1059T C3037T G9572A C11916T C14408T C18998T A23403G G25563T G29540A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871MG

EPI_ISL_427571
 2020-03-15 2020-04-19
 United States hCoV-19/USA/NY-WCMP10E07P/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871RGG

EPI_ISL_427572
 2020-03-15 2020-04-19
 United States hCoV-19/USA/NY-WCMP10F04P/2020
 C241T C3037T C14408T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871RG

EPI_ISL_427573
 2020-03-15 2020-04-19
 United States hCoV-19/USA/NY-WCMP10F06P/2020
 ATTAAAGGTTTATACCTTCC1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871C

EPI_ISL_427574
 2020-03-15 2020-04-19
 United States hCoV-19/USA/NY-WCMP10F09P/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871G

EPI_ISL_427575
 2020-03-15 2020-04-19
 United States hCoV-19/USA/NY-WCMP10F10P/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871RGG

EPI_ISL_427576
 2020-03-15 2020-04-19
 United States hCoV-19/USA/NY-WCMP10G05P/2020
 ATTAAAGGTTTA1- C241T C1059T C3037T C14408T G23311T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871M

EPI_ISL_427577
 2020-03-15 2020-04-19
 United States hCoV-19/USA/NY-WCMP10G06P/2020
 C5730T G11083T C14805T T17247C G18985T G26144T AAAA29871RGGG AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_427578
 2020-03-15 2020-04-19
 United States hCoV-19/USA/NY-WCMP10G10P/2020
 T2K C241T C1059T C3037T C7728T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871RG

EPI_ISL_427579
 2020-03-15 2020-04-19
 United States hCoV-19/USA/NY-WCMP10G11P/2020
 A1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871RG

EPI_ISL_427580
 2020-03-15 2020-04-19
 United States hCoV-19/USA/NY-WCMP10H01P/2020
 ATTAAAGGTTTA1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871C

EPI_ISL_427581
 2020-03-15 2020-04-19
 United States hCoV-19/USA/NY-WCMP10H04P/2020
 ATTAAAGG1- C241T C1059T C3037T C14408T A14747G A20755C A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871RG

EPI_ISL_427582
 2020-03-15 2020-04-19
 United States hCoV-19/USA/NY-WCMP10H08P/2020
 ATTAAAGGTTT1- C241T C3037T C7644T C14408T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872G

EPI_ISL_428253
 2020-03-15 2020-04-20
 United States hCoV-19/USA/WI-UW-157/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428254
 2020-03-15 2020-04-20
 United States hCoV-19/USA/WI-UW-158/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C14408T T15366C A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428255
 2020-03-15 2020-04-20
 United States hCoV-19/USA/WI-UW-159/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T A6584G G11161A C14408T T15366C A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428256
 2020-03-15 2020-04-20
 United States hCoV-19/USA/WI-UW-160/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C14408T T15366C A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428491
 2020-03-15 2020-04-21
 Taiwan hCoV-19/Taiwan/58/2020
 AT1- C241T C3037T C14408T A23403G G23856T GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_429116
 2020-03-15 2020-04-23
 Sweden hCoV-19/Sweden/20-08143/2020
 C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T T24311C GGG28881AAC

EPI_ISL_429162
 2020-03-15 2020-04-23
 Sweden hCoV-19/Sweden/20-50357/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T

EPI_ISL_429323
 2020-03-15 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH82/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429327
 2020-03-15 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH87/2020
 C241T C1059T C3037T T8788C C14408T A23403G G25563T G26951A

EPI_ISL_429328
 2020-03-15 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH88/2020
 ATG1605- A16417G C28253A

EPI_ISL_429329
 2020-03-15 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH89/2020
 C241T C1059T C3037T C14408T A23403G G25563T C29200T

EPI_ISL_429331
 2020-03-15 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH92/2020
 C241T C1059T C1302T C3037T C11074T C14408T A23403G G25563T

EPI_ISL_429813
 2020-03-15 2020-04-24
 Canada hCoV-19/Canada/NS_31/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A6400G C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_429814
 2020-03-15 2020-04-24
 Canada hCoV-19/Canada/NS_32/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A C4668T A5094G C26641T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_429815
 2020-03-15 2020-04-24
 Canada hCoV-19/Canada/NL_34/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6990T C8782T T10771C C17747T A17858G C18060T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_430140 MT627635
 2020-03-15 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S286/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_430180 MT632596
 2020-03-15 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S143/2020
 C8782T A11789G C17747T A17858G C18060T T28144C T29633C

EPI_ISL_430181 MT632621
 2020-03-15 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S144/2020
 A3492C C8782T A14199G C17747T A17858G C18060T T28144C

EPI_ISL_430182 MT632591
 2020-03-15 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S145/2020
 C8782T A14199G C17747T A17858G C18060T T28144C

EPI_ISL_431180
 2020-03-15 2020-04-29
 China hCoV-19/Fujian/IM3520002T/2020
 ATTAAAGGTTTATACCTTCC1- A26- C28T C241T C3037T C14408T A23403G G25088T GGG28881AAC -29805A ATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29833-

EPI_ISL_434689
 2020-03-15 2020-05-01
 United States hCoV-19/USA/MD-HP00010/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_434718
 2020-03-15 2020-05-01
 United States hCoV-19/USA/TX-HMH07/2020
 C241T C1059T C3037T C14408T G17808T A23403G G25563T C27964T

EPI_ISL_434720
 2020-03-15 2020-05-01
 United States hCoV-19/USA/TX-HMH09/2020
 C1960T C10623T G11083T A12744T C14805T C23707T G25396T G26144T

EPI_ISL_434721
 2020-03-15 2020-05-01
 United States hCoV-19/USA/TX-HMH010/2020
 C241T C313T C3037T G6362A C14408T A23403G GGG28881AAC

EPI_ISL_434725
 2020-03-15 2020-05-01
 United States hCoV-19/USA/TX-HMH015/2020
 C241T C3037T C14408T C15328T A23403G GGG28881AAC

EPI_ISL_435065
 2020-03-15 2020-05-02
 India hCoV-19/India/NCDC-01475/2020
 C241T C3037T A5961R T8022K T13408K C14408T A16281R C18877T A19430R T19432Y C22444T A23403G AG24389MS G25563T C26735T C28854T GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_435101
 2020-03-15 2020-05-02
 India hCoV-19/India/NCDC-01441/2020
 C884T G1397A G8653T G11083T T16993C T25461C A27191G T28688C G29742T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_435108
 2020-03-15 2020-05-02
 India hCoV-19/India/NCDC-01457/2020
 T76A T78K A2480G C2558T C9039M G9939K G11083T C14805T A16281R A17656G T18177W C21575T AG24389MS T25760Y G26144T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_435127
 2020-03-15 2020-05-03
 United Arab Emirates hCoV-19/United Arab Emirates/L1014/2020
 A18163G

EPI_ISL_435128
 2020-03-15 2020-05-03
 United Arab Emirates hCoV-19/United Arab Emirates/L1076/2020
 C241T C3037T G4255T G8653T C14408T A23403G A26507T A26530G G27746T

EPI_ISL_435132
 2020-03-15 2020-05-03
 United Arab Emirates hCoV-19/United Arab Emirates/L3779/2020
 C241T C313T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_435315
 2020-03-15 2020-05-04
 Vietnam hCoV-19/Vietnam/VNHN_0837/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C4002T G10097A C13536T C14184T C14408T C21058T A23403G C23731T GGG28881AAC AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_436224
 2020-03-15 2020-05-06
 Spain hCoV-19/Spain/Valencia129/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G4105T C14408T A20268G A23403G CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_437234
 2020-03-15 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0035/2020
 A187G C241T C3037T C14408T A15064C A23403G

EPI_ISL_437584
 2020-03-15 2020-05-11
 United States hCoV-19/USA/CA-SR0199/2020
 A161G C884T G1397A A5742T G8653T A10512G G11083T A12130G C16111T G22745A T28688C G29742T

EPI_ISL_437883 MT459882
 2020-03-15 2020-05-11
 Greece SARS-CoV-2/human/GRC/214_34505/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- ATG1605- C17898T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_437977
 2020-03-15 2020-05-12
 Austria hCoV-19/Austria/CeMM0120/2020
 A187G C241T C3037T G13193K C14408T T22521K A23403G AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_438040
 2020-03-15 2020-05-12
 Austria hCoV-19/Austria/CeMM0199/2020
 C241T A1140C C3037T C14408T A19652G A20268G T22521K A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_438041
 2020-03-15 2020-05-12
 Austria hCoV-19/Austria/CeMM0200/2020
 C241T C3037T G12832A C14408T T22521K A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_438042
 2020-03-15 2020-05-12
 Austria hCoV-19/Austria/CeMM0201/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_438043
 2020-03-15 2020-05-12
 Austria hCoV-19/Austria/CeMM0204/2020
 C241T C1059T C3037T C14408T A23403G G25563T G26428K A29865R AAAAAAAAAAAA29892-

EPI_ISL_438044
 2020-03-15 2020-05-12
 Austria hCoV-19/Austria/CeMM0205/2020
 C241T G285K C3037T G12832A T13227K C14408T C20457Y T22521K A23403G GGG28881AAC G29140K AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_438045
 2020-03-15 2020-05-12
 Austria hCoV-19/Austria/CeMM0206/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC AAA29901-

EPI_ISL_444525
 2020-03-15 2020-05-14
 United States hCoV-19/USA/IL-NM014/2020
 C241T C3037T C14408T G16912T A20268G A23403G

EPI_ISL_444532
 2020-03-15 2020-05-14
 United States hCoV-19/USA/IL-NM022/2020
 C8782T A17858G C18060T A24694T T28144C

EPI_ISL_444550
 2020-03-15 2020-05-14
 United States hCoV-19/USA/IL-NM054/2020
 C241T C1059T C3037T C11916T C14408T A23403G C25413T G25563T C28674T

EPI_ISL_445101
 2020-03-15 2020-05-15
 United States hCoV-19/USA/CA-SR0104/2020
 C241T C1059T C3037T C14408T A23403G G25563T C29253T

EPI_ISL_445269
 2020-03-15 2020-05-15
 Chile hCoV-19/Chile/Punta_Arenas_2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C14408T A23403G C25350T T29512K CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_445272
 2020-03-15 2020-05-15
 Chile hCoV-19/Chile/Valparaiso_1/2020
 ATTAAA1- C241T C934Y C3037T C14408T C15324T A23403G ATG29839GGA GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_445274
 2020-03-15 2020-05-15
 Chile hCoV-19/Chile/Rancagua_2/2020
 ATTAA1- ATG1605- C24034T TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_445275
 2020-03-15 2020-05-15
 Chile hCoV-19/Chile/Rancagua_3/2020
 TT2-G C241T C3037T G10265A C14408T A23403G GGG28881AAC G29398T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_445276
 2020-03-15 2020-05-15
 Chile hCoV-19/Chile/Rancagua_4/2020
 A1C AA4GT G8A T10C A12G A14T CT16TC CCCAGGT19A C241T C3037T G10265A C14408T C15154Y A23403G GGG28881AAC G29398T ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_445304
 2020-03-15 2020-05-15
 Chile hCoV-19/Chile/Santiago_25/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T G1319A C3037T C8389T A12506R C14408T A23403G G25563T CATGTGATTTTAATA29838T CT29854TC TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_447092 MT506537
 2020-03-15 2020-05-16
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20295/2020
 C64T C241T C1059T C3037T C14408T A23403G G25563T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_447614
 2020-03-15 2020-05-18
 Taiwan hCoV-19/Taiwan/NTU10/2020
 C241T C3037T T11032K C14408T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_448222
 2020-03-15 2020-05-19
 Vietnam hCoV-19/Vietnam/IBT-14Mar/2020
 ATTAAAGGTTTATACCTTC1- C241T C2416T C3037T A3580G C14408T C17104T A23403G G25563T C26028T C28320T GCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29786-

EPI_ISL_450045
 2020-03-15 2020-05-19
 United States hCoV-19/USA/NY-PV09357/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C1059T C3037T C14408T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450048
 2020-03-15 2020-05-19
 United States hCoV-19/USA/NY-PV09360/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T C3037T C14408T A23403G C26892T AGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29776-

EPI_ISL_450049
 2020-03-15 2020-05-19
 United States hCoV-19/USA/NJ-PV09361/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGA1- C241T C1059T C3037T G9738T C14408T A23403G G25563T AATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29770-

EPI_ISL_450050
 2020-03-15 2020-05-19
 United States hCoV-19/USA/NY-PV09362/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T C1059T C3037T C11916T C14408T C18998T A20553G A23403G G25563T G29540A AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450232
 2020-03-15 2020-05-20
 United States hCoV-19/USA/CA-UCSF-UC40/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC G29747A TGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29840-

EPI_ISL_450509
 2020-03-15 2020-05-21
 Lebanon hCoV-19/Lebanon/S2_759/2020
 CT40AC C241T C3037T C9118T C13381T C14408T A23403G G25563T

EPI_ISL_450580 MT506209
 2020-03-15 2020-05-21
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20369/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_450606 MT509674
 2020-03-15 2020-05-21
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20327/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_450803 MT507281
 2020-03-15 2020-05-22
 United States SARS-CoV-2/human/USA/PA-CDC-9081/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_451131
 2020-03-15 2020-05-23
 Australia hCoV-19/Australia/SAP111/2020
 ATT1- C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_451722 LR824293
 2020-03-15 2020-05-25
 Switzerland 100138
 C241T C3037T C3373A G3871K G11516A C14408T A19339M T19355W A19548R A22394M C22467M A23403G G24257T GGG28881AAC G29779K

EPI_ISL_451725 LR824282
 2020-03-15 2020-05-25
 Switzerland 100141
 C241T G1355T C3037T A5257W G10097R C10349Y C14408T A19298W G19780R C22347S A23403G C23731T GGG28881AAC

EPI_ISL_452285
 2020-03-15 2020-05-27
 United States hCoV-19/USA/MI-MDHHS-SC20411/2020
 C241T C1059T C3037T C14408T C19185T A23403G G25563T

EPI_ISL_452288
 2020-03-15 2020-05-27
 United States hCoV-19/USA/MI-MDHHS-SC20414/2020
 C241T C1059T C3037T A13453R C14408T A23403G G25563T

EPI_ISL_452347
 2020-03-15 2020-05-27
 China hCoV-19/Beijing/DT-travelGR01/2020
 C241T C3037T A23403G

EPI_ISL_452400
 2020-03-15 2020-05-27
 Spain hCoV-19/Spain/COV001993/2020
 C8782T T9477A C11674Y C14805T G25979T T28144C C28657T C28863T G29402T

EPI_ISL_452516
 2020-03-15 2020-05-27
 Spain hCoV-19/Spain/COV001385/2020
 C241T C3037T A12410G C14408T T19839C A23403G C28775Y GGG28881AAC

EPI_ISL_454029
 2020-03-15 2020-05-28
 Portugal hCoV-19/Portugal/PT0313/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C7101T C14408T A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454033
 2020-03-15 2020-05-28
 Portugal hCoV-19/Portugal/PT0317/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454035
 2020-03-15 2020-05-28
 Portugal hCoV-19/Portugal/PT0319/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3140T C14408T C19269T A23403G G24077T T28705C C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454036
 2020-03-15 2020-05-28
 Portugal hCoV-19/Portugal/PT0320/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454037
 2020-03-15 2020-05-28
 Portugal hCoV-19/Portugal/PT0321/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C7221T A8241G A10323G C14408T A23403G G24077T C28013A TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454039
 2020-03-15 2020-05-28
 Portugal hCoV-19/Portugal/PT0323/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- A1515G C9223T G11083T C14805T T17247C A17799G G26144T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454040
 2020-03-15 2020-05-28
 Portugal hCoV-19/Portugal/PT0324/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C7101T C14408T A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454045
 2020-03-15 2020-05-28
 Portugal hCoV-19/Portugal/PT0329/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G246T C3037T C14408T A23403G G24098T C25714T G27703T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454225
 2020-03-15 2020-05-28
 Portugal hCoV-19/Portugal/PT0501/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C8782T T9477A C14805T A21694G G25979T T28144C C28657T C28863T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454334
 2020-03-15 2020-05-28
 Portugal hCoV-19/Portugal/PT0611/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454335
 2020-03-15 2020-05-28
 Portugal hCoV-19/Portugal/PT0612/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454635 MT533232
 2020-03-15 2020-05-28
 United States SARS-CoV-2/human/USA/CA-CZB-1277/2020
 AT1- C241T C1059T C3037T A6398C C14408T A23403G G25563T TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_454945
 2020-03-15 2020-05-29
 China hCoV-19/Wuhan/HB-WH3-185/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- G10412T C14520A

EPI_ISL_454970
 2020-03-15 2020-05-29
 China hCoV-19/Wuhan/HB-WH5-225/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500-

EPI_ISL_454984
 2020-03-15 2020-05-29
 China hCoV-19/Wuhan/HB-WH6-247/2020
 C7834T

EPI_ISL_455381
 2020-03-15 2020-05-29
 China hCoV-19/Wuhan/HB-WH3-186/2020
 A8302G G10412T G12233T T20965- G27967T T28144C C28394A

EPI_ISL_455395
 2020-03-15 2020-05-29
 China hCoV-19/Wuhan/HB-WH6-241/2020
 G7133T TG14865- A27187G G27396T

EPI_ISL_455398
 2020-03-15 2020-05-29
 China hCoV-19/Wuhan/HB-WH6-245/2020
 G1577- G11083T TTG12909C G26144T

EPI_ISL_455449
 2020-03-15 2020-05-29
 Poland hCoV-19/Poland/PL_P36/2020
 C241T C1059T C3037T C3743T C14408T A23403G G25563T

EPI_ISL_455939
 2020-03-15 2020-06-01
 Thailand hCoV-19/Thailand/Bangkok-CONI-0145/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A895G C2942T G4390T C8782T C9598T G20134T G24047A G27877T T28144C

EPI_ISL_455941
 2020-03-15 2020-06-01
 Thailand hCoV-19/Thailand/Bangkok-CONI-0147/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- A895G C2942T G4390T C8782T C9598T G11083T A11782G A19651M G20134T G24047A T28144C C29741T

EPI_ISL_456127
 2020-03-15 2020-06-02
 Colombia hCoV-19/Colombia/INS-79911/2020
 G11083T A12986G C14805T C16969T C23707T G26144T G28899T

EPI_ISL_456149
 2020-03-15 2020-06-02
 Colombia hCoV-19/Colombia/INS-80123/2020
 C241T C3037T T6067C C14408T A23403G GGG28881AAC

EPI_ISL_456150
 2020-03-15 2020-06-02
 Colombia hCoV-19/Colombia/INS-79965/2020
 C241T C3037T C5812T C14408T A20268G A23403G G24368T

EPI_ISL_457724
 2020-03-15 2020-06-02
 Italy hCoV-19/Italy/4875/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- G213K C241T C3037T C14408T A23403G GGG28881AAC AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_457792 MT646065
 2020-03-15 2020-06-02
 United States SARS-CoV-2/human/USA/MD-HP00048/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_457807 MT646077
 2020-03-15 2020-06-02
 United States SARS-CoV-2/human/USA/MD-HP00065/2020
 T490A C3177T C6040T C8782T C8950T G12478A T18736C C24034T T26729C G28077C T28144C C28896G C29451T A29700G

EPI_ISL_457937
 2020-03-15 2020-06-02
 Oman hCoV-19/Oman/RESP-20-1857/2020
 C884T G1397A C7164T G8653T G11083T G13639A T28688C C29421T G29742T

EPI_ISL_457938
 2020-03-15 2020-06-02
 Oman hCoV-19/Oman/RESP-20-1976/2020
 C3099A C8782T C25083T T28144C G28878A G29348A G29742A

EPI_ISL_459857
 2020-03-15 2020-06-04
 Chile hCoV-19/Chile/Independencia-27991/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_459966
 2020-03-15 2020-06-05
 Morocco hCoV-19/Morocco/6888/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10427A C14408T C14786T C20389T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_460045
 2020-03-15 2020-06-05
 United States hCoV-19/USA/MN-MDH-103/2020
 ATTAAAGGTTTA1- C8782T A16275G C17747T A17858G C18060T T28144C AAAAAAAA29896-

EPI_ISL_460046
 2020-03-15 2020-06-05
 United States hCoV-19/USA/MN-MDH-104/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- A38R G127T C8782T C17747T A17858G C18060T A24694T T28144C TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_460047
 2020-03-15 2020-06-05
 United States hCoV-19/USA/MN-MDH-106/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T C3037T C8389T C14408T A23403G G25563T G27915A GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_460050
 2020-03-15 2020-06-05
 United States hCoV-19/USA/MN-MDH-125/2020
 ATTA1- C241T C3037T C14408T C16848T A23403G GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_460051
 2020-03-15 2020-06-05
 United States hCoV-19/USA/MN-MDH-126/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_460068
 2020-03-15 2020-06-05
 United States hCoV-19/USA/MN-MDH-84/2020
 ATTAAAGGTTTATACCT1- C8782T C17747T A17858G C18060T T28144C TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_460069
 2020-03-15 2020-06-05
 United States hCoV-19/USA/MN-MDH-85/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C313T C3037T C14408T G20247T A23403G GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_460072
 2020-03-15 2020-06-05
 United States hCoV-19/USA/MN-MDH-91/2020
 ATTA1- T490A C3177T C8782T C10279T C15960T G17679A T18736C G19684T C24034T T26729C C27635T G28077C T28144C A28874G A29700G CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_460073
 2020-03-15 2020-06-05
 United States hCoV-19/USA/MN-MDH-92/2020
 ATTAAA1- A2480G C2558T C3096T C9170T G11083T C14805T G26144T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_460075
 2020-03-15 2020-06-05
 United States hCoV-19/USA/MN-MDH-94/2020
 ATTAAAGGT1- ATG1605- A1856G TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_460076
 2020-03-15 2020-06-05
 United States hCoV-19/USA/MN-MDH-95/2020
 ATTAAAGG1- C241T C1059T C3037T C14408T A23403G G25563T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_460816
 2020-03-15 2020-06-06
 Netherlands hCoV-19/Netherlands/Overijssel_27/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3924T C14408T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_465728
 2020-03-15 2020-06-11
 United Kingdom hCoV-19/England/20120106104/2020
 C241T C3037T C14408T A23403G C27679T GGG28881AAC

EPI_ISL_465754
 2020-03-15 2020-06-11
 United Kingdom hCoV-19/England/20122032304/2020
 A2480G C2558T G11083T C14805T G26144T

EPI_ISL_465757
 2020-03-15 2020-06-11
 United Kingdom hCoV-19/England/20122054604/2020
 C241T C3037T C14408T G21119T A23403G G25429T

EPI_ISL_467152
 2020-03-15 2020-06-12
 Spain hCoV-19/Spain/COV001500/2020
 C241T C3037T C14408T A15002G A20268G A23403G G29734C

EPI_ISL_467608
 2020-03-15 2020-06-14
 United States hCoV-19/USA/NM-UNM-00027/2020
 C241T C313T C3037T A11348G C14408T A23403G GGG28881AAC

EPI_ISL_467812 MT614524
 2020-03-15 2020-06-15
 United States SARS-CoV-2/human/USA/CA-QDX-129/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7765A C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467825 MT614457
 2020-03-15 2020-06-15
 United States SARS-CoV-2/human/USA/CA-QDX-21/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T A3632G A10260G G11083T C14805T G25218T G26144T C28531T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467827 MT614459
 2020-03-15 2020-06-15
 United States SARS-CoV-2/human/USA/CA-QDX-33/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C6312A G11083T C13730T C23929T C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467828 MT614460
 2020-03-15 2020-06-15
 United States SARS-CoV-2/human/USA/CA-QDX-34/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T A2018G C3037T T3628C C14408T G19872T A23403G C25549T G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467829 MT614461
 2020-03-15 2020-06-15
 United States SARS-CoV-2/human/USA/CA-QDX-36/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4776T C8782T C17747T A17858G C18060T G28086T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467830 MT614462
 2020-03-15 2020-06-15
 United States SARS-CoV-2/human/USA/CA-QDX-38/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6312A C8139T G11083T C13730T C23929T C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467834 MT614466
 2020-03-15 2020-06-15
 United States SARS-CoV-2/human/USA/CA-QDX-45/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1667G A6950G C8782T G13007A C17747T A17858G C18060T A24694T C25207T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467836 MT614468
 2020-03-15 2020-06-15
 United States SARS-CoV-2/human/USA/CA-QDX-48/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17747T A17858G C18060T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467837 MT614469
 2020-03-15 2020-06-15
 United States SARS-CoV-2/human/USA/CA-QDX-50/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6463T T9172C A10948G C14408T G17427T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467838 MT614470
 2020-03-15 2020-06-15
 United States SARS-CoV-2/human/USA/CA-QDX-51/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T5356C C6312A G11083T C13730T C23929T C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467843 MT614475
 2020-03-15 2020-06-15
 United States SARS-CoV-2/human/USA/CA-QDX-79/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1855T C8782T C17747T A17858G C18060T A24694T C26985T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467859 MT614480
 2020-03-15 2020-06-15
 United States SARS-CoV-2/human/USA/MA-QDX-47/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T T10288A C14408T G19398T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467860 MT614481
 2020-03-15 2020-06-15
 United States SARS-CoV-2/human/USA/MA-QDX-54/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G15760A A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467861 MT614482
 2020-03-15 2020-06-15
 United States SARS-CoV-2/human/USA/MA-QDX-59/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C14408T A23403G G25563T G26233T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467863 MT614484
 2020-03-15 2020-06-15
 United States SARS-CoV-2/human/USA/MA-QDX-64/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21811T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467865 MT614486
 2020-03-15 2020-06-15
 United States SARS-CoV-2/human/USA/MA-QDX-69/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G20578T C21575T A23403G A26530G G28739T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467869 MT614489
 2020-03-15 2020-06-15
 United States SARS-CoV-2/human/USA/MI-QDX-28/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T C26313T C27879T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467870 MT614490
 2020-03-15 2020-06-15
 United States SARS-CoV-2/human/USA/MI-QDX-52/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467871 MT614491
 2020-03-15 2020-06-15
 United States SARS-CoV-2/human/USA/MI-QDX-58/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A G922A C3177T C8782T T18736C A22003G C24034T T26729C G28077C T28144C A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467872 MT614492
 2020-03-15 2020-06-15
 United States SARS-CoV-2/human/USA/MI-QDX-70/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467877 MT614540
 2020-03-15 2020-06-15
 United States SARS-CoV-2/human/USA/NJ-QDX-141/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467879 MT614494
 2020-03-15 2020-06-15
 United States SARS-CoV-2/human/USA/NJ-QDX-23/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467884 MT614542
 2020-03-15 2020-06-15
 United States SARS-CoV-2/human/USA/NY-QDX-112/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G21123T A23403G T23986C G25563T G28077C A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467888 MT614546
 2020-03-15 2020-06-15
 United States SARS-CoV-2/human/USA/NY-QDX-134/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G5148T C11916T C14408T C18998T A23403G G25563T G29540A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467892 MT614550
 2020-03-15 2020-06-15
 United States SARS-CoV-2/human/USA/NY-QDX-140/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10851T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467894 MT614552
 2020-03-15 2020-06-15
 United States SARS-CoV-2/human/USA/NY-QDX-143/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C6926T C11916T C14408T C18998T A23403G G25563T G29540A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467896 MT614554
 2020-03-15 2020-06-15
 United States SARS-CoV-2/human/USA/NY-QDX-147/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T AAGTCATTT686- C1059T C3037T C3294T C14408T C16616T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467898 MT614500
 2020-03-15 2020-06-15
 United States SARS-CoV-2/human/USA/NY-QDX-24/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A20755C A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467899 MT614501
 2020-03-15 2020-06-15
 United States SARS-CoV-2/human/USA/NY-QDX-35/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T AAGTCATTT686- C1059T C3037T C8092T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467906 MT614507
 2020-03-15 2020-06-15
 United States SARS-CoV-2/human/USA/TX-QDX-25/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C7528T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467907 MT614508
 2020-03-15 2020-06-15
 United States SARS-CoV-2/human/USA/TX-QDX-37/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T C27964T G29140T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_468390 MT628126
 2020-03-15 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1415/2020
 ATT1- C36M C241T C1059T C3037T C14408T A23403G G25563T T29458Y

EPI_ISL_468760
 2020-03-15 2020-06-17
 Chile hCoV-19/Chile/Chillan-25338/2020
 C241T C3037T G10265A C14408T A23403G GGG28881AAC

EPI_ISL_469241 MT630421
 2020-03-15 2020-06-15
 Saudi Arabia SARS-CoV-2/human/SAU/4637/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T A918T G2447T C3037T C14408T C18877T C22444T A23403G T25551C G25563T C26735T C28854T C29541T TTCTT29855WWMWW GG29861RR G29864R TGA29867WSW

EPI_ISL_469242 MT630422
 2020-03-15 2020-06-15
 Saudi Arabia SARS-CoV-2/human/SAU/42952/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T C14408T A23403G T25655C C26299T GGG28881AAC TGA29867WSW

EPI_ISL_469243 MT630423
 2020-03-15 2020-06-15
 Saudi Arabia SARS-CoV-2/human/SAU/85613/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C8782T C16466Y G22468T G28027T T28144C G28878A G29742A ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_469244 MT630424
 2020-03-15 2020-06-15
 Saudi Arabia SARS-CoV-2/human/SAU/85715/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T C14408T C18877T A23403G G25563T C26533T C26735T ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_469245 MT630425
 2020-03-15 2020-06-15
 Saudi Arabia SARS-CoV-2/human/SAU/85790/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T C14408T A23403G GGG28881AAC C29200T C29750T TT29858YW GG29861RR G29864R ATGA29866MWRW

EPI_ISL_469246 MT630426
 2020-03-15 2020-06-15
 Saudi Arabia SARS-CoV-2/human/SAU/85791/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T C14408T A23403G GGG28881AAC C29200T C29750T ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_469247 MT630427
 2020-03-15 2020-06-15
 Saudi Arabia SARS-CoV-2/human/SAU/86267/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C1191A C3037T C14408T A23403G C23613T C28453T GGG28881AAC G29868S

EPI_ISL_469248 MT630428
 2020-03-15 2020-06-15
 Saudi Arabia SARS-CoV-2/human/SAU/86327/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T C14408T A23403G GGG28881AAC T29859W GG29861RS GAA29864SMM GA29868SW

EPI_ISL_469249 MT630429
 2020-03-15 2020-06-15
 Saudi Arabia SARS-CoV-2/human/SAU/86650/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T C6402T C14408T C18877T A23403G G25563T C26735T G29868S

EPI_ISL_469250 MT630430
 2020-03-15 2020-06-15
 Saudi Arabia SARS-CoV-2/human/SAU/832279/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T C3157T C7006T C14408T C18877T A23403G G25563T C26735T ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_469251 MT630431
 2020-03-15 2020-06-15
 Saudi Arabia SARS-CoV-2/human/SAU/85790C/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T C14408T A23403G GGG28881AAC C29200T C29750T ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_469252 MT630432
 2020-03-15 2020-06-15
 Saudi Arabia SARS-CoV-2/human/SAU/85791C/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T C14408T A23403G GGG28881AAC C29200T C29750T ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_470540
 2020-03-15 2020-06-18
 United States hCoV-19/USA/WI-WSLH-200011/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_474960
 2020-03-15 2020-06-23
 Israel hCoV-19/Israel/CVL-n-6751/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_474965
 2020-03-15 2020-06-23
 Israel hCoV-19/Israel/CVL-n-5939/2020
 C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC

EPI_ISL_474969
 2020-03-15 2020-06-23
 Israel hCoV-19/Israel/CVL-n-6100/2020
 T514C T1606C C17410T C19380T

EPI_ISL_474973
 2020-03-15 2020-06-23
 Israel hCoV-19/Israel/CVL-n-5853/2020
 C241T C1059T C3037T A8651C C14408T A23403G G25563T

EPI_ISL_474974
 2020-03-15 2020-06-23
 Israel hCoV-19/Israel/CVL-n-6035/2020
 C241T C3037T A8651C C14408T A23403G G23958C GGG28881AAC

EPI_ISL_474975
 2020-03-15 2020-06-23
 Israel hCoV-19/Israel/CVL-n-6108/2020
 C241T C3037T C12049T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_474979
 2020-03-15 2020-06-23
 Israel hCoV-19/Israel/CVL-n-5826/2020
 C313T C8802T C10755T

EPI_ISL_474980
 2020-03-15 2020-06-23
 Israel hCoV-19/Israel/CVL-n-6005/2020
 G1397A A8651C G11083T C16247T C24865T T28688C G29742T

EPI_ISL_474981
 2020-03-15 2020-06-23
 Israel hCoV-19/Israel/CVL-n-6140/2020
 C241T C2416T C3037T C14408T C19884T A23403G G25563T C26447A

EPI_ISL_474986
 2020-03-15 2020-06-23
 Israel hCoV-19/Israel/CVL-n-5856/2020
 T1864G C6312A C13730T A24162G C28311T

EPI_ISL_474987
 2020-03-15 2020-06-23
 Israel hCoV-19/Israel/CVL-n-6102/2020
 C241T C1059T C3037T G9928A C14408T A23403G G25563T

EPI_ISL_474988
 2020-03-15 2020-06-23
 Israel hCoV-19/Israel/CVL-n-6118/2020
 A4- C241T C3037T C14408T C18877T A23403G G25563T

EPI_ISL_474992
 2020-03-15 2020-06-23
 Israel hCoV-19/Israel/CVL-n-6106/2020
 -7T C241T C313T C3037T C14408T A23403G C24809T G28079T GGG28881AAC G29751C

EPI_ISL_474993
 2020-03-15 2020-06-23
 Israel hCoV-19/Israel/CVL-n-6126/2020
 C241T C1059T C1387T T2128C C3037T C14408T A20755C A23403G G25563T

EPI_ISL_474994
 2020-03-15 2020-06-23
 Israel hCoV-19/Israel/CVL-n-6131/2020
 C241T C3037T C14408T C15852T C16699T C17249T A23403G C27046T GGG28881AAC A29865G

EPI_ISL_474999
 2020-03-15 2020-06-23
 Israel hCoV-19/Israel/CVL-n-6104/2020
 C241T C313T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_475000
 2020-03-15 2020-06-23
 Israel hCoV-19/Israel/CVL-n-6105/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_475001
 2020-03-15 2020-06-23
 Israel hCoV-19/Israel/CVL-n-6110/2020
 C241T C1059T C3037T C14408T A23403G G25563T A27773G

EPI_ISL_475002
 2020-03-15 2020-06-23
 Israel hCoV-19/Israel/CVL-n-6132/2020
 T1864G C6312A C13730T C28311T

EPI_ISL_475003
 2020-03-15 2020-06-23
 Israel hCoV-19/Israel/CVL-n-6136/2020
 C241T C1059T C3037T G4504T A10994G C14408T A23403G G25563T

EPI_ISL_475010
 2020-03-15 2020-06-23
 Israel hCoV-19/Israel/CVL-n-6112/2020
 C66A C241T C1059T C3037T C4048T C11916T C14408T C17304T C18998T A20755T C22802T A23403G G25563T C28256A G29540A

EPI_ISL_475013
 2020-03-15 2020-06-23
 Israel hCoV-19/Israel/CVL-n-5908/2020
 C241T C3037T C4321T C14408T A23403G T27212C G27214T GGG28881AAC

EPI_ISL_475014
 2020-03-15 2020-06-23
 Israel hCoV-19/Israel/CVL-n-5999/2020
 C241T C14408T C17470T C18877T A22805T A23403G G25563T C26088T

EPI_ISL_475015
 2020-03-15 2020-06-23
 Israel hCoV-19/Israel/CVL-n-6142/2020
 C241T C3037T C14408T C22802A A23403G GGG28881AAC

EPI_ISL_475018
 2020-03-15 2020-06-23
 Israel hCoV-19/Israel/CVL-n-5936/2020
 C241T C1059T C3037T C14408T A23403G G25563T C25916T

EPI_ISL_475019
 2020-03-15 2020-06-23
 Israel hCoV-19/Israel/CVL-n-5991/2020
 C241T C1059T C3037T C5575T C11916T C14408T G15502T C16949T C18998T A23403G G25563T G29540A C29754T

EPI_ISL_475021
 2020-03-15 2020-06-23
 Israel hCoV-19/Israel/CVL-n-6134/2020
 C241T C3037T T4885C C7851T C14408T C18683T C18877T A21137G C22326T A23403G G25563T

EPI_ISL_475022
 2020-03-15 2020-06-23
 Israel hCoV-19/Israel/CVL-n-6157/2020
 G210T C241T C1059T T1877C C3037T C14408T A20755C A23403G G24095T G25563T

EPI_ISL_476780
 2020-03-15 2020-06-25
 United States hCoV-19/USA/CA-CZB-1763/2020
 AT1-

EPI_ISL_476801
 2020-03-15 2020-06-26
 China hCoV-19/Hong Kong/VM20003443/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C9857T G11083T C14408T A23403G CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_476816
 2020-03-15 2020-06-26
 Singapore hCoV-19/Singapore/482/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476822
 2020-03-15 2020-06-26
 Benin hCoV-19/Benin/197/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A80W A82M G86K GTG88SKR C241T C3037T C14408T C15324T G23311T A23403G C29200T TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_477291
 2020-03-15 2020-06-29
 United States hCoV-19/USA/MN-MDH-1202/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C335T C8782T C17747T A17858G C18060T A24694T T28144C CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_478536
 2020-03-15 2020-06-30
 United Kingdom hCoV-19/England/NORT-28420C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C14408T C21575T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479861
 2020-03-15 2020-07-01
 Japan hCoV-19/Japan/PG-0138/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C6312A G11083T C13730T A14273T C23929T C28311T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_479881
 2020-03-15 2020-07-01
 Japan hCoV-19/Japan/PG-0172/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C11752T C19170A G28975T TGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29840-

EPI_ISL_479924
 2020-03-15 2020-07-01
 Japan hCoV-19/Japan/PG-0227/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- T4402C G5062T C8782T C16997T T18150C T28144C G29742T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_480379 MT772546
 2020-03-15 2020-07-01
 United States SARS-CoV-2/human/USA/WI-UW-397/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T18603C G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480380 MT772547
 2020-03-15 2020-07-01
 United States SARS-CoV-2/human/USA/WI-UW-398/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T809A C1059T C3037T C14408T C16017T C16616T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480998
 2020-03-15 2020-07-02
 Spain hCoV-19/Spain/Donostia-San_Sebastian_COV003225/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_482472
 2020-03-15 2020-07-03
 Canada hCoV-19/Canada/NB_55/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G C9223T G11083T C14805T T17247C G26144T T26318C G28979T ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_482473
 2020-03-15 2020-07-03
 Canada hCoV-19/Canada/NB_56/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G C25433T ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_482475
 2020-03-15 2020-07-03
 Canada hCoV-19/Canada/MB_59/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G15760A A23403G G25563T ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_482999
 2020-03-15 2020-07-06
 United States hCoV-19/USA/MN-MDH-1278/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- G11083T G26144T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_483000
 2020-03-15 2020-07-06
 United States hCoV-19/USA/MN-MDH-1279/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C3037T C14408T A23403G G25793T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_483001
 2020-03-15 2020-07-06
 United States hCoV-19/USA/MN-MDH-1280/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G127T C8782T A17858G C18060T A24694T T28144C TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_483546
 2020-03-15 2020-07-07
 Bahrain hCoV-19/Bahrein/BAH-05/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1397A G2246A C9246T G11083T T28688C G29742T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_483923
 2020-03-15 2020-07-08
 United Kingdom hCoV-19/England/GSTT-265D1D8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C25350T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485848 MT739454 MT913067
 2020-03-15 2020-07-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0547/2020
 ATTAAAGG1- C241T AAGTCATTT686- C1059T C3037T C14408T A23403G G25563T A26433G AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_486422
 2020-03-15 2020-07-10
 Latvia hCoV-19/Latvia/039/2020
 C241T C1059T C3037T C3743T C14408T A23403G T23482C G25563T

EPI_ISL_488628
 2020-03-15 2020-07-14
 United Kingdom hCoV-19/England/NORT-28422A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T T25202K G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488707
 2020-03-15 2020-07-14
 United Kingdom hCoV-19/England/NORT-28421B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G T25202K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488749
 2020-03-15 2020-07-14
 United Kingdom hCoV-19/England/NORT-281506/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G C5170T C9223T G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488786
 2020-03-15 2020-07-14
 United Kingdom hCoV-19/England/NORT-281454/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488797
 2020-03-15 2020-07-14
 United Kingdom hCoV-19/England/NORT-281463/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3621A C14408T A23403G G25429T C27213T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488801
 2020-03-15 2020-07-14
 United Kingdom hCoV-19/England/NORT-281524/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T G26144T C28826T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491444
 2020-03-15 2020-07-17
 Costa Rica hCoV-19/Costa Rica/INC-0032/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C241T C3037T C6696T C10702T C14408T A20268G A23403G C26461T CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

EPI_ISL_491445
 2020-03-15 2020-07-17
 Costa Rica hCoV-19/Costa Rica/INC-0033/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C3037T C6696T C10702T C14408T A20268G A23403G C26461T CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

EPI_ISL_491447
 2020-03-15 2020-07-17
 Costa Rica hCoV-19/Costa Rica/INC-0035/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- C241T C1059T C3037T C14408T A23403G G25563T CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

EPI_ISL_492978
 2020-03-15 2020-07-20
 Singapore hCoV-19/Singapore/480/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493328
 2020-03-15 2020-07-21
 Italy hCoV-19/Italy/INMI16/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATC1- C241T C1059T C3037T T13006C C14408T A23403G G25563T C25688T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_494575
 2020-03-15 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1384/2020
 ATTA1- A161G C884T G1397A A5742T G8653T A10512G G11083T A12130G C16111T G22745A T28688C G29742T

EPI_ISL_495610
 2020-03-15 2020-07-23
 United States hCoV-19/USA/MN-MDH-1311/2020
 ATTAAAG1- C241T C3037T A8072G C13384T C14408T A23403G GGG28881AAC AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_497796
 2020-03-15 2020-07-25
 China hCoV-19/Hong Kong/HKU-200723-029/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G C9223T G11083T G12565T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_497850
 2020-03-15 2020-07-25
 China hCoV-19/Hong Kong/HKU-200723-083/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T C23707T A25056G G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498018
 2020-03-15 2020-07-26
 South Korea hCoV-19/Korea/KCDC2117/2020
 G5572T G11083T G14055T C14805T G26144T

EPI_ISL_498020
 2020-03-15 2020-07-26
 South Korea hCoV-19/Korea/KCDC2119/2020
 ATTA1- C2450T G5572T G11083T C14805T G26144T

EPI_ISL_498021
 2020-03-15 2020-07-26
 South Korea hCoV-19/Korea/KCDC2120/2020
 G5572T G11083T G13076T G14055T C14805T G26144T

EPI_ISL_498022
 2020-03-15 2020-07-26
 South Korea hCoV-19/Korea/KCDC2121/2020
 ATTAAAGGTTTATAC1- G5572T G11083T G14055T C14805T G26144T

EPI_ISL_498023
 2020-03-15 2020-07-26
 South Korea hCoV-19/Korea/KCDC2122/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- G5572T G11083T C14805T G26144T

EPI_ISL_498024
 2020-03-15 2020-07-26
 South Korea hCoV-19/Korea/KCDC2123/2020
 ATTA1- C2450T G5572T G11083T C14805T G26144T A29873T

EPI_ISL_498025
 2020-03-15 2020-07-26
 South Korea hCoV-19/Korea/KCDC2124/2020
 ATTAA1- C1387T G5572T G11083T C14805T G26144T

EPI_ISL_498026
 2020-03-15 2020-07-26
 South Korea hCoV-19/Korea/KCDC2125/2020
 ATT1- C241T C3037T C14408T C15324T A23403G

EPI_ISL_498027
 2020-03-15 2020-07-26
 South Korea hCoV-19/Korea/KCDC2126/2020
 ATT1- G5572T G7553A G11083T C14805T C19318T G19919A G26144T G28805T

EPI_ISL_498028
 2020-03-15 2020-07-26
 South Korea hCoV-19/Korea/KCDC2127/2020
 AT1- G5572T G11083T G14055T C14805T G26144T

EPI_ISL_498029
 2020-03-15 2020-07-26
 South Korea hCoV-19/Korea/KCDC2128/2020
 ATTA1- A2480G C2558T G11083T C14805T G26144T G27703T

EPI_ISL_499736
 2020-03-15 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A6734/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T G14580T A23403G C29870A

EPI_ISL_499753
 2020-03-15 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A68E6/2020
 ATTAAAG1- G1820A A2480G C2558T T8599C G11083T C14805T G26144T A26759C C29870A

EPI_ISL_499769
 2020-03-15 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A6AB3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C13862T C14408T T14742A A23403G C25854T C28836T

EPI_ISL_500596
 2020-03-15 2020-07-29
 Australia hCoV-19/Australia/NSW2004/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3411T C14408T A23403G C26256T C29668T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_507052
 2020-03-15 2020-08-03
 United Kingdom hCoV-19/England/LOND-124D0A8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23403G C26534T GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_507291
 2020-03-15 2020-08-03
 Russia hCoV-19/Russia/StPetersburg-RII3524VR4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C7851T C8645T C14408T A23403G G25563T C26333T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_508771 MT834613
 2020-03-15 2020-08-04
 United States SARS-CoV-2/human/USA/FL-BPHL-0567/2020
 AT1- C241T C1059T C3037T C14408T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_508773 MT834615
 2020-03-15 2020-08-04
 United States SARS-CoV-2/human/USA/FL-BPHL-0569/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T G17014T C18877T A23403G G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_508864
 2020-03-15 2020-08-04
 Switzerland hCoV-19/Switzerland/1000482982/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T C15324T A23403G TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_508865
 2020-03-15 2020-08-04
 Switzerland hCoV-19/Switzerland/1000482983/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- C241T C3037T C14408T C15324T C22088T A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_508867
 2020-03-15 2020-08-04
 Switzerland hCoV-19/Switzerland/1000482985/2020
 A4T C241T C3037T C14408T C15324T A23403G AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_508868
 2020-03-15 2020-08-04
 Switzerland hCoV-19/Switzerland/1000483258/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T C15324T A23403G AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_508877
 2020-03-15 2020-08-04
 France hCoV-19/France/ARA09178/2020
 ATTAAA1- C241T C3037T C14408T C15324T A15860G A23403G AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_508878
 2020-03-15 2020-08-04
 France hCoV-19/France/ARA09193/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTG1- C241T C3037T C14408T A23403G G25429T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_509501
 2020-03-15 2020-08-05
 Australia hCoV-19/Australia/NSW2142/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17747T A17858G C18060T A24694T T28144C CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_509502
 2020-03-15 2020-08-05
 Australia hCoV-19/Australia/NSW2143/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17747T A17858G C18060T A24694T T28144C CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_509504
 2020-03-15 2020-08-05
 Australia hCoV-19/Australia/NSW2152/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17747T A17858G C18060T A24694T T28144C CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_509618
 2020-03-15 2020-08-05
 Spain hCoV-19/Spain/COV001542/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C8782T T9477A C14805T G23868T G25979T T28144C C28292A C28657T C28863T G29332T C29870A

EPI_ISL_509619
 2020-03-15 2020-08-05
 Spain hCoV-19/Spain/COV001980/2020
 ATTAAAGGTTTA1- G2418A G11083T A16815R G26144T T27991C CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_509620
 2020-03-15 2020-08-05
 Spain hCoV-19/Spain/COV001981/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C8782T T9477A C11674T C14805T G25979T G27112A T28144C C28657T C28863T G29402T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_509621
 2020-03-15 2020-08-05
 Spain hCoV-19/Spain/COV001984/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- A2480R C2558Y C6449Y C8782Y G11083K G13617K C14805Y C21614Y G22051K C23280Y G23405R C26088Y G26144K T28144Y AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_509624
 2020-03-15 2020-08-05
 Spain hCoV-19/Spain/COV001989/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C3704T G11083T C14805T C23707T G26144T T27384C AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_509696 MT844048
 2020-03-15 2020-08-05
 Guatemala SARS-CoV-2/human/GTM/CDC-1228/2020
 C241T C14408T A20268G A23403G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_509697 MT844049
 2020-03-15 2020-08-05
 Guatemala SARS-CoV-2/human/GTM/CDC-1230/2020
 C241T C3037T C14408T A20268G A23403G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_509698 MT844031
 2020-03-15 2020-08-05
 Guatemala SARS-CoV-2/human/GTM/CDC-1231/2020
 C241T C3037T C14408T A20268G A23403G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_509710 MT844029
 2020-03-15 2020-08-05
 Guatemala SARS-CoV-2/human/GTM/CDC-1229/2020
 C241T A1388R C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_511040
 2020-03-15 2020-08-07
 Portugal hCoV-19/Portugal/PT0781/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511041
 2020-03-15 2020-08-07
 Portugal hCoV-19/Portugal/PT0782/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A20268G A23403G G29734C TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511452
 2020-03-15 2020-08-07
 Portugal hCoV-19/Portugal/PT1493/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3140T A8590G C14408T A23403G G24077T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511460
 2020-03-15 2020-08-07
 Portugal hCoV-19/Portugal/PT1501/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C9711T C14408T A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511473
 2020-03-15 2020-08-07
 Portugal hCoV-19/Portugal/PT1514/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C1059T C3037T A13712G C14408T A20676G A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511474
 2020-03-15 2020-08-07
 Portugal hCoV-19/Portugal/PT1515/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511893
 2020-03-15 2020-08-10
 Vietnam hCoV-19/Vietnam/VNHN_0847/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G1440A G2891A C4655T G8422A G9983A G20578T C21077T C22323T C29546A A29880T

EPI_ISL_513428 MT886302
 2020-03-15 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0015/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAA1- C241T C3037T C14408T C22450T A23403G AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513431 MT886305
 2020-03-15 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0018/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAA1- C241T C3037T C14408T C22450T A23403G A25864G AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513433 MT886307
 2020-03-15 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0020/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAA1- C241T C1059T C3037T C14408T A23403G G25563T AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513436 MT886310
 2020-03-15 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0024/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAA1- C241T C3037T C14408T C22450T A23403G AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513438 MT886312
 2020-03-15 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0026/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAA1- C241T C1059T C3037T C14408T A23403G G25563T C27707T C29253T AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513441 MT886315
 2020-03-15 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0029/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAA1- C241T C2416T C3037T C4755T C14408T A22525G A23403G G25563T C29774T AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513452 MT886326
 2020-03-15 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0040/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATT1- C241T C3037T C14408T A23403G AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513454 MT886328
 2020-03-15 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0042/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAA1- C241T C3037T C14408T C22450T A23403G A25864G AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513468 MT886342
 2020-03-15 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0057/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAA1- C241T C3037T C14408T C22450T A23403G A25864G AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_514140 MT890277
 2020-03-15 2020-08-14
 United States SARS-CoV-2/human/USA/FL-BPHL-0794/2020
 AT1- C241T GTTATG515- C3037T C14408T C18877T A23403G G25563T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_515300
 2020-03-15 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0013/2020
 ATT1- ATG1605- C5892A C20270T C22264T G26109A A29683T

EPI_ISL_515301
 2020-03-15 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0014/2020
 AT1- G27358T C27847T G29711T

EPI_ISL_515302
 2020-03-15 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0015/2020
 ATTAAA1- G27358T C27847T G29711T

EPI_ISL_515303
 2020-03-15 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0016/2020
 AT1- C8782T C17747T A17858G C18060T C27641T T28144C G29781T

EPI_ISL_515304
 2020-03-15 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0017/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C8782T A10055G C10416T C16247T C17747T A17858G C18060T T28144C

EPI_ISL_515305
 2020-03-15 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0018/2020
 ATT1- C241T C3037T C14408T C18877T A23403G G25563T G25855T AAAAAA29898-

EPI_ISL_515306
 2020-03-15 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0019/2020
 ATT1- C241T C1059T C3037T C10582T C14408T A23403G G25563T

EPI_ISL_516269
 2020-03-15 2020-08-20
 United States hCoV-19/USA/MI-MDHHS-SC21542/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C8299T C12754T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_523470
 2020-03-15 2020-08-26
 Netherlands hCoV-19/Netherlands/un-EMC-715/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1457T C1594T C3037T C4021T C11109T C14408T A23403G G25563T C29743T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_524651
 2020-03-15 2020-08-28
 United Kingdom hCoV-19/England/LOND-126033D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G370A C3037T C14408T C18877T A23403G G25563T A27262M CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524663
 2020-03-15 2020-08-28
 United Kingdom hCoV-19/England/LOND-1260300/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T A8207G G11083T C14805T T20000C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524670
 2020-03-15 2020-08-28
 United Kingdom hCoV-19/England/LOND-126034C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1350T A2480G C2558T G11083T C14805T A19304G G26144T G29260A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524673
 2020-03-15 2020-08-28
 United Kingdom hCoV-19/England/LOND-126035B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1350T C1912T A2480G C2558T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525614
 2020-03-15 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-16307-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_526943
 2020-03-15 2020-09-02
 Denmark hCoV-19/Faroe Islands/HFS-30/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7834T C14408T G16117T A23403G AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_527008
 2020-03-15 2020-09-03
 Australia hCoV-19/Australia/NSW2144/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G C9223T G11083T G12565T C14805T T17247C G26144T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_528095
 2020-03-15 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42191355/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- A187G C241T C3037T C14408T A23403G T27653C C28708T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528096
 2020-03-15 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42191430/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T C17285T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528097
 2020-03-15 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42191432/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T C17285T G21578T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528099
 2020-03-15 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42191497/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C313T C3037T C14408T A23403G GGG28881AAC ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_528100
 2020-03-15 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42191545/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_528103
 2020-03-15 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42191605/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C8964T G9856T G11083T C14805T T17247C C19983T G21604T G26144T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528104
 2020-03-15 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42191670/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G C29550T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528105
 2020-03-15 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42191689/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T C15324T A23403G G25996T G28690T AATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29849-

EPI_ISL_528106
 2020-03-15 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42191693/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T C15324T A23403G TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_528109
 2020-03-15 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42191739/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T C15324T A23403G TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_528110
 2020-03-15 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42191742/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T G2354A C3037T C14408T A23403G T26187C G29162T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_528111
 2020-03-15 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42191744/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T T12739C C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528112
 2020-03-15 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42191751/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T G5246A C12213T C14408T C15324T A23403G AATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29849-

EPI_ISL_528114
 2020-03-15 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42191841/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1102T C2416T C3037T C14408T C21575T A23403G G25563T TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_528115
 2020-03-15 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42191874/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T C15324T C20594T A23403G ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_528117
 2020-03-15 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42191950/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T C15324T G19162T A23403G TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_528118
 2020-03-15 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42191965/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T C15324T C21110T A23403G A23732G TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_528120
 2020-03-15 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42192008/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C643T C3037T C3787T C14408T C15324T A23403G TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_528121
 2020-03-15 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42192010/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T C15324T A23403G T29014C TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_528122
 2020-03-15 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42192025/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C7735T C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528123
 2020-03-15 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42192039/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T T10509C C14408T C15324T A23403G C26142T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_528124
 2020-03-15 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42192047/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C8293T C14408T T18488C A23403G T24739C A26530G TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_530036
 2020-03-15 2020-09-10
 Spain hCoV-19/Spain/MD-LP106-3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G G29734C ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_535795
 2020-03-15 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00219619/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25217T G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535796
 2020-03-15 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00219966/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C17135T C23191T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535797
 2020-03-15 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00220289/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T C14408T C18877T A23403G G25563T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_535798
 2020-03-15 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00220369/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G19677T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535799
 2020-03-15 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00220546/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G T27919C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535800
 2020-03-15 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00220634/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535801
 2020-03-15 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00220733/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13730T C14408T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535802
 2020-03-15 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00220736/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G22225A A23403G C26801G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535806
 2020-03-15 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00220933/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T C14408T A23403G CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_535807
 2020-03-15 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00221340/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535810
 2020-03-15 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00221627/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T12190C C14408T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535811
 2020-03-15 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00221852/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C8208T G9267A T9667C C14408T A23403G G25947T G28361A GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_535817
 2020-03-15 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00222575/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C23191T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538035
 2020-03-15 2020-09-16
 Spain hCoV-19/Spain/VC-CSIC-98003099/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C14408T A20268G A23403G G29734C AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_538036
 2020-03-15 2020-09-16
 Spain hCoV-19/Spain/VC-CSIC-98003100/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATC1- C241T C3037T C14408T A20268G G20937T G20991T A23403G GTACGATC29747- TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_538039
 2020-03-15 2020-09-16
 Spain hCoV-19/Spain/VC-CSIC-98003103/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C2232T C2508T G11083T T15888C G26144T C28511A AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_538041
 2020-03-15 2020-09-16
 Spain hCoV-19/Spain/VC-CSIC-98003105/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C3037T C14408T G15438T A20268G A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_538043
 2020-03-15 2020-09-16
 Spain hCoV-19/Spain/VC-CSIC-98003107/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C14408T G21786A A23403G G29009A AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_538044
 2020-03-15 2020-09-16
 Spain hCoV-19/Spain/VC-CSIC-98003108/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C14408T G15438T A20268G A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_538045
 2020-03-15 2020-09-16
 Spain hCoV-19/Spain/VC-CSIC-98003109/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C14408T C15346A A20268G A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_539524
 2020-03-15 2020-09-18
 Spain hCoV-19/Spain/CL-ISCIII-202468/2020
 C241T C3037T C6696T C14408T A20268G A23403G

EPI_ISL_547463
 2020-03-15 2020-09-24
 Netherlands hCoV-19/Netherlands/GE-RIVM-10111/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T G28195T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_548984
 2020-03-15 2020-09-28
 Singapore hCoV-19/Singapore/976/2020
 ATTAAAGG1- AAAAAAAAAAAA29892-

EPI_ISL_548989
 2020-03-15 2020-09-28
 Singapore hCoV-19/Singapore/981/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C1059T C3037T G11083T C14408T G17259T A23403G G25563T A27736G AAAAAAAAAAAA29892-

EPI_ISL_548998
 2020-03-15 2020-09-28
 Singapore hCoV-19/Singapore/990/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- T4579A A18333T C19011T AAAAAAAAAAAA29892-

EPI_ISL_549005
 2020-03-15 2020-09-28
 Singapore hCoV-19/Singapore/997/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGT1- C241T C1059T C3037T A8808R T8869Y C14408T C14670Y A19585R A23403G G25563T AAAAAAAAAAAA29892-

EPI_ISL_561363
 2020-03-15 2020-09-30
 United Kingdom hCoV-19/England/GSTT-4721/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1973T A2480G C2558T A8537G G11083T C14805T C25339T G26144T T26732G ACGT27611- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_565961
 2020-03-15 2020-09-30
 United States hCoV-19/USA/MI-MDHHS-SC21900/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_566024
 2020-03-15 2020-09-30
 United States hCoV-19/USA/MI-MDHHS-SC21973/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T A5011M C14408T A23403G G25563T TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_568956
 2020-03-15 2020-10-02
 France hCoV-19/France/IHU-0756/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T G8371T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

GWHAORC01000001
 2020-03-15 2020-09-11
 China SARS-CoV-2/human/CHN/Beijing-P1.2/2020
 C241T G3231T C14408T T16254C T16545C A23403G A26449T

GWHAORN01000001
 2020-03-15 2020-09-11
 China SARS-CoV-2/human/CHN/Beijing-CP1/2020
 C241T C2416T C3037T C14322T C14408T A23403G G25563T T26038C

MT466583
 2020-03-15 2020-05-13
 United States SARS-CoV-2/human/USA/AK002/2020
 ATTAAAGGTTTATACC1- C241T C3037T C6504T C14408T A23403G GAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29864-

MT477835
 2020-03-15 2020-05-14
 United States SARS-CoV-2/human/USA/AK003/2020
 ATTAAAGGTTTAT1- C241T C3037T C6504T C14408T A23403G GAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29864-

MT509465
 2020-03-15 2020-05-22
 United States SARS-CoV-2/human/USA/MD-HP00010/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT510718
 2020-03-15 2020-05-25
 United States SARS-CoV-2/human/USA/hCoV-19-USA-CA-UCSF-UC40/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC G29747A TGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29840-

MT670014
 2020-03-15 2020-06-25
 Chile SARS-CoV-2/human/CHL/2020-25338/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT670019
 2020-03-15 2020-06-25
 Chile SARS-CoV-2/human/CHL/2020-27991/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT671817
 2020-03-15 2020-06-26
 United States SARS-CoV-2/human/USA/CA-CZB-1763/2020
 AT1-

MT706132
 2020-03-15 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-04/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C1059T C3037T C14408T G15760A A23403G G25563T GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

MT706133
 2020-03-15 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-11/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706135
 2020-03-15 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-13/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C12809T C14408T A22524T A23403G T25476C G25563T C26625T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706145
 2020-03-15 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-24/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706285
 2020-03-15 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-157/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706286
 2020-03-15 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-158/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C14408T T15366C A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706287
 2020-03-15 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-159/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T A6584G G11161A C14408T T15366C A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706288
 2020-03-15 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-160/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C14408T T15366C A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT772085
 2020-03-15 2020-07-16
 United States SARS-CoV-2/human/USA/WI-UW-02/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C17639T A20268G A23403G C28638T C29640T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT772087
 2020-03-15 2020-07-16
 United States SARS-CoV-2/human/USA/WI-UW-05/2020
 ATTAAAGGTTTATACCTTCC1- C241T C1059T C3037T C14408T G15760A A23403G G25563T G29868T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

MT810483
 2020-03-15 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1384-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C884T G1397A A5742T G8653T A10512G G11083T A12130G C16111T G22745A T28688C CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810932
 2020-03-15 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0199-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C884T G1397A A5742T G8653T A10512G G11083T A12130G C16111T G22745A T28688C CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811169
 2020-03-15 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0104-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T A23403G G25563T C29253T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT907519
 2020-03-15 2020-08-20
 Venezuela SARS-CoV-2/human/VEN/17M/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGA1- C241T G564T C3037T T10162C C14408T A20268G A23403G G29210T G29734C GAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29864-

MW008565
 2020-03-15 2020-09-15
 United States SARS-CoV-2/human/USA/GA-EHC-034H/2020
 ATTAAAGGTTTATACCTTCCC1- C241T C1059T G2914A C3037T C14408T C16260T T18231C A23403G G25563T C28821A AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

MW008566
 2020-03-15 2020-09-15
 United States SARS-CoV-2/human/USA/GA-EHC-036J/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C3037T C14408T C22986T A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

MW008574
 2020-03-15 2020-09-15
 United States SARS-CoV-2/human/USA/GA-EHC-044R/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- T490A C3177T A4911T C6040T C8782T G12478A T18736C C24034T T26729C G28077C T28144C C28896G A29700G AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

MW008578
 2020-03-15 2020-09-15
 United States SARS-CoV-2/human/USA/GA-EHC-055C/2020
 ATTAAA1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

NMDC60013237
 2020-03-15 2020-06-01
 China hCoV-19/Guangzhou/ID074/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T A1547G C3037T C6840T C14408T G21920A A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416481
 2020-03-16 2020-03-22
 Georgia hCoV-19/Georgia/Tb-712/2020
 ATT1- C241T C3037T C14408T A20268G A23403G CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_416830
 2020-03-16 2020-03-23
 United States hCoV-19/USA/NY-NYUMC2/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_416831
 2020-03-16 2020-03-23
 United States hCoV-19/USA/NY-NYUMC3/2020
 C241T C3037T C14408T C18877T A23403G G25563T

EPI_ISL_416832
 2020-03-16 2020-03-23
 United States hCoV-19/USA/NY-NYUMC4/2020
 C241T C3037T C14408T A23403G

EPI_ISL_417034
 2020-03-16 2020-03-24
 Brazil hCoV-19/Brazil/AMBR-02/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGA1- C8782T T9477A C12781T C14805T G25979T C26642T T28144C C28657T C28863T CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

EPI_ISL_417409
 2020-03-16 2020-03-25
 Australia hCoV-19/Australia/NSW57/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- A2480G C2558T C2644T G11083T C14805T G26144T C28887T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_417410
 2020-03-16 2020-03-25
 Australia hCoV-19/Australia/NSW58/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- A2480G C2558T G11083T C14805T G26144T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_417468 MT582477
 2020-03-16 2020-03-26
 Germany SARS-CoV-2/human/DEU/NRW-23/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_417504
 2020-03-16 2020-03-26
 United States hCoV-19/USA/WI-UW-15/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C7945T C8782T C17747T A17858G C18060T A24694T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417506
 2020-03-16 2020-03-27
 United States hCoV-19/USA/WI-UW-12/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417508
 2020-03-16 2020-03-27
 United States hCoV-19/USA/WI-UW-21/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G G25563T G28871A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417510
 2020-03-16 2020-03-27
 United States hCoV-19/USA/WI-UW-19/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417513
 2020-03-16 2020-03-27
 United States hCoV-19/USA/WI-UW-14/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G G25563T G28871A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417536
 2020-03-16 2020-03-27
 Iceland hCoV-19/Iceland/10/2020
 C241T C3037T A10323G C14408T A20268G A23403G

EPI_ISL_417550
 2020-03-16 2020-03-27
 Iceland hCoV-19/Iceland/184/2020
 C241T C3037T C14408T A23403G A26530G

EPI_ISL_417551
 2020-03-16 2020-03-27
 Iceland hCoV-19/Iceland/187/2020
 C241T C3037T A11839G C14408T T19839C A23403G GGG28881AAC

EPI_ISL_417553
 2020-03-16 2020-03-27
 Iceland hCoV-19/Iceland/220/2020
 C1218T G27806T G29711T

EPI_ISL_417563
 2020-03-16 2020-03-27
 Iceland hCoV-19/Iceland/235/2020
 C19T C241T C3037T C4276T C13377A C14408T A23403G A26530G

EPI_ISL_417573
 2020-03-16 2020-03-27
 Iceland hCoV-19/Iceland/245/2020
 C241T C3037T A10323G C14408T A20268G A23403G

EPI_ISL_417618
 2020-03-16 2020-03-27
 Iceland hCoV-19/Iceland/29/2020
 C8782T T9445C C17747T A17858G C18060T A24694T T28144C G29140T T29361C

EPI_ISL_417672
 2020-03-16 2020-03-27
 Iceland hCoV-19/Iceland/38/2020
 C2668T C14805T T17247C G26144T

EPI_ISL_417676
 2020-03-16 2020-03-27
 Iceland hCoV-19/Iceland/98/2020
 C241T C3037T A10323G C14408T A20268G A23403G

EPI_ISL_417678
 2020-03-16 2020-03-27
 Iceland hCoV-19/Iceland/185/2020
 C241T C3037T A10323G C14408T A20268G A23403G

EPI_ISL_417685
 2020-03-16 2020-03-27
 Iceland hCoV-19/Iceland/215/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_417699
 2020-03-16 2020-03-27
 Iceland hCoV-19/Iceland/206/2020
 A1321C G11083T C14805T T17247C G26144T

EPI_ISL_417703
 2020-03-16 2020-03-27
 Iceland hCoV-19/Iceland/179/2020
 C241T C3037T A10323G C14408T A20268G A23403G

EPI_ISL_417706
 2020-03-16 2020-03-27
 Iceland hCoV-19/Iceland/199/2020
 C241T T658C C3037T C14408T A23403G C24378T A24862G C27476T C28629T C29541T

EPI_ISL_417709
 2020-03-16 2020-03-27
 Iceland hCoV-19/Iceland/189/2020
 C241T C3037T A10323G C14408T T18603C A20268G A23403G T24063C

EPI_ISL_417716
 2020-03-16 2020-03-27
 Iceland hCoV-19/Iceland/174/2020
 C5142T G11083T C14805T T17247C G26144T

EPI_ISL_417717
 2020-03-16 2020-03-27
 Iceland hCoV-19/Iceland/195/2020
 C8782T T9445C T17531C C17747T A17858G C18060T G18756T A24694T T28144C

EPI_ISL_417724
 2020-03-16 2020-03-27
 Iceland hCoV-19/Iceland/182/2020
 C8782T T9445C T17531C C17747T A17858G C18060T G18756T A24694T T28144C

EPI_ISL_417733
 2020-03-16 2020-03-27
 Iceland hCoV-19/Iceland/207/2020
 C241T C3037T C14408T A23403G GGG28881AAC -29686C

EPI_ISL_417742
 2020-03-16 2020-03-27
 Iceland hCoV-19/Iceland/197/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_417743
 2020-03-16 2020-03-27
 Iceland hCoV-19/Iceland/200/2020
 C241T T658C C3037T C14408T C20031T A23403G A24862G C28629T

EPI_ISL_417746
 2020-03-16 2020-03-27
 Iceland hCoV-19/Iceland/183/2020
 C241T C3037T C14408T A23403G A26530G

EPI_ISL_417750
 2020-03-16 2020-03-27
 Iceland hCoV-19/Iceland/202/2020
 C5142T G11083T C14805T T17247C T25070C G26144T

EPI_ISL_417752
 2020-03-16 2020-03-27
 Iceland hCoV-19/Iceland/213/2020
 C241T C1059T C3037T T13006C C14408T A23403G C23929T G25563T C25688T G27430A

EPI_ISL_417753
 2020-03-16 2020-03-27
 Iceland hCoV-19/Iceland/180/2020
 C241T C3037T A10323G C14408T A20268G A23403G

EPI_ISL_417754
 2020-03-16 2020-03-27
 Iceland hCoV-19/Iceland/226/2020
 C241T C3037T C14408T A23403G C25350T C25539T

EPI_ISL_417762
 2020-03-16 2020-03-27
 Iceland hCoV-19/Iceland/191/2020
 A4123G C8782T T9445C T17531C C17747T A17858G C18060T G18756T A24694T GTTCTA28090- T28144C

EPI_ISL_417763
 2020-03-16 2020-03-27
 Iceland hCoV-19/Iceland/211/2020
 C241T C3037T A3830G C14408T A23403G A26530G

EPI_ISL_417766
 2020-03-16 2020-03-27
 Iceland hCoV-19/Iceland/208/2020
 C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_417774
 2020-03-16 2020-03-27
 Iceland hCoV-19/Iceland/175/2020
 C241T C3037T A10323G C14408T A20268G A23403G

EPI_ISL_417814
 2020-03-16 2020-03-27
 Iceland hCoV-19/Iceland/181/2020
 A161T C241T G2780T C3037T C14408T A20268G A23403G

EPI_ISL_417815
 2020-03-16 2020-03-27
 Iceland hCoV-19/Iceland/186/2020
 C241T C3037T C14408T C23086T A23403G C27046T GGG28881AAC

EPI_ISL_417818
 2020-03-16 2020-03-27
 Iceland hCoV-19/Iceland/190/2020
 C8782T T9445C T17531C C17747T A17858G C18060T G18756T A24694T T28144C

EPI_ISL_417820
 2020-03-16 2020-03-27
 Iceland hCoV-19/Iceland/193/2020
 A161T C241T G2780T C3037T C14408T A20268G A23403G

EPI_ISL_417822
 2020-03-16 2020-03-27
 Iceland hCoV-19/Iceland/196/2020
 A1321C G11083T C14805T T17247C G26144T

EPI_ISL_417823
 2020-03-16 2020-03-27
 Iceland hCoV-19/Iceland/198/2020
 C241T T658C C3037T C14408T A23403G A24862G C27476T C28629T C29541T

EPI_ISL_417824
 2020-03-16 2020-03-27
 Iceland hCoV-19/Iceland/201/2020
 C241T C3037T A10323G C14408T A20268G A23403G

EPI_ISL_417825
 2020-03-16 2020-03-27
 Iceland hCoV-19/Iceland/203/2020
 G11083T C14805T C15237T T17247C G26144T

EPI_ISL_417826
 2020-03-16 2020-03-27
 Iceland hCoV-19/Iceland/204/2020
 C241T C3037T C14408T G16864A A23403G GGG28881AAC

EPI_ISL_417827
 2020-03-16 2020-03-27
 Iceland hCoV-19/Iceland/205/2020
 C241T C3037T A10323G C14408T A20268G A23403G

EPI_ISL_417829
 2020-03-16 2020-03-27
 Iceland hCoV-19/Iceland/210/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_417830
 2020-03-16 2020-03-27
 Iceland hCoV-19/Iceland/212/2020
 C241T C541T C1059T C3037T G11083T C14408T A23403G G25563T

EPI_ISL_417831
 2020-03-16 2020-03-27
 Iceland hCoV-19/Iceland/214/2020
 C241T C3037T C14408T A23403G

EPI_ISL_417832
 2020-03-16 2020-03-27
 Iceland hCoV-19/Iceland/216/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_417833
 2020-03-16 2020-03-27
 Iceland hCoV-19/Iceland/217/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_417834
 2020-03-16 2020-03-27
 Iceland hCoV-19/Iceland/218/2020
 C241T C3037T C14408T C16949T G18756A C19391T A23403G C27046T C28344A GGG28881AAC

EPI_ISL_417835
 2020-03-16 2020-03-27
 Iceland hCoV-19/Iceland/219/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_417836
 2020-03-16 2020-03-27
 Iceland hCoV-19/Iceland/221/2020
 C241T C3037T A10323G C14408T A20268G A23403G

EPI_ISL_417837
 2020-03-16 2020-03-27
 Iceland hCoV-19/Iceland/222/2020
 C241T T658C C3037T C14408T A23403G A24862G C28629T

EPI_ISL_417838
 2020-03-16 2020-03-27
 Iceland hCoV-19/Iceland/223/2020
 C5142T G11083T C14805T T17247C G26144T

EPI_ISL_417839
 2020-03-16 2020-03-27
 Iceland hCoV-19/Iceland/224/2020
 C241T C2455T C3037T C10450T C14408T A23403G

EPI_ISL_418017
 2020-03-16 2020-03-28
 Portugal hCoV-19/Portugal/PT0032/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T G11527T C14408T A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_418018
 2020-03-16 2020-03-28
 Portugal hCoV-19/Portugal/PT0033/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_418020
 2020-03-16 2020-03-28
 Portugal hCoV-19/Portugal/PT0035/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- A2480G C2558T G11083T C14805T G24095T G26144T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_418021
 2020-03-16 2020-03-28
 Portugal hCoV-19/Portugal/PT0036/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- A2480G C2558T T10825A G11083T C14805T G24095T G26144T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_418029 MT259236
 2020-03-16 2020-03-28
 United States SARS-CoV-2/human/USA/WA-UW244/2020
 ATTAAAGGTTTATACCTTCCCAGG1- AACC34TTTA C8782T C17747T A17858G C18060T T23010C T28144C -29904GANA

EPI_ISL_418030 MT259237
 2020-03-16 2020-03-28
 United States SARS-CoV-2/human/USA/WA-UW245/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- AACC34HTTH C8782T C17747T A17858G C18060T T28144C G28280T T29515A AAAAAAA29897-

EPI_ISL_418032 MT259239
 2020-03-16 2020-03-28
 United States SARS-CoV-2/human/USA/WA-UW247/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAG1- C1059T C3037T C14408T A23403G G25563T G29553A AAAAA29899-

EPI_ISL_418033 MT259240
 2020-03-16 2020-03-28
 United States SARS-CoV-2/human/USA/WA-UW248/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAA1- C1059T C3037T C14408T A23403G G25563T G29553A AA29902-

EPI_ISL_418034 MT259241
 2020-03-16 2020-03-28
 United States SARS-CoV-2/human/USA/WA-UW249/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTAT1- C8782T C17747T A17858G C18060T T28144C

EPI_ISL_418037 MT259244
 2020-03-16 2020-03-28
 United States SARS-CoV-2/human/USA/WA-UW252/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- ACC35TTH C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T AAAA29900-

EPI_ISL_418040 MT259247
 2020-03-16 2020-03-28
 United States SARS-CoV-2/human/USA/WA-UW255/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGA1- C8782T C17747T A17858G C18060T T19632A A23989G T28144C GA29868VT

EPI_ISL_418046 MT259253
 2020-03-16 2020-03-28
 United States SARS-CoV-2/human/USA/WA-UW261/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTG1- G3955T A8681G C8782T C17747T A17858G C18060T G22604A T28144C

EPI_ISL_418047 MT259254
 2020-03-16 2020-03-28
 United States SARS-CoV-2/human/USA/WA-UW262/2020
 ATTAAAGGTTTATAC1- C8782T C17747T A17858G C18060T T28144C A29903-

EPI_ISL_418050 MT259257
 2020-03-16 2020-03-28
 United States SARS-CoV-2/human/USA/WA-UW265/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C8782T A14604G C17747T A17858G C18060T C21911T T28144C AAAA29900-

EPI_ISL_418053 MT259260
 2020-03-16 2020-03-28
 United States SARS-CoV-2/human/USA/WA-UW268/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TH C241T C1059T C3037T C14408T A23403G G25563T G29553A A29903-

EPI_ISL_418054 MT259261
 2020-03-16 2020-03-28
 United States SARS-CoV-2/human/USA/WA-UW269/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- AACC34HTTH C241T C1059T C3037T G12111A C14408T A23403G G25563T G29553A CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_418149
 2020-03-16 2020-03-28
 United Kingdom hCoV-19/Wales/PHWC-2415E/2020
 A1- G11083T C14805T T17247C G23856K C25493T G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_418156
 2020-03-16 2020-03-28
 United Kingdom hCoV-19/Wales/PHWC-2423D/2020
 ATT1- G1440A G2891A C25669T G28851T TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_418158
 2020-03-16 2020-03-28
 United Kingdom hCoV-19/Wales/PHWC-24279/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- G1440A G2891A C25669T G28851T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_418159
 2020-03-16 2020-03-28
 United Kingdom hCoV-19/Wales/PHWC-24288/2020
 A1- G1440A G2891A G28851T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_418163
 2020-03-16 2020-03-28
 United Kingdom hCoV-19/Wales/PHWC-242C4/2020
 ATTAAAGG1- G1440A G2891A G28851T

EPI_ISL_418192
 2020-03-16 2020-03-28
 United States hCoV-19/USA/NY-NYUMC7/2020
 C241T C1059T A2018G C3037T C14408T T21995C A23403G G25563T

EPI_ISL_418235
 2020-03-16 2020-03-29
 France hCoV-19/France/IDF2561/2020
 C241T C3037T C14408T C16887T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_418236
 2020-03-16 2020-03-29
 France hCoV-19/France/HF2586/2020
 C241T C1059T C3037T C4113T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418237
 2020-03-16 2020-03-29
 France hCoV-19/France/HF2595/2020
 C241T C1059T C2003T C2469T C3037T C10582T C12116T C14408T A23403G G25563T C27059T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_418238
 2020-03-16 2020-03-29
 France hCoV-19/France/HF2597/2020
 C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418240
 2020-03-16 2020-03-29
 France hCoV-19/France/IDF2684/2020
 C241T C3037T C14408T C15324T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_418416
 2020-03-16 2020-03-16
 France hCoV-19/France/ARA09588/2020
 C241T C2416T C3037T G8371T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_418417
 2020-03-16 2020-03-16
 France hCoV-19/France/ARA09686/2020
 C241T C3037T C9541T C14408T C15324T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_418418
 2020-03-16 2020-03-16
 France hCoV-19/France/ARA10163/2020
 C241T C3037T C14408T C15324T A23403G C25433T C29546T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_418419
 2020-03-16 2020-03-16
 France hCoV-19/France/ARA10165/2020
 C241T C3037T C14408T C15324T A23403G C25433T C29546T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_418625
 2020-03-16 2020-03-30
 Belgium hCoV-19/Belgium/ULG-6688/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A C25728T A28225G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_418627
 2020-03-16 2020-03-30
 Belgium hCoV-19/Belgium/ULG-6743/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_418639
 2020-03-16 2020-03-30
 Belgium hCoV-19/Belgium/ULG-8617/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2113T C3037T C7765T C14408T C17690T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_418673
 2020-03-16 2020-03-30
 United Kingdom hCoV-19/England/20122032802/2020
 C241T C3037T C14408T A23403G C25350Y

EPI_ISL_418675
 2020-03-16 2020-03-30
 United Kingdom hCoV-19/England/20122073102/2020
 ATG1605-

EPI_ISL_418678
 2020-03-16 2020-03-30
 United Kingdom hCoV-19/England/20122088102/2020
 A2480G C2558T C7011T G11083T C14805T C23533T G26144T

EPI_ISL_418702
 2020-03-16 2020-03-30
 United Kingdom hCoV-19/England/20124020802/2020
 C241T C3037T C14408T A23403G C25350T

EPI_ISL_418711
 2020-03-16 2020-03-30
 United Kingdom hCoV-19/England/20124034702/2020
 A2480G C2558T G3539T G11083T C14805T C21638Y G26144T

EPI_ISL_418723
 2020-03-16 2020-03-30
 United Kingdom hCoV-19/England/20124049402/2020
 C241T C3037T C7083T C14408T C19170T G19509A A23403G GGG28881AAC

EPI_ISL_418869 MT263384
 2020-03-16 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW301/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCG1- T490A C3177T C8782T C9113T T18736C C21648T C24034T T26729C C27635T G28077C T28144C A29567C A29700G AAAAAAAAA29895-

EPI_ISL_418873 MT263388
 2020-03-16 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW305/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACG1- C8782T A10323G T15927G C17747T A17858G C18060T C26936T T28144C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_418875 MT263390
 2020-03-16 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW307/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACT1- T150Y C241T C1059T C3037T C14408T A23403G G25563T G29553A -29904ANADA

EPI_ISL_418876 MT263391
 2020-03-16 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW308/2020
 ATTA1- T77W A79G C241T C1059T C3037T C14408T A23403G G25563T G29553A -29904AAAAAANANANA

EPI_ISL_418889 MT263402
 2020-03-16 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW322/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C241T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_418890 MT263403
 2020-03-16 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW323/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C8782T C16329T C17747T A17858G C18060T T23010C T28144C -29904ANANA

EPI_ISL_418892 MT263405
 2020-03-16 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW325/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAG1- C8078T C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAA29891-

EPI_ISL_418897 MT263410
 2020-03-16 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW330/2020
 ATTAAAG1- G8C TACCTTCCCAGGTAACAAACCAACC13- T490A C3177T C6040T C8782T G12478A T18736C C21910T C24034T T26729C G28077C T28144C C28896G A29700G AA29902CC

EPI_ISL_418899 MT263412
 2020-03-16 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW332/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGA1- C2232T C8782T C17747T A17858G C18060T T23010C T28144C A29903-

EPI_ISL_418900 MT263413
 2020-03-16 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW333/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAA29894-

EPI_ISL_418903 MT263416
 2020-03-16 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW336/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C8782T G11083T C17747T A17858G C18060T G21850T T28144C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_418904 MT263417
 2020-03-16 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW337/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T C27804T G29553A AAAAAAA29897-

EPI_ISL_418905 MT263418
 2020-03-16 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW338/2020
 ATTAAAGGTTTATACCTTCCCAG1- ACC35TTH C8782T C17747T A17858G C18060T T23010C T28144C AAAA29900-

EPI_ISL_418906 MT263419
 2020-03-16 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW339/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- G8602A C8782T C17747T A17858G C18060T T28144C C29870H A29903-

EPI_ISL_418907 MT263420
 2020-03-16 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW340/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C8782T C17747T A17858G C18060T G25064C T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_418908 MT263421
 2020-03-16 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW341/2020
 TAA3- AACC34HTTH C1238T C3593T C4683T C8782T C17747T A17858G C18060T A27200G T28144C T28924C

EPI_ISL_418909 MT263422
 2020-03-16 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW342/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAA1- C5000T C8782T T15927G C17747T A17858G C18060T C26936T T28144C C29085T -29904ANANAAA

EPI_ISL_418910 MT263423
 2020-03-16 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW343/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAA1- C8782T C17747T A17858G C18060T T28144C G29868V C29870H

EPI_ISL_418911 MT263424
 2020-03-16 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW344/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- AAGTCATTT686- C6310T C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAA29887-

EPI_ISL_418912 MT263425
 2020-03-16 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW345/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C8782T C17747T A17858G C18060T T28144C TG29867AA C29870A

EPI_ISL_418921 MT263434
 2020-03-16 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW354/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAA1- C1912T C8782T C17747T A17858G C18060T T28144C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_418922 MT263435
 2020-03-16 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW355/2020
 ATTAAAGGTTTATACCTT1- AACC34TTTA A6693G C8782T C14877T C17747T A17858G C18060T T28144C A29188T AAA29901-

EPI_ISL_418923 MT263436
 2020-03-16 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW356/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_418927 MT263440
 2020-03-16 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW360/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCT1- T2041C C8782T C17747T A17858G C18060T T28144C -29904AAAAAAAAAAA

EPI_ISL_418932 MT263445
 2020-03-16 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW365/2020
 AT1- C37H C241T C1059T C3037T C14408T G16912T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_418935 MT263448
 2020-03-16 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW368/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAA1- C8782T C16887T C17747T A17858G C18060T G25850A A27525G T28144C A29903-

EPI_ISL_418938 MT263451
 2020-03-16 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW371/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACT1- C1238T C8782T C17747T A17858G C18060T G25494T T28144C T28924C TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_418948 MT263462
 2020-03-16 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW383/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAA1- C8782T C8937T C17747T A17858G C18060T T28144C ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_418949 MT263463
 2020-03-16 2020-03-30
 United States SARS-CoV-2/human/USA/CT-UW329/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C8782T C11704T C17747T A17858G C18060T T20256C T28144C TG29867AA C29870A

EPI_ISL_418950 MT263464
 2020-03-16 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW384/2020
 ATTAAAG1- G8C TACCTTCCCAGGTAACAAACCAACC13- G8602A C8782T C17747T A17858G C18060T T28144C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_418951 MT263465
 2020-03-16 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW385/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- CC36TA C241T C1059T C3037T C14408T A23403G G25563T G29553A AA29902-

EPI_ISL_418953 MT263467
 2020-03-16 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW387/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- TGT52GTC C241T C1059T C3037T C14408T G16912T A23403G G25563T G29553A

EPI_ISL_419256 MT322398
 2020-03-16 2020-04-08
 United States SARS-CoV-2/human/USA/VA-DCLS-0005/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C2416T C3037T G4523A C10712T C14408T A23403G G25563T G29868A C29870A

EPI_ISL_419407
 2020-03-16 2020-04-02
 United Kingdom hCoV-19/Wales/PHWC-243EF/2020
 A1- T10W G1440A G2891A C25669Y G28851T

EPI_ISL_419550 MT582467
 2020-03-16 2020-04-02
 Germany SARS-CoV-2/human/DEU/NRW-33/2020
 C241T T658C C3037T C4886T C14408T A23403G A24862G C28629T

EPI_ISL_419551 MT582466
 2020-03-16 2020-04-02
 Germany SARS-CoV-2/human/DEU/NRW-34/2020
 C241T T658C C3037T C14408T A23403G A24862G C28629T

EPI_ISL_419552 MT582465
 2020-03-16 2020-04-02
 Germany SARS-CoV-2/human/DEU/NRW-35/2020
 G1820A A2480G C2558T T3283A T8599C C14805T G26144T

EPI_ISL_419588
 2020-03-16 2020-04-02
 Luxembourg hCoV-19/Luxembourg/LNS4836560/2020
 A187G C241T C3037T C14408T A23403G GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_419593
 2020-03-16 2020-04-02
 Luxembourg hCoV-19/Luxembourg/LNS6603085/2020
 C241T A618G C3037T C14408T C15324T A23403G AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_419594
 2020-03-16 2020-04-02
 Luxembourg hCoV-19/Luxembourg/LNS7537751/2020
 C241T C1059T C3037T C4320T C14408T A23403G G25563T C25688T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_419669
 2020-03-16 2020-04-03
 Austria hCoV-19/Austria/CeMM0016/2020
 C241T A1140C C3037T C14408T A19652G A20268G A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_419670
 2020-03-16 2020-04-03
 Austria hCoV-19/Austria/CeMM0017/2020
 C241T C1059T C3037T C14408T A23403G G25563T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_419805 MT451004
 2020-03-16 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC94/2020
 ATTAAAG1- G8A C8782T C17747T A17858G C18060T A24694T T28144C

EPI_ISL_419807 MT451006
 2020-03-16 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC96/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- ATG1605- C4683T

EPI_ISL_419808 MT451007
 2020-03-16 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC97/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C1076T G1397A G11083T T28688C G29742T

EPI_ISL_419810 MT451008
 2020-03-16 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC98/2020
 ATTAAAG1- C241T C3037T G11083K C14408T A23403G A26530G

EPI_ISL_419811 MT451009
 2020-03-16 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC99/2020
 ATTA1- C241T C2416T C3037T G9092A C14408T C14786T G20578T A23403G G25563T T25956C

EPI_ISL_419812 MT451010
 2020-03-16 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC100/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- T490A C3177T C8782T T18736C G19684T C24034T T26729C C27635T G28077C T28144C A29700G C29857Y

EPI_ISL_419837 MT451044
 2020-03-16 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC140/2020
 ATT1- C3634T C8782T C17747T A17858G C18060T T28144C AC29761-

EPI_ISL_419838 MT451045
 2020-03-16 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC141/2020
 A1- C241T C3037T C14408T A23403G

EPI_ISL_419839 MT451046
 2020-03-16 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC142/2020
 A1- C241T C1059T C3037T G12052T C14408T A23403G G25563T

EPI_ISL_419840 MT451047
 2020-03-16 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC143/2020
 ATTA1- C241T C313T C3037T C14408T C21139T A23403G GGG28881AAC

EPI_ISL_420018 MT322413
 2020-03-16 2020-04-08
 United States SARS-CoV-2/human/USA/VA-DCLS-0031/2020
 ATTAAA1- C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_420305
 2020-03-16 2020-04-06
 United States hCoV-19/USA/AK-PHL006/2020
 ATTAAAGGTTTATACCTTCCC1- C241T C3037T C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420306
 2020-03-16 2020-04-06
 United States hCoV-19/USA/AK-PHL015/2020
 ATTAAAGGTTTA1- T2266C C6027T C7979M A10236G G11083T C14805T T17247C G26144T AAAAAAAAAAAAAA29890-

EPI_ISL_421369 MT370846
 2020-03-16 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08401/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C3037T T14104C C14408T C18877T A23403G G25563T GCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29783-

EPI_ISL_421370 MT370891
 2020-03-16 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08402/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G G25563T AATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29849-

EPI_ISL_421375 MT370862
 2020-03-16 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08412/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T A6324G T11191A C11916T C14408T C18998T A23403G G25563T G29540A AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_421378 MT370895
 2020-03-16 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08415/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C1917T C3037T C14408T G20005A A23403G G25563T TGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29807-

EPI_ISL_421550
 2020-03-16 2020-04-08
 United States hCoV-19/USA/WY-WYPHL014/2020
 C241T C3037T G11083T C14408T A23403G G26727T

EPI_ISL_421684
 2020-03-16 2020-04-09
 United States hCoV-19/USA/MN128-MDH128/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421685
 2020-03-16 2020-04-09
 United States hCoV-19/USA/MN129-MDH129/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421687
 2020-03-16 2020-04-09
 United States hCoV-19/USA/MN131-MDH131/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17747T A17858G C18060T C21727T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421688
 2020-03-16 2020-04-09
 United States hCoV-19/USA/MN132-MDH132/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C11916T C14408T A18233T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421689
 2020-03-16 2020-04-09
 United States hCoV-19/USA/MN133-MDH133/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421690
 2020-03-16 2020-04-09
 United States hCoV-19/USA/MN134-MDH134/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G3617R C8782T C17747T A17858G C18060T C20016T C21614T A24694T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421691
 2020-03-16 2020-04-09
 United States hCoV-19/USA/MN135-MDH135/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_422413
 2020-03-16 2020-04-10
 Taiwan hCoV-19/Taiwan/NTU11/2020
 C228T G1397A G9479T A9514G G11083T A19818G G26720C G28202T T28688C T28835C G29742T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_422414
 2020-03-16 2020-04-10
 Taiwan hCoV-19/Taiwan/NTU12/2020
 C241T C3037T G11464T C14408T C15324T T18495C C21575T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_422427
 2020-03-16 2020-04-10
 Kuwait hCoV-19/Kuwait/KU008/2020
 ATTA1- C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_422664 LR878202
 2020-03-16 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_117/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G21778A G22344T A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422666 LR878207
 2020-03-16 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_119/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A11438G C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422667 LR878189
 2020-03-16 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_120/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1820A A2480G C2558T T8599C G11083T C11102T C14805T G26144T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422703 LR877781
 2020-03-16 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_168/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1457T C1594T C3037T C11109T C14408T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422704 LR877772
 2020-03-16 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_169/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G21778A G22344T A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422705 LR877780
 2020-03-16 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_170/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G21778A G22344T A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422847 LR878178
 2020-03-16 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_87/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G7798T C14408T A23403G C25688T C28737T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422848 LR878187
 2020-03-16 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_88/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- C16762T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422849 LR878177
 2020-03-16 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_89/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T11638C C14408T G21268A C23277T A23403G GGG28881AAC C29708T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422850 LR878182
 2020-03-16 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_90/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422851 LR878169
 2020-03-16 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_91/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G20275A A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422852 LR878186
 2020-03-16 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_92/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A11438G C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422963 MT293158
 2020-03-16 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW393/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCG1- C8782T C17747T A17858G C18060T G21255C C26013T T28144C ATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29850-

EPI_ISL_422963 MT293158
 2020-03-16 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW393/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCG1- C8782T C17747T A17858G C18060T G21255C C26013T T28144C ATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29850-

EPI_ISL_422964 MT293159
 2020-03-16 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW394/2020
 ATTAAAGGTTT1- AACC34TTTA C8782T A12787G C17747T A17858G C18060T A24694T T28144C G28899C AA29902-

EPI_ISL_422964 MT293159
 2020-03-16 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW394/2020
 ATTAAAGGTTT1- AACC34TTTA C8782T A12787G C17747T A17858G C18060T A24694T T28144C G28899C AA29902-

EPI_ISL_422965 MT293160
 2020-03-16 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW395/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- AACC34CTTT C8782T C15738T C17747T A17858G C18060T C21642T A27525G T28144C G28655T AAAAAAAA29896-

EPI_ISL_422965 MT293160
 2020-03-16 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW395/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- AACC34CTTT C8782T C15738T C17747T A17858G C18060T C21642T A27525G T28144C G28655T AAAAAAAA29896-

EPI_ISL_422966 MT293161
 2020-03-16 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW396/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C3037T C6286T G11083T C14408T A23403G G25563T C28311T A29869T -29904AAANA

EPI_ISL_422966 MT293161
 2020-03-16 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW396/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C3037T C6286T G11083T C14408T A23403G G25563T C28311T A29869T -29904AAANAD

EPI_ISL_422967 MT293162
 2020-03-16 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW397/2020
 ATTAAAGGTTTATACCTTCCCAGG1- AACC34TTTA C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAA29885-

EPI_ISL_422967 MT293162
 2020-03-16 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW397/2020
 ATTAAAGGTTTATACCTTCCCAGG1- AACC34TTTA C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_422978
 2020-03-16 2020-04-12
 United States hCoV-19/USA/UN-UW-1291/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGT1- G91B C241T C1059T C3037T C14408T A23403G G25563T G29553A -29904AAA

EPI_ISL_422979
 2020-03-16 2020-04-12
 United States hCoV-19/USA/UN-UW-1292/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCA1- C241T C1059T C3037T C14408T A23403G G25563T G29553A -29904AD

EPI_ISL_422980
 2020-03-16 2020-04-12
 United States hCoV-19/USA/UN-UW-1307/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTG1- C241T C1059T C3037T C11916T C14408T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_422982 MT293177
 2020-03-16 2020-04-03
 United States SARS-CoV-2/human/USACT-UW412/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C2061T A8170G C8782T C17747T A17858G C18060T T23010C T28144C -29904AAANAAANA

EPI_ISL_422982 MT293177
 2020-03-16 2020-04-03
 United States SARS-CoV-2/human/USACT-UW412/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C2061T A8170G C8782T C17747T A17858G C18060T T23010C T28144C -29904AAANAAANA

EPI_ISL_424255 MT326091
 2020-03-16 2020-04-12
 United States SARS-CoV-2/human/USA/UNKNOWN-UW-1832/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTG1- A2952G AG2956TT A4236G G11083T C14805T T25655C G26144T A29903D

EPI_ISL_424668 MT339039
 2020-03-16 2020-04-13
 United States SARS-CoV-2/human/USA/AZ-ASU2922/2020
 C8782T C17747T A17858G C18060T A22005G T28144C

EPI_ISL_424972
 2020-03-16 2020-04-14
 Taiwan hCoV-19/Taiwan/CGMH-CGU-16/2020
 AT1- C241T C3037T C14408T C17004T C18877T G21204T A23403G G25563T G25767T

EPI_ISL_425121 MT582463
 2020-03-16 2020-04-14
 Germany SARS-CoV-2/human/DEU/NRW-37/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_425122 MT582462
 2020-03-16 2020-04-14
 Germany SARS-CoV-2/human/DEU/NRW-38/2020
 C241T C1059T C3037T C14408T G15380T A23403G G25563T

EPI_ISL_425187
 2020-03-16 2020-04-14
 Spain hCoV-19/Spain/Valencia63/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G C27981T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425188
 2020-03-16 2020-04-14
 Spain hCoV-19/Spain/Valencia64/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C29144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425189
 2020-03-16 2020-04-14
 Spain hCoV-19/Spain/Valencia65/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T17126C C17746T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425216
 2020-03-16 2020-04-14
 Spain hCoV-19/Spain/Valencia92/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C850T C6449T C8782T G13617T C26088T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425480
 2020-03-16 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10DFD8/2020
 T1516C ATG1605- T4949C C16887T

EPI_ISL_425481
 2020-03-16 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10DFE7/2020
 C2558T G11083T C14805T C19814T A25822G G26144T C29167T

EPI_ISL_425482
 2020-03-16 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10DFF6/2020
 ATG1605- C1912T A2501G G13960A A18153G

EPI_ISL_425483
 2020-03-16 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10E001/2020
 C241T C3037T C14408T A23403G G25429T C27972T C28045T

EPI_ISL_425675
 2020-03-16 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR132/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T C7926T G11083T C14805T G26144T C27600T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425677
 2020-03-16 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR134/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T T17247C G26144T C26447T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425682
 2020-03-16 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR139/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T C16470T C23707T G26144T C27012A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425684
 2020-03-16 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR140/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C22879A A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425685
 2020-03-16 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR141/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- T13345C C17999T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425693
 2020-03-16 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR150/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- T13345C C17999T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425736
 2020-03-16 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR206/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1587G G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_426297
 2020-03-16 2020-04-15
 United States hCoV-19/USA/NY-Wadsworth-27804-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T T21976C A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426323
 2020-03-16 2020-04-15
 United States hCoV-19/USA/NY-Wadsworth-16766-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T CAT29838ATC TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426529
 2020-03-16 2020-04-17
 United States hCoV-19/USA/AZ-TG269863/2020
 C241T C1059T C3037T C5183T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_427583
 2020-03-16 2020-04-19
 United States hCoV-19/USA/NY-WCMP11A03P/2020
 T490A C3177T C6040T C8782T G12478A T18736C C24034T T26729C G28077C T28144C C28896G A29700G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871RG

EPI_ISL_427584
 2020-03-16 2020-04-19
 United States hCoV-19/USA/NY-WCMP11A06P/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871RG

EPI_ISL_427585
 2020-03-16 2020-04-19
 United States hCoV-19/USA/NY-WCMP11B03P/2020
 ATTAAA1- C241T C1059T C3037T C11916T C14408T C18998T A20553G A23403G G25563T G29540A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871MG

EPI_ISL_427586
 2020-03-16 2020-04-19
 United States hCoV-19/USA/NY-WCMP11B04P/2020
 C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871RGG

EPI_ISL_427587
 2020-03-16 2020-04-19
 United States hCoV-19/USA/NY-WCMP11B07P/2020
 C241T C3037T C14408T A23403G G26951T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871RG

EPI_ISL_427588
 2020-03-16 2020-04-19
 United States hCoV-19/USA/NY-WCMP11C03P/2020
 A1- C241T C1059T C3037T C11916T C14408T C18998T A20553G A23403G G25563T G29540A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871RG

EPI_ISL_427589
 2020-03-16 2020-04-19
 United States hCoV-19/USA/NY-WCMP11C04P/2020
 AT1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871RR

EPI_ISL_427590
 2020-03-16 2020-04-19
 United States hCoV-19/USA/NY-WCMP11C05P/2020
 ATTAAAGGTTTATAC1- C241T C1059T C3037T C5817T C14408T G22289T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_427591
 2020-03-16 2020-04-19
 United States hCoV-19/USA/NY-WCMP11D01N/2020
 ATTA1- C241T C3037T C14408T A23403G G26951T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871D

EPI_ISL_427592
 2020-03-16 2020-04-19
 United States hCoV-19/USA/NY-WCMP11E04P/2020
 C241T AAGTCATTT686- C1059T C3037T C14408T A23403G G25563T A26433G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871RG

EPI_ISL_427593
 2020-03-16 2020-04-19
 United States hCoV-19/USA/NY-WCMP11E05P/2020
 ATTA1- C241T C3037T C14408T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871HG

EPI_ISL_427594
 2020-03-16 2020-04-19
 United States hCoV-19/USA/NY-WCMP11E09P/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871K

EPI_ISL_427595
 2020-03-16 2020-04-19
 United States hCoV-19/USA/NY-WCMP11F04P/2020
 C241T C1059T C1917T C3037T C14408T A23403G G24620T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871RG

EPI_ISL_427596
 2020-03-16 2020-04-19
 United States hCoV-19/USA/NY-WCMP11F06P/2020
 C241T C1059T C3037T C14408T A23403G G25563T G28085T G29736T AAA29871RGG AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_427597
 2020-03-16 2020-04-19
 United States hCoV-19/USA/NY-WCMP11F07P/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871RG

EPI_ISL_427598
 2020-03-16 2020-04-19
 United States hCoV-19/USA/NY-WCMP11H06P/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871W

EPI_ISL_427599
 2020-03-16 2020-04-19
 United States hCoV-19/USA/NY-WCMP12B04P/2020
 G11083T C14805T T17247C G26144T G27047R AAAA29871VGGG AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_427600
 2020-03-16 2020-04-19
 United States hCoV-19/USA/NY-WCMP12C01P/2020
 ATTA1- G11083T C14805T T17247C G26144T A29871W AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_427601
 2020-03-16 2020-04-19
 United States hCoV-19/USA/NY-WCMP12C04P/2020
 ATTAAAGGTT1- C241T C1059T C3037T A4336G C10851T C14408T G17193T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871MG

EPI_ISL_427602
 2020-03-16 2020-04-19
 United States hCoV-19/USA/NY-WCMP12C09P/2020
 ATTAAAGGTT1- C241T C1059T C3037T C11916T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871W

EPI_ISL_427603
 2020-03-16 2020-04-19
 United States hCoV-19/USA/NY-WCMP12D02P/2020
 ATTAAAGGTTTA1- C241T C1059T C3037T C14408T C14786T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871MG

EPI_ISL_427604
 2020-03-16 2020-04-19
 United States hCoV-19/USA/NY-WCMP12D08P/2020
 C241T C1059T C3037T A7824G C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871RGG

EPI_ISL_427605
 2020-03-16 2020-04-19
 United States hCoV-19/USA/NY-WCMP12D09P/2020
 C241T C1059T C3037T C14408T A23403G G25563T C26151T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871RG

EPI_ISL_427606
 2020-03-16 2020-04-19
 United States hCoV-19/USA/NY-WCMP12E01P/2020
 ATTAAAGGTT1- C241T C3037T C14408T A20268G A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871RG

EPI_ISL_427607
 2020-03-16 2020-04-19
 United States hCoV-19/USA/NY-WCMP12E06P/2020
 C241T AAGTCATTT686- C1059T C3037T C14408T A23403G G25563T A26433G C28399T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871RGG

EPI_ISL_427608
 2020-03-16 2020-04-19
 United States hCoV-19/USA/NY-WCMP12E09P/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871SG

EPI_ISL_427609
 2020-03-16 2020-04-19
 United States hCoV-19/USA/NY-WCMP12F01P/2020
 ATTAAA1- T4008C G11083T C14805T T17247C G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871RG

EPI_ISL_427610
 2020-03-16 2020-04-19
 United States hCoV-19/USA/NY-WCMP12F02P/2020
 ATTAAAGGTT1- C241T C1059T C3037T C11916T C14408T T18429Y C18998T A23403G G25563T G29540A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871RG

EPI_ISL_427611
 2020-03-16 2020-04-19
 United States hCoV-19/USA/NY-WCMP12F03P/2020
 ATTAAAGGTTTAT1- C241T C1059T C1917T C3037T C6128T C8964T C14262T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871T

EPI_ISL_427612
 2020-03-16 2020-04-19
 United States hCoV-19/USA/NY-WCMP12F07P/2020
 C241T C1059T C3037T C10851T C14408T A23403G G25563T C28789T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871RGG

EPI_ISL_427613
 2020-03-16 2020-04-19
 United States hCoV-19/USA/NY-WCMP12G01P/2020
 ATTAAA1- C241T C1059T C3037T C14408T C14786T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871RG

EPI_ISL_427614
 2020-03-16 2020-04-19
 United States hCoV-19/USA/NY-WCMP12G02P/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C14408T T19653Y A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_427615
 2020-03-16 2020-04-19
 United States hCoV-19/USA/NY-WCMP12G03P/2020
 G11083T C14805T T17247C G26144T G28747T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871RG

EPI_ISL_427616
 2020-03-16 2020-04-19
 United States hCoV-19/USA/NY-WCMP12G06P/2020
 ATTA1- C241T C1059T C3037T C11916T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871KG

EPI_ISL_427617
 2020-03-16 2020-04-19
 United States hCoV-19/USA/NY-WCMP12G08P/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871RGG

EPI_ISL_427618
 2020-03-16 2020-04-19
 United States hCoV-19/USA/NY-WCMP12H01P/2020
 ATTA1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871RG

EPI_ISL_428259
 2020-03-16 2020-04-20
 United States hCoV-19/USA/WI-UW-163/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428260
 2020-03-16 2020-04-20
 United States hCoV-19/USA/WI-UW-164/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C14408T G19101T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428345
 2020-03-16 2020-04-20
 United States hCoV-19/USA/WI-UW-249/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C8016T C14408T T15366C A23403G G25563T G28903T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428490
 2020-03-16 2020-04-21
 Taiwan hCoV-19/Taiwan/78/2020
 A4- C241T C3037T C14408T G19825T A23403G GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_428670 MT371047
 2020-03-16 2020-04-21
 Sri Lanka SARS-CoV-2/human/LKA/COV38/2020
 C37A G1397A C5986T G11083T G18984C C20483T T26181G T28688C G29465T G29742T

EPI_ISL_428824
 2020-03-16 2020-04-22
 Singapore hCoV-19/Singapore/45/2020
 ATTA1- C241T C3037T C14408T G14677R A23403G T24769Y GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_428825
 2020-03-16 2020-04-22
 Singapore hCoV-19/Singapore/46/2020
 A1- T76W T78K C241T C3037T C14408T G15349C C20031A A23403G C27046T GGG28881AAC G29392T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_428875
 2020-03-16 2020-04-22
 Russia hCoV-19/Russia/Moscow-67117/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_428881
 2020-03-16 2020-04-22
 Russia hCoV-19/Russia/Moscow-67142/2020
 T10G C241T C3037T C4002T G10097A G11083T C13536T C14408T A23403G C23731T GGG28881AAC

EPI_ISL_428882
 2020-03-16 2020-04-22
 Russia hCoV-19/Russia/Moscow-67609/2020
 C241T C313T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_429163
 2020-03-16 2020-04-23
 Sweden hCoV-19/Sweden/20-50361/2020
 C241T C3037T C4059A C14408T A23403G GGG28881AAC

EPI_ISL_429209
 2020-03-16 2020-04-23
 Switzerland hCoV-19/Switzerland/GE3650/2020
 ATTAAA1- C241T C3037T G6553T C13862T C14408T A23403G C28836T A29903-

EPI_ISL_429210
 2020-03-16 2020-04-23
 Switzerland hCoV-19/Switzerland/GE8147/2020
 ATTA1- C241T C3037T C14408T A20268G A23403G C28854T A29903-

EPI_ISL_429213
 2020-03-16 2020-04-23
 Switzerland hCoV-19/Switzerland/GE8086/2020
 ATTAAA1- C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_429301
 2020-03-16 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH49/2020
 C241T C1059T C3037T G10465A C14408T C21742T A23403G G25563T G28899T

EPI_ISL_429302
 2020-03-16 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH50/2020
 C241T C1059T C3037T T8788C C14408T A23403G G25563T G26951A

EPI_ISL_429303
 2020-03-16 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH51/2020
 T99C C241T C1059T C3037T C14408T A23403G G25563T C29719T

EPI_ISL_429318
 2020-03-16 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH77/2020
 C241T C1059T C1302T C3037T C14408T A23403G G25563T

EPI_ISL_429321
 2020-03-16 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH80/2020
 C241T C1059T C1302T C3037T A9280G C11074T C14408T A23403G G25563T C29095T

EPI_ISL_429322
 2020-03-16 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH81/2020
 C241T C1059T C1302T C3037T C14408T A23403G G25563T

EPI_ISL_429324
 2020-03-16 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH83/2020
 C241T C1059T C1263T C3037T G13520A C14408T A14691G A23403G G25563T

EPI_ISL_429325
 2020-03-16 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH84/2020
 C241T C3037T C14408T C18744T A20268G A23403G

EPI_ISL_429582
 2020-03-16 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI514/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429676
 2020-03-16 2020-04-24
 Brazil hCoV-19/Brazil/CV16/2020
 ATTAA1- C3037T C14408T A23403G GA27420TC GGG28881AAC T29148C TAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29699-

EPI_ISL_429681
 2020-03-16 2020-04-24
 Brazil hCoV-19/Brazil/CV21/2020
 ATTAA1- C241T C2113T C3037T C14408T C18877T A23403G G25563T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_429866
 2020-03-16 2020-04-24
 Turkey hCoV-19/Turkey/HSGM-4236/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_429993 MT811545
 2020-03-16 2020-04-24
 Jordan SARS-CoV-2/human/JOR/SEARCH-0033-JOR/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A23403G G24977T GGG28881AAC CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_429997 MT811549
 2020-03-16 2020-04-24
 Jordan SARS-CoV-2/human/JOR/SEARCH-0037-JOR/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- G11083T C14805T G26144T G28842T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_430002 MT811554
 2020-03-16 2020-04-24
 Jordan SARS-CoV-2/human/JOR/SEARCH-0044-JOR/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T G11365T C14408T A23403G GGG28881AAC CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_430003 MT811555
 2020-03-16 2020-04-24
 Jordan SARS-CoV-2/human/JOR/SEARCH-0045-JOR/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A23403G GGG28881AAC CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_430188 MT632495
 2020-03-16 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S151/2020
 C1238T C3593T C4683T C8782T C17747T A17858G C18060T A27200G T28144C T28924C

EPI_ISL_430189 MT632560
 2020-03-16 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S152/2020
 C6402T C8782T C15960T C17747T A17858G C18060T T28144C

EPI_ISL_430190 MT632535
 2020-03-16 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S153/2020
 C6402T C8782T C15960T C17747T A17858G C18060T T28144C

EPI_ISL_430191 MT632543
 2020-03-16 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S154/2020
 C1734T C8782T C17747T A17858G C18060T C19186T T28144C

EPI_ISL_430193 MT632614
 2020-03-16 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S156/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_430196 MT632501
 2020-03-16 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S158/2020
 C6310T C8782T C17747T A17858G C18060T G27327T T28144C G28378T

EPI_ISL_430197 MT632622
 2020-03-16 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S159/2020
 C6310T C8782T C17747T A17858G C18060T G27327T T28144C

EPI_ISL_430864
 2020-03-16 2020-04-28
 Sweden hCoV-19/Sweden/20-50360/2020
 C241T C3037T C4059A C14408T A23403G GGG28881AAC

EPI_ISL_431103
 2020-03-16 2020-04-29
 India hCoV-19/India/GMC-KN443/2020
 C1707Y C6312A G11083T C13730T C19524Y C23929T C28311T G29868R C29870A

EPI_ISL_431240
 2020-03-16 2020-04-29
 China hCoV-19/Fujian/IM3520003T/2020
 ATTAAAGGTT1- A26- C28T C241T C3037T C14408T A23403G G25088T GGG28881AAC TCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29834-

EPI_ISL_434464
 2020-03-16 2020-04-29
 Greece hCoV-19/Greece/145/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C8782T C12754T G21255T G25906T C26088T T28144C TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_434477
 2020-03-16 2020-04-29
 Greece hCoV-19/Greece/143/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGG28881AAC TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_434482
 2020-03-16 2020-04-29
 Greece hCoV-19/Greece/156/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGG28881AAC TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_434483
 2020-03-16 2020-04-29
 Greece hCoV-19/Greece/144/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- G11083T C14805T T17247C G26144T TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_434516 MT811566
 2020-03-16 2020-04-29
 Jordan SARS-CoV-2/human/JOR/SEARCH-0084-JOR/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- A2480G C2558T G11083T C14805T TTA21991- G26144T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_434533
 2020-03-16 2020-04-29
 Costa Rica hCoV-19/Costa Rica/0001/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C3037T C6696T C14408T A20268G A21617T A23403G G29862T G29864C A29866G GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_434535
 2020-03-16 2020-04-29
 Costa Rica hCoV-19/Costa Rica/0002/2020
 ATTAAAGGTTTATACCTTCCCAGG1- A26T C241T C3037T C6696T C14408T A20268G A23403G TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_434647
 2020-03-16 2020-04-30
 Sweden hCoV-19/Sweden/20-05721/2020
 C241T C3037T C12213T C14408T A23403G GGG28881AAC

EPI_ISL_434648
 2020-03-16 2020-04-30
 Sweden hCoV-19/Sweden/20-05847/2020
 C241T C3037T C12213T C14408T A23403G C28087T GGG28881AAC

EPI_ISL_434705
 2020-03-16 2020-05-01
 Thailand hCoV-19/Thailand/NIH-2720/2020
 ATTAAAGGTTTATA1- A895G C2942T G4390T C8782T C9598T G11083T A11782G G20134T G24047A T28144C C29741T AGGAGAATGACAAAAAAA29860-

EPI_ISL_434706
 2020-03-16 2020-05-01
 Thailand hCoV-19/Thailand/NIH-2721/2020
 ATTAAAGGTTTATACCTT1- A895G C2942T G4390T C8782T C9598T G20134T G24047A G27877T T28144C AAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAA29812-

EPI_ISL_434714
 2020-03-16 2020-05-01
 United States hCoV-19/USA/TX-HMH03/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T

EPI_ISL_434715
 2020-03-16 2020-05-01
 United States hCoV-19/USA/TX-HMH04/2020
 C241T C3037T C14408T C14980T A20268G A23403G

EPI_ISL_434716
 2020-03-16 2020-05-01
 United States hCoV-19/USA/TX-HMH05/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434717
 2020-03-16 2020-05-01
 United States hCoV-19/USA/TX-HMH06/2020
 T490A C3177T C8782T T18736C T23677C C24034T T26729C C27635T G28077C T28144C A29700G

EPI_ISL_435061
 2020-03-16 2020-05-02
 India hCoV-19/India/NCDC-01537/2020
 C241T C3037T T8022K C14408T A23116T A23403G C25350T C25642T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_435124
 2020-03-16 2020-05-03
 United Arab Emirates hCoV-19/United Arab Emirates/L0879/2020
 C241T C3037T C3373A C11195T C14408T A23403G G28580T GGG28881AAC

EPI_ISL_435125
 2020-03-16 2020-05-03
 United Arab Emirates hCoV-19/United Arab Emirates/L0881/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_435663
 2020-03-16 2020-05-05
 United States hCoV-19/USA/CA-SCCPHD-UC184/2020
 C6312A G11083T C13730T C23929T A25505T C28311T

EPI_ISL_436225
 2020-03-16 2020-05-06
 Spain hCoV-19/Spain/Valencia130/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C8782T C26088T T28144C TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_436291
 2020-03-16 2020-05-06
 Spain hCoV-19/Spain/Valencia196/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C14408T A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_436818 MT439247
 2020-03-16 2020-05-06
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20147/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25563T C26110Y AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_436819 MT439258
 2020-03-16 2020-05-06
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20154/2020
 ATTAAAGGTT1- C241T C1059T C3037T C14408T A23403G G25563T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_437138 MT412176
 2020-03-16 2020-04-29
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20051/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C14408T A23403G G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_437205
 2020-03-16 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0003/2020
 C241T C3037T C14408T G19825T A23403G GGG28881AAC

EPI_ISL_437519
 2020-03-16 2020-05-11
 Czech Republic hCoV-19/Czech Republic/NRL_2615/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C14408T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_437607 MT447171
 2020-03-16 2020-05-01
 Thailand SARS-CoV-2/human/THA/SI205457-NST/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- A895G C2942T C3768T G4390T C8782T C9598T T15354A G20134T G24047A G27877T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875C

EPI_ISL_437884 MT459883
 2020-03-16 2020-05-11
 Greece SARS-CoV-2/human/GRC/215_34644/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- A2480G C2558T G11083T C14267T C14805T A16095G G26144T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_438046
 2020-03-16 2020-05-12
 Austria hCoV-19/Austria/CeMM0209/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_438047
 2020-03-16 2020-05-12
 Austria hCoV-19/Austria/CeMM0210/2020
 C241T A1140C C3037T C4194Y C8956Y C14408T A19652G A20268G A23403G A29866R AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_438048
 2020-03-16 2020-05-12
 Austria hCoV-19/Austria/CeMM0212/2020
 C8782T T9530K C26088T T27801C T28144C AAA29901-

EPI_ISL_438049
 2020-03-16 2020-05-12
 Austria hCoV-19/Austria/CeMM0213/2020
 C241T C3037T G12832A C14408T T22521K A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_438050
 2020-03-16 2020-05-12
 Austria hCoV-19/Austria/CeMM0216/2020
 C241T C3037T G3514T C10582T C14408T A20268G A23403G G29734C AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_438051
 2020-03-16 2020-05-12
 Austria hCoV-19/Austria/CeMM0217/2020
 C241T C3037T G12832A C14408T C20457T A23403G GGG28881AAC AAA29901-

EPI_ISL_438052
 2020-03-16 2020-05-12
 Austria hCoV-19/Austria/CeMM0218/2020
 C241T C3037T G12832A C14408T C19255T C20457T A23403G GGG28881AAC AAAAAAAAAAAAAAA29889-

EPI_ISL_438053
 2020-03-16 2020-05-12
 Austria hCoV-19/Austria/CeMM0219/2020
 C241T C3037T G12832A C14408T C20457T A23403G G24173K GGG28881AAC AAAAA29899-

EPI_ISL_438054
 2020-03-16 2020-05-12
 Austria hCoV-19/Austria/CeMM0220/2020
 C241T C3037T G10610T C14408T T22521K A23403G C27046T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_438055
 2020-03-16 2020-05-12
 Austria hCoV-19/Austria/CeMM0221/2020
 C241T C3037T C14408T A20268G A23403G G29734C AAAAAAAAAAAAAAAA29888-

EPI_ISL_438226
 2020-03-16 2020-05-12
 United States hCoV-19/USA/MD-HP00033/2020
 C241T C1059T C3037T G10523C C12119T C14408T C18086A A23403G G25563T

EPI_ISL_440436
 2020-03-16 2020-05-12
 United Kingdom hCoV-19/England/CAMB-750F7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G T25202K G25429T T26861Y CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_441419
 2020-03-16 2020-05-12
 United Kingdom hCoV-19/Northern Ireland/NIRE-FB3F0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- ATG1605- C6696T A9737G C11001T C22097T T22729C C29870A

EPI_ISL_441421
 2020-03-16 2020-05-12
 United Kingdom hCoV-19/Northern Ireland/NIRE-FB41B/2020
 ATTAAAGGTT1- ATG1605- C6696T C11001T C21707T C29870A

EPI_ISL_441425
 2020-03-16 2020-05-12
 United Kingdom hCoV-19/Northern Ireland/NIRE-FB457/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- ATG1605- C3828Y C6696T C11001T C29870A

EPI_ISL_441429
 2020-03-16 2020-05-12
 United Kingdom hCoV-19/Northern Ireland/NIRE-FB493/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- A1515G T7831C C9223T G11083T C14805T T17247C A17799G G26144T C29870A

EPI_ISL_441434
 2020-03-16 2020-05-12
 United Kingdom hCoV-19/Northern Ireland/NIRE-FB4EE/2020
 ATTAAAGGTTTATACCTT1- ATG1605- C6696T C11001T G27364C C29870A

EPI_ISL_443193
 2020-03-16 2020-05-12
 Singapore hCoV-19/Singapore/101/2020
 T514C G1607R AC25274WM C26882T AAAAAAAAAAAA29892-

EPI_ISL_443199
 2020-03-16 2020-05-12
 Singapore hCoV-19/Singapore/107/2020
 C241T C3037T T5840C C14408T A23403G GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_443226
 2020-03-16 2020-05-12
 Singapore hCoV-19/Singapore/134/2020
 C14636T AAAAAAAAAAAA29892-

EPI_ISL_443227
 2020-03-16 2020-05-12
 Singapore hCoV-19/Singapore/135/2020
 C6310A C6312A G11083T C13730T C19524T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_443229
 2020-03-16 2020-05-12
 Singapore hCoV-19/Singapore/137/2020
 C241T A1461G G2086T C3037T C5730T C14408T A23403G GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_443266
 2020-03-16 2020-05-12
 France hCoV-19/France/B5322/2020
 A6G C241T C1059T C3037T C9891T G11083T C14408T C16469T A23403G G25563T GAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29864-

EPI_ISL_444569
 2020-03-16 2020-05-14
 United States hCoV-19/USA/IL-NM074/2020
 T490A C3177T C8782T T18736C G21624C C24034T T26729C C27635T G28077C T28144C A29567C A29700G

EPI_ISL_444570
 2020-03-16 2020-05-14
 United States hCoV-19/USA/IL-NM075/2020
 C241T C1059T C3037T C14408T A23403G G25563T C26111T

EPI_ISL_444977
 2020-03-16 2020-05-14
 Spain hCoV-19/Spain/Barcelona_VH1438/2020
 ATTAAA1- C241T C3037T C14408T A20268G A23403G G29734C

EPI_ISL_445273
 2020-03-16 2020-05-15
 Chile hCoV-19/Chile/Rancagua_1/2020
 A1T T3A A5T C241T C3037T C14408T C19973T A20268G A23403G G29734C TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_445277
 2020-03-16 2020-05-15
 Chile hCoV-19/Chile/Rancagua_5/2020
 A1T T3A A5T C241T C3037T G10265A C14408T A23403G GGG28881AAC G29398T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_445278
 2020-03-16 2020-05-15
 Chile hCoV-19/Chile/Rancagua_6/2020
 ATTAAA1- C241T C3037T C14408T C18828T A20268G A23403G ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_445279
 2020-03-16 2020-05-15
 Chile hCoV-19/Chile/Temuco_2/2020
 ATTAAA1- C241T C3037T C8389T A12506R C14408T A23403G G25563T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_445305
 2020-03-16 2020-05-15
 Chile hCoV-19/Chile/Santiago_26/2020
 ATTAA1GCCTT C241T C3037T C14408T C17639T A20268G A23403G G27506T C28638T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838T

EPI_ISL_445306
 2020-03-16 2020-05-15
 Chile hCoV-19/Chile/Santiago_27/2020
 ATTAAAGGTTTATACC1- C8782T T12364A C18138G A19719T C26088T T28144C A29860C GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_445307
 2020-03-16 2020-05-15
 Chile hCoV-19/Chile/Santiago_28/2020
 ATTAAAGGTTTATACCTTCCCAG1- A27C C241T C3037T G5230T C14408T C19269T A20268G A23403G G29843C T29845C T29848C GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853C

EPI_ISL_445308
 2020-03-16 2020-05-15
 Chile hCoV-19/Chile/Santiago_29/2020
 -3GCTTCAGTTG GG7AA C241T C3037T A12506R C14408T A20268G A23403G ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_445309
 2020-03-16 2020-05-15
 Chile hCoV-19/Chile/Santiago_30/2020
 ATT1GAG A5C C241T C3037T C14408T A20268G A23403G ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_445310
 2020-03-16 2020-05-15
 Chile hCoV-19/Chile/Santiago_31/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T G1319A C3037T C8389T A12506R C14408T A23403G G25563T CA29838TG GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_445322
 2020-03-16 2020-05-15
 Chile hCoV-19/Chile/Santiago_43/2020
 A1C C8782T T10771C C17747T A17858G C18060T T28144C TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_445323
 2020-03-16 2020-05-15
 Chile hCoV-19/Chile/Santiago_44/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T C3037T C14408T A20268G A23403G CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838T

EPI_ISL_445359
 2020-03-16 2020-05-15
 Chile hCoV-19/Chile/Santiago_63/2020
 -TA2AGTGAGTACACTGGTAATTACCAGTGTGGTCACTATAAACATATAACTTCTAAAGAAACTTTGTATTGCAAG A6C -10GCTTTAC C241T C3037T G10265A C14408T A23403G GGG28881AAC G29398T T29859G G29861A GAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29864-

EPI_ISL_447254
 2020-03-16 2020-05-17
 Taiwan hCoV-19/Taiwan/TSGH-28/2020
 C241T C2453A C2502A T2517A C3037T G4910T A5220C T5224A A5264G G7289T G11230T G11528C T12939G C14120T A14201T A18743T G20725T A22725C T22757C A23403G C29095T A29903GAAAAAAAAAAA

EPI_ISL_447532
 2020-03-16 2020-05-17
 Spain hCoV-19/Spain/Barcelona_VH1449/2020
 ATTAAAGGTTTATACCTTCCC1- C241T C3037T C14408T A20268G A23403G

EPI_ISL_447641 MT459884
 2020-03-16 2020-05-11
 Greece SARS-CoV-2/human/GRC/216_34732/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_447836 MT459861
 2020-03-16 2020-05-11
 Greece SARS-CoV-2/human/GRC/145_34726/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C8782T C12754T G21255T G25906T C26088T T28144C ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_450043
 2020-03-16 2020-05-19
 United States hCoV-19/USA/NY-PV09355/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C1059T C3037T C14408T A23403G G25563T C27964T TAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29775-

EPI_ISL_450044
 2020-03-16 2020-05-19
 United States hCoV-19/USA/NY-PV09356/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C2037T C3037T C10851T C14408T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450046
 2020-03-16 2020-05-19
 United States hCoV-19/USA/NY-PV09358/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_450047
 2020-03-16 2020-05-19
 United States hCoV-19/USA/NY-PV09359/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C1059T C3037T T5278C C10851T C14408T A23403G G25563T GTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29759-

EPI_ISL_450404 MT270815
 2020-03-16 2020-03-30
 China SARS-CoV-2/human/HKG/case163_VM20009579/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_450700 MT506885
 2020-03-16 2020-05-21
 United States SARS-CoV-2/human/USA/WI-UW-20/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T6814C G11083T C14408T G22203T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_450796 MT507274
 2020-03-16 2020-05-22
 Jamaica SARS-CoV-2/human/JAM/JM-CDC-6365/2020
 A2480G C2558T G11083T C14805T G26144T G28321A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_450797 MT507275
 2020-03-16 2020-05-22
 Jamaica SARS-CoV-2/human/JAM/JM-CDC-6603/2020
 C241T C1059T C3037T C14408T A23403G C25276T G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_450798 MT507794
 2020-03-16 2020-05-22
 Jamaica SARS-CoV-2/homo sapien/JAM/JM-CDC-6729/2020
 C241T C1059T C3037T T10299Y C11916T C14408T C18998T A23403G G25563T G28899R G29540A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_451694 LR824255
 2020-03-16 2020-05-25
 Switzerland 100110
 C241T C3037T C14408T T19349W T19458Y T19482K T19516K A23403G G27758T C28724T GGG28881AAC

EPI_ISL_451695 LR824270
 2020-03-16 2020-05-25
 Switzerland 100111
 C241T C3037T C7735T C14408T C15324T T19482K A19526W T22516W A23403G

EPI_ISL_451697 LR824268
 2020-03-16 2020-05-25
 Switzerland 100113
 C241T C3037T C14408T C15324T C19325M C19884T A23403G

EPI_ISL_451699 LR824257
 2020-03-16 2020-05-25
 Switzerland 100115
 C241T C3037T C14408T A20268G C22383Y A22457R G22487K T22516W A23403G

EPI_ISL_451701 LR824273
 2020-03-16 2020-05-25
 Switzerland 100117
 C241T C3037T C14408T C15324T T19301K A19339M T19431Y T19482K A22481R A23403G G28881T

EPI_ISL_451702 LR824271
 2020-03-16 2020-05-25
 Switzerland 100118
 C241T C3037T C14408T C15324T C20930Y A23403G C23896Y C27874Y G28881T

EPI_ISL_451706 LR824259
 2020-03-16 2020-05-25
 Switzerland 100122
 C241T C3037T C14408T C19170T G19509A A23403G GGG28881AAC

EPI_ISL_451708 LR824263
 2020-03-16 2020-05-25
 Switzerland 100124
 C241T C3037T T6699Y C14408T C15324T C22347S A23403G

EPI_ISL_451709 LR824266
 2020-03-16 2020-05-25
 Switzerland 100125
 C241T C3037T C14408T C15324T C19317M T19482K T22479K T22516W A23403G

EPI_ISL_451711 LR824262
 2020-03-16 2020-05-25
 Switzerland 100127
 C241T C3037T C8950T C14408T A22374R T22515K A23403G GGG28881AAC

EPI_ISL_451712 LR824276
 2020-03-16 2020-05-25
 Switzerland 100128
 C241T C3037T A13610R C13862T C14408T A19298W T19427W G19735K C22446Y C22513M A23403G G25641K C28836T

EPI_ISL_451713 LR824274
 2020-03-16 2020-05-25
 Switzerland 100129
 C241T C346Y C3037T C14408T C15324T C18176Y A23403G

EPI_ISL_451716 LR824277
 2020-03-16 2020-05-25
 Switzerland 100132
 C241T C3037T C3373A C14408T A19548R A23403G GGG28881AAC

EPI_ISL_451717 LR824291
 2020-03-16 2020-05-25
 Switzerland 100133
 C241T C3037T A6444G C14408T C15324T T22516W A23403G C28887T

EPI_ISL_451723 LR824283
 2020-03-16 2020-05-25
 Switzerland 100139
 C241T C3037T C14408T C15324T A19298W T22516W A23403G

EPI_ISL_451728 LR824289
 2020-03-16 2020-05-25
 Switzerland 100144
 C241T C3037T C11109Y C14408T C15324T A19298W C19366M A19392R A19548R A22379W A23403G C26527Y C26533Y C26559Y A27218R

EPI_ISL_451730 LR824288
 2020-03-16 2020-05-25
 Switzerland 100146
 C241T C3037T C14408T T22516K A23403G

EPI_ISL_451732 LR824294
 2020-03-16 2020-05-25
 Switzerland 100148
 C241T C1059T C3037T C10015T C14408T A19298W C19320Y T19456W T19468Y T19482K A22466W A23403G G25563T

EPI_ISL_451734 LR824295
 2020-03-16 2020-05-25
 Switzerland 100150
 C241T C3037T C14408T C19170T A19407R G19417K A19471W T19482K G19509A A19548R A23403G GGG28881AAC

EPI_ISL_451738 LR824311
 2020-03-16 2020-05-25
 Switzerland 100154
 C241T C3037T C8293T C14408T C17118T T18488C C19454Y C19463M T22515K A23403G T24739C A26530R

EPI_ISL_451958 MT500122
 2020-03-16 2020-05-21
 Pakistan SARS-CoV-2/human/PAK/KHI1/2020
 ATTAAAGGTTTATAC1- ATG1605- C1912T C10582T C26022T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_452202
 2020-03-16 2020-05-27
 India hCoV-19/India/NIV-2810/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C8782T T10771C C12312T C17747T A17858G C18060T T28144C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830T

EPI_ISL_452229
 2020-03-16 2020-05-27
 Sweden hCoV-19/Sweden/20-05819/2020
 C241T AAGTCATTT686- C1059T C3037T C14408T A23403G G25563T

EPI_ISL_452289
 2020-03-16 2020-05-27
 United States hCoV-19/USA/MI-MDHHS-SC20415/2020
 C241T C3037T C14408T A20268G A23403G

EPI_ISL_452292
 2020-03-16 2020-05-27
 United States hCoV-19/USA/MI-MDHHS-SC20418/2020
 C241T C3037T C14408T A20268G A23403G T28382C A29596G G29734C

EPI_ISL_452297
 2020-03-16 2020-05-27
 United States hCoV-19/USA/MI-MDHHS-SC20423/2020
 C241T C1059T C3037T C5365Y C14408T A23403G G25563T

EPI_ISL_452323
 2020-03-16 2020-05-27
 United States hCoV-19/USA/MI-MDHHS-SC20449/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAA29889-

EPI_ISL_452328
 2020-03-16 2020-05-27
 China hCoV-19/Beijing/DT-travelPAK01/2020
 C6312A G11083T C13730T C18029T C28311T

EPI_ISL_452335
 2020-03-16 2020-05-27
 China hCoV-19/Beijing/DT-travelUK02/2020
 C3787T T8022G C16362T T19299G C20897T T20901C

EPI_ISL_452343
 2020-03-16 2020-05-27
 China hCoV-19/Beijing/DT-travelES01/2020
 C241T C3037T A23403G

EPI_ISL_454018
 2020-03-16 2020-05-28
 Portugal hCoV-19/Portugal/PT0302/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3140T C14408T A23403G G24077T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454030
 2020-03-16 2020-05-28
 Portugal hCoV-19/Portugal/PT0314/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- C241T C3037T C3140T C14408T A23403G G24077T C29555T CGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29754-

EPI_ISL_454038
 2020-03-16 2020-05-28
 Portugal hCoV-19/Portugal/PT0322/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3140T C14408T A23403G G24077T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454041
 2020-03-16 2020-05-28
 Portugal hCoV-19/Portugal/PT0325/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454042
 2020-03-16 2020-05-28
 Portugal hCoV-19/Portugal/PT0326/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC A29396G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454043
 2020-03-16 2020-05-28
 Portugal hCoV-19/Portugal/PT0327/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3140T C14408T A23403G G24077T C25989T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454044
 2020-03-16 2020-05-28
 Portugal hCoV-19/Portugal/PT0328/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C4002T G10097A C13536T C14408T C20368A A23403G C23731T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454047
 2020-03-16 2020-05-28
 Portugal hCoV-19/Portugal/PT0331/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- C241T C3037T C14408T A23403G GGG28881AAC CGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29754-

EPI_ISL_454337
 2020-03-16 2020-05-28
 Portugal hCoV-19/Portugal/PT0614/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G T28678C GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454762
 2020-03-16 2020-05-29
 Netherlands hCoV-19/Netherlands/Utrecht_10013/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T G3955T C14408T A23403G G25534T C27046T GGG28881AAC GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_454763
 2020-03-16 2020-05-29
 Netherlands hCoV-19/Netherlands/Utrecht_10014/2020
 ATTAAAGGTTTATACC1- C241T C1594T C3037T C8290T C11109T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_454764
 2020-03-16 2020-05-29
 Netherlands hCoV-19/Netherlands/Utrecht_10015/2020
 ATTAAA1- G2086T C7528T C8782T G16381A T28144C G28878A G29742A AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_454788
 2020-03-16 2020-05-29
 Netherlands hCoV-19/Netherlands/NoordBrabant_10039/2020
 ATTAAAGGTTTAT1- T514C ATG1605- G6662A C16762T T20799C A28664G AAAAAA29898-

EPI_ISL_454946
 2020-03-16 2020-05-29
 China hCoV-19/Wuhan/HB-WH3-189/2020
 AAGATTTTC729-

EPI_ISL_454969
 2020-03-16 2020-05-29
 China hCoV-19/Wuhan/HB-WH5-224/2020
 C26447G

EPI_ISL_455384
 2020-03-16 2020-05-29
 China hCoV-19/Wuhan/HB-WH3-190/2020
 C3717T TG14865- T20965- C23538T

EPI_ISL_455394
 2020-03-16 2020-05-29
 China hCoV-19/Wuhan/HB-WH5-235/2020
 C1185T TA18628- T23563C

EPI_ISL_455397
 2020-03-16 2020-05-29
 China hCoV-19/Wuhan/HB-WH6-244/2020
 TG14865-

EPI_ISL_455947
 2020-03-16 2020-06-01
 Thailand hCoV-19/Thailand/Bangkok-CONI-0154/2020
 ATTAAAGGTTTATACC1- A895G C2942T G4390T C8782T C9598T G20134T G24047A T28144C

EPI_ISL_456148
 2020-03-16 2020-06-02
 Colombia hCoV-19/Colombia/INS-79890/2020
 C241T C3037T C10507T C14408T C16163T C18877T A23403G G25563T

EPI_ISL_456155
 2020-03-16 2020-06-02
 Colombia hCoV-19/Colombia/INS-80245/2020
 C241T C3037T C7564T C14408T A20268G A23403G G29734C

EPI_ISL_456159
 2020-03-16 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR0462/2020
 C1684T G11083T G13627T C14805T C15540T G26144T A28338G A29403G

EPI_ISL_456176
 2020-03-16 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR0993/2020
 ATG1605- C8090T T25674C

EPI_ISL_456179
 2020-03-16 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR0996/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_456180
 2020-03-16 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR0999/2020
 C8782T C17747T A17858G C18060T C21614T A24694T A27675C T28144C

EPI_ISL_457753 MT646097
 2020-03-16 2020-06-02
 United States SARS-CoV-2/human/USA/DC-HP00035/2020
 A2480G C2558T A4912C G11083T C14805T C17010A C20133Y C21575T G26144T

EPI_ISL_457754 MT646098
 2020-03-16 2020-06-02
 United States SARS-CoV-2/human/USA/MD-HP00039/2020
 C241T C2416T C3037T G4523A C10712T C14408T A23403G G25563T C27673Y

EPI_ISL_457789 MT646094
 2020-03-16 2020-06-02
 United States SARS-CoV-2/human/USA/MD-HP00031/2020
 T490A C3177T C6040T C8782T G12478A T18736C C19488T C24034T T26729C G28077C T28144C C28896G A29700G

EPI_ISL_457803 MT646074
 2020-03-16 2020-06-02
 United States SARS-CoV-2/human/USA/MD-HP00061/2020
 C241T C3037T C14408T T19839C A23403G C28833T GGG28881AAC

EPI_ISL_457806 MT646076
 2020-03-16 2020-06-02
 United States SARS-CoV-2/human/USA/MD-HP00064/2020
 C241T C1059T C3037T G10523C C12119T C14408T C18086A A23403G G25563T

EPI_ISL_457820 MT646091
 2020-03-16 2020-06-02
 United States SARS-CoV-2/human/USA/MD-HP00132/2020
 C241T C3037T C10116T G10697A C14408T C18877T G19847A A23403G G25563T A28480T

EPI_ISL_458230
 2020-03-16 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0316260/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4561A A9826G A13947T C14408T G16873A C21676T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_459953
 2020-03-16 2020-06-05
 Malaysia hCoV-19/Malaysia/IMR_WC2423/2020
 T2C AA4TG C6312A G11083T C13730T C19524T C23929T C28311T AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_459954
 2020-03-16 2020-06-05
 Malaysia hCoV-19/Malaysia/IMR_WC2453/2020
 -2AGCTAAATCTTCTGAA -5TTGGTGAGAATGTCCATGTAGTTAACTTT C2508A C6310A C6312A G11083T C13730T C19524T C23929T C28311T ATGA29866GCTG AA29871CT A29874T AAA29876TGG A29881G AAAAAAAAAAAAAAAAAAAAA29883GC

EPI_ISL_459976
 2020-03-16 2020-06-05
 Morocco hCoV-19/Morocco/6898/2020
 ATTAAAGGTTTATACCTTC1- C241T C2416T C3037T C14408T G16206T A23403G G25563T G29773T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_460048
 2020-03-16 2020-06-05
 United States hCoV-19/USA/MN-MDH-109/2020
 ATTA1- C6312A G11083T C13730T C23929T C28311T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_460049
 2020-03-16 2020-06-05
 United States hCoV-19/USA/MN-MDH-123/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- A38G C241T C1059T C3037T C14408T A23403G G25563T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_460062
 2020-03-16 2020-06-05
 United States hCoV-19/USA/MN-MDH-72/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C1059T C3037T C14408T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_460064
 2020-03-16 2020-06-05
 United States hCoV-19/USA/MN-MDH-75/2020
 ATTAAAGGTTTA1- A3069G C8782T C17747T A17858G C18060T C23373T T28144C CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_460066
 2020-03-16 2020-06-05
 United States hCoV-19/USA/MN-MDH-79/2020
 C241T C1059T C3037T C14408T A20230G A23403G G25186A G25563T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_460077
 2020-03-16 2020-06-05
 United States hCoV-19/USA/MN-MDH-97/2020
 AT1- C241T C1059T C3037T T4138C C14408T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_460078
 2020-03-16 2020-06-05
 United States hCoV-19/USA/MN-MDH-98/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- A38G C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_460224 MT520299
 2020-03-16 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00521/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C3037T C14408T C22450T A23403G G26995T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460778
 2020-03-16 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_615/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16308T T18417C C20148T A23403G C27213T G29422T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460779
 2020-03-16 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_616/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T C17125T T17247C G26144T G27201T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460815
 2020-03-16 2020-06-06
 Netherlands hCoV-19/Netherlands/Overijssel_26/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C11109T C14408T C17762T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460817
 2020-03-16 2020-06-06
 Netherlands hCoV-19/Netherlands/Overijssel_28/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G1440A C3037T C14408T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461116
 2020-03-16 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_681/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_462416
 2020-03-16 2020-06-08
 Singapore hCoV-19/Singapore/298/2020
 T21728Y A22255R AAAAAAAAAAAA29892-

EPI_ISL_463975
 2020-03-16 2020-06-11
 Canada hCoV-19/Canada/ON_MU-S26/2020
 AT1- C241T C3037T G4201T C14408T A23403G C26527T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_463977
 2020-03-16 2020-06-11
 Canada hCoV-19/Canada/ON_MU-S29/2020
 ATTAA1- C241T C3037T C14408T C19550M A23403G GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_467094
 2020-03-16 2020-06-12
 Spain hCoV-19/Spain/COV001551/2020
 C241T C1059T C3037T T13006C C14408T G17302T G23311T A23403G G25563T C25688T C25693T

EPI_ISL_467099
 2020-03-16 2020-06-12
 Spain hCoV-19/Spain/COV001533/2020
 C8782T T9477A C14805T C15654T G25979T T28144C C28657T C28863T C29870A

EPI_ISL_467109
 2020-03-16 2020-06-12
 Spain hCoV-19/Spain/COV001534/2020
 C8782T T9477A G11083K C14805T G25979T T28144C C28657T C28863T C29870A

EPI_ISL_467110
 2020-03-16 2020-06-12
 Spain hCoV-19/Spain/COV001547/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T C29870A

EPI_ISL_467111
 2020-03-16 2020-06-12
 Spain hCoV-19/Spain/COV001556/2020
 C8782T T9477A C14805T A23403R G25979T T28144C C28657T C28863T C29870A

EPI_ISL_467119
 2020-03-16 2020-06-12
 Spain hCoV-19/Spain/COV001549/2020
 G11083T G26144T TTTTAAAGTTTCCATTTGGAATCTTGAT27264-

EPI_ISL_467131
 2020-03-16 2020-06-12
 Spain hCoV-19/Spain/COV001546/2020
 C8782T T9477A C14805T C18452T G25979T T28144C C28657T C28863T C29870A

EPI_ISL_467138
 2020-03-16 2020-06-12
 Spain hCoV-19/Spain/COV001555/2020
 C241T C3037T C14408T A20268G A23403G C28854T C29870A

EPI_ISL_467140
 2020-03-16 2020-06-12
 Spain hCoV-19/Spain/COV001536/2020
 C8782T T9477A C14805T T18168Y A23586G G25979T T28144C C28292A C28657T C28863T C29870A

EPI_ISL_467144
 2020-03-16 2020-06-12
 Spain hCoV-19/Spain/COV001535/2020
 C8782T T9477A C9810T C14805T G25979T T28144C C28657T C28863T C29870A

EPI_ISL_467151
 2020-03-16 2020-06-12
 Spain hCoV-19/Spain/COV001561/2020
 C241T C3037T C14408T A20268G A23403G C28854T C29870A

EPI_ISL_467174
 2020-03-16 2020-06-12
 Spain hCoV-19/Spain/COV001539/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T C29870A

EPI_ISL_467182
 2020-03-16 2020-06-12
 Spain hCoV-19/Spain/COV001544/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T

EPI_ISL_467183
 2020-03-16 2020-06-12
 Spain hCoV-19/Spain/COV001548/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T

EPI_ISL_467604
 2020-03-16 2020-06-14
 United States hCoV-19/USA/NM-UNM-00023/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_467811 MT614523
 2020-03-16 2020-06-15
 United States SARS-CoV-2/human/USA/CA-QDX-117/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2939T C3037T C14408T A23403G G28882T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467813 MT614525
 2020-03-16 2020-06-15
 United States SARS-CoV-2/human/USA/CA-QDX-138/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467814 MT614526
 2020-03-16 2020-06-15
 United States SARS-CoV-2/human/USA/CA-QDX-148/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C6040T C8782T G12478A A13953G T18736C C21575T C24034T T26729C G28077C T28144C C28896G A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467815 MT614447
 2020-03-16 2020-06-15
 United States SARS-CoV-2/human/USA/CA-QDX-153/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467817 MT614449
 2020-03-16 2020-06-15
 United States SARS-CoV-2/human/USA/CA-QDX-155/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C12439T C17747T A17858G C18060T T28144C C28770T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467818 MT614450
 2020-03-16 2020-06-15
 United States SARS-CoV-2/human/USA/CA-QDX-156/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8917T C14408T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467820 MT614452
 2020-03-16 2020-06-15
 United States SARS-CoV-2/human/USA/CA-QDX-158/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T AAGTCATTT686- C1059T C3037T C14408T C22183T A23403G G25563T A26433G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467821 MT614453
 2020-03-16 2020-06-15
 United States SARS-CoV-2/human/USA/CA-QDX-159/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T AAGTCATTT686- C1059T C3037T C14408T C22183T A23403G G25563T A26433G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467822 MT614454
 2020-03-16 2020-06-15
 United States SARS-CoV-2/human/USA/CA-QDX-160/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467823 MT614455
 2020-03-16 2020-06-15
 United States SARS-CoV-2/human/USA/CA-QDX-161/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8917T C14408T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467824 MT614456
 2020-03-16 2020-06-15
 United States SARS-CoV-2/human/USA/CA-QDX-162/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467831 MT614463
 2020-03-16 2020-06-15
 United States SARS-CoV-2/human/USA/CA-QDX-40/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G2840A C8782T C17747T A17858G C18060T C24381T A26045G T28144C C29429A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467833 MT614465
 2020-03-16 2020-06-15
 United States SARS-CoV-2/human/USA/CA-QDX-44/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4455T C14408T G14622A A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467835 MT614467
 2020-03-16 2020-06-15
 United States SARS-CoV-2/human/USA/CA-QDX-46/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C19264T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467840 MT614472
 2020-03-16 2020-06-15
 United States SARS-CoV-2/human/USA/CA-QDX-73/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17747T A17858G C18060T A24694T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467842 MT614474
 2020-03-16 2020-06-15
 United States SARS-CoV-2/human/USA/CA-QDX-78/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G2840A C8782T C17747T A17858G C18060T A22296G A26045G T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467875 MT614538
 2020-03-16 2020-06-15
 United States SARS-CoV-2/human/USA/NJ-QDX-124/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A8031G C8890T C11916T C14408T C18998T A23403G G25563T G29540A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467885 MT614543
 2020-03-16 2020-06-15
 United States SARS-CoV-2/human/USA/NY-QDX-125/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467886 MT614544
 2020-03-16 2020-06-15
 United States SARS-CoV-2/human/USA/NY-QDX-128/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467887 MT614545
 2020-03-16 2020-06-15
 United States SARS-CoV-2/human/USA/NY-QDX-130/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- -11075TTT G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467889 MT614547
 2020-03-16 2020-06-15
 United States SARS-CoV-2/human/USA/NY-QDX-136/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A20755C A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467890 MT614548
 2020-03-16 2020-06-15
 United States SARS-CoV-2/human/USA/NY-QDX-137/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17470T C17747T A17858G C18060T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467891 MT614549
 2020-03-16 2020-06-15
 United States SARS-CoV-2/human/USA/NY-QDX-139/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17747T A17858G C18060T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467893 MT614551
 2020-03-16 2020-06-15
 United States SARS-CoV-2/human/USA/NY-QDX-142/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467897 MT614499
 2020-03-16 2020-06-15
 United States SARS-CoV-2/human/USA/NY-QDX-19/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C8782T A10312G T18736C G19684T C24034T T26729C C27635T G28077C T28144C A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467900 MT614502
 2020-03-16 2020-06-15
 United States SARS-CoV-2/human/USA/NY-QDX-42/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467901 MT614503
 2020-03-16 2020-06-15
 United States SARS-CoV-2/human/USA/NY-QDX-72/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1917T C3037T C14408T G20005A A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467978
 2020-03-16 2020-06-16
 United States hCoV-19/USA/CA-SR0455/2020
 C8782T C17747T A17858G C18060T A24694T T28144C

EPI_ISL_468016
 2020-03-16 2020-06-16
 Australia hCoV-19/Australia/SAP112/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_468389 MT628125
 2020-03-16 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1414/2020
 C241T C2788Y C3037T G10793T G12067K C14408T C18877T A23403G G25563T C29311T AAAAAAAAAAAAAA29890-

EPI_ISL_471235
 2020-03-16 2020-06-19
 United States hCoV-19/USA/WI-WSLH-200070/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G G25563T G28871A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471249
 2020-03-16 2020-06-19
 United States hCoV-19/USA/WI-WSLH-200085/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471250
 2020-03-16 2020-06-19
 United States hCoV-19/USA/WI-WSLH-200086/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471251
 2020-03-16 2020-06-19
 United States hCoV-19/USA/WI-WSLH-200087/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4897T C6027T C9962T A10236G G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_474833
 2020-03-16 2020-06-23
 Spain hCoV-19/Spain/Alcala_la_Real-COV002890/2020
 C2143T C8782T T9477A C14805T G25785T G25979T A27747G T28144C C28657T C28863T

EPI_ISL_474897
 2020-03-16 2020-06-23
 Spain hCoV-19/Spain/Guadix-COV002887/2020
 C8782T T9477A C14805T G19858T G25979T T28144C C28657T C28863T

EPI_ISL_475092
 2020-03-16 2020-06-23
 Sweden hCoV-19/Sweden/20-08209/2020
 C241T C3037T C14195A C14408T A23403G

EPI_ISL_475093
 2020-03-16 2020-06-23
 Sweden hCoV-19/Sweden/20-08210/2020
 C241T C3037T C14408T T19839C A23403G G25552T GGG28881AAC

EPI_ISL_475094
 2020-03-16 2020-06-23
 Sweden hCoV-19/Sweden/20-08211/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_475095
 2020-03-16 2020-06-23
 Sweden hCoV-19/Sweden/20-50362/2020
 C241T C3037T C3373A C14408T A23403G GGG28881AAC

EPI_ISL_475137
 2020-03-16 2020-06-23
 Sweden hCoV-19/Sweden/20-50370/2020
 C241T C1059T C3037T C5654T C14408T A23403G G25563T

EPI_ISL_475138
 2020-03-16 2020-06-23
 Sweden hCoV-19/Sweden/20-50371/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_475813
 2020-03-16 2020-06-25
 Austria hCoV-19/Austria/CeMM0366/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T658C C3037T C5654T C14408T A23403G A24862G C28629T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475863
 2020-03-16 2020-06-25
 Austria hCoV-19/Austria/CeMM0439/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475874
 2020-03-16 2020-06-25
 Austria hCoV-19/Austria/CeMM0463/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G17325T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475880
 2020-03-16 2020-06-25
 Austria hCoV-19/Austria/CeMM0475/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475906
 2020-03-16 2020-06-25
 Austria hCoV-19/Austria/CeMM0555/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G20709T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475907
 2020-03-16 2020-06-25
 Austria hCoV-19/Austria/CeMM0556/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440R G2891R C7011Y G11083T C14805Y C18086Y G26144K G28842K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475908
 2020-03-16 2020-06-25
 Austria hCoV-19/Austria/CeMM0557/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A610G G18985T C19366T G29543T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475909
 2020-03-16 2020-06-25
 Austria hCoV-19/Austria/CeMM0558/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475924
 2020-03-16 2020-06-25
 Austria hCoV-19/Austria/CeMM0577/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4255T T12034C C14408T A23403G A26530G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476817
 2020-03-16 2020-06-26
 Singapore hCoV-19/Singapore/483/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C1722T C3037T C11109T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476902 MT827819
 2020-03-16 2020-06-27
 United States SARS-CoV-2/human/USA/WA-UW-1128/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C1238T C8782T C17747T A17858G C18060T T28144C T28924C -29904AAAAAAAAAA

EPI_ISL_477171
 2020-03-16 2020-06-29
 Singapore hCoV-19/Singapore/481/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G5230T C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477193
 2020-03-16 2020-06-29
 Italy hCoV-19/Italy/IZSPB_45/2020
 ATTA1- GTT8AGC C241T C3037T C14408T A23403G A29879T A29881T AAAAAAAAAAAAAAAAAAAAA29883T

EPI_ISL_477194
 2020-03-16 2020-06-29
 Italy hCoV-19/Italy/IZSPB_39/2020
 -2AGGGA C241T C3037T G3066A C14408T A23403G GGG28881AAC GTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29747T

EPI_ISL_478537
 2020-03-16 2020-06-30
 United Kingdom hCoV-19/England/NORT-284248/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A T13216G C14408T A19960G A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478539
 2020-03-16 2020-06-30
 United Kingdom hCoV-19/England/NORT-284266/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479868
 2020-03-16 2020-07-01
 Japan hCoV-19/Japan/PG-0153/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAAC1- C8782T G16381A T17877C T28144C G28878A G29742A AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_479891
 2020-03-16 2020-07-01
 Japan hCoV-19/Japan/PG-0185/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T C313T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479892
 2020-03-16 2020-07-01
 Japan hCoV-19/Japan/PG-0187/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- T4402C G5062T C8782T T28144C G29742T ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_479893
 2020-03-16 2020-07-01
 Japan hCoV-19/Japan/PG-0188/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G GGG28881AAC TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_479894
 2020-03-16 2020-07-01
 Japan hCoV-19/Japan/PG-0189/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G G25563C GGG28881AAC TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_479895
 2020-03-16 2020-07-01
 Japan hCoV-19/Japan/PG-0190/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C313T C3037T C8139T C14408T A23403G GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_479898
 2020-03-16 2020-07-01
 Japan hCoV-19/Japan/PG-0193/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T C10833T G13379A C14408T C18877T A23403G G25563T C25585T C26735T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_479899
 2020-03-16 2020-07-01
 Japan hCoV-19/Japan/PG-0194/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACT1- C241T C3037T C10833T C14408T C16173T C18877T A23403G G25563T C26735T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_479900
 2020-03-16 2020-07-01
 Japan hCoV-19/Japan/PG-0195/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C3037T C10833T C14408T C18877T A23403G G25563T C26735T TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_479933
 2020-03-16 2020-07-01
 Japan hCoV-19/Japan/PG-0243/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T G2164A C3037T C14408T A23403G G28514T GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_479937
 2020-03-16 2020-07-01
 Japan hCoV-19/Japan/PG-0252/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C3037T C14408T A23403G C28093T TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_480227
 2020-03-16 2020-07-01
 Japan hCoV-19/Japan/PG-0186/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T G16381A T17877C AGTT27620- T28144C G28878A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480381 MT772548
 2020-03-16 2020-07-01
 United States SARS-CoV-2/human/USA/WI-UW-399/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A3046G C8782T A16467G C17747T A17858G C18060T C23185T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480382 MT772549
 2020-03-16 2020-07-01
 United States SARS-CoV-2/human/USA/WI-UW-400/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1912T A2501G A18153G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481004
 2020-03-16 2020-07-02
 Spain hCoV-19/Spain/Donostia-San_Sebastian_COV003260/2020
 C241T C3037T G4255T C6696T C14408T A20268G A23403G

EPI_ISL_481569
 2020-03-16 2020-07-03
 Finland hCoV-19/Finland/16M18/2020
 C241T C3037T C9803T C14408T A23403G C25728T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_482470
 2020-03-16 2020-07-03
 Canada hCoV-19/Canada/NS_42/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G701T C1059T C3037T C14408T A23403G G25563T ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_482478
 2020-03-16 2020-07-03
 Canada hCoV-19/Canada/MB_71/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A G28851T ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_482481
 2020-03-16 2020-07-03
 Canada hCoV-19/Canada/MB_76/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C1616T C3037T C14408T A23403G ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_482482
 2020-03-16 2020-07-03
 Canada hCoV-19/Canada/MB_78/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_483059
 2020-03-16 2020-07-07
 Spain hCoV-19/Spain/IrsiCaixa-Own160320/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTT1- C241T C3037T C14408T A20268G T20644C A23403G GCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29742-

EPI_ISL_483931
 2020-03-16 2020-07-08
 United Kingdom hCoV-19/England/GSTT-265D25D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484339
 2020-03-16 2020-07-08
 United Kingdom hCoV-19/England/NOTT-10DE9F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T C2940T G11083T C14805T G26144T C29525T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_486431
 2020-03-16 2020-07-10
 Latvia hCoV-19/Latvia/047/2020
 C241T C3037T G11083T T11638C C14408T C18312T A23403G GGG28881AAC C29708T

EPI_ISL_486432
 2020-03-16 2020-07-10
 Latvia hCoV-19/Latvia/048/2020
 C241T C1059T C3037T C14408T A20755C A23403G G25563T

EPI_ISL_486433
 2020-03-16 2020-07-10
 Latvia hCoV-19/Latvia/049/2020
 C241T C3037T C14408T C14786T A23403G GGG28881AAC

EPI_ISL_486434
 2020-03-16 2020-07-10
 Latvia hCoV-19/Latvia/050/2020
 C241T C3037T C8814T C14408T C14786T A23403G GGG28881AAC

EPI_ISL_488485
 2020-03-16 2020-07-14
 United Kingdom hCoV-19/England/NORT-284275/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T T25202K G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488750
 2020-03-16 2020-07-14
 United Kingdom hCoV-19/England/NORT-2814EB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C874T C2416T C3037T C14408T G16245A C19524T A23403G G25563T G26233T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488767
 2020-03-16 2020-07-14
 United Kingdom hCoV-19/England/NORT-2814AF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488772
 2020-03-16 2020-07-14
 United Kingdom hCoV-19/England/NORT-281445/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488785
 2020-03-16 2020-07-14
 United Kingdom hCoV-19/England/NORT-2814DC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G11083T C13119T C14805T G21372T A23403G G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491000
 2020-03-16 2020-07-15
 United States hCoV-19/USA/MN-UW-MAYO71/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C36T C241T C1059T C3037T C9661T C14408T A21845G A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_491449
 2020-03-16 2020-07-17
 Costa Rica hCoV-19/Costa Rica/INC-0038/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C44G A46T CT48TG C241T C3037T C6696T C14408T A20268G A23403G A29886T AA29888GC AAA29891TTC A29897C AAAAA29899-

EPI_ISL_492536
 2020-03-16 2020-07-20
 United Kingdom hCoV-19/England/BRIS-130BC9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C25350T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492544
 2020-03-16 2020-07-20
 United Kingdom hCoV-19/England/BRIS-130B50/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A C10507T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492659
 2020-03-16 2020-07-20
 United Kingdom hCoV-19/England/BRIS-130BD8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T C2706T A7025G C9724T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493198
 2020-03-16 2020-07-21
 Taiwan hCoV-19/Taiwan/NCKUH-002/2020
 ATTAAAGGTTT1- G11083T C11704T C14805T T17247C C24579T G26144T A29884C AA29887GC A29890G -29892TGGTAAATGATTTCCCAGGGCTCTGTGTATATCTCCT A29895G A29897G -29901CCTATAGGAATGCTCAGCCTCATCCCTGGCAGCGGCTCTCCCCAGCGCC -29904GGGTGAGATCTG

EPI_ISL_493741
 2020-03-16 2020-07-21
 United Kingdom hCoV-19/Scotland/CVR111/2020
 ATTAAAGGTTTATACCTTCCCA1- C4540T C8782T T9477A C14805T C25714T G25979T C26029A T28144C C28657T C28863T AAAAAA29898-

EPI_ISL_494592
 2020-03-16 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1419/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T C1059T C1887T C3037T C14408T A23403G G25563T

EPI_ISL_497845
 2020-03-16 2020-07-25
 China hCoV-19/Hong Kong/HKU-200723-078/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498030
 2020-03-16 2020-07-26
 South Korea hCoV-19/Korea/KCDC2129/2020
 ATTAAAGGTT1- A2480G C2558T G11083T C14805T G26144T AA29902-

EPI_ISL_498031
 2020-03-16 2020-07-26
 South Korea hCoV-19/Korea/KCDC2130/2020
 ATTAA1- C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_498036
 2020-03-16 2020-07-26
 South Korea hCoV-19/Korea/KCDC2135/2020
 ATTAAAGG1- G5572T G11083T G13564T C14805T G15708T G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_499460
 2020-03-16 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A6822/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C9746T C14408T A23403G TTTTAAAGTTTCCATTTGGAATCTTGA27264-

EPI_ISL_499467
 2020-03-16 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A67BC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- ATG1605- G18315A

EPI_ISL_499728
 2020-03-16 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A6673/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T T22031K A23403G C27323T GGG28881AAC

EPI_ISL_499734
 2020-03-16 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A66FB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G GGG28881AAC C29870A

EPI_ISL_499751
 2020-03-16 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A68AA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A1515G C9223T G11083T C14805T T17247C G26144T C29114A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_499757
 2020-03-16 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A695C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_499760
 2020-03-16 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A69C5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A20268G A23403G

EPI_ISL_499761
 2020-03-16 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A69D4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G10097A C14408T T18573A T22573C A23403G C23731T GGG28881AAC

EPI_ISL_499762
 2020-03-16 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A69E3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G1440A G2891R C4668T G7312R C26447T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_499763
 2020-03-16 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A69F2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G284T A2480G C2558T A4595M G11083T G12824A C14805T G26144T C29870A

EPI_ISL_499767
 2020-03-16 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A6A59/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A20268G A23403G C29870A

EPI_ISL_499768
 2020-03-16 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A6A77/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T C3037T C14267Y C14408T T23284C A23403G G25563T C29870A

EPI_ISL_499771
 2020-03-16 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A6AE0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A20268G A23403G C29870A

EPI_ISL_499772
 2020-03-16 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A6AFF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_500516
 2020-03-16 2020-07-29
 United States hCoV-19/USA/MN-UW-MAYO72/2020
 ATTAAAGGTTTAT1- A14T CCCAGGTAACAAACCAA19- C36T C3784T C8782T C17747T A17858G C18060T T28144C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_500520
 2020-03-16 2020-07-29
 United States hCoV-19/USA/LA-UW-MAYO86/2020
 T2- C36T C241T C1059T C3037T C10319T C14408T C17676T A23403G G25563T C27964T AAAAAAAAAAAAAAAAA29887-

EPI_ISL_500629
 2020-03-16 2020-07-29
 Australia hCoV-19/Australia/NSW2148/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G578A C8782T C17747T A17858G C18060T A24694T T28144C CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500630
 2020-03-16 2020-07-29
 Australia hCoV-19/Australia/NSW2149/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C19170T G19509A A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500631
 2020-03-16 2020-07-29
 Australia hCoV-19/Australia/NSW2151/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G26144T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_507023 MT820474
 2020-03-16 2020-07-30
 Saudi Arabia SARS-CoV-2/human/SAU/KAIMRC18/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1973T C3037T C14408T G19276A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_508130
 2020-03-16 2020-08-04
 Australia hCoV-19/Australia/SAP439/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C6312A G11083T C13730T C23929T C28311T

EPI_ISL_508869
 2020-03-16 2020-08-04
 Switzerland hCoV-19/Switzerland/1000484569/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T C15324T A23403G GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_508879
 2020-03-16 2020-08-04
 France hCoV-19/France/ARA10160/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTG1- C241T C3037T C14408T C15324T A23403G C25433T C29546T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_508880
 2020-03-16 2020-08-04
 France hCoV-19/France/ARA10175/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C14408T C15324T A23403G C25433T C29546T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_508881
 2020-03-16 2020-08-04
 France hCoV-19/France/ARA10242/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C14408T C15324T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_509003
 2020-03-16 2020-08-04
 France hCoV-19/France/ARA9584/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C1059T C3037T G11083T C14408T A23403G G25563T C27213T G28346T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_509004
 2020-03-16 2020-08-04
 France hCoV-19/France/ARA9476/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- A2480G C2558T G11083T C14805T G24095T G25287T G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_509616
 2020-03-16 2020-08-05
 Spain hCoV-19/Spain/COV001537/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C8782T T9477A T10455G G11944R C14805T G25979T T28144C C28291T C28657T C28863T C29870A

EPI_ISL_509625
 2020-03-16 2020-08-05
 Spain hCoV-19/Spain/COV001995/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C8782T T9477A C11674T C14805T G25979T G27112A T28144C C28657T C28863T G29402T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_509626
 2020-03-16 2020-08-05
 Spain hCoV-19/Spain/COV001996/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G2418A C10369Y G11083T A16815R G26144T T27991C TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_509627
 2020-03-16 2020-08-05
 Spain hCoV-19/Spain/COV002016/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C8782T T9477A G11083K C11674Y C14805T G25979T G27112A T28144C C28657T C28863T G29402T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_509628
 2020-03-16 2020-08-05
 Spain hCoV-19/Spain/COV002017/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A20268G A23403G CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_509629
 2020-03-16 2020-08-05
 Spain hCoV-19/Spain/COV002019/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- A3672C C8782T T9477A C14805T G25979T T28144C C28657T C28863T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_509630
 2020-03-16 2020-08-05
 Spain hCoV-19/Spain/COV002020/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A20268G A23403G CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_509631
 2020-03-16 2020-08-05
 Spain hCoV-19/Spain/COV002023/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C8782T T9477A C11674Y C14805T T19503C G25979T T28144C C28657T C28863T G29402T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_510248
 2020-03-16 2020-08-06
 Spain hCoV-19/Spain/COV003151/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G5230T C14408T A20268G A23403G CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_510251
 2020-03-16 2020-08-06
 Spain hCoV-19/Spain/COV003154/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C9661Y C14408T A20268G C22088T A23403G A29086T ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_510252
 2020-03-16 2020-08-06
 Spain hCoV-19/Spain/COV003155/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C14408T A20268G A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_510253
 2020-03-16 2020-08-06
 Spain hCoV-19/Spain/COV003156/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C8782T T9477A C12513T C14805T T23590A A25765T G25979T C26681T T28144C C28657T C28863T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_510256
 2020-03-16 2020-08-06
 Spain hCoV-19/Spain/COV003160/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C14408T A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_510257
 2020-03-16 2020-08-06
 Spain hCoV-19/Spain/COV003161/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C14408T A23403G GGG28881AAC TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_510259
 2020-03-16 2020-08-06
 Spain hCoV-19/Spain/COV003163/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C14408T A20268G A23403G GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_510260
 2020-03-16 2020-08-06
 Spain hCoV-19/Spain/COV003164/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C1059T C3037T A10761G C14408T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_510263
 2020-03-16 2020-08-06
 Spain hCoV-19/Spain/COV003167/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C2592T C3037T G5230T C14408T A20268G A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_510529 MT790522
 2020-03-16 2020-07-22
 Zambia SARS-CoV-2/human/ZMB/29/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T C3037T C3796T T11725C C14408T A23403G GGG28881AAC TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_511037
 2020-03-16 2020-08-07
 Portugal hCoV-19/Portugal/PT0778/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C7869T G11083T G26144T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511042
 2020-03-16 2020-08-07
 Portugal hCoV-19/Portugal/PT0783/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G T27299C GGG28881AAC T29148C TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511043
 2020-03-16 2020-08-07
 Portugal hCoV-19/Portugal/PT0784/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G T27299C GGG28881AAC T29148C TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511211
 2020-03-16 2020-08-07
 Portugal hCoV-19/Portugal/PT1250/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511385
 2020-03-16 2020-08-07
 Portugal hCoV-19/Portugal/PT1426/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3140T C14408T A23403G G24077T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511389
 2020-03-16 2020-08-07
 Portugal hCoV-19/Portugal/PT1430/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3924T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511426
 2020-03-16 2020-08-07
 Portugal hCoV-19/Portugal/PT1467/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C12253T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511427
 2020-03-16 2020-08-07
 Portugal hCoV-19/Portugal/PT1468/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C12253T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511459
 2020-03-16 2020-08-07
 Portugal hCoV-19/Portugal/PT1500/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C2416T C3037T C14408T C21575T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511462
 2020-03-16 2020-08-07
 Portugal hCoV-19/Portugal/PT1503/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511642
 2020-03-16 2020-08-08
 Portugal hCoV-19/Portugal/PT1095/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T C16376T A20268G A23403G C29304T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511643
 2020-03-16 2020-08-08
 Portugal hCoV-19/Portugal/PT1096/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- G11083T G26144T C26873T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511645
 2020-03-16 2020-08-08
 Portugal hCoV-19/Portugal/PT1098/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G A28779G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511894
 2020-03-16 2020-08-10
 Vietnam hCoV-19/Vietnam/VNHN_0897/2020
 ATTAAAGGTTTATACC1- T25G A29T C241T C3037T C14408T A23403G C26256T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_511895
 2020-03-16 2020-08-10
 Vietnam hCoV-19/Vietnam/VNHN_0899/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T T9172C A10948G C14408T C14793T A23403G G26730T GGG28881AAC G29262T TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_513437 MT886311
 2020-03-16 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0025/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAA1- C241T C1059T C3037T C12809T C14408T A23403G G25563T C26625T AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513439 MT886313
 2020-03-16 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0027/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAA1- C241T C2416T C3037T G4510T C14408T A23403G G25563T AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513440 MT886314
 2020-03-16 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0028/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAA1- C241T C2416T C3037T G11534A C14408T A23403G G25563T G26233T AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513442 MT886316
 2020-03-16 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0030/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAA1- T490A C3177T C4543T G4720T C8782T T18736C G19684T C24034T C26681T T26729C C27635T G28077C T28144C A29700G AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513447 MT886321
 2020-03-16 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0035/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAA1- C241T C1059T C3037T C14408T A23403G G25563T AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513448 MT886322
 2020-03-16 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0036/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATT1- C241T C3037T C14408T C22450T A23403G AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513449 MT886323
 2020-03-16 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0037/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTG1- C241T C3037T C14408T C22450T A23403G AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513450 MT886324
 2020-03-16 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0038/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCA1- C241T C3037T C14408T C22450T A23403G C28087T AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513451 MT886325
 2020-03-16 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0039/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAA1- C241T C3037T C14408T C22450T A23403G GTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29825-

EPI_ISL_513453 MT886327
 2020-03-16 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0041/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAA1- C241T C3037T C14408T C18877T A23403G G25563T AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513455 MT886329
 2020-03-16 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0043/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAA1- C241T C1059T C3037T C12809T C14408T A23403G G25563T C26625T A29700G AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513456 MT886330
 2020-03-16 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0044/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAA1- C241T C1059T C3037T C14408T A23403G G25563T AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513463 MT886337
 2020-03-16 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0052/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAA1- A5317G C8782T C17747T A17858G C18060T G19086T A19476G T28144C AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513466 MT886340
 2020-03-16 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0055/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCT1- C241T C3037T C14408T C22450T A23403G AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513467 MT886341
 2020-03-16 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0056/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAA1- A5317G C8782T C17747T A17858G C18060T G19086T A19476G T28144C AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513470 MT886344
 2020-03-16 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0059/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAA1- G1440A G2891A C7011T G25593C AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513511
 2020-03-16 2020-08-13
 Czech Republic hCoV-19/Czech Republic/NRL_2676/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_514637 MT892984
 2020-03-16 2020-08-17
 United States SARS-CoV-2/human/USA/MN-MDH-1418/2020
 ATT1- T490A C3177T C8782T C10228T T18736C C24034T T26729C C27635T G28077C T28144C A29700G GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_515307
 2020-03-16 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0020/2020
 ATT1- C241T C379A C1059T C3037T CC14407TT A23403G G25563T

EPI_ISL_516863
 2020-03-16 2020-08-24
 United Kingdom hCoV-19/England/LOND-126090E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T1368C C6990T G11083T C14805T C23707T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516987
 2020-03-16 2020-08-24
 Peru hCoV-19/Peru/INS-066/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAA1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_518874 MT920013
 2020-03-16 2020-08-25
 United States SARS-CoV-2/human/USA/MN-MDH-1480/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C775T C1059T C3037T C5183T C14408T A23403G G25563T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_518880 MT920020
 2020-03-16 2020-08-25
 United States SARS-CoV-2/human/USA/MN-MDH-1487/2020
 ATTA1- C8782T C17747T A17858G C18060T A24694T T28144C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_523525
 2020-03-16 2020-08-26
 Netherlands hCoV-19/Netherlands/un-EMC-769/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C20148T A23403G G29422T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523954
 2020-03-16 2020-08-27
 Peru hCoV-19/Peru/LAM-INS-071/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACA1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC AGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29714-

EPI_ISL_524653
 2020-03-16 2020-08-28
 United Kingdom hCoV-19/England/LOND-126041C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C14408T C14786T G20578T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524658
 2020-03-16 2020-08-28
 United Kingdom hCoV-19/England/LOND-126042B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G24368T G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525539
 2020-03-16 2020-08-31
 France hCoV-19/France/ARA10259/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C22088T C23127T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525553
 2020-03-16 2020-08-31
 Italy hCoV-19/Italy/APU-UniMI-102/2020
 ATT1- C241T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_525556
 2020-03-16 2020-08-31
 Italy hCoV-19/Italy/APU-UniMI-22/2020
 A1CCACCGA C241T C3037T G5515T T8729G C14408T A23403G A26530G G27204T TAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29823-

EPI_ISL_525570
 2020-03-16 2020-08-31
 Italy hCoV-19/Italy/APU-UniMI-6/2020
 A1GGACCGGA C241T C3037T C14408T T16926C A23403G GGG28881AAC AA29881TG AAAAAAAAAAAAAAAAAAAA29884C

EPI_ISL_525615
 2020-03-16 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-17364-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_525616
 2020-03-16 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-17549-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C1917T C3037T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_525619
 2020-03-16 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-19679-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_525622
 2020-03-16 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-22513-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T T1303C C3037T G10265A C14408T A23403G GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_526946
 2020-03-16 2020-09-02
 Denmark hCoV-19/Faroe Islands/HFS-43/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1302T C3037T C14408T C16806T A23403G G25563T AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_528125
 2020-03-16 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42192108/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528127
 2020-03-16 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42192489/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T C15324T G22487C A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528128
 2020-03-16 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42192492/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T A20268G A23403G C25658T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_528129
 2020-03-16 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42192764/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C313T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_528131
 2020-03-16 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42192855/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T C15324T A23403G TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_528132
 2020-03-16 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42192872/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_528133
 2020-03-16 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42192884/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- A187G C241T C3037T C14408T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528135
 2020-03-16 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42192918/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T G2944A C3037T C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528137
 2020-03-16 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42192943/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGAT1- C241T C3037T G12070T C14408T C15324T A23403G ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_528138
 2020-03-16 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42192965/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T G18106T C21110T A23403G ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_528139
 2020-03-16 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42192973/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T C15324T A23403G ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_528140
 2020-03-16 2020-09-06
 Switzerland hCoV-19/Switzerland/Waadt-UHB-42192980/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C12676T C14408T C15324T G22035A A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528141
 2020-03-16 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42193014/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T C15324T A23403G TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_528142
 2020-03-16 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42193056/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T A20268G A23403G C28854T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528143
 2020-03-16 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42193080/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T C15324T A23403G ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_528146
 2020-03-16 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42193250/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C313T C3037T C14408T A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528147
 2020-03-16 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42193254/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C313T C3037T C14408T A23403G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_528148
 2020-03-16 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42193283/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528149
 2020-03-16 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42193328/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G C25207T G26153C ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_528151
 2020-03-16 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42193780/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C313T C3037T C14408T A23403G GGG28881AAC C29627T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528154
 2020-03-16 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42194077/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C643T C3037T C3787T C14408T C15324T A23403G T27206C AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528155
 2020-03-16 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42194080/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C643T C3037T C3787T C14408T C15324T A23403G T27206C ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_528157
 2020-03-16 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42194287/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T G15982T A23403G TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_528158
 2020-03-16 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42194288/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T G15982T A23403G TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_528637
 2020-03-16 2020-09-08
 Brazil hCoV-19/Brazil/RJ-MD63-1a/2020
 ATTAAAGGTTTA1- C241T C3037T C14408T T21765A A21958G A23403G T27299C GGG28881AAC T29148C AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_528638
 2020-03-16 2020-09-08
 Brazil hCoV-19/Brazil/RJ-MD63-1b/2020
 ATTAAAGGTTTA1- C241T C3037T C14408T A23403G T27299C GGG28881AAC T29148C AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_529962
 2020-03-16 2020-09-10
 Indonesia hCoV-19/Indonesia/JI-ITD-150Sp/2020
 ATTAAAGGTTTAT1-

EPI_ISL_530037
 2020-03-16 2020-09-10
 Spain hCoV-19/Spain/MD-LP108/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_535809
 2020-03-16 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00221605/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1186A C2416T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535813
 2020-03-16 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00222020/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C11916T C14408T G21641T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535815
 2020-03-16 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00222035/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C3037T C11916T C14408T G15910K G21641T A23403G G25563T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_535818
 2020-03-16 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00222731/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535819
 2020-03-16 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00222823/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C2070T C6312A C8326T G11083T C13730T C23929T C26807T C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535829
 2020-03-16 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00225185/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T11611C C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535838
 2020-03-16 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00225808/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15222T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536537
 2020-03-16 2020-09-16
 Peru hCoV-19/Peru/LIM-INS-142/2020
 ATTAAAG1- C8782T C17747T A17858G C18060T A24694T T28144C A29891T

EPI_ISL_536538
 2020-03-16 2020-09-16
 Peru hCoV-19/Peru/LIM-INS-143/2020
 ATTAAAG1- C241T C1179T C3037T C4002T G10097A C13536T C14408T G15285T A23403G C23731T GGG28881AAC

EPI_ISL_537586
 2020-03-16 2020-09-16
 United States hCoV-19/USA/CA-UCLA-60/2020
 ATTAAAGGTTTATACCTTCC1- G2305T G11083T G11108T C14805T A15779C T17247C G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_538050
 2020-03-16 2020-09-16
 Spain hCoV-19/Spain/VC-CSIC-98003114/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G4105T C14408T A20268G A23403G TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_538051
 2020-03-16 2020-09-16
 Spain hCoV-19/Spain/VC-CSIC-98003115/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C1059T C3037T C14408T A23403G G25062T G25563T GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_538052
 2020-03-16 2020-09-16
 Spain hCoV-19/Spain/VC-CSIC-98003116/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T G1882T C3037T C14408T A23403G C29144T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_538054
 2020-03-16 2020-09-16
 Spain hCoV-19/Spain/VC-CSIC-98003118/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C14408T A20268G A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_538437
 2020-03-16 2020-09-17
 Singapore hCoV-19/Singapore/46nan/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G15349C C20031A A23403G C27046T GGG28881AAC G29392T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538438
 2020-03-16 2020-09-17
 Singapore hCoV-19/Singapore/914/2020
 CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_538447
 2020-03-16 2020-09-17
 Singapore hCoV-19/Singapore/148nan/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G252T C3037T C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539521
 2020-03-16 2020-09-18
 Spain hCoV-19/Spain/CE-ISCIII-203352/2020
 C1342T A1830G G11083T C14805T TGT22643ACA T22655C TCT22658CTG G26144T

EPI_ISL_541342
 2020-03-16 2020-09-22
 Brazil hCoV-19/Brazil/PR-5619/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T G4201T C4320T C14408T G18973K A23403G C26527T GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_547464
 2020-03-16 2020-09-24
 Netherlands hCoV-19/Netherlands/GE-RIVM-10112/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C906T C1594T C3037T G5425T C11109T C14408T A23403G G25563T C29370T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547503
 2020-03-16 2020-09-24
 Netherlands hCoV-19/Netherlands/NH-RIVM-10108/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A C7011T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547504
 2020-03-16 2020-09-24
 Netherlands hCoV-19/Netherlands/NH-RIVM-10109/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C3037T C4189T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547529
 2020-03-16 2020-09-24
 Netherlands hCoV-19/Netherlands/UT-RIVM-10107/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G2086T C7528T C8782T G16381A T28144C G28878A G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_548356
 2020-03-16 2020-09-26
 United States hCoV-19/USA/CA-CZB-3637/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T C3037T C3874Y C14408T C21304T A23403G G25563T C27964T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_566028
 2020-03-16 2020-09-30
 United States hCoV-19/USA/MI-MDHHS-SC21978/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAA29889-

EPI_ISL_568920
 2020-03-16 2020-10-02
 France hCoV-19/France/IHU-0662/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1059T C3037T C14408T A23403G G25563T C26873T G29711C TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_568922
 2020-03-16 2020-10-02
 France hCoV-19/France/IHU-0670/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C541T C1059T C3037T G10835A G11083T C14408T A23403G G25563T C29670T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569338
 2020-03-16 2020-10-02
 France hCoV-19/France/IHU-0152/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C541T C1059T C3037T G11083T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

MT374112
 2020-03-16 2020-04-22
 Taiwan SARS-CoV-2/human/TWN/CGMH-CGU-16/2020
 AT1- C241T C3037T C14408T C17004T C18877T G21204T A23403G G25563T G25767T

MT415322
 2020-03-16 2020-04-30
 India SARS-CoV-2/human/IND/GMCKN443/2020
 ATTAAAGGTTT1- C1707Y C6312A G11083T C13730T C19524Y C23929T C28311T G29868R C29870A

MT459859
 2020-03-16 2020-05-11
 Greece SARS-CoV-2/human/GRC/143_34652/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

MT459860
 2020-03-16 2020-05-11
 Greece SARS-CoV-2/human/GRC/144_34723/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- G11083T C14805T T17247C G26144T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

MT459869
 2020-03-16 2020-05-11
 Greece SARS-CoV-2/human/GRC/156_34721/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

MT477836
 2020-03-16 2020-05-14
 United States SARS-CoV-2/human/USA/AK006/2020
 ATTAAAGGTTTATACCTTCCC1- C241T C3037T C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT509488
 2020-03-16 2020-05-22
 United States SARS-CoV-2/human/USA/MD-HP00033/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G10523C C12119T C14408T C18086A A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706134
 2020-03-16 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-12/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706136
 2020-03-16 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-14/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G G25563T G28871A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706137
 2020-03-16 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-15/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C7945T C8782T C17747T A17858G C18060T A24694T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706141
 2020-03-16 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-19/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706142
 2020-03-16 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-21/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G G25563T G28871A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706291
 2020-03-16 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-163/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706292
 2020-03-16 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-164/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C14408T G19101T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706376
 2020-03-16 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-249/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C8016T C14408T T15366C A23403G G25563T G28903T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT810500
 2020-03-16 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1419-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C1887T C3037T C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810577
 2020-03-16 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0455-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C8782T C17747T A17858G C18060T A24694T T28144C CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT907515
 2020-03-16 2020-08-20
 Venezuela SARS-CoV-2/human/VEN/1Z/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCT1- T1116C C8782T T9477A C14805T A15498G G23516A G23724T G25979T T28144C C28657T C28863T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

MW008567
 2020-03-16 2020-09-15
 United States SARS-CoV-2/human/USA/GA-EHC-037K/2020
 ATTAAA1- T490A C3177T C8782T T18736C C24034T T26729C G28077C T28144C A29700G AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

MW008570
 2020-03-16 2020-09-15
 United States SARS-CoV-2/human/USA/GA-EHC-041O/2020
 ATTAAA1- C241T C1059T C3037T C14408T A23403G G25563T C27964T AAAAAAAAAAA29893-

MW008571
 2020-03-16 2020-09-15
 United States SARS-CoV-2/human/USA/GA-EHC-042P/2020
 ATTAAA1- T490A C3177T C8782T T18736C C24034T C25844T T26729C G28077C T28144C A29700G AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

MW030206
 2020-03-16 2020-09-22
 Peru SARS-CoV-2/human/PER/covper066/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTC1- C8782T C17747T A17858G C18060T A24694T T28144C C29675- ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

MW030207
 2020-03-16 2020-09-22
 Peru SARS-CoV-2/human/PER/covper067/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGT1- C241T C1179T C3037T C4002T G10097A C13536T C14408T G15285T A23403G C23731T GGG28881AAC C29675- ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

MW047016
 2020-03-16 2020-09-29
 United States SARS-CoV-2/human/USA/GA-EHC-033G/2020
 ATTAAA1- T490A C3177T T3478A C3602T C8782T T18736C C21811T C24034T T26729C C27635T G28077C T28144C A29700G C29739T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

MW047017
 2020-03-16 2020-09-29
 United States SARS-CoV-2/human/USA/GA-EHC-049W/2020
 ATTAAAGGTTTATA1- C241T C1059T G2914A C3037T C14408T C16260T A23403G G25563T C28821A GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_415464 LR878343
 2020-03-17 2020-03-17
 Netherlands hCoV-19/Netherlands/Limburg_7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- G1440A G2891A GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415499 LR878073
 2020-03-17 2020-03-17
 Netherlands hCoV-19/Netherlands/NoordBrabant_41/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C1594T C3037T C11109T C14408T A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415507 LR878076
 2020-03-17 2020-03-17
 Netherlands hCoV-19/Netherlands/NoordBrabant_51/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- T514C ATG1605- GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415509 LR878088
 2020-03-17 2020-03-17
 Netherlands hCoV-19/Netherlands/NoordBrabant_53/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- T514C ATG1605- G2323T C17410T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415517 LR878105
 2020-03-17 2020-03-17
 Netherlands hCoV-19/Netherlands/NoordBrabant_61/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- T514C ATG1605- C16762T C16996T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415518 LR878101
 2020-03-17 2020-03-17
 Netherlands hCoV-19/Netherlands/NoordBrabant_62/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T C14408T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415519 LR878093
 2020-03-17 2020-03-17
 Netherlands hCoV-19/Netherlands/NoordBrabant_63/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- T514C ATG1605- C16762T C16996T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415520 LR878104
 2020-03-17 2020-03-17
 Netherlands hCoV-19/Netherlands/NoordBrabant_64/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T C14408T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415521 LR878106
 2020-03-17 2020-03-17
 Netherlands hCoV-19/Netherlands/NoordBrabant_65/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- T514C ATG1605- C6255T C17410T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415523 LR878107
 2020-03-17 2020-03-17
 Netherlands hCoV-19/Netherlands/NoordBrabant_67/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_416426
 2020-03-17 2020-03-21
 Hungary hCoV-19/Hungary/mbl1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G G25483A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417408
 2020-03-17 2020-03-25
 Australia hCoV-19/Australia/NSW56/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- A1515G C9223T G11083T C14805T T17247C A17799G C23987T G26144T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_417411
 2020-03-17 2020-03-25
 Australia hCoV-19/Australia/NSW61/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C2416T C3037T C14408T C21595T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_417412
 2020-03-17 2020-03-25
 Australia hCoV-19/Australia/NSW62/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- G1440A G2891A C7011T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_417413
 2020-03-17 2020-03-25
 Turkey hCoV-19/Turkey/6224-Ankara1034/2020
 C100A T580A G779C T946A TC1100GT A1106T A1119C A1134T G1156A G1210A C1225A T1359C G1397A C1420T G1470A C1473T A1475C G2250A C2455T A2475T G2549C T2586A G2591A G2612C G2715T A2932G C3117T G3146C C3787T C4084T C7392T T10532A C11232T G11234A C13476T C13492T C14286T G14310A T14394A C14407A G14430A G14443T T14682G G14710A T14740C C14763A G14773T T14808A C15101A T15119A G15958A C19763A T26396A T26551C C26753T C27103T G28109T T28688C G29742T

EPI_ISL_417437
 2020-03-17 2020-03-25
 Democratic Republic of the Congo hCoV-19/DRC/KN-0054/2020
 A1- C241T C3037T C14408T C15324T G15444T A23403G G28202A

EPI_ISL_417507
 2020-03-17 2020-03-27
 United States hCoV-19/USA/WI-UW-23/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17747T A17858G C18060T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417515
 2020-03-17 2020-03-27
 United States hCoV-19/USA/WI-UW-18/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3871T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417538
 2020-03-17 2020-03-27
 Iceland hCoV-19/Iceland/104/2020
 C241T C3037T G10097A T13216G C14408T T20923C A23403G C23731T GGG28881AAC

EPI_ISL_417540
 2020-03-17 2020-03-27
 Iceland hCoV-19/Iceland/115/2020
 T3034C G11083T C14805T C16054T T17247C T17859C G26144T G29751C

EPI_ISL_417541
 2020-03-17 2020-03-27
 Iceland hCoV-19/Iceland/116/2020
 T3034C G11083T C14805T C16054T T17247C T17859C G26144T G29751C

EPI_ISL_417542
 2020-03-17 2020-03-27
 Iceland hCoV-19/Iceland/117/2020
 C241T C3037T A10323G C14408T A20268G A23403G

EPI_ISL_417543
 2020-03-17 2020-03-27
 Iceland hCoV-19/Iceland/118/2020
 C241T C3037T A10323G C14408T A20268G A23403G

EPI_ISL_417544
 2020-03-17 2020-03-27
 Iceland hCoV-19/Iceland/119/2020
 C5142T C10641T G11083T C14805T T17247C G26144T

EPI_ISL_417545
 2020-03-17 2020-03-27
 Iceland hCoV-19/Iceland/120/2020
 T3034C G11083T C14805T C16054T T17247C T17859C G26144T G29751C

EPI_ISL_417548
 2020-03-17 2020-03-27
 Iceland hCoV-19/Iceland/170/2020
 C5142T G11083T C14805T T17247C G26144T

EPI_ISL_417555
 2020-03-17 2020-03-27
 Iceland hCoV-19/Iceland/227/2020
 C186T C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_417556
 2020-03-17 2020-03-27
 Iceland hCoV-19/Iceland/228/2020
 G102A C241T C3037T T3793C C14408T A16311G A23403G C23575T C28519T G29513T

EPI_ISL_417557
 2020-03-17 2020-03-27
 Iceland hCoV-19/Iceland/229/2020
 C5142T G11083T C14805T T17247C G26144T

EPI_ISL_417558
 2020-03-17 2020-03-27
 Iceland hCoV-19/Iceland/230/2020
 C5142T G11083T C14805T T17247C G26144T

EPI_ISL_417560
 2020-03-17 2020-03-27
 Iceland hCoV-19/Iceland/232/2020
 C241T C3037T C14408T A23403G A26530G G29706T

EPI_ISL_417561
 2020-03-17 2020-03-27
 Iceland hCoV-19/Iceland/233/2020
 C241T C313T C3037T C14408T C20178T A23403G GGG28881AAC

EPI_ISL_417562
 2020-03-17 2020-03-27
 Iceland hCoV-19/Iceland/234/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_417564
 2020-03-17 2020-03-27
 Iceland hCoV-19/Iceland/236/2020
 C241T C3037T A8072G C14408T A23403G GGG28881AAC

EPI_ISL_417565
 2020-03-17 2020-03-27
 Iceland hCoV-19/Iceland/237/2020
 C241T C2455T C3037T C10450T C14408T A23403G

EPI_ISL_417566
 2020-03-17 2020-03-27
 Iceland hCoV-19/Iceland/238/2020
 C241T C3037T C14408T A23403G C24054T A25958G C27046T GGG28881AAC

EPI_ISL_417567
 2020-03-17 2020-03-27
 Iceland hCoV-19/Iceland/239/2020
 C241T C3037T C14408T A23403G G27430A GGG28881AAC

EPI_ISL_417568
 2020-03-17 2020-03-27
 Iceland hCoV-19/Iceland/240/2020
 C5142T G11083T C14805T T17247C G26144T

EPI_ISL_417569
 2020-03-17 2020-03-27
 Iceland hCoV-19/Iceland/241/2020
 A187G C241T C3037T C14408T A23403G

EPI_ISL_417570
 2020-03-17 2020-03-27
 Iceland hCoV-19/Iceland/242/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_417571
 2020-03-17 2020-03-27
 Iceland hCoV-19/Iceland/243/2020
 C241T C3037T C14408T A23403G G25249T C26461T C27046T GGG28881AAC

EPI_ISL_417572
 2020-03-17 2020-03-27
 Iceland hCoV-19/Iceland/244/2020
 C241T C3037T C11322T C14408T A23403G

EPI_ISL_417574
 2020-03-17 2020-03-27
 Iceland hCoV-19/Iceland/246/2020
 A1515G C9223T G11083T C14805T T17247C G26144T

EPI_ISL_417575
 2020-03-17 2020-03-27
 Iceland hCoV-19/Iceland/247/2020
 C241T C3037T C14408T A23403G G25249T C26461T C27046T GGG28881AAC

EPI_ISL_417576
 2020-03-17 2020-03-27
 Iceland hCoV-19/Iceland/248/2020
 C1218T C5696T G27806T G29711T

EPI_ISL_417577
 2020-03-17 2020-03-27
 Iceland hCoV-19/Iceland/249/2020
 C8782T T9445C C17430T T17531C C17747T A17858G C18060T G18756T A24694T T28144C

EPI_ISL_417580
 2020-03-17 2020-03-27
 Iceland hCoV-19/Iceland/252/2020
 A1321C G11083T C14805T T17247C G26144T

EPI_ISL_417581
 2020-03-17 2020-03-27
 Iceland hCoV-19/Iceland/253/2020
 C241T C3037T C4002T G10097A C13536T C14408T C19718T A23403G C23731T GGG28881AAC

EPI_ISL_417582
 2020-03-17 2020-03-27
 Iceland hCoV-19/Iceland/254/2020
 C241T C3037T C14408T A23403G A24862G

EPI_ISL_417583
 2020-03-17 2020-03-27
 Iceland hCoV-19/Iceland/255/2020
 C241T C3037T A10323G C14408T A20268G A23403G

EPI_ISL_417584
 2020-03-17 2020-03-27
 Iceland hCoV-19/Iceland/256/2020
 A2480G C2558T T10480C G11083T C14805T T26130C G26144T C27559T

EPI_ISL_417585
 2020-03-17 2020-03-27
 Iceland hCoV-19/Iceland/257/2020
 C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_417586
 2020-03-17 2020-03-27
 Iceland hCoV-19/Iceland/258/2020
 C241T C3037T A10323G C14408T A20268G A23403G

EPI_ISL_417587
 2020-03-17 2020-03-27
 Iceland hCoV-19/Iceland/259/2020
 C8782T C17747T A17858G C18060T A24694T T28144C

EPI_ISL_417588
 2020-03-17 2020-03-27
 Iceland hCoV-19/Iceland/260/2020
 C241T C3037T A10323G C14408T A20268G A23403G

EPI_ISL_417589
 2020-03-17 2020-03-27
 Iceland hCoV-19/Iceland/261/2020
 C241T C3037T C14408T A23403G C25350T

EPI_ISL_417591
 2020-03-17 2020-03-27
 Iceland hCoV-19/Iceland/263/2020
 

EPI_ISL_417592
 2020-03-17 2020-03-27
 Iceland hCoV-19/Iceland/264/2020
 C241T C3037T C13862T C14408T A23403G C28836T

EPI_ISL_417593
 2020-03-17 2020-03-27
 Iceland hCoV-19/Iceland/265/2020
 C241T C1059T C3037T C14408T A23403G G25563T TT27264-

EPI_ISL_417594
 2020-03-17 2020-03-27
 Iceland hCoV-19/Iceland/266/2020
 C241T C1059T C3037T C14408T A23403G G25563T TT27264-

EPI_ISL_417595
 2020-03-17 2020-03-27
 Iceland hCoV-19/Iceland/267/2020
 C241T G526T C1218T C2973T C3037T C12138T C14408T A23403G GGG28881AAC

EPI_ISL_417597
 2020-03-17 2020-03-27
 Iceland hCoV-19/Iceland/269/2020
 C241T C3037T A10323G C14408T A20268G A23403G

EPI_ISL_417598
 2020-03-17 2020-03-27
 Iceland hCoV-19/Iceland/270/2020
 C241T C1059T C3037T G11083T C14408T A23403G G25563T

EPI_ISL_417600
 2020-03-17 2020-03-27
 Iceland hCoV-19/Iceland/272/2020
 C241T C3037T AAT6506- A10323G C14408T A20268G A23403G

EPI_ISL_417602
 2020-03-17 2020-03-27
 Iceland hCoV-19/Iceland/274/2020
 

EPI_ISL_417603
 2020-03-17 2020-03-27
 Iceland hCoV-19/Iceland/275/2020
 T3034C C6317T G11083T C14805T C16054T T17247C T17859C G26144T C28622T G29751C

EPI_ISL_417607
 2020-03-17 2020-03-27
 Iceland hCoV-19/Iceland/279/2020
 C5142T G11083T C14805T T17247C A20288G G26144T

EPI_ISL_417608
 2020-03-17 2020-03-27
 Iceland hCoV-19/Iceland/280/2020
 C241T C3037T C5730T G10870T C14408T G15850T A23403G G23587T GGG28881AAC

EPI_ISL_417609
 2020-03-17 2020-03-27
 Iceland hCoV-19/Iceland/281/2020
 C241T C3037T C14408T C17104T A20268G A23403G G29734C

EPI_ISL_417612
 2020-03-17 2020-03-27
 Iceland hCoV-19/Iceland/284/2020
 C241T C3037T A10323G C14408T A20268G A23403G

EPI_ISL_418023
 2020-03-17 2020-03-28
 Portugal hCoV-19/Portugal/PT0038/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G C25916T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_418024
 2020-03-17 2020-03-28
 Portugal hCoV-19/Portugal/PT0039/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T G4047A C14408T C15324T A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_418025
 2020-03-17 2020-03-28
 Portugal hCoV-19/Portugal/PT0040/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- G11083T T14295C C19273T G26144T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_418026
 2020-03-17 2020-03-28
 Portugal hCoV-19/Portugal/PT0041/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- T514C ATG1605- C28923T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_418183
 2020-03-17 2020-03-28
 Hungary hCoV-19/Hungary/mbl2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G G29266T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_418193
 2020-03-17 2020-03-28
 United States hCoV-19/USA/NY-NYUMC8/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_418198
 2020-03-17 2020-03-28
 United States hCoV-19/USA/NY-NYUMC13/2020
 C241T C1059T C3037T C10851T C14408T A23403G G25563T

EPI_ISL_418199
 2020-03-17 2020-03-28
 United States hCoV-19/USA/NY-NYUMC14/2020
 C241T C1059T C3037T C11916T C14408T C18998T T23032C A23403G G25563T G29540A

EPI_ISL_418203
 2020-03-17 2020-03-28
 United States hCoV-19/USA/NY-NYUMC18/2020
 C241T C1059T C1917T C3037T C14408T A23403G G25563T

EPI_ISL_418204
 2020-03-17 2020-03-28
 United States hCoV-19/USA/NY-NYUMC19/2020
 C241T C1059T A2018G C3037T C14408T T21995C A23403G G25563T

EPI_ISL_418257
 2020-03-17 2020-03-17
 Italy hCoV-19/Italy/TE5056/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATC1- C241T A538W C3037T C4668M T7396W TG8827WK C14408T A23403G GGG28881AAC AAA29901-

EPI_ISL_418295
 2020-03-17 2020-03-17
 United Kingdom hCoV-19/England/SHEF-BFE06/2020
 A2480G C2558T G11083T C14805T G26144T C26735T C26885T

EPI_ISL_418420
 2020-03-17 2020-03-17
 France hCoV-19/France/ARA10170/2020
 C241T C1059T C3037T T13006C C14391T C14408T A23403G G25563T C25688T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_418422
 2020-03-17 2020-03-17
 France hCoV-19/France/ARA10184/2020
 C241T C3037T C14408T C15324T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_418423
 2020-03-17 2020-03-17
 France hCoV-19/France/ARA10188/2020
 C241T C3037T C14408T A14485G C15324T A15860G A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_418424
 2020-03-17 2020-03-17
 France hCoV-19/France/ARA10189/2020
 C241T C3037T C14408T C15324T A15860G A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_418425
 2020-03-17 2020-03-17
 France hCoV-19/France/ARA10192/2020
 C241T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_418426
 2020-03-17 2020-03-17
 France hCoV-19/France/ARA10251/2020
 C241T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_418427
 2020-03-17 2020-03-17
 France hCoV-19/France/ARA10257/2020
 C241T C3037T C14408T C15324T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_418428
 2020-03-17 2020-03-17
 France hCoV-19/France/ARA10282/2020
 C241T C313T C3037T A3076T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_418632
 2020-03-17 2020-03-30
 Belgium hCoV-19/Belgium/ULG-7500/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_418635
 2020-03-17 2020-03-30
 Belgium hCoV-19/Belgium/ULG-8532/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T G21123T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_418679
 2020-03-17 2020-03-30
 United Kingdom hCoV-19/England/20122119202/2020
 G1440A G2891R A27669G

EPI_ISL_418680
 2020-03-17 2020-03-30
 United Kingdom hCoV-19/England/20122119302/2020
 A2480G C2558T G11083T C14805T G26144T

EPI_ISL_418681
 2020-03-17 2020-03-30
 United Kingdom hCoV-19/England/20122119502/2020
 C241T C3037T C14408T A23403G C27679T GGG28881AAC

EPI_ISL_418687
 2020-03-17 2020-03-30
 United Kingdom hCoV-19/England/20124002002/2020
 C1919Y C5893Y G11083T C14805T T17247C C25214T G26144T

EPI_ISL_418690
 2020-03-17 2020-03-30
 United Kingdom hCoV-19/England/20124003702/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T

EPI_ISL_418691
 2020-03-17 2020-03-30
 United Kingdom hCoV-19/England/20124003902/2020
 C1191Y G1440A G2891R C14411Y C27429Y A27669G

EPI_ISL_418692
 2020-03-17 2020-03-30
 United Kingdom hCoV-19/England/20124004302/2020
 A2480G C2558T G11083T C14805T C21411T G26144T

EPI_ISL_418698
 2020-03-17 2020-03-30
 United Kingdom hCoV-19/England/20124012702/2020
 T1477A A2480G C2558T G11083T C14805T C22088T G25595K C25844Y G26144T

EPI_ISL_418700
 2020-03-17 2020-03-30
 United Kingdom hCoV-19/England/20124013202/2020
 ATG1605- C20270T A29683T

EPI_ISL_418701
 2020-03-17 2020-03-30
 United Kingdom hCoV-19/England/20124020402/2020
 C241T C2416T C3037T C14408T C14786T G20578T A23403G G25563T

EPI_ISL_418704
 2020-03-17 2020-03-30
 United Kingdom hCoV-19/England/20124021402/2020
 C241T C3037T C14408T G21724T A23403G GGG28881AAC

EPI_ISL_418706
 2020-03-17 2020-03-30
 United Kingdom hCoV-19/England/20124029802/2020
 A2480G C2558T C5301T G11083T C14805T T22144C G26144T

EPI_ISL_418707
 2020-03-17 2020-03-30
 United Kingdom hCoV-19/England/20124030003/2020
 T1368C C6990T G11083T C14805T C23707T G26144T C28093Y

EPI_ISL_418708
 2020-03-17 2020-03-30
 United Kingdom hCoV-19/England/20124030802/2020
 C241T C3037T C14408T C20844Y A23403G C26534Y GGG28881AAC

EPI_ISL_418756
 2020-03-17 2020-03-30
 United Kingdom hCoV-19/England/20126012702/2020
 C241T C2416T C3037T C14408T C14786T G20578T A23403G G25563T

EPI_ISL_418864 MT322394
 2020-03-17 2020-04-08
 United States SARS-CoV-2/human/USA/VA-DCLS-0001/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C8782T C17747T A17858G C18060T A24694T T28144C C29870A

EPI_ISL_418929 MT263442
 2020-03-17 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW362/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAAT1- C241T C1059T C3037T C14408T A23403G G25563T G29553A C29870M A29903-

EPI_ISL_418930 MT263443
 2020-03-17 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW363/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- AACC34TTTA C8782T T15927G C17747T A17858G C18060T C18401T C24795T C26936T T28144C AAAAAAA29897-

EPI_ISL_418931 MT263444
 2020-03-17 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW364/2020
 ATTAAAGGT1- TACCTTCCCAGGTAACAAACCAACC13- A55M C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAA29892-

EPI_ISL_418933 MT263446
 2020-03-17 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW366/2020
 ATTAAA1- A35T C37H C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_418934 MT263447
 2020-03-17 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW367/2020
 ATTAAAGGT1- TACCTTCCCAGGTAACAAACCAACC13- C8782T T15927G C17747T A17858G C18060T C26936T T27722C T28144C A29903-

EPI_ISL_418936 MT263449
 2020-03-17 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW369/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGA1- C8782T C17747T A17858G C18060T T28144C AA29902-

EPI_ISL_418937 MT263450
 2020-03-17 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW370/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- AACC34HTTH C8782T C17747T A17858G C18060T G21893A C27276T T27384C T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_418939 MT263452
 2020-03-17 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW372/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C8782T T16299C C17747T A17858G C18060T T28144C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_418943 MT263456
 2020-03-17 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW376/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCA1- C8782T C17747T A17858G C18060T T28144C AA29902-

EPI_ISL_418954 MT263468
 2020-03-17 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW388/2020
 ATTAAAG1- ACC35TYH C241T C1059T C3037T C14408T A23403G G25523T G25563T T27869C AAAA29900-

EPI_ISL_418956 MT322395
 2020-03-17 2020-04-08
 United States SARS-CoV-2/human/USA/VA-DCLS-0002/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C3589T C8782T C17747T A17858G C18060T T28144C

EPI_ISL_418957
 2020-03-17 2020-03-31
 United States hCoV-19/USA/VA-DCLS-0003/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C3589T C8782T C13138T C17747T A17858G C18060T T28144C C29870A

EPI_ISL_418958
 2020-03-17 2020-03-31
 United States hCoV-19/USA/VA-DCLS-0004/2020
 ATTAAAGGTT1- C3589T C8782T C17747T A17858G C18060T T28144C

EPI_ISL_418972
 2020-03-17 2020-03-31
 United States hCoV-19/USA/NY-NYUMC26/2020
 C241T C1059T C3037T C12081T C14408T A23403G G25563T

EPI_ISL_418973
 2020-03-17 2020-03-31
 United States hCoV-19/USA/NY-NYUMC27/2020
 C241T C1059T C3037T C4113T T11522G C11916T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_418974
 2020-03-17 2020-03-31
 United States hCoV-19/USA/NY-NYUMC28/2020
 C241T C1059T C3037T C14408T A17457G C17518T A23403G G25563T

EPI_ISL_418976
 2020-03-17 2020-03-31
 United States hCoV-19/USA/NY-NYUMC30/2020
 C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_418977
 2020-03-17 2020-03-31
 United States hCoV-19/USA/NY-NYUMC31/2020
 A2480G C2558T G4207T G11083T C14805T C17010A C19027T C21575T G26144T

EPI_ISL_418978
 2020-03-17 2020-03-31
 United States hCoV-19/USA/NY-NYUMC32/2020
 C241T C2416T C3037T C14408T A23403G G25563T

EPI_ISL_418980
 2020-03-17 2020-03-31
 United States hCoV-19/USA/NY-NYUMC34/2020
 C241T C1059T C3037T C5654T C14408T A23403G G25563T

EPI_ISL_419168
 2020-03-17 2020-04-01
 France hCoV-19/France/ARA10552/2020
 C241T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_419304 LC547526
 2020-03-17 2020-04-02
 Japan hCoV-19/Japan/P4-4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_419406
 2020-03-17 2020-04-02
 United Kingdom hCoV-19/Wales/PHWC-243D0/2020
 A2480G C2558T G11083T C14805T G26144T A29031G A29865R

EPI_ISL_419409
 2020-03-17 2020-04-02
 United Kingdom hCoV-19/Wales/PHWC-24419/2020
 AT1- G1440A G2891A G28851T

EPI_ISL_419428
 2020-03-17 2020-04-02
 United Kingdom hCoV-19/Wales/PHWC-2458F/2020
 ATTA1- C241T C1059T C3037T C14408T A23403G G24368T G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_419440
 2020-03-17 2020-04-02
 United Kingdom hCoV-19/Wales/PHWC-246B9/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_419814 MT451013
 2020-03-17 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC103/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- T490A C3177T C8782T T18736C G19684T C24034T A25050G T26729C C27635T G28077C T28144C A29700G

EPI_ISL_419818 MT451014
 2020-03-17 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC104/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C379A C1059T A1308G C3037T C7420T C14408T T21980G A23403G G25563T

EPI_ISL_419819 MT451015
 2020-03-17 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC105/2020
 A1- A4T C241T C3037T C14408T T18381C C18877T A23403G G25563T

EPI_ISL_419820
 2020-03-17 2020-04-03
 Australia hCoV-19/Australia/VIC106/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T C17375T A20268G A23403G C28854T

EPI_ISL_419841 MT451048
 2020-03-17 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC144/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23403G T25473C GGG28881AAC

EPI_ISL_419842 MT451049
 2020-03-17 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC145/2020
 AT1- T1368C C6990T G11083T C14805T G18985T C23707T G26144T G28378T

EPI_ISL_419843 MT451050
 2020-03-17 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC146/2020
 ATTA1- C40M C2558T G11083T C14805T C25207T G26144T

EPI_ISL_419844 MT451051
 2020-03-17 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC147/2020
 ATTAAAGGT1- C241T C379A C1059T C3037T C14408T C22224T A23403G G25563T G27163T

EPI_ISL_419845 MT451052
 2020-03-17 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC148/2020
 ATTAAAGG1- C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_419846 MT451053
 2020-03-17 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC149/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C6504T C14408T A22962T A22964T A23403G G27996T

EPI_ISL_419847 MT451054
 2020-03-17 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC150/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- T490A C683T C3177T C8782T C11833Y T18736C G19684T C24034T G24914S T26729C C27635T G28077C T28144C A29700G

EPI_ISL_419848 MT451055
 2020-03-17 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC151/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C5884T C8782T G11083T C14805T T17247C A17858G G26144T

EPI_ISL_419849 MT451056
 2020-03-17 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC152/2020
 ATTAAAGGTTTATACC1- G11083T C14805T T17247C G26144T

EPI_ISL_419850 MT451057
 2020-03-17 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC153/2020
 A1- C241T C313T C3037T C14408T C22224T A23403G GGG28881AAC

EPI_ISL_419851 MT451058
 2020-03-17 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC154/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C3784T C14408T A20268G A23403G

EPI_ISL_419852 MT451059
 2020-03-17 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC155/2020
 ATTAAAGG1- C241T C1059T C2523T C3037T C14408T A23403G G25563T

EPI_ISL_419853 MT451060
 2020-03-17 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC156/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_419854 MT451061
 2020-03-17 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC157/2020
 ATTA1- C241T C3037T C14408T C17104T A20268G A23403G G29734C

EPI_ISL_420038
 2020-03-17 2020-04-04
 France hCoV-19/France/BFC2709/2020
 C241T C3037T G3728T C14408T C15324T A23403G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_420041
 2020-03-17 2020-04-04
 France hCoV-19/France/HF2748/2020
 C241T C2416T C3037T C14408T A23403G G25563T AGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29799-

EPI_ISL_420042
 2020-03-17 2020-04-04
 France hCoV-19/France/IDF2768/2020
 C241T C2416T C3037T C14408T A23403G G25563T C29416T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_420045
 2020-03-17 2020-04-04
 France hCoV-19/France/GE2843/2020
 C241T C2416T C3037T C7224T C7819T C9430T C14408T G16846T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_420046
 2020-03-17 2020-04-04
 France hCoV-19/France/IDF2848/2020
 C241T C3037T T4258C C14408T C15324T A23403G AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_420055
 2020-03-17 2020-04-04
 France hCoV-19/France/GE3067/2020
 C241T C3037T C14408T C15324T C18570T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_420069
 2020-03-17 2020-04-04
 Senegal hCoV-19/Senegal/306/2020
 G1440A G2891A

EPI_ISL_420070
 2020-03-17 2020-04-04
 Senegal hCoV-19/Senegal/315/2020
 C241T C3037T C14408T C15324T C19602T C21622T A23403G

EPI_ISL_420151
 2020-03-17 2020-04-05
 Norway hCoV-19/Norway/2087/2020
 ATTAAAGGTT1- T3835Y AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_420152
 2020-03-17 2020-04-05
 Norway hCoV-19/Norway/2088/2020
 ATTAAAGGTTT1- C241T C3037T C14408T A20268G A23403G C28854T AAAAAAAAAAAAAAAAAAAAAA29882-

EPI_ISL_420289
 2020-03-17 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C0619/2020
 C241T A2869G C3037T C14408T A23403G GGG28881AAC C29095T

EPI_ISL_420361
 2020-03-17 2020-04-06
 Belgium hCoV-19/Belgium/GE-0317105/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4582T C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420570
 2020-03-17 2020-04-06
 United States hCoV-19/USA/NY-NYUMC55/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_420572
 2020-03-17 2020-04-06
 United States hCoV-19/USA/NY-NYUMC57/2020
 C241T C1059T C3037T C10851T C14408T A23403G G25563T

EPI_ISL_421302
 2020-03-17 2020-04-07
 United States hCoV-19/USA/WI-UW-44/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G15760A C18171A A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421348 MT370861
 2020-03-17 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08109/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T G1820A C3037T C10851T C14408T A23403G G25563T CCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29835-

EPI_ISL_421349 MT370906
 2020-03-17 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08120/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G G25563T C25688A GTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29828-

EPI_ISL_421350 MT370843
 2020-03-17 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08121/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTT1- C241T C1059T C3037T C14408T A23403G G25563T C25688A AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_421357 MT370866
 2020-03-17 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08135/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- G11083T C14805T C18086T A21137G G26144T G28842T GTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29828-

EPI_ISL_421358 MT370903
 2020-03-17 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08136/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- G11083T C14805T C18086T G26144T G28842T AAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29812-

EPI_ISL_421363 MT370913
 2020-03-17 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08143/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T T3144C C14408T C16260T A23403G G25563T C28821A AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_421364 MT370849
 2020-03-17 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08146/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C8782T C17747T A17858G C18060T T28144C C28708T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_421367 MT370905
 2020-03-17 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08150/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G G25563T TGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29785-

EPI_ISL_421371 MT370859
 2020-03-17 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08403/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATC1- C241T C1059T C3037T A7770G C14408T A20755C A22455G A23403G G25563T TGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29785-

EPI_ISL_421379 MT370907
 2020-03-17 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08416/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C1059T C3037T C14408T A23403G G25563T TGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29785-

EPI_ISL_421394 MT370916
 2020-03-17 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08443/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTG1- C241T C1059T C3037T C14408T A23403G G25563T C28849T GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_421395 MT370901
 2020-03-17 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08444/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_421397 MT370871
 2020-03-17 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08446/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- G199T C241T C1059T C3037T A7291G C11916T C12153T C14408T C18998T A23403G G25563T G29540A AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_421398 MT370914
 2020-03-17 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08447/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCT1- C241T C1059T C3037T C14408T A23403G G25563T GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_421399 MT370876
 2020-03-17 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08448/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G G25563T C29274T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_421400 MT370902
 2020-03-17 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08449/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C10851T C14408T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_421401 MT370886
 2020-03-17 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08450/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C3037T C14408T C18877T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_421403 MT370865
 2020-03-17 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08453/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_421404 MT370899
 2020-03-17 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08455/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G G25563T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_421405 MT370838
 2020-03-17 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08456/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C4456T C14408T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_421417 MT370877
 2020-03-17 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08474/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_421422 MT370868
 2020-03-17 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08485/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C10015T C11916T C14408T C18744T C18998T A23403G G25563T G29540A AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_421425 MT370909
 2020-03-17 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08489/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- G11083T C14805T T17247C G26144T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_421426 MT370841
 2020-03-17 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08490/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- T490A C3177T C6040T C8782T G12478A T18736C C24034T T26729C G28077C T28144C C28896G A29700G AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_421427 MT370872
 2020-03-17 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08491/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T C3037T C14408T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_421429 MT370911
 2020-03-17 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08493/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTT1- C241T C1059T C3037T C14408T A23403G G25563T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_421430 MT370853
 2020-03-17 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08494/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C241T C1059T C3037T C14408T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_421432 MT370894
 2020-03-17 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08496/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C10277T C14408T A23403G G25563T C26625T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_421433 MT370888
 2020-03-17 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08498/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- G11083T C14805T T17247C G26144T G29543C AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_421434 MT370850
 2020-03-17 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08500/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTT1- C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T C28472T G29540A AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_421464
 2020-03-17 2020-04-08
 Portugal hCoV-19/Portugal/PT0061/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_421686
 2020-03-17 2020-04-09
 United States hCoV-19/USA/MN130-MDH130/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A19736M A23403G C23533T G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421692
 2020-03-17 2020-04-09
 United States hCoV-19/USA/MN136-MDH136/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10360A T13171C C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421719
 2020-03-17 2020-04-09
 United States hCoV-19/USA/NY-NYUMC107/2020
 C241T C1059T C3037T C14408T C20719T A23403G G25563T G26995A

EPI_ISL_421721
 2020-03-17 2020-04-09
 United States hCoV-19/USA/NY-NYUMC109/2020
 C241T C1059T C3037T C14408T C18457T A23403G G25563T

EPI_ISL_421734
 2020-03-17 2020-04-09
 Luxembourg hCoV-19/Luxembourg/LNS7970956/2020
 C241T C1059T C3037T C4320T C14408T A23403G G25563T C25688T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_421735
 2020-03-17 2020-04-09
 Luxembourg hCoV-19/Luxembourg/LNS3307371/2020
 A2805G C8782T T9477A C14805T T20327C G25979T T28144C C28657T C28863T ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_421737
 2020-03-17 2020-04-09
 Luxembourg hCoV-19/Luxembourg/LNS2334563/2020
 C241T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_421738
 2020-03-17 2020-04-09
 Luxembourg hCoV-19/Luxembourg/LNS3404815/2020
 C241T C3037T C14408T C15324T A20472G C20629T A23403G G29747C AAAAAAAAAAA29893-

EPI_ISL_421740
 2020-03-17 2020-04-09
 Luxembourg hCoV-19/Luxembourg/LNS1644489/2020
 C241T C1059T C3037T C14408T A23403G G25563T GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_421741
 2020-03-17 2020-04-09
 Luxembourg hCoV-19/Luxembourg/LNS6689955/2020
 C241T C1059T C3037T C14408T A23403G G25563T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_421742
 2020-03-17 2020-04-09
 Luxembourg hCoV-19/Luxembourg/LNS6500589/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_421743
 2020-03-17 2020-04-09
 Luxembourg hCoV-19/Luxembourg/LNS0272441/2020
 C241T C3037T C14408T G18149T A23403G C27532T AAAAAAAAAAAAA29891-

EPI_ISL_421744
 2020-03-17 2020-04-09
 Luxembourg hCoV-19/Luxembourg/LNS7074589/2020
 C241T C1059T C3037T C4320T C14408T A23403G G25563T C25688T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_421745
 2020-03-17 2020-04-09
 Luxembourg hCoV-19/Luxembourg/LNS2299410/2020
 C241T C3037T C3688T C14408T C15324T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_421746
 2020-03-17 2020-04-09
 Luxembourg hCoV-19/Luxembourg/LNS0819394/2020
 C241T C3037T C14408T C15324T A23403G AAAAAAA29897-

EPI_ISL_421747
 2020-03-17 2020-04-09
 Luxembourg hCoV-19/Luxembourg/LNS3770609/2020
 A187G C241T C3037T C13665T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_421748
 2020-03-17 2020-04-09
 Luxembourg hCoV-19/Luxembourg/LNS3052946/2020
 C241T C1059T C3037T C14408T A23403G G25563T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_421750
 2020-03-17 2020-04-09
 Luxembourg hCoV-19/Luxembourg/LNS3035957/2020
 C241T G1914A C3037T G11858A C14408T C15324T A23403G CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_421752
 2020-03-17 2020-04-09
 Luxembourg hCoV-19/Luxembourg/LNS4569788/2020
 C241T C3037T C14408T C15324T A23403G GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_421753
 2020-03-17 2020-04-09
 Luxembourg hCoV-19/Luxembourg/LNS7991123/2020
 C241T C3037T C14408T C15324T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_421754
 2020-03-17 2020-04-09
 Luxembourg hCoV-19/Luxembourg/LNS0814536/2020
 C241T C3037T C14408T A20268G A23403G GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_421755
 2020-03-17 2020-04-09
 Luxembourg hCoV-19/Luxembourg/LNS6897699/2020
 C241T C1059T C3037T C4320T C14408T A23403G G25563T C25688T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_421757
 2020-03-17 2020-04-09
 Luxembourg hCoV-19/Luxembourg/LNS7914820/2020
 A187G C241T C3037T C14408T T22501C A23403G C29535T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_421759
 2020-03-17 2020-04-09
 Luxembourg hCoV-19/Luxembourg/LNS4235576/2020
 C241T A2982G C3037T C14408T G18756T A23403G AAAAA29899-

EPI_ISL_421760
 2020-03-17 2020-04-09
 Luxembourg hCoV-19/Luxembourg/LNS2458673/2020
 A187G C241T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_421761
 2020-03-17 2020-04-09
 Luxembourg hCoV-19/Luxembourg/LNS8602041/2020
 C21T C241T C1059T C3037T G11464A C14408T A23403G G25563T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_422415
 2020-03-17 2020-04-10
 Taiwan hCoV-19/Taiwan/NTU13/2020
 T490A C3177T C6040T C8782T C8950T G12478A T18736C C24034T T26729C G28077C T28144C C28896G C29451T A29700G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_422668 LR878194
 2020-03-17 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_121/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A24862G G27505A GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422670 LR878209
 2020-03-17 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_126/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T T2698C C3037T C11109T C14408T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422671 LR878212
 2020-03-17 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_127/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G A27038T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422672 LR877730
 2020-03-17 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_128/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- C17410T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422673 LR878072
 2020-03-17 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_129/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T T17247C G26144T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422674 LR877724
 2020-03-17 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_130/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422855 LR878180
 2020-03-17 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_95/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T19839C A23403G G28628T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422858 LR878170
 2020-03-17 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_99/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T13006C C14408T T18630C A23403G G25563T C25688T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422888 LR877937
 2020-03-17 2020-04-11
 Netherlands hCoV-19/Netherlands/NoordBrabant_94/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C A535G ATG1605- GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422889 LR877933
 2020-03-17 2020-04-11
 Netherlands hCoV-19/Netherlands/NoordBrabant_95/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422907 LR878214
 2020-03-17 2020-04-11
 Netherlands hCoV-19/Netherlands/ZuidHolland_35/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C3037T C14408T C16017T T16515C A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422908 LR878211
 2020-03-17 2020-04-11
 Netherlands hCoV-19/Netherlands/ZuidHolland_36/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C3037T C14408T C16017T T16515C A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422909 LR878213
 2020-03-17 2020-04-11
 Netherlands hCoV-19/Netherlands/ZuidHolland_37/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6120T C14408T G20275A A23403G G23610C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422910 LR877721
 2020-03-17 2020-04-11
 Netherlands hCoV-19/Netherlands/ZuidHolland_38/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T1570C G11083T C14805T T17247C G26144T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422911 LR877722
 2020-03-17 2020-04-11
 Netherlands hCoV-19/Netherlands/ZuidHolland_39/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422912 LR877727
 2020-03-17 2020-04-11
 Netherlands hCoV-19/Netherlands/ZuidHolland_40/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G20275A C22214G A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422969 MT293164
 2020-03-17 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW399/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTG1- C241T C1059T C3037T C14408T A23403G G25563T G29553A AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_422969 MT293164
 2020-03-17 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW399/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTG1- C241T C1059T C3037T C14408T A23403G G25563T G29553A AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_422970 MT293165
 2020-03-17 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW400/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_422970 MT293165
 2020-03-17 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW400/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_422971 MT293166
 2020-03-17 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW401/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA A6693G C8782T C17747T A17858G C18060T C25339T T28144C AAAAAAA29897-

EPI_ISL_422971 MT293166
 2020-03-17 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW401/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA A6693G C8782T C17747T A17858G C18060T C25339T T28144C AAAAAAA29897-

EPI_ISL_422972 MT293167
 2020-03-17 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW402/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCA1- T833C C1059T C3037T C14408T A23403G G25563T C27964T

EPI_ISL_422972 MT293167
 2020-03-17 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW402/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCA1- T833C C1059T C3037T C14408T A23403G G25563T C27964T

EPI_ISL_422973 MT293168
 2020-03-17 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW403/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCG1- C8782T C17747T A17858G C18060T T28144C A29903-

EPI_ISL_422973 MT293168
 2020-03-17 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW403/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCG1- C8782T C17747T A17858G C18060T T28144C A29903-

EPI_ISL_422974 MT293169
 2020-03-17 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW404/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C8782T C17326T C17747T A17858G A17884G C18060T G19645T T28144C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_422974 MT293169
 2020-03-17 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW404/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAA1- C8782T C17326T C17747T A17858G A17884G C18060T G19645T T28144C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_422976 MT293171
 2020-03-17 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW406/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAA29896-

EPI_ISL_422976 MT293171
 2020-03-17 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW406/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAA29896-

EPI_ISL_422977 MT293172
 2020-03-17 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW407/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- AACC34WTTA C241T C1059T C3037T C12880T C14408T A23403G G25563T G29553A AA29902-

EPI_ISL_422977 MT293172
 2020-03-17 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW407/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- AACC34WTTA C241T C1059T C3037T C12880T C14408T A23403G G25563T G29553A AA29902-

EPI_ISL_422981 MT293176
 2020-03-17 2020-04-03
 United States SARS-CoV-2/human/USACT-UW411/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C241T C1059T C3037T C14408T A23403G G25563T G29553A -29904AAAAAAAAAAA

EPI_ISL_422981 MT293176
 2020-03-17 2020-04-03
 United States SARS-CoV-2/human/USACT-UW411/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C241T C1059T C3037T C14408T A23403G G25563T G29553A -29904AAAAAAAAAAA

EPI_ISL_422983
 2020-03-17 2020-04-12
 United States hCoV-19/USA/UN-UW-1407/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C241T C1059T C3037T C14408T A23403G G25563T T27895C C28289A T28340A G29553A AAAA29900-

EPI_ISL_422984 MT293179
 2020-03-17 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW414/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C8782T C17747T A17858G C18060T G22984A T27384C T28144C T29867H -29904AAAAAAAAAAAAA

EPI_ISL_422984 MT293179
 2020-03-17 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW414/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C8782T C17747T A17858G C18060T G22984A T27384C T28144C T29867H -29904AAAAAAAAAAAAA

EPI_ISL_422991 MT293186
 2020-03-17 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW421/2020
 ATTAAAGGTTTATACCTTCCC1- C8782T A9634T C17747T A17858G C18060T CACAATTGG25416- T28144C AAAAAAAA29896-

EPI_ISL_422991 MT293186
 2020-03-17 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW421/2020
 ATTAAAGGTTTATACCTTCCC1- C8782T A9634T C17747T A17858G C18060T CACAATTGG25416- T28144C AAAAAAAA29896-

EPI_ISL_422992 MT293187
 2020-03-17 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW422/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- AC35WT C8782T C17747T A17858G C18060T T28144C AA29902-

EPI_ISL_422992 MT293187
 2020-03-17 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW422/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- AC35WT C8782T C17747T A17858G C18060T T28144C AA29902-

EPI_ISL_422995 MT293190
 2020-03-17 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW425/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGA1- C4795T C5730T C8782T C17747T A17858G C18060T T27384C T28144C A29903-

EPI_ISL_422995 MT293190
 2020-03-17 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW425/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGA1- C4795T C5730T C8782T C17747T A17858G C18060T T27384C T28144C A29903-

EPI_ISL_422996 MT293191
 2020-03-17 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW426/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCT1- C241T C1059T C3037T C14408T A23403G G25563T G29553A A29903-

EPI_ISL_422996 MT293191
 2020-03-17 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW426/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCT1- C241T C1059T C3037T C14408T A23403G G25563T G29553A A29903-

EPI_ISL_422997
 2020-03-17 2020-04-12
 United States hCoV-19/USA/WA-UW-1351/2020
 ATTAAAGGT1- TACCTTCCCAGGTAACAAACCAACC13- C8782T C17747T A17858G C18060T T28144C C29733T A29903-

EPI_ISL_423857
 2020-03-17 2020-04-12
 United Kingdom hCoV-19/England/20124036306/2020
 C241T C3037T C14408T A23403G G25429T

EPI_ISL_424176 MT326184
 2020-03-17 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1472/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTC1- C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T C28697T

EPI_ISL_424178 MT326185
 2020-03-17 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1342/2020
 AT1- AGGT6- CCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGG15- C241T C1059T C3037T C14408T G16912T A23403G G25563T G29553A -29904AAAANANAAAAAAA

EPI_ISL_424364
 2020-03-17 2020-04-13
 India hCoV-19/India/3118/2020
 ATTAAAGGTTTAT1- C241T C3037T G4255T C14408T A20355G A23403G A26530G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_424365
 2020-03-17 2020-04-13
 India hCoV-19/India/3239/2020
 ATTAAAGGTTTA1- C241T C3037T G4255T C14408T A20355G A23403G A26530G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_424671 MT339041
 2020-03-17 2020-04-13
 United States SARS-CoV-2/human/USA/AZ-ASU2936/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_424969
 2020-03-17 2020-04-14
 Taiwan hCoV-19/Taiwan/CGMH-CGU-13/2020
 ATT1- C241T C3037T C6026T C14408T G22051T A23403G GGG28881AAC AA29902-

EPI_ISL_424970
 2020-03-17 2020-04-14
 Taiwan hCoV-19/Taiwan/CGMH-CGU-14/2020
 ATT1- C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_424971
 2020-03-17 2020-04-14
 Taiwan hCoV-19/Taiwan/CGMH-CGU-15/2020
 C241T C3037T C14408T A20268G A23403G G29473A G29734C

EPI_ISL_424973
 2020-03-17 2020-04-14
 Taiwan hCoV-19/Taiwan/CGMH-CGU-17/2020
 ATTA1- C241T C1059T C3037T T3178G C14408T G21225T A23403G G25563T

EPI_ISL_425123 MT582461
 2020-03-17 2020-04-14
 Germany SARS-CoV-2/human/DEU/NRW-39/2020
 A3675R C8109Y C8782T C17470T T22447C C26088T T28144C

EPI_ISL_425124 MT582460
 2020-03-17 2020-04-14
 Germany SARS-CoV-2/human/DEU/NRW-40/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_425217
 2020-03-17 2020-04-14
 Spain hCoV-19/Spain/Valencia93/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425218
 2020-03-17 2020-04-14
 Spain hCoV-19/Spain/Valencia94/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C398T C8782T A19403G C26088T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425219
 2020-03-17 2020-04-14
 Spain hCoV-19/Spain/Valencia95/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6638T C8782T T9477A C14805T G25979T T28118C T28144C G28287T C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425220
 2020-03-17 2020-04-14
 Spain hCoV-19/Spain/Valencia96/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3406T C14408T A20268G A23403G G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425221
 2020-03-17 2020-04-14
 Spain hCoV-19/Spain/Valencia97/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1882T C3037T C8208T C14408T A23403G C29144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425359
 2020-03-17 2020-04-14
 United Kingdom hCoV-19/England/CAMB-74C30/2020
 C241T C3037T C3096T C14408T A23403G GGG28881AAC

EPI_ISL_425362
 2020-03-17 2020-04-14
 United Kingdom hCoV-19/England/CAMB-74C8B/2020
 C241T A2480G C2558T C14805T C25000T G26144T

EPI_ISL_425484
 2020-03-17 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10E010/2020
 C241T C3037T C14408T C18264T A23403G

EPI_ISL_425486
 2020-03-17 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10E03E/2020
 G431A ATG1605- C20270T A29683T

EPI_ISL_425487
 2020-03-17 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10E04D/2020
 C241T C3037T C14408T T15351G G21518T A23403G

EPI_ISL_425502
 2020-03-17 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10E14A/2020
 G11083T C14805T C23707T G26144T

EPI_ISL_425644
 2020-03-17 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10EB6A/2020
 C241T C3037T C14408T T15351G G21518T A23403G

EPI_ISL_425703
 2020-03-17 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR164/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425711
 2020-03-17 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR171/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A7479G G11083T C14805T T17247C C25572T G26144T C28887T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425713
 2020-03-17 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR173/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4540T C8782T T9477A C14805T C25714T G25979T C26029A T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425715
 2020-03-17 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR175/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- A6616G C7423T G15708C G21641T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425717
 2020-03-17 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR177/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G13835T C14408T A20268G A23403G G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425721
 2020-03-17 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR180/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C3787T C9857T C16362T C16596T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425731
 2020-03-17 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR200/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C2558T C6040T G11083T C14805T G21786T G25471C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425851
 2020-03-17 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB047/2020
 C988T G11083T C14805T T17247C C19484T G26144T C29585T

EPI_ISL_425852
 2020-03-17 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB048/2020
 C988T G11083T C14805T T17247C C19484T G26144T

EPI_ISL_426359
 2020-03-17 2020-04-16
 Czech Republic hCoV-19/Czech Republic/Seq6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCAT1- C241T C3037T C14408T A23403G GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_426500
 2020-03-17 2020-04-17
 United States hCoV-19/USA/AZ-TG268099/2020
 C241T C1059T C3037T C14408T C22802G A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_426501
 2020-03-17 2020-04-17
 United States hCoV-19/USA/AZ-TG268183/2020
 C241T C1059T C3037T C8293T C14408T A23403G G25563T C27964T A29006G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426502
 2020-03-17 2020-04-17
 United States hCoV-19/USA/AZ-TG268188/2020
 C6027T A10236G G11083T C14805T T17247C C17750T C24130T G25563T G26144T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426503
 2020-03-17 2020-04-17
 United States hCoV-19/USA/AZ-TG268281/2020
 C241T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426504
 2020-03-17 2020-04-17
 United States hCoV-19/USA/AZ-TG268282/2020
 T490A A2565G C3177T C8782T C15960T T18736C G19684T C22986T C24034T T26729C C27635T G28077C T28144C A29700G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426505
 2020-03-17 2020-04-17
 United States hCoV-19/USA/AZ-TG268289/2020
 C241T C1059T C3037T C3267T C8293T C14408T A23403G G25563T C27964T A29006G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426506
 2020-03-17 2020-04-17
 United States hCoV-19/USA/AZ-TG268350/2020
 C241T C313T C3037T C14408T A23403G GGG28881AAC C29614T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426510
 2020-03-17 2020-04-17
 United States hCoV-19/USA/AZ-TG268657/2020
 C241T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426527
 2020-03-17 2020-04-17
 United States hCoV-19/USA/AZ-TG269848/2020
 C241T C3037T C14408T A23403G A25905T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426530
 2020-03-17 2020-04-17
 United States hCoV-19/USA/AZ-TG269875/2020
 C241T C379A C1059T C3037T C14408T C18576T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426535
 2020-03-17 2020-04-17
 United States hCoV-19/USA/AZ-TG271578/2020
 C241T C1059T C3037T C3267T C8293T C14408T A23403G G25563T C27964T A29006G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426537
 2020-03-17 2020-04-17
 United States hCoV-19/USA/AZ-TG271854/2020
 T3171A C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426583
 2020-03-17 2020-04-17
 Uruguay hCoV-19/Uruguay/UY-8/2020
 C8782T A11782G C17747T A17858G C18060T A24694T T28144C

EPI_ISL_426630
 2020-03-17 2020-04-17
 Taiwan hCoV-19/Taiwan/TSGH-02/2020
 C228T G1397A G9479T A9514G G11083T A19818G G26720C G28202T T28688C T28835C G29742T -29904TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAAAAAAAAACAAAAACAAAAAAAAAAAAAAATATCAAAAA

EPI_ISL_426631
 2020-03-17 2020-04-17
 Taiwan hCoV-19/Taiwan/TSGH-03/2020
 A1G C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_426632
 2020-03-17 2020-04-17
 Taiwan hCoV-19/Taiwan/TSGH-04/2020
 C241T C1059T C3037T T7217C C14408T C18568T A23403G G25563T

EPI_ISL_426637 MT451219
 2020-03-17 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC327/2020
 A1- C2558T G11083T C14805T G26144T

EPI_ISL_426638 MT451220
 2020-03-17 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC328/2020
 ATTAAAGG1- C2558T G11083T C14805T G26144T

EPI_ISL_426639 MT451221
 2020-03-17 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC329/2020
 ATTA1- C241T C3037T G5384T C14408T G22899T A23403G

EPI_ISL_427350
 2020-03-17 2020-04-18
 Belgium hCoV-19/Belgium/ULG-10099/2020
 C241T C3037T C14408T C15277T C15324T A23403G

EPI_ISL_427359
 2020-03-17 2020-04-18
 Belgium hCoV-19/Belgium/ULG-10108/2020
 C241T C2773T C3037T C14408T C18348T A23403G A28081G

EPI_ISL_428230
 2020-03-17 2020-04-20
 Taiwan hCoV-19/Taiwan/TSGH-13/2020
 A79C C228T G1397A G9479T A9514G G11083T A19818G T24450A G26720C G28202T T28688C T28835C G29742T -29898AAAAC

EPI_ISL_428261
 2020-03-17 2020-04-20
 United States hCoV-19/USA/WI-UW-165/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428262
 2020-03-17 2020-04-20
 United States hCoV-19/USA/WI-UW-166/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C8782T T18736C C24034T T26729C C27635T G28077C T28144C A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428826
 2020-03-17 2020-04-22
 Singapore hCoV-19/Singapore/47/2020
 ATTA1- C6312A A10115R G11083T C13730T C19524T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_428855
 2020-03-17 2020-04-22
 Gambia hCoV-19/Gambia/GC19-015/2020
 C241T C3037T C6573T C14408T A23403G C25528T GGG28881AAC

EPI_ISL_429169
 2020-03-17 2020-04-23
 Thailand hCoV-19/Thailand/Bangkok-0033/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C11355T C14408T A23403G GGG28881AAC AAAA29900-

EPI_ISL_429170
 2020-03-17 2020-04-23
 Thailand hCoV-19/Thailand/Bangkok-0034/2020
 ATTA1- A895G C2942T G4390T C8782T C9598T G20134T T20827Y G24047A T28144C

EPI_ISL_429208
 2020-03-17 2020-04-23
 Switzerland hCoV-19/Switzerland/GE2164/2020
 ATTAAA1- C241T C3037T C14408T C15324T A23403G

EPI_ISL_429226
 2020-03-17 2020-04-23
 Italy hCoV-19/Italy/TE5551/2020
 A187G C241T AC538WM C3037T C14408T A23403G AAAA29900-

EPI_ISL_429227
 2020-03-17 2020-04-23
 Italy hCoV-19/Italy/TE5553/2020
 C241T C3037T T7396W C14408T C20016T A23403G GGG28881AAC AAAA29900-

EPI_ISL_429304
 2020-03-17 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH56/2020
 C241T C1059T C1302T C3037T C9979T C14408T A23403G G25563T G29779T

EPI_ISL_429305
 2020-03-17 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH57/2020
 C241T C1059T C1302T C3037T C14408T A23403G G25563T

EPI_ISL_429306
 2020-03-17 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH60/2020
 C241T C1059T C3037T G10465A C14408T C21742T A23403G G25563T G28899T

EPI_ISL_429307
 2020-03-17 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH61/2020
 C241T C1059T C1302T C3037T C14408T A23403G G25563T

EPI_ISL_429308
 2020-03-17 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH62/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_429310
 2020-03-17 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH64/2020
 C241T C1059T C3037T T8788C C14408T A23403G G25563T G26951A GAT27382CTC

EPI_ISL_429311
 2020-03-17 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH65/2020
 C241T C1059T C3037T T8788C C14408T T22917G A23403G G25563T G26951A

EPI_ISL_429687
 2020-03-17 2020-04-24
 Brazil hCoV-19/Brazil/CV31/2020
 ATTAAA1- C241T C3037T T9145A C14408T C15346A A20268G A23403G G23755T TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_429688
 2020-03-17 2020-04-24
 Brazil hCoV-19/Brazil/CV32/2020
 ATTAA1- C241T C3037T T9145A C14408T A23403G G25793T GGG28881AAC T29148C AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_429867
 2020-03-17 2020-04-24
 Turkey hCoV-19/Turkey/HSGM-4505/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_429868
 2020-03-17 2020-04-24
 Turkey hCoV-19/Turkey/HSGM-4598/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C884T G1397A G8653T C10702T C11074T G11083T T28688C G29742T

EPI_ISL_429869
 2020-03-17 2020-04-24
 Turkey hCoV-19/Turkey/HSGM-4701/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T C18877T C22444T A23403G G25563T C26735T C28854T

EPI_ISL_429994 MT811546
 2020-03-17 2020-04-24
 Jordan SARS-CoV-2/human/JOR/SEARCH-0034-JOR/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A23403G GGG28881AAC CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_429999 MT811551
 2020-03-17 2020-04-24
 Jordan SARS-CoV-2/human/JOR/SEARCH-0041-JOR/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A23403G GGG28881AAC CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_430001 MT811553
 2020-03-17 2020-04-24
 Jordan SARS-CoV-2/human/JOR/SEARCH-0043-JOR/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C313T C1178T C3037T C14408T A23403G GGG28881AAC CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_430004 MT811556
 2020-03-17 2020-04-24
 Jordan SARS-CoV-2/human/JOR/SEARCH-0046-JOR/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T G11365T C14408T A23403G GGG28881AAC CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_430014 MT811564
 2020-03-17 2020-04-24
 Jordan SARS-CoV-2/human/JOR/SEARCH-0056-JOR/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- G11083T C14805T G26144T G28842T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_430132 MT627620
 2020-03-17 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S278/2020
 T490A C3177T C6040T C8782T G12478A T14514C T18736C C19895T C24034T T26729C G28077C T28144C C28896G A29700G

EPI_ISL_430199 MT632559
 2020-03-17 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S161/2020
 C8782T C17747T A17858G C18060T T23010C G25471T T28144C

EPI_ISL_430208 MT632589
 2020-03-17 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S170/2020
 G1401A C8782T C17747T A17858G C18060T T28144C

EPI_ISL_430841
 2020-03-17 2020-04-28
 Thailand hCoV-19/Thailand/NIH-2492/2020
 A1GGAGGRARGGVGAGGGTHGGAAAACHAACCTA -4GGGTACTATGCTCAGTACCTGGGTGACGG AGG6TCA T11C -17CCAAACCTCAGCAYYACACARTM A895G C2942T G4390T C8782T C9598T G20134T G24047A T28144C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_431013
 2020-03-17 2020-04-29
 United States hCoV-19/USA/AK-PHL010/2020
 ATTAAAGGTTTATACC1- C241T C3037T C6504T C14408T A19403W C21530Y T21585Y A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_431014
 2020-03-17 2020-04-29
 United States hCoV-19/USA/AK-PHL011/2020
 ATTAAAGGTTT1- T2266C C6027T A10236G G11083T C14805T T17247C G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_431780
 2020-03-17 2020-04-29
 China hCoV-19/Fujian/IM3520010T/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T -5121A C14408T A23403G G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_434536
 2020-03-17 2020-04-29
 Costa Rica hCoV-19/Costa Rica/0003/2020
 ATTAAAGGTTTATACCTTCCCAG1- C8782T GATATGGTT11267- A12792T G12794T A12796T G12798A C17747T A17858G C18060T T22355A A24694T T28144C T29856G TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAA29858- A29900T A29903G

EPI_ISL_434649
 2020-03-17 2020-04-30
 Sweden hCoV-19/Sweden/20-05856/2020
 C241T C3037T C14408T A23403G

EPI_ISL_434690
 2020-03-17 2020-05-01
 United States hCoV-19/USA/MD-HP00015/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_434704
 2020-03-17 2020-05-01
 Thailand hCoV-19/Thailand/NIH-2492-2/2020
 A1TTA -4GGGTACTATGCTCAGTACCTGGGTGACGG AGG6TCA T11C -16CCCAAACCTCAGCAYYACACAAT A895G C2942T G4390T C8782T C9598T G20134T G24047A T28144C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_434729
 2020-03-17 2020-05-01
 United States hCoV-19/USA/TX-HMH019/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_434731
 2020-03-17 2020-05-01
 United States hCoV-19/USA/TX-HMH021/2020
 T490A C3177T C6040T C8782T C8950T G12478A T18736C T19713C C24034T T26729C G28077C T28144C C28896G C29451T A29700G

EPI_ISL_434732
 2020-03-17 2020-05-01
 United States hCoV-19/USA/TX-HMH022/2020
 T490A C3177T C6040T C6843T C8782T C8950T G12478A T18736C C24034T T26729C G28077C T28144C C28896G C29451T A29700G

EPI_ISL_434764
 2020-03-17 2020-05-01
 United States hCoV-19/USA/TX-HMH055/2020
 C241T C313T C3037T C14408T G18826T A23403G GGG28881AAC

EPI_ISL_435103
 2020-03-17 2020-05-02
 India hCoV-19/India/NCDC-01604/2020
 C884T G1397A T8022K T8598Y G8653T C9039M G11083T T16993C T18690K T22515Y T25461C A27191R G29742T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_435104
 2020-03-17 2020-05-02
 India hCoV-19/India/NCDC-01614/2020
 C884T G1397A C5730T T8022K A8026W G8653T G11083T T16993C AG24389MS T25461C A27646C T28688C G29742T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_435105
 2020-03-17 2020-05-02
 India hCoV-19/India/NCDC-01616/2020
 C884T G1397A T8022K G8653T G11083T T16993C G19861A A23116W T25461C T28688Y G29742T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_435109
 2020-03-17 2020-05-02
 India hCoV-19/India/NCDC-01638/2020
 T456Y A1518R A1520R A2480G C2558T C6395T T8022G A8026T G9471C T9475W G11083T C14805T A15035R A18390R AG24389MS G26144T ACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29695-

EPI_ISL_435281
 2020-03-17 2020-05-04
 Indonesia hCoV-19/Indonesia/JKT-EIJK0141/2020
 ATTAAAGGTTTA1- C6573T C12823T G29734T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871G

EPI_ISL_435316
 2020-03-17 2020-05-04
 Vietnam hCoV-19/Vietnam/VNHN_0985/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- A2480G C2558T G10054A G11083T C14805T G25311T G26144T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_436057 MT434790
 2020-03-17 2020-05-05
 United States SARS-CoV-2/human/USA/NY-CDC-SURV0183NYC/2020
 C241T C1059T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_436058 MT434791
 2020-03-17 2020-05-05
 United States SARS-CoV-2/human/USA/NY-CDC-SURV0186NYC/2020
 C241T C1059T C1917T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_436059 MT434792
 2020-03-17 2020-05-05
 United States SARS-CoV-2/human/USA/NY-CDC-SURV0240NYC/2020
 C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_436064 MT434785
 2020-03-17 2020-05-05
 United States SARS-CoV-2/human/USA/NY-CDC-SURV0397NYC/2020
 G11083T T17247C G24095T G26144T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_436065 MT434797
 2020-03-17 2020-05-05
 United States SARS-CoV-2/human/USA/NY-CDC-SURV0407NYC/2020
 C241T C1059T C14408T C16260T A23403G G25563T C28821A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_436071 MT434803
 2020-03-17 2020-05-05
 United States SARS-CoV-2/human/USA/NY-CDC-SURV0513NYC/2020
 C241T C1059T G11291A C11916T C14408T C18998T A23403G G25563T C27011T G29540A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_436073 MT434804
 2020-03-17 2020-05-05
 United States SARS-CoV-2/human/USA/NY-CDC-SURV0710NYC/2020
 C241T C1059T C14408T C16726T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_436081 MT434811
 2020-03-17 2020-05-05
 United States SARS-CoV-2/human/USA/NY-CDC-SURV0996NYC/2020
 C241T C1059T C14408T T18632G A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_436283
 2020-03-17 2020-05-06
 Spain hCoV-19/Spain/Valencia188/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C14408T T17126C A20268G A23403G CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_436377
 2020-03-17 2020-05-06
 Spain hCoV-19/Spain/Valencia282/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C398T C8782T C26088T T28144C AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_436383
 2020-03-17 2020-05-06
 Spain hCoV-19/Spain/Valencia288/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_436384
 2020-03-17 2020-05-06
 Spain hCoV-19/Spain/Valencia289/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C3511T C14408T G17427T A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_436386
 2020-03-17 2020-05-06
 Spain hCoV-19/Spain/Valencia291/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T G701T C3037T C10650T C14408T C18788T A20268G A23403G TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_436388
 2020-03-17 2020-05-06
 Spain hCoV-19/Spain/Valencia293/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T G5572A C14408T C19488T A23403G C23613T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_436389
 2020-03-17 2020-05-06
 Spain hCoV-19/Spain/Valencia294/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- T514C ATG1605- C10456T G17014T C17410T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_436390
 2020-03-17 2020-05-06
 Spain hCoV-19/Spain/Valencia295/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T T17126C A20268G G21520A A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_436391
 2020-03-17 2020-05-06
 Spain hCoV-19/Spain/Valencia296/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C3037T C14408T A20268G A23403G TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_436889 MT439253
 2020-03-17 2020-05-06
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20173/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23403G CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_437253
 2020-03-17 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0054/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_437254
 2020-03-17 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0055/2020
 A2480G C2558T G11083T A11090T C14805T G17338T C20429T G26144T

EPI_ISL_437885 MT459885
 2020-03-17 2020-05-11
 Greece SARS-CoV-2/human/GRC/217_34885/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T A4282G C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_437886 MT459886
 2020-03-17 2020-05-11
 Greece SARS-CoV-2/human/GRC/218_35009/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T T21357G A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_437889 MT459891
 2020-03-17 2020-05-11
 Greece SARS-CoV-2/human/GRC/223_34904/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T C19862T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_437943
 2020-03-17 2020-05-12
 Austria hCoV-19/Austria/CeMM0074/2020
 C241T C1059T C3037T C14408T T22521K A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_437944
 2020-03-17 2020-05-12
 Austria hCoV-19/Austria/CeMM0076/2020
 C241T C1059T C3037T C14408T T22521K A23403G G25563T G28851T G29315T AAAAAAA29897-

EPI_ISL_437945
 2020-03-17 2020-05-12
 Austria hCoV-19/Austria/CeMM0077/2020
 C241T C1059T C3037T C12923Y C14408T A23403G G25563T AAAAAAAAAAAAAAA29889-

EPI_ISL_437970
 2020-03-17 2020-05-12
 Austria hCoV-19/Austria/CeMM0112/2020
 C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_438056
 2020-03-17 2020-05-12
 Austria hCoV-19/Austria/CeMM0222/2020
 C241T C3037T C14408T T22521K A23403G A24862G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_438057
 2020-03-17 2020-05-12
 Austria hCoV-19/Austria/CeMM0223/2020
 C241T A1140C C3037T C14408T A19652G A20268G T22521K A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_438058
 2020-03-17 2020-05-12
 Austria hCoV-19/Austria/CeMM0224/2020
 C241T A1140C C3037T C5621Y C14408T C14757T A19652G A20268G T22521K A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_438059
 2020-03-17 2020-05-12
 Austria hCoV-19/Austria/CeMM0225/2020
 C241T G2180K C3037T G12832A C14408T T22521K A23403G C26110Y GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_438060
 2020-03-17 2020-05-12
 Austria hCoV-19/Austria/CeMM0226/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_438222
 2020-03-17 2020-05-12
 United States hCoV-19/USA/MD-HP00025/2020
 C241T C1059T C1917T C3037T C8697T C14408T A23403G G25563T C27434T

EPI_ISL_438229
 2020-03-17 2020-05-12
 United States hCoV-19/USA/DC-HP00070/2020
 C241T C1059T C3037T C14408T A23403G G25563T G25726T

EPI_ISL_438231
 2020-03-17 2020-05-12
 United States hCoV-19/USA/DC-HP00073/2020
 C241T C1059T A1817G C3037T C14408T A23403G G25563T C26768T

EPI_ISL_441420
 2020-03-17 2020-05-12
 United Kingdom hCoV-19/Northern Ireland/NIRE-FB40C/2020
 ATTA1- A2480G C2558T A6569G G11083T C14805T G26144T C29870A

EPI_ISL_441423
 2020-03-17 2020-05-12
 United Kingdom hCoV-19/Northern Ireland/NIRE-FB439/2020
 ATTAAAGGTTTATAC1- ATG1605- C6696T C11001T T22729C C25844T C29870A

EPI_ISL_441426
 2020-03-17 2020-05-12
 United Kingdom hCoV-19/Northern Ireland/NIRE-FB466/2020
 AT1- ATG1605- A2404T C6696T C11001T C29870A

EPI_ISL_441431
 2020-03-17 2020-05-12
 United Kingdom hCoV-19/Northern Ireland/NIRE-FB4B1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- G1440A G2891A C4763T G17808A A27669G C29870A

EPI_ISL_441432
 2020-03-17 2020-05-12
 United Kingdom hCoV-19/Northern Ireland/NIRE-FB4C0/2020
 ATTAAAGGTTTA1- ATG1605- C6696T A10785G C11001T C18326T G23311T C23525T C29870A

EPI_ISL_441435
 2020-03-17 2020-05-12
 United Kingdom hCoV-19/Northern Ireland/NIRE-FB4FD/2020
 ATTAAAGGTTTATACCTT1- ATG1605- C6696T C11001T G27364C C29870A

EPI_ISL_441436
 2020-03-17 2020-05-12
 United Kingdom hCoV-19/Northern Ireland/NIRE-FB509/2020
 ATTAAAGGTTTA1- C241T C3037T C14408T A23403G GGG28881AAC C29870A

EPI_ISL_443230
 2020-03-17 2020-05-12
 Singapore hCoV-19/Singapore/138/2020
 C241T C1059T C3037T C4421Y C14408T C14786T C18166T A23403G G25563T AAAAAAAAAAAA29892-

EPI_ISL_443231
 2020-03-17 2020-05-12
 Singapore hCoV-19/Singapore/139/2020
 A3481R A8621W C8782T T25394C C26088T T28144C AAAAAAAAAAAA29892-

EPI_ISL_443232
 2020-03-17 2020-05-12
 Singapore hCoV-19/Singapore/140/2020
 C6312A A8413R G11083T C13730T C17639T C18115Y C23929T C28311T A29720G AAAAAAAAAAAA29892-

EPI_ISL_443233
 2020-03-17 2020-05-12
 Singapore hCoV-19/Singapore/141/2020
 G1440A G2891R T23542Y AAAAAAAAAAAA29892-

EPI_ISL_443234
 2020-03-17 2020-05-12
 Singapore hCoV-19/Singapore/142/2020
 C241T C3037T C14408T T19839C A23403G C28289T GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_443235
 2020-03-17 2020-05-12
 Singapore hCoV-19/Singapore/143/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAA29892-

EPI_ISL_443236
 2020-03-17 2020-05-12
 Singapore hCoV-19/Singapore/144/2020
 C241T C1059T C3037T C4551T C14408T T18351C A23403G G25563T C26885Y G29425S GA29427KR AAAAAAAAAAAA29892-

EPI_ISL_443237
 2020-03-17 2020-05-12
 Singapore hCoV-19/Singapore/145/2020
 C66T C6312A G11083T C13730T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_443238
 2020-03-17 2020-05-12
 Singapore hCoV-19/Singapore/146/2020
 C241T C2005Y C3037T C14408T A20268G A23403G C26456Y A29257R G29734C AAAAAAAAAAAA29892-

EPI_ISL_443300
 2020-03-17 2020-05-12
 France hCoV-19/France/IDF3081/2020
 C241T C1059T C3037T G11083T C14408T C21575T A23403G G25563T GAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29864-

EPI_ISL_444568
 2020-03-17 2020-05-14
 United States hCoV-19/USA/IL-NM073/2020
 C8782T G16381A T17877C G25500T T28144C G28878A G29742A

EPI_ISL_444773
 2020-03-17 2020-05-14
 United States hCoV-19/USA/NY-NYUMC656/2020
 C241T C1059T C1917T C3037T C14408T A23403G G25563T

EPI_ISL_444774
 2020-03-17 2020-05-14
 United States hCoV-19/USA/NY-NYUMC657/2020
 C241T C1059T C3037T C14408T C21642T A23403G G25563T

EPI_ISL_444775
 2020-03-17 2020-05-14
 United States hCoV-19/USA/NY-NYUMC658/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_444786
 2020-03-17 2020-05-14
 United States hCoV-19/USA/NY-NYUMC669/2020
 C8078T G11083T C12488T C14805T T17247C G26144T T28251G CA28253TC

EPI_ISL_444788
 2020-03-17 2020-05-14
 United States hCoV-19/USA/NY-NYUMC671/2020
 C241T C1059T C3037T C14408T A23403G G25563T G28077T

EPI_ISL_445094
 2020-03-17 2020-05-15
 United States hCoV-19/USA/CA-SR0094/2020
 C241T C1059T C1887T C3037T C14408T A23403G G25563T

EPI_ISL_445222
 2020-03-17 2020-05-15
 Sweden hCoV-19/Sweden/20-05823/2020
 C241T C3037T C14195A C14408T A23403G

EPI_ISL_445280
 2020-03-17 2020-05-15
 Chile hCoV-19/Chile/Punta_Arenas_3/2020
 ATTAAA1- C241T C3037T C14408T A23403G C25350T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_445281
 2020-03-17 2020-05-15
 Chile hCoV-19/Chile/Concepcion_1/2020
 ATTAAAGGTTTAT1- C16T C241T C3037T G10265A A12506R C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_445311
 2020-03-17 2020-05-15
 Chile hCoV-19/Chile/Santiago_32/2020
 ATTAAA1- C241T C3037T C14408T C15324T A23403G A25592R ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_445312
 2020-03-17 2020-05-15
 Chile hCoV-19/Chile/Santiago_33/2020
 ATTAAAGGTTTAT1- C241T C3037T A12506R C14408T A20268G A23403G CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_445313
 2020-03-17 2020-05-15
 Chile hCoV-19/Chile/Santiago_34/2020
 ATTAA1GGACT C241T C3037T A12506R C14408T A20268G C21058T A23403G ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_445314
 2020-03-17 2020-05-15
 Chile hCoV-19/Chile/Santiago_35/2020
 ATTAA1-CAGT C241T C3037T G5230T C14408T A20268G A23403G TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_445316
 2020-03-17 2020-05-15
 Chile hCoV-19/Chile/Santiago_37/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T G1319A C3037T C8389T C13584T C14408T A23403G G25563T CA29838TG G29841C GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843C

EPI_ISL_445317
 2020-03-17 2020-05-15
 Chile hCoV-19/Chile/Santiago_38/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C14408T A23403G GGG28881AAC ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_445319
 2020-03-17 2020-05-15
 Chile hCoV-19/Chile/Santiago_40/2020
 AT1CC A4G C241T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_445320
 2020-03-17 2020-05-15
 Chile hCoV-19/Chile/Santiago_41/2020
 T2A A4T C241T C3037T C14408T A20268G A23403G CA29838TG GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_445321
 2020-03-17 2020-05-15
 Chile hCoV-19/Chile/Santiago_42/2020
 AT1GGTTTATGATCCTTTGCAACCTGAA A4T C241T C657Y C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_445362
 2020-03-17 2020-05-15
 Chile hCoV-19/Chile/Santiago_66/2020
 -2ACAACACAGTTTATGATCCTTTGCAACCTGAA A5GACTCATTCAAGGAGGAGTTAGATAAATATTT C241T C3037T C14408T A23403G T27299C GGG28881AAC T29148C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_445364
 2020-03-17 2020-05-15
 Chile hCoV-19/Chile/Santiago_68/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C3037T C14408T A20268G A23403G CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_447130
 2020-03-17 2020-05-16
 Belgium hCoV-19/Belgium/ULG-0190/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_447177 MT506643
 2020-03-17 2020-05-16
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20206/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_447196 MT506652
 2020-03-17 2020-05-16
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20226/2020
 C241T C1059T C3037T C14408T A23403G G25563T A27151R CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_447228 MT506650
 2020-03-17 2020-05-16
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20258/2020
 C241T C3037T C14408T C18877T A23403G G25563T

EPI_ISL_447255
 2020-03-17 2020-05-17
 Taiwan hCoV-19/Taiwan/TSGH-29/2020
 C3037T T7060G A7064G G11453T A11768T A17542C T17574G T26545G

EPI_ISL_447328
 2020-03-17 2020-05-17
 Israel hCoV-19/Israel/51140028/2020
 G1440A G2891A AAAAAAAAAAAA29892-

EPI_ISL_447408
 2020-03-17 2020-05-17
 Israel hCoV-19/Israel/2023920/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAA29892-

EPI_ISL_447409
 2020-03-17 2020-05-17
 Israel hCoV-19/Israel/2020087/2020
 C241T C1101T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_448816
 2020-03-17 2020-05-19
 United Kingdom hCoV-19/England/OXON-AF179/2020
 C241T C3037T T3100G G10097A C14408T A23403G C23731T G25947T GGG28881AAC

EPI_ISL_448818
 2020-03-17 2020-05-19
 United Kingdom hCoV-19/England/OXON-AF197/2020
 G11083T C14267T C14805T T17247C G26144T

EPI_ISL_448825
 2020-03-17 2020-05-19
 United Kingdom hCoV-19/England/OXON-AF346/2020
 C241T C3037T T3100G G10097A C14408T A23403G C23731T G25947T GGG28881AAC

EPI_ISL_450051
 2020-03-17 2020-05-19
 United States hCoV-19/USA/NY-PV09364/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C1059T C3037T C6927T C14408T A23403G G25563T TAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29775-

EPI_ISL_450052
 2020-03-17 2020-05-19
 United States hCoV-19/USA/NY-PV09367/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C1059T C3037T C14408T A23403G G25563T GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_450053
 2020-03-17 2020-05-19
 United States hCoV-19/USA/NY-PV09368/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTT1- C241T C1059T C3037T C4113T C11916T C14408T C18998T A23403G A23901T G25563T G29540A AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450054
 2020-03-17 2020-05-19
 United States hCoV-19/USA/NY-PV09369/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C619T C1059T C3037T C14408T A14912G A23403G G25563T GTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29759-

EPI_ISL_450325
 2020-03-17 2020-05-20
 India hCoV-19/India/CCMB_NIV5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A187G C241T C3037T G11083T C14408T A23403G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_450469 MT499195
 2020-03-17 2020-05-21
 United States SARS-CoV-2/human/USA/CA-CZB-1220/2020
 ATTAAAG1- C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_450474 MT499200
 2020-03-17 2020-05-21
 United States SARS-CoV-2/human/USA/CA-CZB-1225/2020
 ATTA1- C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_450477 MT499203
 2020-03-17 2020-05-21
 United States SARS-CoV-2/human/USA/CA-CZB-1228/2020
 C2676T C8782T A22606T T28144C G28878A G29742A

EPI_ISL_450478 MT499204
 2020-03-17 2020-05-21
 United States SARS-CoV-2/human/USA/CA-CZB-1229/2020
 C241T C1059T C3037T C14408T C17104T A23403G G25563T

EPI_ISL_450479 MT499205
 2020-03-17 2020-05-21
 United States SARS-CoV-2/human/USA/CA-CZB-1230/2020
 C241T C1059T C3037T C6258T C14408T A23403G G25563T C29253T

EPI_ISL_450480 MT499206
 2020-03-17 2020-05-21
 United States SARS-CoV-2/human/USA/CA-CZB-1231/2020
 C6312A G11083T C13730T C23929T C28311T

EPI_ISL_450610
 2020-03-17 2020-05-21
 United States hCoV-19/USA/MI-MDHHS-SC20331/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C14408T A23403G G25563T C27960T TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_450799 MT507276
 2020-03-17 2020-05-22
 Jamaica SARS-CoV-2/human/JAM/JM-CDC-7286/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27213T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_450873
 2020-03-17 2020-05-22
 Brazil hCoV-19/Brazil/AP161167-IEC/2020
 C241T C3037T C14408T A23403G T27299C GGG28881AAC T29148C

EPI_ISL_451132
 2020-03-17 2020-05-23
 Australia hCoV-19/Australia/SAP115/2020
 ATTAA1- A1079C G1397A T7225C C9319T G11083T C19862T C22120T T27384C T28688C G29742T

EPI_ISL_452119 MT512447
 2020-03-17 2020-05-26
 United States SARS-CoV-2/human/USA/VI-CDC-3588/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_452298
 2020-03-17 2020-05-27
 United States hCoV-19/USA/MI-MDHHS-SC20424/2020
 A1515G C9223T G11083T C12132T C14805T T17247C T23335A G26144T T28306Y C28732Y

EPI_ISL_452319
 2020-03-17 2020-05-27
 United States hCoV-19/USA/MI-MDHHS-SC20445/2020
 C241T C1059T C3037T C14408T A23403G G25563T T28426Y

EPI_ISL_452321
 2020-03-17 2020-05-27
 United States hCoV-19/USA/MI-MDHHS-SC20447/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAA29890-

EPI_ISL_452324
 2020-03-17 2020-05-27
 United States hCoV-19/USA/MI-MDHHS-SC20450/2020
 C241T C1059T C3037T G3443R C14408T A23403G G25563T

EPI_ISL_452508
 2020-03-17 2020-05-27
 Spain hCoV-19/Spain/COV001393/2020
 G1820R C8782T C10335T G11083T C21846T C26088T C27600Y T28144C

EPI_ISL_453825
 2020-03-17 2020-05-28
 Portugal hCoV-19/Portugal/PT0109/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C3140T C14408T A23403G G24077T C27769T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454051
 2020-03-17 2020-05-28
 Portugal hCoV-19/Portugal/PT0335/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C10543T C14408T A23403G GGG28881AAC A29396G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454055
 2020-03-17 2020-05-28
 Portugal hCoV-19/Portugal/PT0339/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3140T C14408T A23403G G24077T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454059
 2020-03-17 2020-05-28
 Portugal hCoV-19/Portugal/PT0343/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T G16558T A23403G C23603T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454064
 2020-03-17 2020-05-28
 Portugal hCoV-19/Portugal/PT0348/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454127
 2020-03-17 2020-05-28
 Portugal hCoV-19/Portugal/PT0403/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T G4201T C14408T A23403G G26172A C26527T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454226
 2020-03-17 2020-05-28
 Portugal hCoV-19/Portugal/PT0502/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- A2480G C2558T G11083T C14805T C18646T G26144T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454227
 2020-03-17 2020-05-28
 Portugal hCoV-19/Portugal/PT0503/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T G20953A A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454228
 2020-03-17 2020-05-28
 Portugal hCoV-19/Portugal/PT0504/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454338
 2020-03-17 2020-05-28
 Portugal hCoV-19/Portugal/PT0615/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G T28678C GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454339
 2020-03-17 2020-05-28
 Portugal hCoV-19/Portugal/PT0616/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G T28678C GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454340
 2020-03-17 2020-05-28
 Portugal hCoV-19/Portugal/PT0617/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C2704T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454341
 2020-03-17 2020-05-28
 Portugal hCoV-19/Portugal/PT0618/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G246T C3037T C14408T A23403G G24098T C25714T G27703T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454954
 2020-03-17 2020-05-29
 China hCoV-19/Wuhan/HB-WH4-204/2020
 

EPI_ISL_454972
 2020-03-17 2020-05-29
 China hCoV-19/Wuhan/HB-WH5-227/2020
 A18625G C24034T G28077C T28144C

EPI_ISL_454977
 2020-03-17 2020-05-29
 China hCoV-19/Wuhan/HB-WH5-236/2020
 G26144T

EPI_ISL_455283
 2020-03-17 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_481/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C478T C3037T T12247C G12550A C14408T A20268G C20740A A23403G C29548A G29734C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455388
 2020-03-17 2020-05-29
 China hCoV-19/Wuhan/HB-WH4-202/2020
 C379A C26447G T28144C T28250G A28254-

EPI_ISL_455392
 2020-03-17 2020-05-29
 China hCoV-19/Wuhan/HB-WH5-230/2020
 A8621T T14633C TG14865- TGGATT25394- T28144C T28250G A28254- G29742T A29776T

EPI_ISL_455451
 2020-03-17 2020-05-29
 Poland hCoV-19/Poland/PL_P38/2020
 C241T C3037T G9658T C14408T A20268G A23403G G29734C

EPI_ISL_455586
 2020-03-17 2020-06-01
 Thailand hCoV-19/Thailand/Bangkok_2972/2020
 C629T T3931C G11083T C14805T G26144T G28857T AAAAAAAAAAAA29892-

EPI_ISL_455716
 2020-03-17 2020-06-01
 Vietnam hCoV-19/Vietnam/VNHN_979/2020
 C241T TGGTCATGTTATGGT508- C1059T T1666C C3037T C14408T A23403G G25563T

EPI_ISL_455717
 2020-03-17 2020-06-01
 Vietnam hCoV-19/Vietnam/VNHN_1072/2020
 G174A C241T TGGTCATGTTATGGT508- C1059T T1666C C3037T C14408T A23403G G25563T

EPI_ISL_456161
 2020-03-17 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR0514/2020
 C241T C1059T C3037T C14408T A23403G

EPI_ISL_456172
 2020-03-17 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR0987/2020
 T490A C3177T C8782T T18736C C19386T G19684T C24034T T26729C C27635T G28077C T28144C A29700G

EPI_ISL_456174
 2020-03-17 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR0989/2020
 T490A C3177T C8782T G19684T C24034T A29700G

EPI_ISL_456175
 2020-03-17 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR0990/2020
 C6026T C6336T A10985G

EPI_ISL_456177
 2020-03-17 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR0994/2020
 G1505A G11083T G13627T C14805T C15540T G26144T A28338G

EPI_ISL_456178
 2020-03-17 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR0995/2020
 T514C C22591T

EPI_ISL_457140
 2020-03-17 2020-06-02
 United Kingdom hCoV-19/England/EXET-135B97/2020
 A2480G C2558T G11083T C14805T G26144T

EPI_ISL_457752 MT646096
 2020-03-17 2020-06-02
 United States SARS-CoV-2/human/USA/MD-HP00029/2020
 C241T C2416T C3037T C9891Y C14408T A23403G G25563T G26233T

EPI_ISL_457791 MT646064
 2020-03-17 2020-06-02
 United States SARS-CoV-2/human/USA/MD-HP00045/2020
 C241T C1059T C2110T C3037T C14408T A23403G G25563T

EPI_ISL_457939
 2020-03-17 2020-06-02
 Oman hCoV-19/Oman/RESP-20-2181/2020
 G1397A T28688C G29742T

EPI_ISL_457975
 2020-03-17 2020-06-02
 Oman hCoV-19/Oman/RESP-20-2523/2020
 C241T C3037T C14408T A20268G A23403G

EPI_ISL_457976
 2020-03-17 2020-06-02
 Oman hCoV-19/Oman/RESP-20-2631/2020
 C8782T C9223T G11230T T28144C G28878A G29742A

EPI_ISL_458000 MT549878
 2020-03-17 2020-06-01
 Kenya SARS-CoV-2/human/KEN/D6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCT1- C1191T A2480G C2558T G11083T C14805T G26144T T26665C TACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29748C

EPI_ISL_459858
 2020-03-17 2020-06-04
 Chile hCoV-19/Chile/LaFlorida-26639/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C203T C8782T T9477A C14805T A22151G G25979T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_459862
 2020-03-17 2020-06-04
 Chile hCoV-19/Chile/Santiago-25669/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_460063
 2020-03-17 2020-06-05
 United States hCoV-19/USA/MN-MDH-74/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C8782T C17747T A17858G C18060T A24694T T28144C G28812T G28985T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_460065
 2020-03-17 2020-06-05
 United States hCoV-19/USA/MN-MDH-78/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C1059T C3037T C14408T A23403G G24368T G25563T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_460666
 2020-03-17 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_493/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T13006C C14408T G20433T A23403G G25563T C25688T G29751T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460720
 2020-03-17 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_552/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460818
 2020-03-17 2020-06-06
 Netherlands hCoV-19/Netherlands/Overijssel_29/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T13006C C14408T C15714T T17979C A23403G G25563T C25688T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_462178
 2020-03-17 2020-06-08
 Belgium hCoV-19/Belgium/HN-0317324/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462179
 2020-03-17 2020-06-08
 Belgium hCoV-19/Belgium/WVM-0317325/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4320T C14408T C21590T A23403G G25563T C25688T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462180
 2020-03-17 2020-06-08
 Belgium hCoV-19/Belgium/JBE-0317326/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2113T C3037T C4999T C7765T C14408T C17690T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462181
 2020-03-17 2020-06-08
 Belgium hCoV-19/Belgium/HMM-0317327/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T C15738T C16393T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462292
 2020-03-17 2020-06-08
 Singapore hCoV-19/Singapore/174/2020
 C8782T T25394C C26088T T28144C AAAAAAAAAAAA29892-

EPI_ISL_462401
 2020-03-17 2020-06-08
 Singapore hCoV-19/Singapore/283/2020
 C21260Y T23487G G29425S GA29427KR AAAAAAAAAAAA29892-

EPI_ISL_462409
 2020-03-17 2020-06-08
 Singapore hCoV-19/Singapore/291/2020
 C241T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_462429
 2020-03-17 2020-06-08
 Singapore hCoV-19/Singapore/311/2020
 C241T C3037T C3373A C11195T C14408T C15216T T20114K A23403G GGG28881AAC G29425S GA29427KR AAAAAAAAAAAA29892-

EPI_ISL_462432
 2020-03-17 2020-06-08
 Singapore hCoV-19/Singapore/314/2020
 C241T C3037T C14408T A23403G C26461Y GGG28881AAC G29266K AAAAAAAAAAAA29892-

EPI_ISL_462450
 2020-03-17 2020-06-08
 Bosnia and Herzegovina hCoV-19/Bosnia and Herzegovina/ChVir7340/2020
 ATTAAAGGTTTATAC1- G11083T C14805T T17247C T25733C G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_463984
 2020-03-17 2020-06-11
 Canada hCoV-19/Canada/ON_MU-S40/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C3037T G4201T C14408T C22564Y A23403G C26527T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_463989
 2020-03-17 2020-06-11
 Canada hCoV-19/Canada/ON_MU-S51/2020
 ATTAAA1- C241T C1059T C3037T C14408T A23403G G25563T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_464092 MT590598
 2020-03-17 2020-06-11
 Taiwan SARS-CoV-2/human/TWN/CGMH-CGU-28/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3177T C7609T C21772T AAAAAAAAAA29894-

EPI_ISL_464112
 2020-03-17 2020-06-11
 South Africa hCoV-19/SouthAfrica/Tygerberg_01/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T A5209G C14408T A23403G A24862G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_464116
 2020-03-17 2020-06-11
 South Africa hCoV-19/SouthAfrica/Tygerberg_05/2020
 C241T C14408T C15952T A23403G A24862G

EPI_ISL_465788
 2020-03-17 2020-06-11
 United Kingdom hCoV-19/England/20124029204/2020
 C241T C3037T C14408T G21724T A23403G GGG28881AAC

EPI_ISL_467092
 2020-03-17 2020-06-12
 Spain hCoV-19/Spain/COV001464/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T C29870A

EPI_ISL_467095
 2020-03-17 2020-06-12
 Spain hCoV-19/Spain/COV001434/2020
 C8782T T9477A C12970T C14805T G25979T T28144C C28657T C28863T C29870A

EPI_ISL_467101
 2020-03-17 2020-06-12
 Spain hCoV-19/Spain/COV001467/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T C29870A

EPI_ISL_467106
 2020-03-17 2020-06-12
 Spain hCoV-19/Spain/COV001522/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T

EPI_ISL_467108
 2020-03-17 2020-06-12
 Spain hCoV-19/Spain/COV001438/2020
 C8782T T9477A C14805T C21614T G25979T C26198T T28144C C28657T C28863T

EPI_ISL_467115
 2020-03-17 2020-06-12
 Spain hCoV-19/Spain/COV001443/2020
 G558K C1997T C8782T T9477A C14805T G25979T C26256A T28144C C28657T C28863T

EPI_ISL_467117
 2020-03-17 2020-06-12
 Spain hCoV-19/Spain/COV001468/2020
 G1148T C8782T T9477A T12175G C14805T G25979T T28144C C28657T C28863T C29870A

EPI_ISL_467122
 2020-03-17 2020-06-12
 Spain hCoV-19/Spain/COV001512/2020
 C8782T T9477A C14805T G17392A G25979T T28144C C28657T C28863T

EPI_ISL_467123
 2020-03-17 2020-06-12
 Spain hCoV-19/Spain/COV001523/2020
 C241T C1059T C3037T T13006C C14408T G17302T G22131A A23403G G25563T C25688T C25693T C29870A

EPI_ISL_467127
 2020-03-17 2020-06-12
 Spain hCoV-19/Spain/COV001465/2020
 C8782T T9477A C14805T G25979T G28109T T28144C C28657T C28863T C29870A

EPI_ISL_467130
 2020-03-17 2020-06-12
 Spain hCoV-19/Spain/COV001436/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T

EPI_ISL_467145
 2020-03-17 2020-06-12
 Spain hCoV-19/Spain/COV001455/2020
 C241T C3037T C6354T C14408T C19186T A20268G C21219T A23403G G29734C

EPI_ISL_467148
 2020-03-17 2020-06-12
 Spain hCoV-19/Spain/COV001445/2020
 C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_467154
 2020-03-17 2020-06-12
 Spain hCoV-19/Spain/COV001452/2020
 G5743T C8782T T9477A C14805T C20544Y G25979T T28144C C28657T C28863T C29870A

EPI_ISL_467155
 2020-03-17 2020-06-12
 Spain hCoV-19/Spain/COV001470/2020
 C8782T T9477A C14805T A23586G G25979T T28144C C28657T T28705C C28863T

EPI_ISL_467166
 2020-03-17 2020-06-12
 Spain hCoV-19/Spain/COV001484/2020
 C8782T T9477A C12970T C14805T G25979T T28144C C28657T C28863T C29870A

EPI_ISL_467167
 2020-03-17 2020-06-12
 Spain hCoV-19/Spain/COV001525/2020
 C241T C3037T C14408T A20268G A23403G G25951A C28854T

EPI_ISL_467170
 2020-03-17 2020-06-12
 Spain hCoV-19/Spain/COV001505/2020
 C8782T T9477A C14805T A23586G G25979T T28144C C28657T T28705C C28863T C29870A

EPI_ISL_467173
 2020-03-17 2020-06-12
 Spain hCoV-19/Spain/COV001437/2020
 C7528Y C8782T T9477A C14805T C16466Y C22227T G25979T T28144C C28657T C28863T

EPI_ISL_467420
 2020-03-17 2020-06-13
 United States hCoV-19/USA/NY-NYUMC927/2020
 C241T A263G C1191T C3037T C14408T A23403G

EPI_ISL_467611
 2020-03-17 2020-06-14
 United States hCoV-19/USA/NM-UNM-00030/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_468392 MT628128
 2020-03-17 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1418/2020
 AT1- C241T C379A C1059T C3037T C14408T A23403G G25012A G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_468393 MT628129
 2020-03-17 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1420/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C379A C1059T C3037T C14408T A23403G G25012A G25563T C29769Y

EPI_ISL_468737
 2020-03-17 2020-06-17
 Belgium hCoV-19/Belgium/UGent-89/2020
 C11074T G11083T C13119T C14805T T17247C G26144T

EPI_ISL_468743
 2020-03-17 2020-06-17
 Belgium hCoV-19/Belgium/UGent-95/2020
 C241T C3037T C14408T C15324T A23403G C28290T

EPI_ISL_468744
 2020-03-17 2020-06-17
 Belgium hCoV-19/Belgium/UGent-96/2020
 C241T C3037T C14408T T19839C A23403G C24099T GGG28881AAC

EPI_ISL_468745
 2020-03-17 2020-06-17
 Belgium hCoV-19/Belgium/UGent-97/2020
 C241T C3037T C5497T C14120T C14408T C15324T A23403G

EPI_ISL_468746
 2020-03-17 2020-06-17
 Belgium hCoV-19/Belgium/UGent-98/2020
 C241T C3037T G4255T C14408T A23403G A26530G

EPI_ISL_468840
 2020-03-17 2020-06-17
 Spain hCoV-19/Spain/Zaragoza2387/2020
 C241T C3037T G8003R C14408T A20268G C22323T A23403G

EPI_ISL_471205
 2020-03-17 2020-06-19
 United States hCoV-19/USA/WI-WSLH-200040/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471207
 2020-03-17 2020-06-19
 United States hCoV-19/USA/WI-WSLH-200042/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16848T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471252
 2020-03-17 2020-06-19
 United States hCoV-19/USA/WI-WSLH-200088/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17747T A17858G C18060T A24694T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471553
 2020-03-17 2020-06-22
 Czech Republic hCoV-19/Czech Republic/NRL_5186/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471555
 2020-03-17 2020-06-22
 Czech Republic hCoV-19/Czech Republic/NRL_5184/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C14408T C16289T A23403G G25563T G26233T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_474862
 2020-03-17 2020-06-23
 Spain hCoV-19/Spain/Granada-COV002875/2020
 C241T C3037T C14408T T22831Y A23403G C24381Y GGG28881AAC C29870A

EPI_ISL_474868
 2020-03-17 2020-06-23
 Spain hCoV-19/Spain/Granada-COV002891/2020
 C241T C3037T C11074T C14408T C18555Y A23403G G23856T C25162T GGG28881AAC

EPI_ISL_474936
 2020-03-17 2020-06-23
 Spain hCoV-19/Spain/Otura-COV002885/2020
 C241T C3037T C14408T A20268G A23403G

EPI_ISL_475060
 2020-03-17 2020-06-23
 Belgium hCoV-19/Belgium/UGent-100/2020
 C241T A1269G C3037T C14408T A20268G A23403G

EPI_ISL_475572
 2020-03-17 2020-06-23
 United Kingdom hCoV-19/England/IC19/2020
 C241T C2416T C3037T C6504T C11620T C14408T C14786T G20578T A23403G G25563T C26907T

EPI_ISL_475814
 2020-03-17 2020-06-25
 Austria hCoV-19/Austria/CeMM0367/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3478K A11839G C14408T C16575T T19839C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475905
 2020-03-17 2020-06-25
 Austria hCoV-19/Austria/CeMM0554/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475962
 2020-03-17 2020-06-25
 Singapore hCoV-19/Singapore/431/2020
 C241T C3037T C14408T A23403G GGG28881AAC G29425S GA29427KR C29738A AAAAAAAAAAAA29892-

EPI_ISL_476803
 2020-03-17 2020-06-26
 China hCoV-19/Hong Kong/VB20050000/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C9857T G11083T C14408T A23403G CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_476823
 2020-03-17 2020-06-26
 Benin hCoV-19/Benin/260/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T2339A C3037T C9891T C14408T C18377T G21830C A23403G G25563T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858W

EPI_ISL_476824
 2020-03-17 2020-06-26
 Benin hCoV-19/Benin/501/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T13006C C14408T A23403G G25563T C25688T TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_476833
 2020-03-17 2020-06-26
 Benin hCoV-19/Benin/461/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T G11230T T28144C G28167A G28878A G29742A TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_476834
 2020-03-17 2020-06-26
 Benin hCoV-19/Benin/314/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C679T C3037T T4463C A9204G C9891Y C14408Y C15324T A16034R C16806Y A20597R A23403G G25563T C25688T T25807Y TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_476905 MT827809
 2020-03-17 2020-06-27
 United States SARS-CoV-2/human/USA/WA-UW-1274/2020
 ATTAAAGGTTTAT1- C36T C8782T C17747T A17858G C18060T T28144C

EPI_ISL_477685
 2020-03-17 2020-06-29
 United States hCoV-19/USA/WA-UW-1282/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C36T C241T C313T C2252A C3037T A11348G C14408T A23403G GGG28881AAC AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_477824
 2020-03-17 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR157/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C3787T C12025T C16362T TA19355- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479664 MT679198
 2020-03-17 2020-06-29
 United States SARS-CoV-2/human/USA/NYU-VC-008/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T A4550G C14408T A23403G G25563T AAAAAAAAA29895-

EPI_ISL_479882
 2020-03-17 2020-07-01
 Japan hCoV-19/Japan/PG-0173/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C13176T C14408T A23403G GGG28881AAC TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_479938
 2020-03-17 2020-07-01
 Japan hCoV-19/Japan/PG-0253/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C1059T C1063T C3037T C3737T C4551T A12121G C14408T T18351C A23403G G25563T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_479939
 2020-03-17 2020-07-01
 Japan hCoV-19/Japan/PG-0254/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- A895G C2942T G4390T C6037T C8782T C9598T G20134T G24047A T28144C ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_479940
 2020-03-17 2020-07-01
 Japan hCoV-19/Japan/PG-0255/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- A895G C2942T G4390T C6037T C8782T C9598T G20134T G24047A T28144C ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480383 MT772550
 2020-03-17 2020-07-01
 United States SARS-CoV-2/human/USA/WI-UW-401/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A253G G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480384 MT772551
 2020-03-17 2020-07-01
 United States SARS-CoV-2/human/USA/WI-UW-402/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480385 MT772552
 2020-03-17 2020-07-01
 United States SARS-CoV-2/human/USA/WI-UW-403/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480958
 2020-03-17 2020-07-02
 Spain hCoV-19/Spain/Donostia-San_Sebastian_COV003259/2020
 ATG1605- C9811T A26748G

EPI_ISL_482471
 2020-03-17 2020-07-03
 Canada hCoV-19/Canada/NB_54/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T8767C C8782T T10771C C17747T A17858G C18060T T28144C ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_482476
 2020-03-17 2020-07-03
 Canada hCoV-19/Canada/NS_60/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G11083T C14805T G26144T C26781T ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_482579
 2020-03-17 2020-07-04
 China hCoV-19/Hangzhou/HZCDC6948/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A2480G C2558T G11083T C14805T G26144T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_482677
 2020-03-17 2020-07-05
 Singapore hCoV-19/Singapore/367/2020
 C241T C1059T C3037T C14408T G15760A A23403G G25563T

EPI_ISL_483544
 2020-03-17 2020-07-07
 Bahrain hCoV-19/Bahrein/BAH-03/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C884T G1397A G8653T G11083T C25587A T28688C G29742T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_483637
 2020-03-17 2020-07-08
 Hungary hCoV-19/Hungary/SRC_isolate_2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G G29266T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_483704
 2020-03-17 2020-07-08
 Israel hCoV-19/Israel/n14269/2020
 C241T C3037T C14408T C17125T C18877T A23403G G25563T

EPI_ISL_483708
 2020-03-17 2020-07-08
 Israel hCoV-19/Israel/n14268/2020
 G1976T C4540T C8782T A9079G T9477A C14805T G19060T G20238T A23631T G25979T T28144C C28311T G28328A C28657T C28863T

EPI_ISL_483715
 2020-03-17 2020-07-08
 Israel hCoV-19/Israel/n14270/2020
 C241T C3037T G7675T C10450T C14408T C18877T A23403G G25563T

EPI_ISL_483937
 2020-03-17 2020-07-08
 United Kingdom hCoV-19/England/GSTT-265D2D5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_483945
 2020-03-17 2020-07-08
 United Kingdom hCoV-19/England/GSTT-265D35A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T1368C C4158T C6990T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_483947
 2020-03-17 2020-07-08
 United Kingdom hCoV-19/England/GSTT-265D378/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G9923A G11083T C14805T G23868T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485860 MT739466 MT913079
 2020-03-17 2020-07-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0559/2020
 AT1- C241T C2416T C3037T C10712T C14408T A23403G G25563T

EPI_ISL_485861 MT739467 MT913080
 2020-03-17 2020-07-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0561/2020
 ATTAAAGGTTT1- C241T C1059T C3037T G11083T C14408T A23403G G25563T

EPI_ISL_485862 MT739468 MT913081
 2020-03-17 2020-07-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0563/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2416T C3037T T5338C C10712T C14408T A23403G G25563T C29870A

EPI_ISL_485867 MT739473 MT913086
 2020-03-17 2020-07-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0569/2020
 ATTAAAGGTT1- C241T C1059T C3037T A3409G C10319T C14408T A23403G CGATAC25493- G25563T C27964T

EPI_ISL_485868 MT739474 MT913087
 2020-03-17 2020-07-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0570/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C3037T C14408T A20268G A23403G G29734C

EPI_ISL_485869 MT739475 MT913088
 2020-03-17 2020-07-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0571/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_485870 MT739476 MT913089
 2020-03-17 2020-07-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0572/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C5144T C6312A G11083T C13730T C23929T C25669T C28311T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_486423
 2020-03-17 2020-07-10
 Latvia hCoV-19/Latvia/040/2020
 C1912T

EPI_ISL_486650
 2020-03-17 2020-07-10
 Italy hCoV-19/Italy/Hsacco-13/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G G27604T TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_488588
 2020-03-17 2020-07-14
 United Kingdom hCoV-19/England/NORT-2842EE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C5884T C14408T A23403G T25202K G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488744
 2020-03-17 2020-07-14
 United Kingdom hCoV-19/England/NORT-2842FD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G C9223T G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488766
 2020-03-17 2020-07-14
 United Kingdom hCoV-19/England/NORT-28157F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1912T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488774
 2020-03-17 2020-07-14
 United Kingdom hCoV-19/England/NORT-281621/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1350T A2480G C2558T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488792
 2020-03-17 2020-07-14
 United Kingdom hCoV-19/England/NORT-281612/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG518- A1515G C2939T C3140T C6738T C9223T G11083T C14805T T16154C T17247C G18040A G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488809
 2020-03-17 2020-07-14
 United Kingdom hCoV-19/England/NORT-281603/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C20270T A29683T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_490997
 2020-03-17 2020-07-15
 United States hCoV-19/USA/LA-UW-MAYO81/2020
 A1G A4D C241T GTCATGTTA510- C1059T C3037T C10319T C14408T T16047C A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAAA29884-

EPI_ISL_492606
 2020-03-17 2020-07-20
 United Kingdom hCoV-19/England/BRIS-130BE7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C14408T C14786T G20578T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493199
 2020-03-17 2020-07-21
 Taiwan hCoV-19/Taiwan/NCKUH-003/2020
 ATTAAAGG1- C241T C3037T C14408T C15240T G16647T A20268G A23403G G29734C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873C

EPI_ISL_496482
 2020-03-17 2020-07-24
 Italy hCoV-19/Italy/NegrarVR_9/2020
 A1GGGGGTA C241T C3037T C14408T G17722T A23403G A29872T A29878G A29889T A29898G -29904AGATAAAAGAAATAAAAAAAAAAGACACAAGAAAATAGATAGAGGAAAAAGAAAAAATGAAAAAAACAGG

EPI_ISL_497799
 2020-03-17 2020-07-25
 China hCoV-19/Hong Kong/HKU-200723-032/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1427T C3037T C6195T C14408T T17568C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498032
 2020-03-17 2020-07-26
 South Korea hCoV-19/Korea/KCDC2131/2020
 C241T C313T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_498033
 2020-03-17 2020-07-26
 South Korea hCoV-19/Korea/KCDC2132/2020
 ATTAAAGGTTTATACCTTCC1- G11083T C14805T T17247C G26144T

EPI_ISL_499646
 2020-03-17 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A58F6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T G15438T A20268G A23403G G29830K

EPI_ISL_499648
 2020-03-17 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A5920/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G10097A C14408T A23403G C23731T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_499649
 2020-03-17 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A593F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G1440A G2891R G8785A

EPI_ISL_499651
 2020-03-17 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A59A8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_500511
 2020-03-17 2020-07-29
 United States hCoV-19/USA/MA-UW-MAYO41/2020
 ATTAAAGGT1- AAC34TTT C241T C1059T C3037T C6762T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_500513
 2020-03-17 2020-07-29
 United States hCoV-19/USA/GA-UW-MAYO61/2020
 T2H A31T AAC34TTT T490A C3177T C8782T C9430T T18736C T23677C C24034T T26729C C27635T G28077C T28144C A29700G -29904AAAAAAAAAAAAAAAA

EPI_ISL_500521
 2020-03-17 2020-07-29
 United States hCoV-19/USA/LA-UW-MAYO87/2020
 A1G AAC34TTT C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_500716
 2020-03-17 2020-07-29
 Turkey hCoV-19/Turkey/Pen07/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C241T C3037T C14408T CTATACATGTCTCTGGGACCAATGGTA21762- A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_501221
 2020-03-17 2020-07-31
 Malaysia hCoV-19/Malaysia/7618/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- AACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29694-

EPI_ISL_507053
 2020-03-17 2020-08-03
 United Kingdom hCoV-19/England/LOND-124D0C6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- A2480G C2558T C7279T G11083T C14805T G26144T C27208T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_508998
 2020-03-17 2020-08-04
 France hCoV-19/France/ARA10441/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCG1- C241T C2416T C3037T G8371T G11335T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_509699 MT844032
 2020-03-17 2020-08-05
 Guatemala SARS-CoV-2/human/GTM/CDC-1232/2020
 C241T C14408T A20268G A23403G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_509736 MT846440
 2020-03-17 2020-08-05
 United States SARS-CoV-2/human/USA/FL-BPHL-0678/2020
 AT1- C241T T1918C C3037T C14408T C18877T A23403G G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_510283
 2020-03-17 2020-08-06
 Spain hCoV-19/Spain/COV004044/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C8782T C17470T C26088T T28144C AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_510284
 2020-03-17 2020-08-06
 Spain hCoV-19/Spain/COV004045/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C8782T C17470T C26088T T28144C AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_510285
 2020-03-17 2020-08-06
 Spain hCoV-19/Spain/COV004046/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G4255T C6696T C14408T A20268G A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_510961
 2020-03-17 2020-08-07
 Portugal hCoV-19/Portugal/PT0702/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T C15324T A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_510962
 2020-03-17 2020-08-07
 Portugal hCoV-19/Portugal/PT0703/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T C15324T A23403G G27463T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511045
 2020-03-17 2020-08-07
 Portugal hCoV-19/Portugal/PT0786/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T G18255T G18859T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511046
 2020-03-17 2020-08-07
 Portugal hCoV-19/Portugal/PT0787/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511213
 2020-03-17 2020-08-07
 Portugal hCoV-19/Portugal/PT1252/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC G29511T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511215
 2020-03-17 2020-08-07
 Portugal hCoV-19/Portugal/PT1254/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- A2480G C2558T G11083T C14805T G26144T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511259
 2020-03-17 2020-08-07
 Portugal hCoV-19/Portugal/PT1300/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C2704T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511261
 2020-03-17 2020-08-07
 Portugal hCoV-19/Portugal/PT1302/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511264
 2020-03-17 2020-08-07
 Portugal hCoV-19/Portugal/PT1305/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C2416T C3037T A7479G C12513T C14408T C21575T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511267
 2020-03-17 2020-08-07
 Portugal hCoV-19/Portugal/PT1308/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511268
 2020-03-17 2020-08-07
 Portugal hCoV-19/Portugal/PT1309/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G246T C3037T C14408T A23403G G24098T C25714T C27335T G27703T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511271
 2020-03-17 2020-08-07
 Portugal hCoV-19/Portugal/PT1312/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC A29396G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511272
 2020-03-17 2020-08-07
 Portugal hCoV-19/Portugal/PT1313/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGA1- C241T C3037T C14408T G20238T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511274
 2020-03-17 2020-08-07
 Portugal hCoV-19/Portugal/PT1315/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G246T C3037T C14408T A23403G G24098T C25714T G27703T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511275
 2020-03-17 2020-08-07
 Portugal hCoV-19/Portugal/PT1316/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511412
 2020-03-17 2020-08-07
 Portugal hCoV-19/Portugal/PT1453/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAA1- C241T C1059T C3037T C14408T A23403G G25563T C28139T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511417
 2020-03-17 2020-08-07
 Portugal hCoV-19/Portugal/PT1458/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A20268G A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511428
 2020-03-17 2020-08-07
 Portugal hCoV-19/Portugal/PT1469/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3140T C14408T A23403G G24077T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511444
 2020-03-17 2020-08-07
 Portugal hCoV-19/Portugal/PT1485/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC A29396G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511450
 2020-03-17 2020-08-07
 Portugal hCoV-19/Portugal/PT1491/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511455
 2020-03-17 2020-08-07
 Portugal hCoV-19/Portugal/PT1496/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T T1510C C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511463
 2020-03-17 2020-08-07
 Portugal hCoV-19/Portugal/PT1504/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T G4444T A11983C C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511467
 2020-03-17 2020-08-07
 Portugal hCoV-19/Portugal/PT1508/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T T1510C C3037T C14408T A23403G GGG28881AAC C29632T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511471
 2020-03-17 2020-08-07
 Portugal hCoV-19/Portugal/PT1512/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T G4444T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_512654
 2020-03-17 2020-08-11
 Costa Rica hCoV-19/Costa Rica/INC-0048/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTC1- C241T C3037T C14408T C15324T A23403G CCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29835-

EPI_ISL_513443 MT886317
 2020-03-17 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0031/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATC1- C241T C1722T C3037T G11083T C14408T A23403G AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513444 MT886318
 2020-03-17 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0032/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAA1- C241T C2416T C3037T G11534A C14408T A23403G G25563T G26233T AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513457 MT886331
 2020-03-17 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0046/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGT1- C241T C3037T C14408T A23403G GGG28881AAC AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513469 MT886343
 2020-03-17 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0058/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAA1- C241T C3037T C14408T C22450T A23403G AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513474 MT886348
 2020-03-17 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0063/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAA1- C241T C2416T C3037T C14408T A23403G G25563T C25693T G26233T AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513475 MT886349
 2020-03-17 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0064/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAA1- C241T C3037T C14408T C22450T A23403G A25864G AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513512
 2020-03-17 2020-08-13
 Czech Republic hCoV-19/Czech Republic/NRL_4037/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C9448T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_514308
 2020-03-17 2020-08-16
 Israel hCoV-19/Israel/CVL-n14268/2020
 ATTA1- G1976T C4540T C8782T A9079G T9477A C14805T G19060T G20238T A23631T G25979T T28144C C28311T G28328A C28657T C28863T

EPI_ISL_514309
 2020-03-17 2020-08-16
 Israel hCoV-19/Israel/CVL-n14269/2020
 C241T C3037T C14408T C17125T C18877T A23403G G25563T

EPI_ISL_514310
 2020-03-17 2020-08-16
 Israel hCoV-19/Israel/CVL-n14270/2020
 ATTAA1- C241T C3037T G7675T C10450T C14408T C18877T A23403G G25563T

EPI_ISL_514457
 2020-03-17 2020-08-17
 United Kingdom hCoV-19/England/PORT-2D16AA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_514459
 2020-03-17 2020-08-17
 United Kingdom hCoV-19/England/PORT-2D16E6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4255T C14408T G16475A A20355G A23403G A26530G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_515308
 2020-03-17 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0021/2020
 ATT1- C241T GTT521- C8782T C14408T C17747T A17858G C18060T A25385G T28144C

EPI_ISL_515309
 2020-03-17 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0022/2020
 ATT1- C241T C3037T C14408T C18877T A23403G G25563T

EPI_ISL_515311
 2020-03-17 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0024/2020
 ATTAAA1- C241T C379A C1059T C3037T CC14407TT A23403G G25563T

EPI_ISL_516833
 2020-03-17 2020-08-24
 United Kingdom hCoV-19/England/LOND-1260713/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T1368C C6990T G11083T C14805T C23707T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516841
 2020-03-17 2020-08-24
 United Kingdom hCoV-19/England/LOND-1260133/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516922
 2020-03-17 2020-08-24
 Montenegro hCoV-19/Montenegro/ChVir-1265622002/2020
 ATTA1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_518877 MT920016
 2020-03-17 2020-08-25
 United States SARS-CoV-2/human/USA/MN-MDH-1483/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23403G A28858G GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_518881 MT920021
 2020-03-17 2020-08-25
 United States SARS-CoV-2/human/USA/MN-MDH-1488/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A20268G A23403G CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_518892 MT920032
 2020-03-17 2020-08-25
 United States SARS-CoV-2/human/USA/MN-MDH-1499/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23403G A28858G AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_521153 MT920019
 2020-03-17 2020-08-25
 United States SARS-CoV-2/human/USA/MN-MDH-1486/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C12756T C14408T A23403G A28858G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_523332
 2020-03-17 2020-08-26
 Netherlands hCoV-19/Netherlands/NB-EMC-209/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A24862G G27505A GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_524462
 2020-03-17 2020-08-28
 Brazil hCoV-19/Brazil/SP-272/2020
 ATTAAAGGTTTATACCTT1- C241T C3037T C12053T C14408T A23403G G25088T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_524471
 2020-03-17 2020-08-28
 Peru hCoV-19/Peru/JUN-INS-074/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAA1- C241T C3037T C12534T C14408T C18877T A23403G G25563T ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_524652
 2020-03-17 2020-08-28
 United Kingdom hCoV-19/England/LOND-1260C8D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G600A G1820A A2480G C2558T T8599C G11083T C14805T C24370T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524654
 2020-03-17 2020-08-28
 United Kingdom hCoV-19/England/LOND-1260CAB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C6504T C11620T C14408T C14786T G20578T A23403G G25563T C26907T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525537
 2020-03-17 2020-08-31
 France hCoV-19/France/ARA10194/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525557
 2020-03-17 2020-08-31
 Italy hCoV-19/Italy/APU-UniMI-368/2020
 AT1- C241T C3037T A10948G C14408T A23403G GGG28881AAC AATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29770-

EPI_ISL_525617
 2020-03-17 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-18631-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- G1440A G2891A C7011T G25593C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_525618
 2020-03-17 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-18637-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- G1440A G2891A G4504T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_526797
 2020-03-17 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0575/2020
 ATTA1- C241T C3037T C13335T C14408T A23403G C29002T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_526798
 2020-03-17 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0577/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2416T C3037T G4523A C10712T C14408T A23403G G25563T G29868R C29870A

EPI_ISL_526802
 2020-03-17 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0581/2020
 AT1- C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_526804
 2020-03-17 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0583/2020
 C1912T C2676T C8782T A22606T T24725G T28144C G28878A G29742A A29874T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_526805
 2020-03-17 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0584/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C14408T A23403G T27299C GGG28881AAC T29148C C29870A

EPI_ISL_528161
 2020-03-17 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42194492/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T C21846T A23403G AGAGGCGGCAGTCAAGCCTCTTCT28802- TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_528162
 2020-03-17 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42194515/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T C15324T A23403G ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_528164
 2020-03-17 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42194551/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- A187G C241T C2983T C3037T C14408T A23403G TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_528165
 2020-03-17 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42194578/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G1820A A2480G C2558T T8599C G11083T C14805T G26144T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_528166
 2020-03-17 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42194826/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- A187G C241T C2983T C3037T C14408T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528168
 2020-03-17 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42194904/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- A187G C241T C2983T C3037T C14408T A23403G CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_528169
 2020-03-17 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42194939/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T G2833T C3037T C14408T A23403G G24077T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_528171
 2020-03-17 2020-09-06
 Switzerland hCoV-19/Switzerland/AG-UHB-42195061/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T G11540T C14408T G15380T A23403G G25563T G26155T A26576G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528172
 2020-03-17 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42195083/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C14408T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528173
 2020-03-17 2020-09-06
 Switzerland hCoV-19/Switzerland/SO-UHB-42195124/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T C15324T A23403G ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_528174
 2020-03-17 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42195295/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G C25433T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528175
 2020-03-17 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42195424/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A781G G2944A C3037T C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528176
 2020-03-17 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42195425/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T T19839C A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_528178
 2020-03-17 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42195540/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G6553T C14408T A20268G A23403G C25658T TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_528179
 2020-03-17 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42195605/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G11083T C14805T C18086T G26144T G28842T TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_528180
 2020-03-17 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42195622/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T G19162T A23403G ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_528183
 2020-03-17 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42195693/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T C18395T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528185
 2020-03-17 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42195727/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T C17285T A23403G G27996T G28028T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_528186
 2020-03-17 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42195791/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T A4236G C14408T A23403G G25563T A29115T ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_528187
 2020-03-17 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42195828/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C7735T C14408T C15324T A23403G TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_528188
 2020-03-17 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42195888/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T C15324T A23403G TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_528191
 2020-03-17 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42195951/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T C15324T A23403G G28881T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528193
 2020-03-17 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42196011/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T G13201A C14408T A20268G A23403G C28854T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528194
 2020-03-17 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42196028/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T C15324T G17658T A23403G GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_528196
 2020-03-17 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42196052/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C9541T C14408T A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528198
 2020-03-17 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42196271/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T C15324T A23403G TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_528377
 2020-03-17 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-65238285/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T C15324T A23403G TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_528920
 2020-03-17 2020-09-09
 Italy hCoV-19/Italy/ABR-IZSGC-TE4891/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATC1- C241T C3037T G6884R C14408Y G22112K A23403G GGG28881AAC AGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29763-

EPI_ISL_530038
 2020-03-17 2020-09-10
 Spain hCoV-19/Spain/MD-LP109/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_534891
 2020-03-17 2020-09-14
 United Kingdom hCoV-19/England/OXON-B387D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGT1- C241T C1059T C3037T G13926T C14408T A23403G G25563T G29734C AA29880MM AA29886WW AAAAAAAAAAA29893-

EPI_ISL_535820
 2020-03-17 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00224744/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535821
 2020-03-17 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00224745/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T C1059T C3037T C14408T A23403G G25563T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_535822
 2020-03-17 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00224793/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C12741T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535824
 2020-03-17 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00224812/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535825
 2020-03-17 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00224827/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T C3096T C9170T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535826
 2020-03-17 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00224868/2020
 ATTAAAGGTT1- G11083T C14805T T16820C C18166T A21650M G26144T G28842T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_535828
 2020-03-17 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00225045/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G15732T T19143C A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535830
 2020-03-17 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00225484/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535832
 2020-03-17 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00225515/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C23191T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535833
 2020-03-17 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00225655/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535834
 2020-03-17 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00225662/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T C27406T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535835
 2020-03-17 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00225667/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535836
 2020-03-17 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00225685/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T C6026T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535839
 2020-03-17 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00225894/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4255T C8092T C14408T A15911G A20355G A23403G A26530G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535842
 2020-03-17 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00226142/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8208T G9267A T9667C C14408T A23403G G25947T G28361A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535844
 2020-03-17 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00226167/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8208T G9267A T9667C C14408T A23403G G25947T G28361A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535854
 2020-03-17 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00226938/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536533
 2020-03-17 2020-09-16
 Peru hCoV-19/Peru/LIM-INS-138/2020
 ATTAAAG1- C241T C3037T C14408T T19839C A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_536534
 2020-03-17 2020-09-16
 Peru hCoV-19/Peru/LIM-INS-139/2020
 ATT1- C241T C3037T G10265A C14408T A23403G GGG28881AAC

EPI_ISL_536543
 2020-03-17 2020-09-16
 Peru hCoV-19/Peru/LIM-INS-148/2020
 ATTAAAG1- C241T C3037T C14408T A23403G A24862G

EPI_ISL_536560
 2020-03-17 2020-09-16
 Peru hCoV-19/Peru/LIM-INS-167/2020
 ATTAAAG1- C241T C3037T C14408T C15277T A21917G A23403G A26530G

EPI_ISL_537568
 2020-03-17 2020-09-16
 United States hCoV-19/USA/CA-UCLA-36/2020
 ATTAAAGGTTTATA1- C241T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_537587
 2020-03-17 2020-09-16
 United States hCoV-19/USA/CA-UCLA-62/2020
 A1- C8782T C11866T C17747T A17858G C18060T T28144C AAAAAAA29897-

EPI_ISL_537595
 2020-03-17 2020-09-16
 United States hCoV-19/USA/CA-UCLA-70/2020
 ATTAAAGGTTT1- C241T C3037T C14408T C22450T A23403G AAAAAAAAAAA29893-

EPI_ISL_537596
 2020-03-17 2020-09-16
 United States hCoV-19/USA/CA-UCLA-71/2020
 ATTAAAGGTTTA1- C241T C3037T C14408T C22450T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_537598
 2020-03-17 2020-09-16
 United States hCoV-19/USA/CA-UCLA-77/2020
 ATTAAAGGTTTAT1- C241T C3037T C6196T C14408T A23403G T27299C GGG28881AAC T29148C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_537599
 2020-03-17 2020-09-16
 United States hCoV-19/USA/CA-UCLA-78/2020
 ATTAAAGGTTTAT1- C241T C379A C1059T C3037T C14408T A23403G G25563T C29284T C29769T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_538439
 2020-03-17 2020-09-17
 Singapore hCoV-19/Singapore/915/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538448
 2020-03-17 2020-09-17
 Singapore hCoV-19/Singapore/113nan/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A T13532C C14408T A23403G G25906T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538881
 2020-03-17 2020-09-17
 United Kingdom hCoV-19/England/LEED-2AA121/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- G2100T A8833G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541340
 2020-03-17 2020-09-22
 Brazil hCoV-19/Brazil/PR-5617/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C4927T A6412C A6466G C14408T A23403G G28396A GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_541341
 2020-03-17 2020-09-22
 Brazil hCoV-19/Brazil/PR-5618/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T G11521T C14408T A23403G G25563T GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_541942
 2020-03-17 2020-09-23
 South Korea hCoV-19/South Korea/IHC3127/2020
 ATTAAAGGTTTATACC1- C241T C3037T C14408T A20268G C20283T A23403G TGCACTGACTTGCTTTAGCACTCAATTTGCTTTTGCTTGTCCTGACGGCGTAAAACACGTCTATCAGTTACGTGCCAGATCAGTTTCACCTA27555- G29734C A29871G AAAAAAAAAAAAAAAAA29887-

EPI_ISL_547446
 2020-03-17 2020-09-24
 Netherlands hCoV-19/Aruba/AW-RIVM-10113/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C2536T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547492
 2020-03-17 2020-09-24
 Netherlands hCoV-19/Netherlands/NH-RIVM-10051/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T C17125T T17247C G26144T G27201T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_548349
 2020-03-17 2020-09-26
 United States hCoV-19/USA/CA-CZB-3638/2020
 ATTAAAGGTTTATAC1- C8782T C17747T A17858G C18060T T28144C TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_560623
 2020-03-17 2020-09-29
 France hCoV-19/France/GE8777/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G G24257T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568914
 2020-03-17 2020-10-02
 France hCoV-19/France/IHU-0650/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1059T C3037T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569256
 2020-03-17 2020-10-02
 France hCoV-19/France/IHU-0030/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1059T C3037T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

MT327745
 2020-03-17 2020-04-13
 Turkey SARS-CoV-2/human/TUR/ERAGEM-001/2020
 ATTA1- G1397A G11083T G23876A T28688C C29563T G29742T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT371573
 2020-03-17 2020-04-15
 Czech Republic SARS-CoV-2/human/CZE/CzechiaMotol_1899/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCAT1- C241T C3037T C14408T A23403G GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

MT374109
 2020-03-17 2020-04-22
 Taiwan SARS-CoV-2/human/TWN/CGMH-CGU-13/2020
 ATT1- C241T C3037T C6026T C14408T G22051T A23403G GGG28881AAC AA29902-

MT374110
 2020-03-17 2020-04-22
 Taiwan SARS-CoV-2/human/TWN/CGMH-CGU-14/2020
 ATT1- C241T C1059T C3037T C14408T A23403G G25563T

MT374111
 2020-03-17 2020-04-22
 Taiwan SARS-CoV-2/human/TWN/CGMH-CGU-15/2020
 C241T C3037T C14408T A20268G A23403G G29473A G29734C

MT374113
 2020-03-17 2020-04-22
 Taiwan SARS-CoV-2/human/TWN/CGMH-CGU-17/2020
 ATTA1- C241T C1059T C3037T T3178G C14408T G21225T A23403G G25563T

MT477837
 2020-03-17 2020-05-14
 United States SARS-CoV-2/human/USA/AK010/2020
 ATTAAAGGTTTATACC1- C241T C3037T C6504T C14408T A19403W C21530Y T21585Y A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

MT477838
 2020-03-17 2020-05-14
 United States SARS-CoV-2/human/USA/AK011/2020
 ATTAAAGGTTT1- T2266C C6027T A10236G G11083T C14805T T17247C G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

MT509466
 2020-03-17 2020-05-22
 United States SARS-CoV-2/human/USA/MD-HP00015/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT509471
 2020-03-17 2020-05-22
 United States SARS-CoV-2/human/USA/DC-HP00070/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T G25726T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT509489
 2020-03-17 2020-05-22
 United States SARS-CoV-2/human/USA/MD-HP00025/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1917T C3037T C8697T C14408T A23403G G25563T C27434T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT509492
 2020-03-17 2020-05-22
 United States SARS-CoV-2/human/USA/DC-HP00073/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T A1817G C3037T C14408T A23403G G25563T C26768T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT670018
 2020-03-17 2020-06-25
 Chile SARS-CoV-2/human/CHL/2020-26639/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C203T C8782T T9477A C14805T A22151G G25979T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706140
 2020-03-17 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-18/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3871T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706144
 2020-03-17 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-23/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17747T A17858G C18060T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706165
 2020-03-17 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-44/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G15760A C18171A A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706293
 2020-03-17 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-165/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706294
 2020-03-17 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-166/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C8782T T18736C C24034T T26729C C27635T G28077C T28144C A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT811162
 2020-03-17 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0094-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C1887T C3037T C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MW030202
 2020-03-17 2020-09-22
 Peru SARS-CoV-2/human/PER/covper062/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGT1- C241T C3037T C14408T T19839C A23403G GGG28881AAC C29675- ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

MW030203
 2020-03-17 2020-09-22
 Peru SARS-CoV-2/human/PER/covper063/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGT1- C241T C3037T G10265A C14408T A23403G GGG28881AAC C29675- ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

MW030212
 2020-03-17 2020-09-22
 Peru SARS-CoV-2/human/PER/covper072/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGT1- C241T C3037T C14408T A23403G A24862G C29675- ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

MW030227
 2020-03-17 2020-09-22
 Peru SARS-CoV-2/human/PER/covper091/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGT1- C241T C3037T C14408T C15277T A21917G A23403G A26530G C29675- ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

NMDC60013206
 2020-03-17 2020-06-01
 China hCoV-19/Guangzhou/ID046/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A25664W GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416457
 2020-03-18 2020-03-22
 United States hCoV-19/USA/CA-MG0987/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417526
 2020-03-18 2020-03-27
 Luxembourg hCoV-19/Luxembourg/LNS9371718/2020
 C241T A618G C3037T C14408T C15324T A23403G

EPI_ISL_417527
 2020-03-18 2020-03-27
 Luxembourg hCoV-19/Luxembourg/LNS2848109/2020
 C241T C3037T C5457T A6351M C14408T C15324T C18828T A23403G C29518M AAAAAAAAAAAAAAAA29888-

EPI_ISL_417528
 2020-03-18 2020-03-27
 Luxembourg hCoV-19/Luxembourg/LNS3694003/2020
 G11083T C14805T T17247C G26144T TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_417529
 2020-03-18 2020-03-27
 Luxembourg hCoV-19/Luxembourg/LNS5731562/2020
 A187G C241T C3037T A5421W G11417T C14408T A23403G C29857S GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_417530
 2020-03-18 2020-03-27
 Luxembourg hCoV-19/Luxembourg/LNS2128808/2020
 A187G C241T C3037T C14408T C16376Y A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_417531
 2020-03-18 2020-03-27
 Luxembourg hCoV-19/Luxembourg/LNS2013896/2020
 C241T C1059T C3037T C4320T C14408T A23403G G25563T C25688T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_417532
 2020-03-18 2020-03-27
 Luxembourg hCoV-19/Luxembourg/LNS8489624/2020
 C241T C1059T C3037T C4320T C12406Y C14408T A23403G G25563T C25688T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_417533
 2020-03-18 2020-03-27
 Luxembourg hCoV-19/Luxembourg/LNS6282845/2020
 A187G C241T C3037T C13665T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_417534
 2020-03-18 2020-03-27
 Luxembourg hCoV-19/Luxembourg/LNS0158952/2020
 C241T C3037T G11083T C14408T C15324T C16887T A23403G AAAAAAAAAAAAAAAAA29887-

EPI_ISL_417590
 2020-03-18 2020-03-27
 Iceland hCoV-19/Iceland/262/2020
 A1321C G11083T C14805T T17247C G26144T

EPI_ISL_417614
 2020-03-18 2020-03-27
 Iceland hCoV-19/Iceland/286/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_417615
 2020-03-18 2020-03-27
 Iceland hCoV-19/Iceland/287/2020
 C1457T C8782T T9445C T17531C C17747T A17858G C18060T G18756T A24694T T28144C

EPI_ISL_417619
 2020-03-18 2020-03-27
 Iceland hCoV-19/Iceland/290/2020
 C241T G526T C3037T C12138T C14408T A23403G GGG28881AAC

EPI_ISL_417621
 2020-03-18 2020-03-27
 Iceland hCoV-19/Iceland/292/2020
 A1321C G11083T C14805T T17247C G26144T

EPI_ISL_417622
 2020-03-18 2020-03-27
 Iceland hCoV-19/Iceland/293/2020
 C241T T658C C3037T C14408T A23403G A24862G C28629T

EPI_ISL_417625
 2020-03-18 2020-03-27
 Iceland hCoV-19/Iceland/296/2020
 C241T C3037T A10323G C14408T A20268G A23403G

EPI_ISL_417626
 2020-03-18 2020-03-27
 Iceland hCoV-19/Iceland/297/2020
 C241T C3037T A10323G C14408T A20268G A23403G

EPI_ISL_417627
 2020-03-18 2020-03-27
 Iceland hCoV-19/Iceland/298/2020
 ATG1605- C20270T A29683T

EPI_ISL_417629
 2020-03-18 2020-03-27
 Iceland hCoV-19/Iceland/300/2020
 C241T C1059T C3037T T13006C C14408T A23403G G25563T C25688T

EPI_ISL_417630
 2020-03-18 2020-03-27
 Iceland hCoV-19/Iceland/301/2020
 C241T C3037T A10323G C14408T A20268G A23403G

EPI_ISL_417632
 2020-03-18 2020-03-27
 Iceland hCoV-19/Iceland/303/2020
 C241T C3037T C3253T C14408T A23403G C24054T A25958G C27046T GGG28881AAC

EPI_ISL_417634
 2020-03-18 2020-03-27
 Iceland hCoV-19/Iceland/305/2020
 C241T C3037T A10323G C14408T A20268G A23403G

EPI_ISL_417635
 2020-03-18 2020-03-27
 Iceland hCoV-19/Iceland/306/2020
 C241T C3037T A10323G C14408T A20268G A23403G

EPI_ISL_417636
 2020-03-18 2020-03-27
 Iceland hCoV-19/Iceland/307/2020
 C241T C3037T A10323G C14408T A20268G A23403G

EPI_ISL_417637
 2020-03-18 2020-03-27
 Iceland hCoV-19/Iceland/308/2020
 C241T C2455T C3037T C10450T C14408T A23403G

EPI_ISL_417639
 2020-03-18 2020-03-27
 Iceland hCoV-19/Iceland/310/2020
 A161T C241T G2780T C3037T C14408T A20268G A23403G

EPI_ISL_417641
 2020-03-18 2020-03-27
 Iceland hCoV-19/Iceland/312/2020
 C241T C3037T C14408T A23403G A24862G

EPI_ISL_417642
 2020-03-18 2020-03-27
 Iceland hCoV-19/Iceland/313/2020
 C241T C3037T C4002T G10097A C13536T C14408T C19718T A23403G C23731T GGG28881AAC G29527T

EPI_ISL_417643
 2020-03-18 2020-03-27
 Iceland hCoV-19/Iceland/314/2020
 C241T C3037T C4002T G10097A C13536T C14408T C19718T A23403G C23731T GGG28881AAC

EPI_ISL_417644
 2020-03-18 2020-03-27
 Iceland hCoV-19/Iceland/315/2020
 C241T C3037T C14408T C16949T G18756A C19391T A23403G C27046T C28344A GGG28881AAC

EPI_ISL_417645
 2020-03-18 2020-03-27
 Iceland hCoV-19/Iceland/316/2020
 C241T C3037T A10323G C14408T A20268G A23403G

EPI_ISL_417646
 2020-03-18 2020-03-27
 Iceland hCoV-19/Iceland/317/2020
 C241T C2455T C3037T C10450T C14408T A23403G

EPI_ISL_417647
 2020-03-18 2020-03-27
 Iceland hCoV-19/Iceland/318/2020
 C241T C3037T C14408T A20268G A23403G G29734C

EPI_ISL_417649
 2020-03-18 2020-03-27
 Iceland hCoV-19/Iceland/320/2020
 ATG1605- C20270T A29683T

EPI_ISL_417650
 2020-03-18 2020-03-27
 Iceland hCoV-19/Iceland/321/2020
 C241T C3037T A10323G C14408T A20268G A23403G

EPI_ISL_417652
 2020-03-18 2020-03-27
 Iceland hCoV-19/Iceland/323/2020
 C241T C3037T C14408T A23403G A26530G G29706T

EPI_ISL_417653
 2020-03-18 2020-03-27
 Iceland hCoV-19/Iceland/324/2020
 C5142T G11083T C14805T T17247C G26144T G26620T

EPI_ISL_417654
 2020-03-18 2020-03-27
 Iceland hCoV-19/Iceland/325/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_417918 MT372480
 2020-03-18 2020-03-27
 Malaysia SARS-CoV-2/human/MYS/188407/2020
 C6310A C6312A G11083T C13730T C19524T C23929T T25473C C28311T G29862A G29864R TG29867AA C29870A

EPI_ISL_417931 MT258377
 2020-03-18 2020-03-29
 United States SARS-CoV-2/human/USA/CZB-RR057-005/2020
 ATTAAAGGTTT1- C8090T A8173R G11083T C14805T T17247C G26144T G29868R

EPI_ISL_417932 MT258378
 2020-03-18 2020-03-29
 United States SARS-CoV-2/human/USA/CZB-RR057-006/2020
 ATTA1- C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T

EPI_ISL_417933 MT258379
 2020-03-18 2020-03-29
 United States SARS-CoV-2/human/USA/CZB-RR057-007/2020
 ATTAAAGG1- C241T C3037T G6680K T10129Y C14408T A23403G GGG28881AAC G29747A

EPI_ISL_417935 MT258380
 2020-03-18 2020-03-29
 United States SARS-CoV-2/human/USA/CZB-RR057-011/2020
 ATTA1- T13Y C241T C1059T C3037T C14408T T15771Y A23403G G25563T

EPI_ISL_417937 MT258381
 2020-03-18 2020-03-29
 United States SARS-CoV-2/human/USA/CZB-RR057-013/2020
 A1- C241T C1059T C3037T T10129Y C11916T C14408T A23403R G25563T C29870M

EPI_ISL_417938 MT258382
 2020-03-18 2020-03-29
 United States SARS-CoV-2/human/USA/CZB-RR057-014/2020
 ATTAAAGGTTTATACC1- C241T A375M T617Y C1059T T2145Y C3037T G4263R C6861Y T10129Y T10906Y T11470W C14408T T15357Y T22843W A23403G T25519Y G25563T T25704W T26524D C29167T T29360K C29364M G29868R C29870M

EPI_ISL_417939 MT258383
 2020-03-18 2020-03-29
 United States SARS-CoV-2/human/USA/CZB-RR057-015/2020
 ATTAAAGGTTTAT1- C241T C1059T T1529K C3037T C14408T T15771Y G18433A A23403G G25563T G29868R

EPI_ISL_417946
 2020-03-18 2020-03-27
 Democratic Republic of the Congo hCoV-19/DRC/82/2020
 ATTAA1- C241T C3037T C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_418184
 2020-03-18 2020-03-28
 United States hCoV-19/USA/WI-GMF-00018/2020
 C241T C1059T G2518A C3037T C5183T C14408T C17766T C21302T CG21304AA A23403G G25563T

EPI_ISL_418263
 2020-03-18 2020-03-18
 Greece hCoV-19/Greece/10/2020
 C241T C3037T C14408T C14786T T18126C A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAA29885-

EPI_ISL_418264
 2020-03-18 2020-03-18
 Greece hCoV-19/Greece/12/2020
 C241T C3037T C14408T A23403G C25771A GGG28881AAC AAAAAAAAAAAAAAA29889-

EPI_ISL_418265
 2020-03-18 2020-03-18
 Greece hCoV-19/Greece/16/2020
 C8782T C9430T T9477A C14805T A22151G G25979T T28144C C28657T C28863T AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_418429
 2020-03-18 2020-03-18
 France hCoV-19/France/ARA10876/2020
 C241T C3037T C4586T A13616G C14408T C19402T C20483T A23403G G25563T G28001T C28308T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_418430
 2020-03-18 2020-03-18
 France hCoV-19/France/ARA10910/2020
 C241T C3037T C14408T A23403G G25563T G28086T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_418432
 2020-03-18 2020-03-18
 France hCoV-19/France/ARA11036/2020
 G11083T C14805T T17247C G24368T G26144T C29518T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_418696
 2020-03-18 2020-03-30
 United Kingdom hCoV-19/England/20124009602/2020
 ATG1605- C14760T C20270T T27922G A29683T

EPI_ISL_418718
 2020-03-18 2020-03-30
 United Kingdom hCoV-19/England/20124036902/2020
 A2480G C2558T G4510T G11083T C14805T A25048T G26144T

EPI_ISL_418729
 2020-03-18 2020-03-30
 United Kingdom hCoV-19/England/20124095502/2020
 C241T C842T C3037T C11572T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_418739
 2020-03-18 2020-03-30
 United Kingdom hCoV-19/England/20124101102/2020
 G284T A2480G C2558T G11083T C12068T C14805T G26144T

EPI_ISL_418749
 2020-03-18 2020-03-30
 United Kingdom hCoV-19/England/20126006802/2020
 C241T C3037T C11956T C14408T C16289T A23403G G25429T

EPI_ISL_418751
 2020-03-18 2020-03-30
 United Kingdom hCoV-19/England/20126007102/2020
 T13C C241T C2070T C3037T C5869T C14408T C16289T A23403G G25429T

EPI_ISL_418770
 2020-03-18 2020-03-30
 United Kingdom hCoV-19/England/20126096602/2020
 C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_418802
 2020-03-18 2020-03-31
 Australia hCoV-19/Australia/QLDID924/2020
 ATTAAA1- C241T C3037T C14408T A23403G C27046T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_418803
 2020-03-18 2020-03-31
 Australia hCoV-19/Australia/QLDID925/2020
 ATTAAA1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_418804
 2020-03-18 2020-03-31
 Australia hCoV-19/Australia/QLDID926/2020
 ATTAAA1- C241T C3037T C14408T C17118T G21624T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_419305 LC547527
 2020-03-18 2020-04-02
 Japan hCoV-19/Japan/P4-5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_419386
 2020-03-18 2020-04-02
 Portugal hCoV-19/Portugal/IGC00009/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G11083T C14805T G26144T GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_419387
 2020-03-18 2020-04-02
 Portugal hCoV-19/Portugal/IGC00010/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A27751T GGG28881AAC GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_419421
 2020-03-18 2020-04-02
 United Kingdom hCoV-19/Wales/PHWC-244FB/2020
 ATTAAAGGTTTA1- G1440R A2480R C2558Y G2891R G11083K C14805Y C25669Y G26144K G28851K G29742R

EPI_ISL_419438
 2020-03-18 2020-04-02
 United Kingdom hCoV-19/Wales/PHWC-2469B/2020
 ATTA1- C241T C3037Y C14408T C14805Y A23403G G25979K T28144Y C28863Y GGG28881RRS AAAAAAAAA29895-

EPI_ISL_419443
 2020-03-18 2020-04-02
 United Kingdom hCoV-19/Wales/PHWC-246E6/2020
 ATTA1- C241T C3037T C14408T A20268G A23403G C24240T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_419696
 2020-03-18 2020-04-03
 United States hCoV-19/USA/NY-NYUMC35/2020
 C2676T T6329C C8782T A22606T T28144C G28878A G29742A

EPI_ISL_419697
 2020-03-18 2020-04-03
 United States hCoV-19/USA/NY-NYUMC36/2020
 G11083T C14805T T17247C G26144T

EPI_ISL_419698
 2020-03-18 2020-04-03
 United States hCoV-19/USA/NY-NYUMC37/2020
 C2676T C8782T A22606T T28144C G28878A G29742A

EPI_ISL_419700
 2020-03-18 2020-04-03
 United States hCoV-19/USA/NY-NYUMC39/2020
 C241T C1059T C3037T C11916T G13900T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_419702
 2020-03-18 2020-04-03
 United States hCoV-19/USA/NY-NYUMC41/2020
 C241T AAGTCATTT686- C1059T G2808A C3037T C14408T A23403G G25563T A26433G

EPI_ISL_419703
 2020-03-18 2020-04-03
 United States hCoV-19/USA/NY-NYUMC42/2020
 C241T C1059T C3037T C14408T C16260T A23403G G25088T G25563T C28821A

EPI_ISL_419704
 2020-03-18 2020-04-03
 United States hCoV-19/USA/NY-NYUMC43/2020
 C241T C1059T C3037T C14408T C17746T A23403G C23453T G25563T

EPI_ISL_419705
 2020-03-18 2020-04-03
 United States hCoV-19/USA/NY-NYUMC44/2020
 C241T C1059T C1917T C3037T C10138T C14408T A23403G C23893T G25563T

EPI_ISL_419714 MT451017
 2020-03-18 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC108/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- T490A C3177T C4400T C8782T T18736C G19684T C24034T T26729C C27635T G28077C T28144C A29700G

EPI_ISL_419715 MT451020
 2020-03-18 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC111/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C8782T C17747T A17858G C18060T A24694T T28144C

EPI_ISL_419716 MT451019
 2020-03-18 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC110/2020
 ATT1- C8782T C17747T A17858G C18060T A24694T T28144C

EPI_ISL_419717 MT451024
 2020-03-18 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC115/2020
 A1- C8782T C17747T A17858G C18060T A24694T T28144C

EPI_ISL_419718 MT451018
 2020-03-18 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC109/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_419821 MT451021
 2020-03-18 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC112/2020
 ATTAAAGGTT1- T490A C3177T C8782T T18736C G19684T C24034T T26729C C27635T G28077C T28144C A29700G

EPI_ISL_419822 MT451022
 2020-03-18 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC113/2020
 ATTAAAGGTTT1- C241T CC1059TY C2523T C3037T C14408T A23403G G25563T

EPI_ISL_419855 MT451062
 2020-03-18 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC158/2020
 A1- C241T C1059T C3037T G8102T C14408T G14712A C14877T G17193T A23403G G25563T

EPI_ISL_419856 MT451063
 2020-03-18 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC159/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C8782T C9803T C17747T A17858G C18060T A24694T T28144C

EPI_ISL_419857 MT451064
 2020-03-18 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC160/2020
 ATTAAAG1- C8782T C17747T A17858G C18060T A24694T T28144C

EPI_ISL_419859 MT451065
 2020-03-18 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC162/2020
 ATT1- C8782T C17747T A17858G C18060T A24694T T28144C

EPI_ISL_419860 MT451066
 2020-03-18 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC163/2020
 ATT1- C241T C2507T C3037T C3373A C14408T A23403G GGG28881AAC

EPI_ISL_419862 MT451068
 2020-03-18 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC165/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C8782T C17747T A17858G C18060T A24694T T28144C

EPI_ISL_419863 MT451069
 2020-03-18 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC166/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C2416T C3037T A4316G G11113T C14408T A23403G G25563T

EPI_ISL_419864 MT451070
 2020-03-18 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC167/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C379A C1059T C2595Y C3037T C14408T C22224T A23403G G25563T G27163T

EPI_ISL_419866 MT451072
 2020-03-18 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC169/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- G11083T C14805T G26144T G28842T

EPI_ISL_419867 MT451073
 2020-03-18 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC170/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C13740T C14408T C15324T C23206T A23403G A29869R

EPI_ISL_419868 MT451074
 2020-03-18 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC171/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G388T A2480G C2558T G11083T G11376T C14805T T22965C G26144T C27600T

EPI_ISL_419869 MT451075
 2020-03-18 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC172/2020
 ATTAAAGGTTTA1- A2480G C2558T G11083T G11376T C14805T G26144T C27600T

EPI_ISL_419870 MT451076
 2020-03-18 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC173/2020
 ATTAAAGGTT1- C3253T C8782T C17747T A17858G C18060T T28144C

EPI_ISL_419871 MT451077
 2020-03-18 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC174/2020
 ATTAAAGGTTT1- C241T C3037T C14408T A23403G

EPI_ISL_419872 MT451078
 2020-03-18 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC175/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A20755C C22982M A23403G G25563T C29247T

EPI_ISL_419873 MT451079
 2020-03-18 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC176/2020
 ATTAAA1- G11083T G13627T C14805T C15540T G26144T A28338G

EPI_ISL_419875 MT451081
 2020-03-18 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC178/2020
 AT1- A4T C241T C3037T C14408T A23403G T25473C T27233C GGG28881AAC

EPI_ISL_420043
 2020-03-18 2020-04-04
 France hCoV-19/France/IDF2792/2020
 C241T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_420044
 2020-03-18 2020-04-04
 France hCoV-19/France/HF2797/2020
 C241T C3037T C14408T C15324T A23403G AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_420048
 2020-03-18 2020-04-04
 France hCoV-19/France/IDF2936/2020
 C241T C1059T C3037T T13006C C14408T T21585G A23403G G25563T C25688T G27514T AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_420080
 2020-03-18 2020-04-05
 Russia hCoV-19/Russia/StPetersburg-RII3992/2020
 C241T C3037T C14408T A23403G

EPI_ISL_420081
 2020-03-18 2020-04-05
 Russia hCoV-19/Russia/StPetersburg-RII3997/2020
 C241T C1059T C3037T C14408T C21781T G21974C A23403G G25563T C29272T C29415T

EPI_ISL_420083
 2020-03-18 2020-04-05
 Taiwan hCoV-19/Taiwan/128/2020
 ATTA1- C241T C3037T C14408T C15324T A22404T A23403G TT29845GA G29862T ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_420130
 2020-03-18 2020-04-05
 Spain hCoV-19/Spain/Valencia49/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G13538R C14408T A20268G A23403G G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420131
 2020-03-18 2020-04-05
 Spain hCoV-19/Spain/Valencia50/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T17126C A20268G A23403G C27263T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420132
 2020-03-18 2020-04-05
 Spain hCoV-19/Spain/Valencia51/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- A30T C241T C3037T C14408T A20268G A23122W A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420296
 2020-03-18 2020-04-06
 United States hCoV-19/USA/NY-NYUMC45/2020
 C241T C1059T C3037T C6402T C14408T C16260T A23403G G25563T C28821A

EPI_ISL_420297
 2020-03-18 2020-04-06
 United States hCoV-19/USA/NY-NYUMC46/2020
 C241T C1059T C3037T C4113T C11916T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_420299
 2020-03-18 2020-04-06
 United States hCoV-19/USA/NY-NYUMC48/2020
 C241T C1059T C3037T C10078T C14408T A23403G G25563T

EPI_ISL_420300
 2020-03-18 2020-04-06
 United States hCoV-19/USA/NY-NYUMC49/2020
 C241T C1059T C3037T C11878T C11916T C14408T A16534G C18998T A23403G G25563T G29540A

EPI_ISL_420301
 2020-03-18 2020-04-06
 United States hCoV-19/USA/NY-NYUMC50/2020
 C241T C1059T G2281T C3037T C14408T C18457T A23403G G25563T

EPI_ISL_420302
 2020-03-18 2020-04-06
 United States hCoV-19/USA/NY-NYUMC51/2020
 C241T C3037T C14408T C18877T A23403G G25563T

EPI_ISL_420312
 2020-03-18 2020-04-06
 Norway hCoV-19/Norway/2114/2020
 ATTAAA1- C241T C1059T C3037T A6133G C14408T G20419T A23403G G25563T

EPI_ISL_420358
 2020-03-18 2020-04-06
 Belgium hCoV-19/Belgium/VD-0318102/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4582T C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420359
 2020-03-18 2020-04-06
 Belgium hCoV-19/Belgium/UM-0318103/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4582T C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420360
 2020-03-18 2020-04-06
 Belgium hCoV-19/Belgium/VL-0318104/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4582T C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420362
 2020-03-18 2020-04-06
 Belgium hCoV-19/Belgium/DA-0319106/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14178T C14408T A23403G G24794T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420563
 2020-03-18 2020-04-06
 Italy hCoV-19/Italy/TE5166/2020
 ATTA1- C48M C241T C3037T C4668M C14408T A23403G A29903-

EPI_ISL_420571
 2020-03-18 2020-04-06
 United States hCoV-19/USA/NY-NYUMC56/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_420573
 2020-03-18 2020-04-06
 United States hCoV-19/USA/NY-NYUMC58/2020
 C241T AAGTCATTT686- C1059T G2808A C3037T C14408T A23403G G25563T A26433G

EPI_ISL_420575
 2020-03-18 2020-04-06
 United States hCoV-19/USA/NY-NYUMC60/2020
 C241T C1059T C3037T C6402T C14408T C16260T A23403G G25563T C28821A

EPI_ISL_420577
 2020-03-18 2020-04-06
 United States hCoV-19/USA/NY-NYUMC62/2020
 C241T G598T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_420578
 2020-03-18 2020-04-06
 United States hCoV-19/USA/NY-NYUMC63/2020
 C241T C1059T C3037T A3450G C14408T A23403G G25563T

EPI_ISL_420579
 2020-03-18 2020-04-06
 United States hCoV-19/USA/NY-NYUMC64/2020
 C241T C1059T C3037T C10449T C14408T A23403G G25563T

EPI_ISL_420580
 2020-03-18 2020-04-06
 United States hCoV-19/USA/NY-NYUMC65/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_420581
 2020-03-18 2020-04-06
 United States hCoV-19/USA/NY-NYUMC66/2020
 C241T C1059T C3037T C4113T C11916T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_420585
 2020-03-18 2020-04-06
 United States hCoV-19/USA/NY-NYUMC69/2020
 C241T C3037T C14408T A23403G

EPI_ISL_420587
 2020-03-18 2020-04-06
 United States hCoV-19/USA/NY-NYUMC71/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_420588
 2020-03-18 2020-04-06
 United States hCoV-19/USA/NY-NYUMC72/2020
 C241T C1059T C1917T C3037T C14408T G20005A A23403G G25563T

EPI_ISL_420589
 2020-03-18 2020-04-06
 United States hCoV-19/USA/NY-NYUMC73/2020
 C241T C1059T C3037T G12793T C14408T A23403G G25563T

EPI_ISL_420590
 2020-03-18 2020-04-06
 United States hCoV-19/USA/NY-NYUMC74/2020
 C241T G598T C1059T C3037T C9166T C11916T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_420591
 2020-03-18 2020-04-06
 United States hCoV-19/USA/NY-NYUMC75/2020
 C241T C3037T T9172C A10948G C14408T A23403G G26730T GGG28881AAC

EPI_ISL_420599
 2020-03-18 2020-04-06
 Argentina hCoV-19/Argentina/C1374/2020
 C241T C3037T C5392T C6449T C14408T C18877T A23403G G25563T

EPI_ISL_421275
 2020-03-18 2020-04-07
 Russia hCoV-19/Russia/Moscow_PMVL-1/2020
 C241T C3037T C4002T G10097A G11083T C13536T C14408T A23403G C23731T C27406T GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_421300
 2020-03-18 2020-04-07
 United States hCoV-19/USA/WI-UW-42/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T6814C G11083T C14408T G22203T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421310
 2020-03-18 2020-04-07
 United States hCoV-19/USA/WI-UW-52/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421311
 2020-03-18 2020-04-07
 United States hCoV-19/USA/WI-UW-53/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G15760A C18171A A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421314
 2020-03-18 2020-04-07
 United States hCoV-19/USA/WI-UW-56/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G6884T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421383 MT370883
 2020-03-18 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08425/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTT1- C241T C3037T C14408T C18877T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_421384 MT370835
 2020-03-18 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08426/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C3037T C14408T A23403G AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_421388 MT370833
 2020-03-18 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08432/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C10015T C11916T C14408T C18744T C18998T A23403G G25563T G29540A AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_421389 MT370860
 2020-03-18 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08434/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C10015T C11916T C14408T C18744T C18998T A23403G G25563T G29540A AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_421390 MT370908
 2020-03-18 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08435/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCT1- C241T C2416T C3037T C3168T C14408T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_421391 MT370836
 2020-03-18 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08436/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G G25563T G28077T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_421393 MT370848
 2020-03-18 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08441/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- TCTTAATGACAACCT1600- C8782T G12274A C13115T T25541C C26088T T28144C AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_421396 MT370856
 2020-03-18 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08445/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G G25563T T28061C AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_421402 MT370897
 2020-03-18 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08452/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_421406 MT370896
 2020-03-18 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08459/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTT1- C241T C1059T C3037T C14408T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_421407 MT370885
 2020-03-18 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08461/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C619T C1059T C3037T C14408T A14912G A23403G G25563T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_421408 MT370869
 2020-03-18 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08462/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C3037T G11083T C14408T C16293T A23403G A25575C AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_421409 MT370844
 2020-03-18 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08463/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T A2165G C3037T C4810T C14408T A23403G G25563T G29711T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_421410 MT370831
 2020-03-18 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08464/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C1059T C3037T A11101G C11916T C14408T C18998T G21830T G22468T A23403G G25563T G29540A GAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29781-

EPI_ISL_421411 MT370920
 2020-03-18 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08466/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_421412 MT370858
 2020-03-18 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08468/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T C1059T C3037T C14408T A23403G G25563T C28849T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_421413 MT370870
 2020-03-18 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08469/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_421414 MT370863
 2020-03-18 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08471/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATC1- C241T C619T C1059T C3037T C14408T A14912G C20844T A23403G G25563T T28199C AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_421416 MT370875
 2020-03-18 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08473/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_421419 MT370890
 2020-03-18 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08477/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T G2632T C3037T C14408T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_421420 MT370834
 2020-03-18 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08478/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G G25563T C28836T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_421421 MT370882
 2020-03-18 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08481/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C4113T C11916T C14408T C18998T A23403G G25563T G29540A AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_421423 MT370837
 2020-03-18 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08486/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_421424 MT370898
 2020-03-18 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08487/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCT1- C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_421428 MT370845
 2020-03-18 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08492/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_421431 MT370864
 2020-03-18 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08495/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C3037T C5140T C14408T A23403G G25644T GGG28881AAC AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_421435 MT370851
 2020-03-18 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV09000/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C241T C1059T C3037T C11003T C14408T A23403G G25563T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_421446
 2020-03-18 2020-04-08
 Portugal hCoV-19/Portugal/PT0043/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- A2480G C2558T G11083T C14805T G24095T G26144T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_421447
 2020-03-18 2020-04-08
 Portugal hCoV-19/Portugal/PT0044/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C14408T C15324T A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_421448
 2020-03-18 2020-04-08
 Portugal hCoV-19/Portugal/PT0045/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_421449
 2020-03-18 2020-04-08
 Portugal hCoV-19/Portugal/PT0046/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T G4201T C14408T A23403G C26527T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_421450
 2020-03-18 2020-04-08
 Portugal hCoV-19/Portugal/PT0047/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G A27751T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_421451
 2020-03-18 2020-04-08
 Portugal hCoV-19/Portugal/PT0048/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G A27751T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_421452
 2020-03-18 2020-04-08
 Portugal hCoV-19/Portugal/PT0049/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_421453
 2020-03-18 2020-04-08
 Portugal hCoV-19/Portugal/PT0050/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_421454
 2020-03-18 2020-04-08
 Portugal hCoV-19/Portugal/PT0051/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C14408T T19839C A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_421455
 2020-03-18 2020-04-08
 Portugal hCoV-19/Portugal/PT0052/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T T721C C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_421457
 2020-03-18 2020-04-08
 Portugal hCoV-19/Portugal/PT0054/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- G1440A G2891A TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_421482
 2020-03-18 2020-04-08
 Portugal hCoV-19/Portugal/PT0079/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T A12097G C14408T C19572T C21242T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_421483
 2020-03-18 2020-04-08
 Portugal hCoV-19/Portugal/PT0080/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C14408T C21575T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_421551
 2020-03-18 2020-04-08
 United States hCoV-19/USA/WY-WYPHL015/2020
 C241T C1059T C3037T C4633T C14408T A23403G G25563T

EPI_ISL_421577
 2020-03-18 2020-04-09
 United States hCoV-19/USA/NY-NYUMC76/2020
 C241T C1059T C3037T C4947T C14408T A23403G G25563T

EPI_ISL_421578
 2020-03-18 2020-04-09
 United States hCoV-19/USA/NY-NYUMC77/2020
 C241T C1059T C3037T C14408T C16260T A23403G G25563T C28821A

EPI_ISL_421579
 2020-03-18 2020-04-09
 United States hCoV-19/USA/NY-NYUMC78/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_421581
 2020-03-18 2020-04-09
 United States hCoV-19/USA/NY-NYUMC80/2020
 C241T C1059T C3037T C6267T C11916T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_421582
 2020-03-18 2020-04-09
 United States hCoV-19/USA/NY-NYUMC81/2020
 C241T C3037T C14408T C18877T C21952T A23403G G25563T

EPI_ISL_421583
 2020-03-18 2020-04-09
 United States hCoV-19/USA/NY-NYUMC82/2020
 C241T C1059T C3037T C4113T C11916T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_421584
 2020-03-18 2020-04-09
 United States hCoV-19/USA/NJ-NYUMC83/2020
 C241T G675C C1059T C3037T C11916T C14408T C18998T A23403G G25563T C27476T G29540A

EPI_ISL_421585
 2020-03-18 2020-04-09
 United States hCoV-19/USA/NJ-NYUMC84/2020
 C241T C1059T C3037T C13133T C14408T A23403G G25563T

EPI_ISL_421586
 2020-03-18 2020-04-09
 United States hCoV-19/USA/NY-NYUMC85/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_421587
 2020-03-18 2020-04-09
 United States hCoV-19/USA/NY-NYUMC86/2020
 C241T C1059T C3037T C3738T C14408T A23403G G25563T

EPI_ISL_421588
 2020-03-18 2020-04-09
 United States hCoV-19/USA/NY-NYUMC87/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_421589
 2020-03-18 2020-04-09
 United States hCoV-19/USA/NY-NYUMC88/2020
 C241T C1059T C3037T C7006T C8645T C14408T A20755C A23403G G25563T

EPI_ISL_421590
 2020-03-18 2020-04-09
 United States hCoV-19/USA/NY-NYUMC89/2020
 C241T C1059T C3037T G6443A C14408T A23403G G25563T G28827T

EPI_ISL_421591
 2020-03-18 2020-04-09
 United States hCoV-19/USA/NY-NYUMC90/2020
 C241T C313T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_421592
 2020-03-18 2020-04-09
 United States hCoV-19/USA/NY-NYUMC91/2020
 C241T C3037T C11289T C14408T T14619C C18877T C19938T A23403G G25563T

EPI_ISL_421627 MT370926
 2020-03-18 2020-04-09
 United States SARS-CoV-2/human/USA/NY-PV09087/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTT1- C241T C1059T C3037T C14408T A23403G G25563T C27964T GAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29766-

EPI_ISL_421630 MT370987
 2020-03-18 2020-04-09
 United States SARS-CoV-2/human/USA/NY-PV09092/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C1917T C3037T C7716T C14408T G20005A T21458C A23403G G25563T GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_421631 MT370960
 2020-03-18 2020-04-09
 United States SARS-CoV-2/human/USA/NY-PV09097/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C1059T C3037T C11916T C14408T T18519C C19220T A23403G G25563T GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_421633 MT370957
 2020-03-18 2020-04-09
 United States SARS-CoV-2/human/USA/NY-PV09099/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- G11083T C14805T T17247C G26144T GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_421706
 2020-03-18 2020-04-09
 United States hCoV-19/USA/NY-NYUMC94/2020
 C241T T986C C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_421709
 2020-03-18 2020-04-09
 United States hCoV-19/USA/NY-NYUMC97/2020
 C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29239A G29540A

EPI_ISL_421710
 2020-03-18 2020-04-09
 United States hCoV-19/USA/NY-NYUMC98/2020
 C241T C619T C1059T C3037T C14408T A14912G A23403G G25563T

EPI_ISL_421711
 2020-03-18 2020-04-09
 United States hCoV-19/USA/NY-NYUMC99/2020
 G1730A G11083T C14805T T17247C G26144T

EPI_ISL_421714
 2020-03-18 2020-04-09
 United States hCoV-19/USA/NY-NYUMC102/2020
 G443A C2676T C8782T A22606T T28144C G28878A G29742A

EPI_ISL_421716
 2020-03-18 2020-04-09
 United States hCoV-19/USA/NY-NYUMC104/2020
 C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A CGATCGAGTG29750-

EPI_ISL_421717
 2020-03-18 2020-04-09
 United States hCoV-19/USA/NY-NYUMC105/2020
 C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_421718
 2020-03-18 2020-04-09
 United States hCoV-19/USA/NJ-NYUMC106/2020
 G174T C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_421720
 2020-03-18 2020-04-09
 United States hCoV-19/USA/NY-NYUMC108/2020
 C241T C1059T C3037T C14408T C16260T A23403G G25563T C28821A

EPI_ISL_421722
 2020-03-18 2020-04-09
 United States hCoV-19/USA/NY-NYUMC110/2020
 C241T C1059T C3037T G13126A C14408T A23403G G25563T

EPI_ISL_421723
 2020-03-18 2020-04-09
 United States hCoV-19/USA/NJ-NYUMC111/2020
 C8782T C17747T A17858G C18060T A24694T T28144C

EPI_ISL_421724
 2020-03-18 2020-04-09
 United States hCoV-19/USA/NY-NYUMC112/2020
 C241T C3037T G10265A C14408T A23403G GGG28881AAC

EPI_ISL_421725
 2020-03-18 2020-04-09
 United States hCoV-19/USA/NY-NYUMC113/2020
 C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_421726
 2020-03-18 2020-04-09
 United States hCoV-19/USA/NY-NYUMC114/2020
 C241T C1059T G1125A C3037T C14408T A23403G G25563T

EPI_ISL_421727
 2020-03-18 2020-04-09
 United States hCoV-19/USA/NY-NYUMC115/2020
 C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_421728
 2020-03-18 2020-04-09
 United States hCoV-19/USA/NY-NYUMC116/2020
 C241T AAGTCATTT686- C1059T G2808A C3037T C14408T A18410G A23403G G25563T A26433G

EPI_ISL_421729
 2020-03-18 2020-04-09
 United States hCoV-19/USA/NY-NYUMC117/2020
 C241T C1059T C3037T C11916T C13517T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_421730
 2020-03-18 2020-04-09
 United States hCoV-19/USA/NY-NYUMC118/2020
 C241T C1059T C3037T C14408T G17572T G21809T A23403G G25563T

EPI_ISL_421731
 2020-03-18 2020-04-09
 United States hCoV-19/USA/NY-NYUMC119/2020
 C241T C1059T C3037T C12676T C14408T A23403G G25563T C27686T

EPI_ISL_421732
 2020-03-18 2020-04-09
 United States hCoV-19/USA/NY-NYUMC120/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_421733
 2020-03-18 2020-04-09
 United States hCoV-19/USA/NY-NYUMC121/2020
 C241T C1059T C3037T C10851T C14408T A23403G G25563T

EPI_ISL_422416
 2020-03-18 2020-04-10
 Taiwan hCoV-19/Taiwan/NTU14/2020
 C241T C3037T C14408T A23403G G23856T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_422417
 2020-03-18 2020-04-10
 Taiwan hCoV-19/Taiwan/NTU15/2020
 C241T C3037T C7321T C13862T C14408T A23403G C28836T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_422645 LR877934
 2020-03-18 2020-04-11
 Netherlands hCoV-19/Netherlands/Gelderland_9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- C4668T C27920T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422650 LR878176
 2020-03-18 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_101/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G1743A C3037T C14408T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422651 LR878168
 2020-03-18 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_102/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A11438G C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422652 LR878197
 2020-03-18 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_103/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C20320T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422653 LR878190
 2020-03-18 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_104/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C11074T G11083T C14805T G26144T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422655 LR878191
 2020-03-18 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_106/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T A2380G C3037T C3447T C12374T C14408T A23403G G24368T G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422656 LR878196
 2020-03-18 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_107/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T A2380G C3037T C3447T C12374T C14408T A23403G G24368T G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422657 LR878188
 2020-03-18 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_109/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC G28975A GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422669 LR878210
 2020-03-18 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_122/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C275A C3037T C14408T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422853 LR878174
 2020-03-18 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_93/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C275A C3037T C14408T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422854 LR878181
 2020-03-18 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_94/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G26428T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422856 LR878183
 2020-03-18 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_96/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T13006C C14408T A23403G G25563T C25688T C28737T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422857 LR878172
 2020-03-18 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_97/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- C16762T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422890 LR877941
 2020-03-18 2020-04-11
 Netherlands hCoV-19/Netherlands/NoordBrabant_96/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422901 LR878203
 2020-03-18 2020-04-11
 Netherlands hCoV-19/Netherlands/ZuidHolland_102/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T11638C C14408T A23403G GGG28881AAC C29708T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422913 LR877728
 2020-03-18 2020-04-11
 Netherlands hCoV-19/Netherlands/ZuidHolland_41/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18828T G20275A A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422975 MT293170
 2020-03-18 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW405/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAG1- C8782T C17747T A17858G C18060T T28144C -29865AAA TG29867AA C29870A

EPI_ISL_422975 MT293170
 2020-03-18 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW405/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAG1- C8782T C17747T A17858G C18060T T28144C -29865AAA TG29867AA C29870A

EPI_ISL_422986 MT293181
 2020-03-18 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW416/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAAC19- C37T C8782T C17747T A17858G C18060T T28144C A29869T

EPI_ISL_422986 MT293181
 2020-03-18 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW416/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAAC19- C37T C8782T C17747T A17858G C18060T T28144C A29869T

EPI_ISL_422987 MT293182
 2020-03-18 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW417/2020
 ATTAAAG1- G8C TACCTTCCCAGGTAACAAACCAACC13- C241T C1059T C3037T C14408T G17808T A23403G G25563T C27964T AAAAA29899-

EPI_ISL_422987 MT293182
 2020-03-18 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW417/2020
 ATTAAAG1- G8C TACCTTCCCAGGTAACAAACCAACC13- C241T C1059T C3037T C14408T G17808T A23403G G25563T C27964T AAAAA29899-

EPI_ISL_422988 MT293183
 2020-03-18 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW418/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C4990T C8782T C17747T A17858G C18060T C19325T G25252A A27398G A27525G T28144C A29903-

EPI_ISL_422988 MT293183
 2020-03-18 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW418/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C4990T C8782T C17747T A17858G C18060T C19325T G25252A A27398G A27525G T28144C A29903-

EPI_ISL_422989 MT293184
 2020-03-18 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW419/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATA1- C5784T C8782T C17747T A17858G C18060T G20580T G26730A T28144C C29253T AAAAAAAAA29895-

EPI_ISL_422989 MT293184
 2020-03-18 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW419/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATA1- C5784T C8782T C17747T A17858G C18060T G20580T G26730A T28144C C29253T AAAAAAAAA29895-

EPI_ISL_422990
 2020-03-18 2020-04-12
 United States hCoV-19/USA/WA-UW-1295/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAA1- C8782T C17747T A17858G C18060T T28144C AAAA29900-

EPI_ISL_422993
 2020-03-18 2020-04-12
 United States hCoV-19/USA/WA-UW-1321/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTG1- T5098C C8782T C17747T A17858G C18060T G21255C T28144C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_422994 MT293189
 2020-03-18 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW424/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C241T C1059T C3037T C14408T G15760A A23403G G25563T AAAAAAAAA29895-

EPI_ISL_422994 MT293189
 2020-03-18 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW424/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C241T C1059T C3037T C14408T G15760A A23403G G25563T AAAAAAAAA29895-

EPI_ISL_422999 MT293194
 2020-03-18 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW429/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAA1- C8782T C17747T A17858G C18060T G22984A T27384C T28144C -29904ANAAANAA

EPI_ISL_422999 MT293194
 2020-03-18 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW429/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAA1- C8782T C17747T A17858G C18060T G22984A T27384C T28144C -29904ANAAANAA

EPI_ISL_423000
 2020-03-18 2020-04-12
 United States hCoV-19/USA/WA-UW-1420/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C241T C1059T C3037T C14408T A23403G G25563T A29903-

EPI_ISL_423010 MT293204
 2020-03-18 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW441/2020
 ATTAAAG1- AACC34TTTA C241T C1059T C3037T C14408T A23403G G25563T G29553A

EPI_ISL_423010 MT293204
 2020-03-18 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW441/2020
 ATTAAAG1- AACC34TTTA C241T C1059T C3037T C14408T A23403G G25563T G29553A

EPI_ISL_423025 MT293218
 2020-03-18 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW456/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- A6693G C8782T C17747T A17858G C18060T C25339T T28144C G29868C AA29902-

EPI_ISL_423025 MT293218
 2020-03-18 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW456/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- A6693G C8782T C17747T A17858G C18060T C25339T T28144C G29868C AA29902-

EPI_ISL_423026 MT293219
 2020-03-18 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW457/2020
 ATTAAAGGTTTATACC1- C241T C3037T A7479G C14408T A20268G A23403G G29734C AA29902-

EPI_ISL_423026 MT293219
 2020-03-18 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW457/2020
 ATTAAAGGTTTATACC1- C241T C3037T A7479G C14408T A20268G A23403G G29734C AA29902-

EPI_ISL_423027
 2020-03-18 2020-04-12
 United States hCoV-19/USA/WA-UW-1473/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCA1- G1401A C8782T -11277ATACTAGTTTGTCTGGTTTTAAGCTAAAAGACTGTGTTATGTATGCATCAGCTGTAGTGTTACTAATCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGATATGGTTGGATA G14490A C17747T A17858G C18060T T19044C -27850TTGAACTGCAAGATCATAATGAAACTTGTCACGCCTAAACGAACATGAAATTTCTTGTTTTCTTAGGAATTATCACAACTGTAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN C27920T T28144C -29904ANANAHA

EPI_ISL_423028 MT293220
 2020-03-18 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW460/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C241T C1059T C3037T T6394C C10319T C14408T A23403G G25563T C27964T AAA29901-

EPI_ISL_423028 MT293220
 2020-03-18 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW460/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C241T C1059T C3037T T6394C C10319T C14408T A23403G G25563T C27964T AAA29901-

EPI_ISL_423030 MT293222
 2020-03-18 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW463/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCT1- C241T C1059T C3037T C14408T A23403G C25096T G25563T G29868D A29903-

EPI_ISL_423030 MT293222
 2020-03-18 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW463/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCT1- C241T C1059T C3037T C14408T A23403G C25096T G25563T G29868D A29903-

EPI_ISL_423032 MT293224
 2020-03-18 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW465/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- A35T C37H C241T C1059T T2551C C3037T C14408T G16912T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_423032 MT293224
 2020-03-18 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW465/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- A35T C37H C241T C1059T T2551C C3037T C14408T G16912T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_423033 MT293225
 2020-03-18 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW466/2020
 ATTAAAGGTTTATACCTTCCCAGG1- AACC34TTTH C8782T T11320C C17747T A17858G C18060T T28144C AAAAAAAAAAAAAA29890-

EPI_ISL_423033 MT293225
 2020-03-18 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW466/2020
 ATTAAAGGTTTATACCTTCCCAGG1- AACC34TTTH C8782T T11320C C17747T A17858G C18060T T28144C AAAAAAAAAAAAAA29890-

EPI_ISL_423043
 2020-03-18 2020-04-12
 Thailand hCoV-19/Thailand/Bangkok-0022/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC C29666T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_423053
 2020-03-18 2020-04-12
 United Kingdom hCoV-19/England/20134002104/2020
 C241T C3037T C14408T A23403G A26530R

EPI_ISL_423948
 2020-03-18 2020-04-12
 United Kingdom hCoV-19/England/20128018804/2020
 C241T C1059T T1592C C3037T C14408T A23403G G23856T G25563T

EPI_ISL_424180 MT326187
 2020-03-18 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1294/2020
 A1G T3C C3587T C8782T C17747T A17858G C18060T T28144C -29904ANANANANANAAAAA

EPI_ISL_424182 MT326189
 2020-03-18 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1478/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C241T C1059T C3037T C14408T A23403G G25563T -29904ANANANATAD

EPI_ISL_424183 MT326190
 2020-03-18 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1436/2020
 ATTA1GAGT A35T C241T C1059T C3037T C14408T A23403G G25563T G29553A -29904GANAAAAANA

EPI_ISL_424184 MT326191
 2020-03-18 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1422/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAA1- TCT83CTC GG90-C C241T C1059T C3037T C14408T A23403G G25563T G29553A A29865C A29869T -29904ANAGAGAGAG

EPI_ISL_424377
 2020-03-18 2020-04-13
 Iceland hCoV-19/Iceland/353/2020
 C241T G845T C3037T C14408T A23403G A26530G

EPI_ISL_424403
 2020-03-18 2020-04-13
 Iceland hCoV-19/Iceland/379/2020
 C241T C2455T C3037T C10450T C14408T A23403G

EPI_ISL_424974
 2020-03-18 2020-04-14
 Taiwan hCoV-19/Taiwan/CGMH-CGU-18/2020
 AT1- C241T C3037T C14408T A23403G G25785T GGG28881AAC

EPI_ISL_424975
 2020-03-18 2020-04-14
 Taiwan hCoV-19/Taiwan/CGMH-CGU-19/2020
 ATTA1- C241T C3037T C14408T C18877T A23403G G25563T A29903-

EPI_ISL_424978
 2020-03-18 2020-04-14
 Taiwan hCoV-19/Taiwan/CGMH-CGU-20/2020
 AT1- C241T C3037T C14408T A23403G C25810T GGG28881AAC

EPI_ISL_425125 MT582459
 2020-03-18 2020-04-14
 Germany SARS-CoV-2/human/DEU/NRW-41/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_425126 MT582458
 2020-03-18 2020-04-14
 Germany SARS-CoV-2/human/DEU/NRW-42/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_425348
 2020-03-18 2020-04-14
 United Kingdom hCoV-19/England/CAMB-74B42/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_425382
 2020-03-18 2020-04-14
 United Kingdom hCoV-19/England/CAMB-74E85/2020
 A7479G C14805T T17247C C25572T G26144T C28887T

EPI_ISL_425488
 2020-03-18 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10E05C/2020
 ATG1605- A7824G C20270T

EPI_ISL_425489
 2020-03-18 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10E06B/2020
 G11083T C14805T T17247C G26144T

EPI_ISL_425491
 2020-03-18 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10E089/2020
 ATG1605- C1912T A2501G G13960A A18153G

EPI_ISL_425492
 2020-03-18 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10E098/2020
 A2480G C2558T G11083T C14805T G26144T

EPI_ISL_425494
 2020-03-18 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10E0B6/2020
 C241T C3037T A7877G T11798C C14408T C16289T A23403G G25429T

EPI_ISL_425495
 2020-03-18 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10E0C5/2020
 ATG1605- C20270T

EPI_ISL_425504
 2020-03-18 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10E186/2020
 A2480G C2558T C9924T G11083T C14805T C21998T G26144T

EPI_ISL_425505
 2020-03-18 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10E195/2020
 ATG1605- G17110T C19011T G29032A

EPI_ISL_425645
 2020-03-18 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10EB79/2020
 C241T C3037T C14408T T15351G G21518T A23403G

EPI_ISL_425722
 2020-03-18 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR183/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G G21624T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425727
 2020-03-18 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR195/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1587G G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425729
 2020-03-18 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR199/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425732
 2020-03-18 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR201/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1587G C2710G G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425734
 2020-03-18 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR203/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1587G C2710G G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425737
 2020-03-18 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR207/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C988T G11083T G12832A C14805T T17247C G26144T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_425741
 2020-03-18 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR212/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C228Y C241T C3037T C14408T C15981Y T17126C A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425747
 2020-03-18 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR220/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2401A C3037T C14408T A20268G A23403G C25916T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425856
 2020-03-18 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB052/2020
 C14805T T17247C C19484T

EPI_ISL_425861
 2020-03-18 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB057/2020
 C241T C313T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_425862
 2020-03-18 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB058/2020
 C241T C3037T A3911G C14408T A23403G C26028T

EPI_ISL_425906
 2020-03-18 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB124/2020
 C241T C1059T C1076T C3037T C10582T C14408T A23403G G25563T

EPI_ISL_426357
 2020-03-18 2020-04-16
 Czech Republic hCoV-19/Czech Republic/Seq4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCAT1- C241T C3037T C14408T A23403G GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_426360
 2020-03-18 2020-04-16
 Czech Republic hCoV-19/Czech Republic/Seq7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCAT1- C241T C3037T C14408T A23403G GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_426507
 2020-03-18 2020-04-17
 United States hCoV-19/USA/AZ-TG268360/2020
 C241T C1059T C3037T G13998A C14408T C17733T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426509
 2020-03-18 2020-04-17
 United States hCoV-19/USA/AZ-TG268629/2020
 C241T C1059T C3037T T6025C C14408T A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426640 MT451222
 2020-03-18 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC330/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- T490A C3177T C8782T T18736C G19684T C24034T T26729C C27635T G28077C T28144C A29700G

EPI_ISL_426642 MT451224
 2020-03-18 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC333/2020
 ATTA1- C241T C3037T C14408T A23403G T25473C T27233C GGG28881AAC

EPI_ISL_427043
 2020-03-18 2020-04-17
 Greece hCoV-19/Greece/13/2020
 C241T C3037T C14408T A23403G GGG28881AAC C28887T AAAAAAAAAAAAAA29890-

EPI_ISL_427281
 2020-03-18 2020-04-17
 United States hCoV-19/USA/MN-MDH-142/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037Y C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_427292
 2020-03-18 2020-04-18
 Brazil hCoV-19/Brazil/AL-837/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C12053T C14408T A23403G G25088T GGG28881AAC CTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29784-

EPI_ISL_427515
 2020-03-18 2020-04-18
 United States hCoV-19/USA/NY-NYUMC220/2020
 C241T C1059T C3037T C11916T C14408T A23403G G25563T

EPI_ISL_427516
 2020-03-18 2020-04-18
 United States hCoV-19/USA/NY-NYUMC221/2020
 C241T C1059T C3037T C14408T C18329T A23403G G25563T

EPI_ISL_427518
 2020-03-18 2020-04-18
 United States hCoV-19/USA/NY-NYUMC223/2020
 C241T C1059T G2809T C3037T C14408T A23403G G25563T

EPI_ISL_427519
 2020-03-18 2020-04-18
 United States hCoV-19/USA/NY-NYUMC224/2020
 C241T C1059T C3037T A11781G C14408T G16381A A23403G G25563T

EPI_ISL_427520
 2020-03-18 2020-04-18
 United States hCoV-19/USA/NY-NYUMC225/2020
 C241T C1059T C3037T C5817T C14408T G22289T A23403G G25563T

EPI_ISL_427521
 2020-03-18 2020-04-18
 United States hCoV-19/USA/NY-NYUMC226/2020
 C241T C1059T C3037T C14408T A23403G C25006T G25563T

EPI_ISL_428229
 2020-03-18 2020-04-20
 Taiwan hCoV-19/Taiwan/TSGH-12/2020
 C241T C3037T G6236T C14408T C14585T A23403G -29904AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

EPI_ISL_428263
 2020-03-18 2020-04-20
 United States hCoV-19/USA/WI-UW-167/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17747T A17858G C18060T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428714
 2020-03-18 2020-04-21
 Turkey hCoV-19/Turkey/HSGM-5602/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_428715
 2020-03-18 2020-04-21
 Turkey hCoV-19/Turkey/HSGM-5624/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14178T C14408T C18877T A23403G G25563T G26718T C26735T

EPI_ISL_428716
 2020-03-18 2020-04-21
 Turkey hCoV-19/Turkey/HSGM-5711/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T C18877T C22444T A23403G G25563T C26735T C28854T

EPI_ISL_429007 MT385431
 2020-03-18 2020-04-23
 United States SARS-CoV-2/human/USA/CA-CZB0458/2020
 ATTA1- C10632T

EPI_ISL_429171
 2020-03-18 2020-04-23
 Thailand hCoV-19/Thailand/Bangkok-0035/2020
 A1- A895G C2942T G4390T C8782T C9598T G20134T C21859T G24047A T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_429196
 2020-03-18 2020-04-23
 Switzerland hCoV-19/Switzerland/GE3144/2020
 ATTAAAGGTTTA1- C241T C3037T C4012T C14408T C15324T A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_429309
 2020-03-18 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH63/2020
 C241T C1059T C3037T G10465A C14408T C21742T A23403G G25563T G28899T

EPI_ISL_429312
 2020-03-18 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH66/2020
 C241T C1059T C3037T T8788C C14408T G22205T A23403G G25563T G26951A

EPI_ISL_429315
 2020-03-18 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH74/2020
 C241T C3037T C10369T C14408T A20268G C20759T A23403G G29734C

EPI_ISL_429316
 2020-03-18 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH75/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429750
 2020-03-18 2020-04-24
 Luxembourg hCoV-19/Luxembourg/LNS9598665/2020
 C241T C1059T C3037T C14408T A23403G G25563T G28857A AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_429818
 2020-03-18 2020-04-24
 Canada hCoV-19/Canada/MB_37/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C12710T C14408T G21989T C22792T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_429819
 2020-03-18 2020-04-24
 Canada hCoV-19/Canada/MB_38/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T G11083T C17747T A17858G C18060T A24694T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_430204 MT632531
 2020-03-18 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S166/2020
 G373A C8782T C17747T A17858G C18060T G26143T T27384C T28144C

EPI_ISL_430205 MT632504
 2020-03-18 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S167/2020
 C241T C379A C1059T T2244C C3037T C14408T A23403G G25563T

EPI_ISL_430206 MT632533
 2020-03-18 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S168/2020
 C241T C379A C1059T T2244C C3037T C14408T A23403G G25563T

EPI_ISL_430207 MT632536
 2020-03-18 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S169/2020
 C241T C379A C1059T T2244C C3037T C14408T A23403G G25563T

EPI_ISL_430819
 2020-03-18 2020-04-28
 Egypt hCoV-19/Egypt/NRC-03/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGT1- C241T C3037T C14408T C18877T G19006T A23403G G25563T C26735T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_430842
 2020-03-18 2020-04-28
 Thailand hCoV-19/Thailand/NIH-2982/2020
 ATTAAAGGTTTATACCTT1- C241T C1059T C3037T C14408T C14786T A23403G G25563T G28857A TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_431016
 2020-03-18 2020-04-29
 United States hCoV-19/USA/AK-PHL016/2020
 ATTAAAGGTTTAT1- T2266C C6027T A10236G G11083T C14805T T17247C G26144T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_431784
 2020-03-18 2020-04-29
 China hCoV-19/Fujian/IM3520017T/2020
 ATTAAAGGTTTATAC1- A3531G C6312A A10508G G11083T C13730T C23929T C28311T -29840C T29848A -29852A -29863T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_434540
 2020-03-18 2020-04-29
 Costa Rica hCoV-19/Costa Rica/0004/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T C14408T G15380T A23403G G25563T AAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACA29812- A29893G

EPI_ISL_434708
 2020-03-18 2020-05-01
 Thailand hCoV-19/Thailand/NIH-2982-2/2020
 ATTAAAGGTTTATACCTT1- C241T C1059T C3037T C14408T C14786T A23403G G25563T G28857A TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_434780
 2020-03-18 2020-05-01
 United States hCoV-19/USA/TX-HMH071/2020
 C241T C1059T C3037T C14408T G17808T A23403G G25563T T27384C C27964T

EPI_ISL_434783
 2020-03-18 2020-05-01
 United States hCoV-19/USA/TX-HMH074/2020
 G11083T C14805T T17247C G26144T

EPI_ISL_435064
 2020-03-18 2020-05-02
 India hCoV-19/India/NCDC-01705/2020
 C241T C1059T C3037T T8022K C9039M C14408T A23403G G25563T ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_435066
 2020-03-18 2020-05-02
 India hCoV-19/India/NCDC-01711/2020
 GA72RM C241T C3037T T8022K A8026W C9039M C10039Y C14408T C18877T G20274K A22102W C22444T T22515Y A23403G G25563T C26735T C28854T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_435067
 2020-03-18 2020-05-02
 India hCoV-19/India/NCDC-01712/2020
 C241T C3037T T8022K C10039T T13402K T13408K C14408T C18877T C22444T C22458T A23403G AG24389MS G25563T C26735T C28854T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_435068
 2020-03-18 2020-05-02
 India hCoV-19/India/NCDC-01757/2020
 C241T C1063Y C3037T T8022K C10039Y T13402K C14408T C18877T C22444T A23403G T23965W G25563T C26735T C28854T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_435069
 2020-03-18 2020-05-02
 India hCoV-19/India/NCDC-01744/2020
 C241T C3037T T8022K A8026W G8137R C9039M T13402K C14408T C18877T C22444T T22515Y A23403G G25563T C26735T C28854T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_435143
 2020-03-18 2020-05-03
 United Arab Emirates hCoV-19/United Arab Emirates/L9768/2020
 C241T GTTATG515- C3037T C14408T C16323T A23403G C28770T GGG28881AAC

EPI_ISL_435317
 2020-03-18 2020-05-04
 Vietnam hCoV-19/Vietnam/VNHN_01097/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- A6502G G11083T C14805T G26144T G28842T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_435697
 2020-03-18 2020-05-05
 Singapore hCoV-19/Singapore/92/2020
 ATTAAAGGTTTA1- C241T A761G C1059T C3037T T8482Y G11083T C14408T G17259T A23403G G25563T A27736G CTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29788-

EPI_ISL_435698
 2020-03-18 2020-05-05
 Singapore hCoV-19/Singapore/93/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACT1- A2480G C2558T C3593Y C7420T G11083T C14805T G19021K C22323T G26144T G28178K CTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29803-

EPI_ISL_435699
 2020-03-18 2020-05-05
 Singapore hCoV-19/Singapore/94/2020
 ATTAAAGGTTTATACCT1- C241T C3037T T8517W G13205T C14408T G21430R G21624R A23403G GGG28881AAC GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_435700
 2020-03-18 2020-05-05
 Singapore hCoV-19/Singapore/95/2020
 ATTA1- C241T C1059T A2018G C3037T C14408T A23403G G25563T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_436080 MT434810
 2020-03-18 2020-05-05
 United States SARS-CoV-2/human/USA/NY-CDC-SURV0988NYC/2020
 C241T C1059T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_436201
 2020-03-18 2020-05-06
 Spain hCoV-19/Spain/Valencia106/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T G1882T C3037T C14408T A23403G C29144T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_436203
 2020-03-18 2020-05-06
 Spain hCoV-19/Spain/Valencia108/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T G1882T C3037T C14408T A23403G C26461G TGG26465- C29144T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_436227
 2020-03-18 2020-05-06
 Spain hCoV-19/Spain/Valencia132/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C14408T A23403G GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_436230
 2020-03-18 2020-05-06
 Spain hCoV-19/Spain/Valencia135/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T T8729C C14408T A20268G A23403G G29734C CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_436231
 2020-03-18 2020-05-06
 Spain hCoV-19/Spain/Valencia136/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C313T C3037T C14408T A23403G GGG28881AAC C29585T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_436238
 2020-03-18 2020-05-06
 Spain hCoV-19/Spain/Valencia143/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_436240
 2020-03-18 2020-05-06
 Spain hCoV-19/Spain/Valencia145/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T G1882T C3037T C14408T A23403G C29144T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_436241
 2020-03-18 2020-05-06
 Spain hCoV-19/Spain/Valencia146/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C8782T T9477A C12357T C14805T A22151G G25979T T28144C C28511T C28657T C28863T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_436242
 2020-03-18 2020-05-06
 Spain hCoV-19/Spain/Valencia147/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A20268G A23403G G29734C CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_436822 MT439265
 2020-03-18 2020-05-06
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20110/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C1059T C3037T C14408T A23403G G25563T G25565R TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_436823 MT439252
 2020-03-18 2020-05-06
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20161/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C8782T C17747Y A17858G C18060T A24694T T28144C TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_436824 MT439254
 2020-03-18 2020-05-06
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20175/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T G3246T C14408T G15760A A23403G G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_437206
 2020-03-18 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0005/2020
 C241T C3037T C14408T G19825T A23403G GGG28881AAC

EPI_ISL_437332
 2020-03-18 2020-05-08
 Turkey hCoV-19/Turkey/HSGM-4698/2020
 ATTAAA1- C228T C2416T C3037T G8371T G11083T C14408T A23403G G25563T C26549T C27103T AAAAAAAAAAAAAAAA29888-

EPI_ISL_437481
 2020-03-18 2020-05-10
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Makkah19/2020
 C241T C3037T C14408T C18877T TTA21991- G22205C A23403G G25563T C26735T

EPI_ISL_437605 MT447173
 2020-03-18 2020-05-01
 Thailand SARS-CoV-2/human/THA/SI205929-NT/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C40T T42C C44T A895G C2942T G4390T C8782T C9598T C13329T G20134T G24047A G27877T T28144C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_437606 MT447172
 2020-03-18 2020-05-01
 Thailand SARS-CoV-2/human/THA/SI205529-NT/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T T658C C3037T G4300T C14408T G19542T A23403G A24862G C28629T C29253T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860C

EPI_ISL_437625
 2020-03-18 2020-05-11
 Poland hCoV-19/Poland/Wro-02/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_437635
 2020-03-18 2020-05-11
 Denmark hCoV-19/Denmark/ALAB-SSI-1102/2020
 C241T C3037T C7834T C14408T A15847G A23403G

EPI_ISL_437887 MT459888
 2020-03-18 2020-05-11
 Greece SARS-CoV-2/human/GRC/220_35357/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A20268G A23403G ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_437966
 2020-03-18 2020-05-12
 Austria hCoV-19/Austria/CeMM0106/2020
 C241T C3037T C14408T T22521K A23403G A24862G C28629T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_437971
 2020-03-18 2020-05-12
 Austria hCoV-19/Austria/CeMM0113/2020
 C241T C1059T C3037T C14408T C16716Y G20709T T22521K A23403G G25563T GAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29864-

EPI_ISL_437972
 2020-03-18 2020-05-12
 Austria hCoV-19/Austria/CeMM0114/2020
 G1440A G2891R C7011T G11083T T22521K AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_437973
 2020-03-18 2020-05-12
 Austria hCoV-19/Austria/CeMM0115/2020
 C241T C3037T C14408T A20268G T22521K A23403G G28851T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_438061
 2020-03-18 2020-05-12
 Austria hCoV-19/Austria/CeMM0228/2020
 C241T C3037T C14408T T22521K A23403G C27046T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_438062
 2020-03-18 2020-05-12
 Austria hCoV-19/Austria/CeMM0229/2020
 C241T C1059T C3037T C14408T C19145Y A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_438063
 2020-03-18 2020-05-12
 Austria hCoV-19/Austria/CeMM0230/2020
 C241T C3037T C9665T C14408T A23403G C27046T GGG28881AAC AAAAAAAAAAAAAAAAA29887-

EPI_ISL_438064
 2020-03-18 2020-05-12
 Austria hCoV-19/Austria/CeMM0232/2020
 G1508A G11083T C14805T T14832C T22521K C23707T G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_438065
 2020-03-18 2020-05-12
 Austria hCoV-19/Austria/CeMM0233/2020
 C8782T T9530K C26088T T27801C T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_438246
 2020-03-18 2020-05-12
 United States hCoV-19/USA/MD-HP00104/2020
 T490A C3177T C6040T C8782T C8950T G12478A T18736C C24034T T26729C G28077C T28144C C28896G C29451T A29700G

EPI_ISL_440288
 2020-03-18 2020-05-12
 United Kingdom hCoV-19/England/CAMB-736F7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A C7011T C28054T G28812T

EPI_ISL_441409
 2020-03-18 2020-05-12
 United Kingdom hCoV-19/Northern Ireland/NIRE-1023C8/2020
 ATTAAAGGTTTA1- A1515G T7831C C9223T G11083T C14805T T17247C A17799G G26144T GAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29864-

EPI_ISL_441414
 2020-03-18 2020-05-12
 United Kingdom hCoV-19/Northern Ireland/NIRE-FB378/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- G600A G1820A A2480G C2558T T8599C G11083T C14805T T18070Y A23128M C24370T G26144T C29870A

EPI_ISL_441422
 2020-03-18 2020-05-12
 United Kingdom hCoV-19/Northern Ireland/NIRE-FB42A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T C14408T T22371Y A23403G GGG28881AAC C29870A

EPI_ISL_441428
 2020-03-18 2020-05-12
 United Kingdom hCoV-19/Northern Ireland/NIRE-FB484/2020
 ATTAAAG1- C241T C3037T C14408T A23403G GGG28881AAC C29870A

EPI_ISL_441430
 2020-03-18 2020-05-12
 United Kingdom hCoV-19/Northern Ireland/NIRE-FB4A2/2020
 ATTAAAGGTT1- ATG1605- C6696T C11001T T22729C C25844T C29870A

EPI_ISL_441433
 2020-03-18 2020-05-12
 United Kingdom hCoV-19/Northern Ireland/NIRE-FB4DF/2020
 ATTAAAGGTTTATACCT1- C241T C3037T C13862T C14408T A23403G C28836T

EPI_ISL_443188
 2020-03-18 2020-05-12
 Singapore hCoV-19/Singapore/96/2020
 G1266R G2528A C6312A G11083T C13730T C23929T C25658T C28311T AAAAAAAAAAAA29892-

EPI_ISL_443197
 2020-03-18 2020-05-12
 Singapore hCoV-19/Singapore/105/2020
 T76W T78K C241T C3037T T11638C C14408T T14887Y A23403G GGG28881AAC C29708T AAAAAAAAAAAA29892-

EPI_ISL_443200
 2020-03-18 2020-05-12
 Singapore hCoV-19/Singapore/108/2020
 T23487G AAAAAAAAAAAA29892-

EPI_ISL_443202
 2020-03-18 2020-05-12
 Singapore hCoV-19/Singapore/110/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAA29892-

EPI_ISL_443203
 2020-03-18 2020-05-12
 Singapore hCoV-19/Singapore/111/2020
 G198R C203Y T277Y T283Y C6312A A6692R A8302R G11083T C13730T C16646Y C19374T T21632Y C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_443204
 2020-03-18 2020-05-12
 Singapore hCoV-19/Singapore/112/2020
 C241T C3037T C14408T A21137G A23403G GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_443205
 2020-03-18 2020-05-12
 Singapore hCoV-19/Singapore/113/2020
 C241T C3037T C3373A C4206Y T13532C C14408T A23403G G25906T GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_443206
 2020-03-18 2020-05-12
 Singapore hCoV-19/Singapore/114/2020
 C4683T AAAAAAAAAAAA29892-

EPI_ISL_443207
 2020-03-18 2020-05-12
 Singapore hCoV-19/Singapore/115/2020
 G11083T C14805T T17247C G26144T AAAAAAAAAAAA29892-

EPI_ISL_443208
 2020-03-18 2020-05-12
 Singapore hCoV-19/Singapore/116/2020
 C241T C3037T T3466C C13862T C14408T C15352T A23403G C28836T G29229A AAAAAAAAAAAA29892-

EPI_ISL_443209
 2020-03-18 2020-05-12
 Singapore hCoV-19/Singapore/117/2020
 C241T C1059T C3037T C5884T C13487T C14408T C22858T A23403G G25563T AAAAAAAAAAAA29892-

EPI_ISL_443210
 2020-03-18 2020-05-12
 Singapore hCoV-19/Singapore/118/2020
 C241T C3037T C14408T A23403G G27281T GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_443211
 2020-03-18 2020-05-12
 Singapore hCoV-19/Singapore/119/2020
 C4069T C26985Y AAAAAAAAAAAA29892-

EPI_ISL_443214
 2020-03-18 2020-05-12
 Singapore hCoV-19/Singapore/122/2020
 C241T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_443215
 2020-03-18 2020-05-12
 Singapore hCoV-19/Singapore/123/2020
 C241T C1059T T2461A C3037T G14290T C14408T A23403G G25563T AAAAAAAAAAAA29892-

EPI_ISL_443228
 2020-03-18 2020-05-12
 Singapore hCoV-19/Singapore/136/2020
 C17010Y AAAAAAAAAAAA29892-

EPI_ISL_443241
 2020-03-18 2020-05-12
 Singapore hCoV-19/Singapore/149/2020
 C6310A C6312A G11083T C13730T C19524T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_443243
 2020-03-18 2020-05-12
 Singapore hCoV-19/Singapore/151/2020
 C241T C1059T C3037T C14408T A23403G G24764K C25006Y C25047S G25563T G29737S AAAAAAAAAAAA29892-

EPI_ISL_443267
 2020-03-18 2020-05-12
 France hCoV-19/France/B5325/2020
 C36T C241T C1427T C3037T C6195T C14408T T17568C A23403G G24872T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_443268
 2020-03-18 2020-05-12
 France hCoV-19/France/B5336/2020
 C241T C1059T C3037T C14184T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_444022
 2020-03-18 2020-05-13
 United States hCoV-19/USA/TX_GCID_192000003/2020
 ATTA1- AA5GC C241T C1059T C3037T G3892T C14408T A23403G G25563T A29883G AAAAAAAAAAAAAAAAAA29886G

EPI_ISL_444275 MT479224
 2020-03-18 2020-05-13
 Taiwan SARS-CoV-2/human/TWN/CGMH-CGU-22/2020
 ATT1- CTATACATGTCTCTGGGACCAATGGTA21762- ATCAGACTCAGACTA23583- C28776A A29903-

EPI_ISL_444560
 2020-03-18 2020-05-14
 United States hCoV-19/USA/IL-NM065/2020
 A15426G G29711T

EPI_ISL_444566
 2020-03-18 2020-05-14
 United States hCoV-19/USA/IL-NM071/2020
 T490A C3177T C8782T T18736C C24034T T26729C C27635T G28077C T28144C A29567C A29700G

EPI_ISL_444567
 2020-03-18 2020-05-14
 United States hCoV-19/USA/IL-NM072/2020
 T490A C3177T C6040T C8782T G12478A T18736C C24034T T26729C G28077C T28144C C28313T C28896G A29700G

EPI_ISL_444776
 2020-03-18 2020-05-14
 United States hCoV-19/USA/NY-NYUMC659/2020
 C241T C1059T C3037T C6926T C11916T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_444777
 2020-03-18 2020-05-14
 United States hCoV-19/USA/NY-NYUMC660/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_444780
 2020-03-18 2020-05-14
 United States hCoV-19/USA/NJ-NYUMC663/2020
 C241T C1059T C3037T C11916T C14408T A23403G G25563T

EPI_ISL_444781
 2020-03-18 2020-05-14
 United States hCoV-19/USA/NY-NYUMC664/2020
 C241T C1059T C3037T C14408T C17976T G20238T A23403G G25563T

EPI_ISL_444784
 2020-03-18 2020-05-14
 United States hCoV-19/USA/NY-NYUMC667/2020
 C241T C3037T C14408T T15264C A23403G

EPI_ISL_444789
 2020-03-18 2020-05-14
 United States hCoV-19/USA/NY-NYUMC672/2020
 C241T C1059T G1820A C3037T C10851T C14408T A23403G C25047T G25563T

EPI_ISL_444790
 2020-03-18 2020-05-14
 United States hCoV-19/USA/NY-NYUMC673/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_444791
 2020-03-18 2020-05-14
 United States hCoV-19/USA/NY-NYUMC674/2020
 C241T C1059T C3037T C14408T A23403G G25563T C29364T T29515C

EPI_ISL_444897
 2020-03-18 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-770/2020
 C241T C3037T C7834T C14408T C16887T A23403G

EPI_ISL_444898
 2020-03-18 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-773/2020
 C241T C1059T C3037T C14408T A23403G G25563T A29797T

EPI_ISL_444899
 2020-03-18 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-774/2020
 C241T C1059T C3037T T8788C C14408T A23403G G25563T G26951A

EPI_ISL_445360
 2020-03-18 2020-05-15
 Chile hCoV-19/Chile/Santiago_64/2020
 ATT1TCC AGG6GAA C241T G1319A C3037T C8389T C14408T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_445361
 2020-03-18 2020-05-15
 Chile hCoV-19/Chile/Santiago_65/2020
 TT2AC -5GAT C241T C3037T C14408T T19590C A23403G GGG28881AAC TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_447200 MT506649
 2020-03-18 2020-05-16
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20230/2020
 C241T C1059T C3037T A14224R C14408T A23403G G25563T

EPI_ISL_447324
 2020-03-18 2020-05-17
 Israel hCoV-19/Israel/51140315/2020
 A8040G G11083T C14805T T17247C G17590T C17676T G26144T G26660T C29627T AAAAAAAAAAAA29892-

EPI_ISL_447642 MT459887
 2020-03-18 2020-05-11
 Greece SARS-CoV-2/human/GRC/219_35198/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_450011
 2020-03-18 2020-05-19
 United States hCoV-19/USA/NY-PV09322/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A GTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29759-

EPI_ISL_450012
 2020-03-18 2020-05-19
 United States hCoV-19/USA/NY-PV09323/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G G25563T GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_450013
 2020-03-18 2020-05-19
 United States hCoV-19/USA/NY-PV09324/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T C1059T C3037T C14408T A23403G G25563T C28849T GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_450014
 2020-03-18 2020-05-19
 United States hCoV-19/USA/NY-PV09325/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C12488T C14408T A23403G G25563T A28482G C29421T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450015
 2020-03-18 2020-05-19
 United States hCoV-19/USA/NY-PV09326/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C1917T C3037T C14408T A23403G G25563T AGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29763-

EPI_ISL_450016
 2020-03-18 2020-05-19
 United States hCoV-19/USA/NY-PV09327/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C8782T T11271C C17747T A17858G C18060T T28144C C28708T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450017
 2020-03-18 2020-05-19
 United States hCoV-19/USA/NY-PV09328/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- G11083T C14805T G26144T G28842T CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_450019
 2020-03-18 2020-05-19
 United States hCoV-19/USA/NY-PV09330/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C1917T C3037T C14408T G15571T A23403G C23895T G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450020
 2020-03-18 2020-05-19
 United States hCoV-19/USA/NY-PV09331/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C1059T C3037T C14408T A23403G G25563T C29640T CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_450021
 2020-03-18 2020-05-19
 United States hCoV-19/USA/NY-PV09333/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C1059T C3037T C13536T C14408T A23403G C23453T G25563T GTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29759-

EPI_ISL_450022
 2020-03-18 2020-05-19
 United States hCoV-19/USA/NY-PV09334/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G G25563T GCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29773-

EPI_ISL_450023
 2020-03-18 2020-05-19
 United States hCoV-19/USA/NY-PV09335/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTT1- T6691C C7843T G11083T A13768G C14805T A15869T T17247C C17639T G19542T G26144T C28915T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450024
 2020-03-18 2020-05-19
 United States hCoV-19/USA/NY-PV09336/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C1059T C3037T C14408T A23403G G25563T C25916T GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_450025
 2020-03-18 2020-05-19
 United States hCoV-19/USA/NY-PV09337/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C3037T C14408T T15264C A23403G GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_450468 MT499194
 2020-03-18 2020-05-21
 United States SARS-CoV-2/human/USA/CA-CZB-1219/2020
 ATTAAAGGTTTA1- C14262T

EPI_ISL_450506 MT350282
 2020-03-18 2020-04-16
 Brazil SARS-CoV-2/human/BRA/SP02cc/2020
 C2388T G11083T C14805T T17247C T21784A G26144T

EPI_ISL_451935
 2020-03-18 2020-05-25
 Belgium hCoV-19/Belgium/20A30/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T C15324T A23403G G29862A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_452034
 2020-03-18 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-159/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_452300
 2020-03-18 2020-05-27
 United States hCoV-19/USA/MI-MDHHS-SC20426/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAA29893-

EPI_ISL_452301
 2020-03-18 2020-05-27
 United States hCoV-19/USA/MI-MDHHS-SC20427/2020
 C241T C1059T C1093Y C3037T C14408T A23403G G25563T

EPI_ISL_452303
 2020-03-18 2020-05-27
 United States hCoV-19/USA/MI-MDHHS-SC20429/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAA29900-

EPI_ISL_452348
 2020-03-18 2020-05-27
 China hCoV-19/Beijing/DT-travelHU02/2020
 C241T G2229A C3037T C14408T T20891G C20896G A23403G A24950T T25519C GGG28881AAC

EPI_ISL_452503
 2020-03-18 2020-05-27
 Spain hCoV-19/Spain/COV001398/2020
 C241T C3037T C14408T A20268G A23403G

EPI_ISL_454049
 2020-03-18 2020-05-28
 Portugal hCoV-19/Portugal/PT0333/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C2416T C2878T C3037T G8371T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454050
 2020-03-18 2020-05-28
 Portugal hCoV-19/Portugal/PT0334/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454053
 2020-03-18 2020-05-28
 Portugal hCoV-19/Portugal/PT0337/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T G5230T C14408T A20268G A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454057
 2020-03-18 2020-05-28
 Portugal hCoV-19/Portugal/PT0341/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G2305T C3037T C14408T A23403G T27299C GGG28881AAC T29148C TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454061
 2020-03-18 2020-05-28
 Portugal hCoV-19/Portugal/PT0345/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- C241T C3037T C14408T A23403G GGG28881AAC CGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29754-

EPI_ISL_454062
 2020-03-18 2020-05-28
 Portugal hCoV-19/Portugal/PT0346/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C11455T C14408T C21242T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454063
 2020-03-18 2020-05-28
 Portugal hCoV-19/Portugal/PT0347/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3140T C13059T C14408T A23403G G24077T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454065
 2020-03-18 2020-05-28
 Portugal hCoV-19/Portugal/PT0349/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C2704T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454068
 2020-03-18 2020-05-28
 Portugal hCoV-19/Portugal/PT0352/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3140T C14408T A23403G G24077T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454069
 2020-03-18 2020-05-28
 Portugal hCoV-19/Portugal/PT0353/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3140T C14408T A23403G G24077T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454070
 2020-03-18 2020-05-28
 Portugal hCoV-19/Portugal/PT0354/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T G5230T C14408T A20268G A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454071
 2020-03-18 2020-05-28
 Portugal hCoV-19/Portugal/PT0355/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C3037T C14408T C19185T A23403G GGG28881AAC CGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29750-

EPI_ISL_454128
 2020-03-18 2020-05-28
 Portugal hCoV-19/Portugal/PT0404/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C1594T C3037T C11109T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454229
 2020-03-18 2020-05-28
 Portugal hCoV-19/Portugal/PT0505/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C11674T C14408T C20031A A23403G C27046T GGG28881AAC G29392T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454342
 2020-03-18 2020-05-28
 Portugal hCoV-19/Portugal/PT0619/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G T28678C GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454581
 2020-03-18 2020-05-28
 Croatia hCoV-19/Croatia/1146_Split/2020
 ATTAAA1- C241Y C3037Y G6865K C14408T A23403G A25531R G25593S C26456Y GGG28881AAC TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_454583
 2020-03-18 2020-05-28
 Croatia hCoV-19/Croatia/1560_Split/2020
 ATTAAA1- C241T C3037T C14408T A23403G G25593C TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_454765
 2020-03-18 2020-05-29
 Netherlands hCoV-19/Netherlands/Utrecht_10016/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T G13564T C14408T A23403G C24023T C27046T GGG28881AAC AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_454953
 2020-03-18 2020-05-29
 China hCoV-19/Wuhan/HB-WH4-201/2020
 T7734C T28144C

EPI_ISL_454960
 2020-03-18 2020-05-29
 China hCoV-19/Wuhan/HB-WH4-211/2020
 T2390C C4683T G26144T

EPI_ISL_454971
 2020-03-18 2020-05-29
 China hCoV-19/Wuhan/HB-WH5-226/2020
 G26144T

EPI_ISL_454979
 2020-03-18 2020-05-29
 China hCoV-19/Wuhan/HB-WH5-238/2020
 C11190T T28144C

EPI_ISL_455208
 2020-03-18 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_406/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G12550A C14408T A20268G C20740A A23403G G29734C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455209
 2020-03-18 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_407/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4586T G12550A C14408T A20268G C20740A A23403G G29734C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455387
 2020-03-18 2020-05-29
 China hCoV-19/Wuhan/HB-WH4-199/2020
 A7886G A13917C G14677- T28144C

EPI_ISL_455393
 2020-03-18 2020-05-29
 China hCoV-19/Wuhan/HB-WH5-234/2020
 A15217- A29078- C29303T

EPI_ISL_455442
 2020-03-18 2020-05-29
 Poland hCoV-19/Poland/PL_P29/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_455583
 2020-03-18 2020-06-01
 Thailand hCoV-19/Thailand/Nonthaburi_2982/2020
 C241T C1059T C3037T C14408T C14786T A23403G G25563T G28857A AAAAAAAAAAAA29892-

EPI_ISL_455694
 2020-03-18 2020-06-01
 Vietnam hCoV-19/Vietnam/VNHN_1098/2020
 C241T C3037T G4908A C14408T A23403G C27679T GGG28881AAC

EPI_ISL_455695
 2020-03-18 2020-06-01
 Vietnam hCoV-19/Vietnam/VNHN_1099/2020
 C241T C3037T C14408T A23403G C27679T GGG28881AAC

EPI_ISL_455696
 2020-03-18 2020-06-01
 Vietnam hCoV-19/Vietnam/VNHN_1167/2020
 C241T G370A C3037T C14408T C18877T A23403G G25563T

EPI_ISL_456165
 2020-03-18 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR0760/2020
 C241T C3037T C14408T A20268G A23403G

EPI_ISL_456167
 2020-03-18 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR0765/2020
 C241T C3037T C14408T A20268G A23403G

EPI_ISL_456168
 2020-03-18 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR0770/2020
 A1515G C9223T G11083T C14805T T17247C G21795A G26144T

EPI_ISL_456173
 2020-03-18 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR0988/2020
 A2480G C2558T A4411T C11074T G11083T C14805T G26144T

EPI_ISL_457812 MT646082
 2020-03-18 2020-06-02
 United States SARS-CoV-2/human/USA/MD-HP00119/2020
 C241T C2416T C3037T G4523A C10712T C14408T A21958C A23403G G25563T

EPI_ISL_457814 MT646084
 2020-03-18 2020-06-02
 United States SARS-CoV-2/human/USA/DC-HP00122/2020
 T212A C233T C241T C1059T C3037T C8683T C14408T A23403G G25563T

EPI_ISL_457819 MT646090
 2020-03-18 2020-06-02
 United States SARS-CoV-2/human/USA/MD-HP00131/2020
 C241T C2416T C3037T C9430T C14408T A23403G G25563T G26233T

EPI_ISL_457977
 2020-03-18 2020-06-02
 Oman hCoV-19/Oman/RESP-20-2850/2020
 C6312A G11083T C13730T C23929T C28311T

EPI_ISL_457978
 2020-03-18 2020-06-02
 Oman hCoV-19/Oman/RESP-20-2857/2020
 T17247C G26144T

EPI_ISL_457979
 2020-03-18 2020-06-02
 Oman hCoV-19/Oman/RESP-20-3080/2020
 C40T C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_457980
 2020-03-18 2020-06-02
 Oman hCoV-19/Oman/RESP-20-3515/2020
 C241T C3037T A5220T T8110G C14408T C19170T G19509A A23403G GGG28881AAC

EPI_ISL_457985
 2020-03-18 2020-06-02
 Oman hCoV-19/Oman/RESP-20-3343/2020
 C241T C3037T A6466G C14408T A23403G

EPI_ISL_458017
 2020-03-18 2020-06-03
 United States hCoV-19/USA/NY-NYUMC878/2020
 G199T C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_458018
 2020-03-18 2020-06-03
 United States hCoV-19/USA/NY-NYUMC879/2020
 C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_458020
 2020-03-18 2020-06-03
 United States hCoV-19/USA/NY-NYUMC881/2020
 C241T T1918C C3037T C14408T C18877T A23403G G25563T

EPI_ISL_458021
 2020-03-18 2020-06-03
 United States hCoV-19/USA/NY-NYUMC882/2020
 G11083T C14805T G26144T G28842T

EPI_ISL_458139
 2020-03-18 2020-06-03
 Brazil hCoV-19/Brazil/AC162535-IEC/2020
 C241T C3037T G7677T C14408T C21058T A23403G T27299C GGG28881AAC T29148C

EPI_ISL_459856
 2020-03-18 2020-06-04
 Chile hCoV-19/Chile/EstacionCentral-26347/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1319A C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_459866
 2020-03-18 2020-06-04
 Canada hCoV-19/Canada/ON_QGLO-01/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C3037T C14408T G19677T A23403G GGG28881AAC TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856CT

EPI_ISL_459955
 2020-03-18 2020-06-05
 Malaysia hCoV-19/Malaysia/IMR_WC2665/2020
 ATTAAAG1- C6312A G11083T C13730T G23162A C23929T C28311T G29861TCTGCAACTCGTTCCTCAAGGGAC T29867A A29869T A29872G A29874G AA29877GG A29882C -29884TGTTTT A29886G -29889TGTACTT -A29892TTTTTGTGCAATTCACCAGTGAATTCATT A29895G AA29898CT A29901T -29904TTTTCATTGTGA

EPI_ISL_460070
 2020-03-18 2020-06-05
 United States hCoV-19/USA/MN-MDH-87/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- A2480G C2558T C10908T G11083T C14805T G15372T G26144T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_460071
 2020-03-18 2020-06-05
 United States hCoV-19/USA/MN-MDH-89/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T C3037T C14408T C20762T A23403G G25563T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_460178 MT520253
 2020-03-18 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00530/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C8782T C17747T A17858G C18060T A24694T T28144C TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_460262 MT520337
 2020-03-18 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00523/2020
 ATTAAA1- C241T C1059T A2165G C3037T C14408T A23403G G25563T -29564TA G29711T AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_460344 MT520419
 2020-03-18 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00528/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- G1148T A1515G C9223T G11083T C14805T T17247C G26144T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460413 MT520488
 2020-03-18 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00533/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C36T C241T C2416T C3037T C14408T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460458 MT520533
 2020-03-18 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00525/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C2416T C3037T C14408T G22361T A23403G C24096A G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460655
 2020-03-18 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_19/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C11109T C14408T A23403G C25482T G25563T G26101T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460667
 2020-03-18 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_494/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C478T C3037T G12550A C14408T A20268G C20740A A23403G G25996T C29548A G29734C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460698
 2020-03-18 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_525/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G20275A A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461259
 2020-03-18 2020-06-06
 Netherlands hCoV-19/Netherlands/Zeeland_20/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4255T C14408T A23403G A26530G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461287
 2020-03-18 2020-06-06
 Netherlands hCoV-19/Netherlands/Zeeland_5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C15342T C22712T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_462284
 2020-03-18 2020-06-08
 Singapore hCoV-19/Singapore/166/2020
 C241T C1059T C3037T T6394C C10319T C14408T A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_462405
 2020-03-18 2020-06-08
 Singapore hCoV-19/Singapore/287/2020
 C241T C1059T C3037T C6336T T8423Y C10582T C14408T A19098C A23403G G25563T AAAAAAAAAAAA29892-

EPI_ISL_463001 MT499215
 2020-03-18 2020-05-20
 Tunisia SARS-CoV-2/human/TUN/COV0010-12/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- T41C A361G T5557C A8658G C8782T C13495T G22468T T28144C G28878A AGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29687-

EPI_ISL_463990
 2020-03-18 2020-06-11
 Canada hCoV-19/Canada/ON_MU-S53/2020
 ATTAAAGGTTTATA1- C241T C3037T G4201T C14408T TTTGTATGTAAATAAACATGCATTCCACACACCAGCTTTTGATAAAAGTGCTTTTGTTAATTTAAAA19293- TACCATTTTTCTATTACTCTGACAGTCCATGTGAG19364- C19402T GAAAACAAGTAGTGTCAGATATAGATTATGTACCACTAAAGTCTGCT19406- T19460- C19465- TAGG19475- T19479A G19481T T19487- T19497- GTACAGATTGTATCTCGAT19509A GCT19549- A23403G C26527T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_467062
 2020-03-18 2020-06-12
 Spain hCoV-19/Spain/COV002910/2020
 C241T C3037T C14408T A20268G A23403G

EPI_ISL_467086
 2020-03-18 2020-06-12
 Spain hCoV-19/Spain/COV002603/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_467089
 2020-03-18 2020-06-12
 Spain hCoV-19/Spain/COV002605/2020
 C241T C1059T C1609T C3037T T3331C G11042T C12400T C14408T A23403G G25563T G25650K

EPI_ISL_467118
 2020-03-18 2020-06-12
 Spain hCoV-19/Spain/COV001473/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T C29353Y

EPI_ISL_467120
 2020-03-18 2020-06-12
 Spain hCoV-19/Spain/COV001540/2020
 C8782T T9477A T14458C C14805T G25979T T28144C C28657T C28863T

EPI_ISL_467125
 2020-03-18 2020-06-12
 Spain hCoV-19/Spain/COV001530/2020
 G4936C G5558A C8782T T9477A C14805T G25979T T28144C C28657T C28863T C29870A

EPI_ISL_467128
 2020-03-18 2020-06-12
 Spain hCoV-19/Spain/COV001477/2020
 C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_467133
 2020-03-18 2020-06-12
 Spain hCoV-19/Spain/COV001521/2020
 TGGTCATGTTATGGT508- C8782T T9477A C14805T G25979T G28109T T28144C C28657T C28863T

EPI_ISL_467143
 2020-03-18 2020-06-12
 Spain hCoV-19/Spain/COV001435/2020
 C8782T T9477A T10455G C14805T C21789T G25979T T28144C C28291T C28657T C28863T C29870A

EPI_ISL_467149
 2020-03-18 2020-06-12
 Spain hCoV-19/Spain/COV001628/2020
 G1148T C8782T T9477A T12175G C12412T C14805T G25979T T28144C C28657T C28863T

EPI_ISL_467163
 2020-03-18 2020-06-12
 Spain hCoV-19/Spain/COV001478/2020
 C241T C1059T C3037T T13006C C14408T G17302T A23403G G25563T C25688T C29870A

EPI_ISL_467168
 2020-03-18 2020-06-12
 Spain hCoV-19/Spain/COV001616/2020
 C8782T T9477A G11266R C12970T C14805T G25979T T28144C C28657T C28863T C29870A

EPI_ISL_467169
 2020-03-18 2020-06-12
 Spain hCoV-19/Spain/COV001621/2020
 C2003T C8782T T9477A C14805T G25979T T28144C C28657T C28863T C29870A

EPI_ISL_467176
 2020-03-18 2020-06-12
 Spain hCoV-19/Spain/COV001619/2020
 C8782T C9165T T9477A C14805T G25979T C27389T T28144C C28657T C28863T C29870A

EPI_ISL_467178
 2020-03-18 2020-06-12
 Spain hCoV-19/Spain/COV001482/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T

EPI_ISL_467179
 2020-03-18 2020-06-12
 Spain hCoV-19/Spain/COV001462/2020
 C241T C3037T C14408T G15438T A20268G A23403G G25049T

EPI_ISL_467181
 2020-03-18 2020-06-12
 Spain hCoV-19/Spain/COV001526/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T C29870A

EPI_ISL_467374
 2020-03-18 2020-06-13
 Indonesia hCoV-19/Indonesia/SMR-EIJK05/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C23577T C29614T AAAAAAAAAAAAAA29890-

EPI_ISL_467411
 2020-03-18 2020-06-13
 United States hCoV-19/USA/NY-NYUMC918/2020
 C241T C1059T C3037T C14408T G16744A A23403G C25463T G25563T

EPI_ISL_467412
 2020-03-18 2020-06-13
 United States hCoV-19/USA/NY-NYUMC919/2020
 C241T C1059T C3037T C6573T C14408T A23403G G25563T

EPI_ISL_467413
 2020-03-18 2020-06-13
 United States hCoV-19/USA/NY-NYUMC920/2020
 C241T C1059T C3037T C14408T A23403G G25563T C26625T

EPI_ISL_467417
 2020-03-18 2020-06-13
 United States hCoV-19/USA/NY-NYUMC924/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_467421
 2020-03-18 2020-06-13
 United States hCoV-19/USA/NY-NYUMC928/2020
 C241T C2416T C3037T C14408T A23403G G25563T C26942T

EPI_ISL_467422
 2020-03-18 2020-06-13
 United States hCoV-19/USA/NY-NYUMC929/2020
 C241T C1059T C3037T C14408T A23403G C25463T G25563T

EPI_ISL_467952
 2020-03-18 2020-06-16
 United States hCoV-19/USA/CA-SR0418/2020
 C241T C1059T A2018G C3037T C14408T A23403G G25563T

EPI_ISL_467955
 2020-03-18 2020-06-16
 United States hCoV-19/USA/CA-SR0424/2020
 C241T C1059T A2018G C3037T C14408T A23403G G25563T

EPI_ISL_467969
 2020-03-18 2020-06-16
 United States hCoV-19/USA/CA-SR0444/2020
 C241T C3037T C5869T C6402T T14133C C14408T A20268G A23403G C27603T G29734C

EPI_ISL_468063 MT365025
 2020-03-18 2020-04-20
 United States SARS-CoV-2/human/USA/USA-KY-9A06/2020
 C241T C379A C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAA29882-

EPI_ISL_468064 MT365026
 2020-03-18 2020-04-20
 United States SARS-CoV-2/human/USA/USA-KY-9A10/2020
 C8782T T15411C C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAA29889-

EPI_ISL_468065 MT365027
 2020-03-18 2020-04-20
 United States SARS-CoV-2/human/USA/USA-KY-9E09/2020
 T3172C C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAA29889-

EPI_ISL_468495 MT628219
 2020-03-18 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1555/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G816A C1912T C8782T G12331R C17747Y A17858G C18060T C20182Y C21005T T27462Y T28144C CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_468509 MT628232
 2020-03-18 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1578/2020
 C4776T C8782T C17747Y A17858G C18060T G28086K T28144C

EPI_ISL_468510 MT628233
 2020-03-18 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1579/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C3037T C8389T C14408T C20233Y A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_468914
 2020-03-18 2020-06-17
 Italy hCoV-19/Italy/IZSPB_703/2020
 A1TTGGAGCCCGA C241T C3037T C14408T T15978C A23403G GGG28881AAC AAAAAAAAAAAAAAA29889-

EPI_ISL_469016
 2020-03-18 2020-06-17
 Italy hCoV-19/Italy/IZSPB_706/2020
 A1GGCCGGA C241T C3037T C13225T C14408T A23403G GGG28881AAC AAAAAAAAA29895-

EPI_ISL_469283
 2020-03-18 2020-06-18
 France hCoV-19/France/221_61/2020
 ATTAAAGGTTTATA1- C241T C1059T C3037T C8964T C14408T A23403G G25563T G28808T

EPI_ISL_469284
 2020-03-18 2020-06-18
 France hCoV-19/France/220_95/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTC1- C241T C2416T C3037T G8371T C14408T A23403G C23635T G25563T

EPI_ISL_471472
 2020-03-18 2020-06-22
 Spain hCoV-19/Spain/Irsicaixa-JP/2020
 C241T C3037T G5230T A8113T C14408T C15963T A20268G A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_474869
 2020-03-18 2020-06-23
 Spain hCoV-19/Spain/Granada-COV002908/2020
 C241T C3037T C7303Y C14408T A17861M A20268G A23403G

EPI_ISL_474934
 2020-03-18 2020-06-23
 Spain hCoV-19/Spain/Murcia-COV002894/2020
 C241T C3037T C14408T A20268G A23403G

EPI_ISL_475062
 2020-03-18 2020-06-23
 Belgium hCoV-19/Belgium/UGent-102/2020
 C241T C3037T C14408T C15324T A23403G

EPI_ISL_475067
 2020-03-18 2020-06-23
 Belgium hCoV-19/Belgium/UGent-107/2020
 C241T C2401T C3037T G4255T C14408T A23403G G26268T A26530G G29431T

EPI_ISL_475069
 2020-03-18 2020-06-23
 Belgium hCoV-19/Belgium/UGent-109/2020
 C241T C3037T C14408T T19839C A23403G C24099T GGG28881AAC

EPI_ISL_475070
 2020-03-18 2020-06-23
 Belgium hCoV-19/Belgium/UGent-110/2020
 C241T C3037T C5497T C14120T C14408T C15324T A23403G

EPI_ISL_475072
 2020-03-18 2020-06-23
 Belgium hCoV-19/Belgium/UGent-112/2020
 C241T C3037T C14408T T19839C A23403G C24099T GGG28881AAC

EPI_ISL_475139
 2020-03-18 2020-06-23
 Sweden hCoV-19/Sweden/20-50435/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T

EPI_ISL_475562
 2020-03-18 2020-06-23
 Sweden hCoV-19/Sweden/20-05983/2020
 T514C ATG1605- C2610T C17410T G24368T

EPI_ISL_475563
 2020-03-18 2020-06-23
 Sweden hCoV-19/Sweden/20-05984/2020
 T514C ATG1605- C2610T C17410T G24368T

EPI_ISL_475948
 2020-03-18 2020-06-25
 Singapore hCoV-19/Singapore/417/2020
 C6336T T8613Y C9559T G11083T C14805T T17247C A19134G C19186T G20839A C22088T G26144T C27596T C27679T AAAAAAAAAAAA29892-

EPI_ISL_475963
 2020-03-18 2020-06-25
 Singapore hCoV-19/Singapore/432/2020
 G109R A895G A2172R C2676Y C2942T G4390T C8782T C9598Y T10249Y C14408Y C16375Y C17573Y G20134T T20834Y G24047A G25124K T28144C G29392R T29457Y AAAAAAAAAAAA29892-

EPI_ISL_477172
 2020-03-18 2020-06-29
 Singapore hCoV-19/Singapore/431nan/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477686
 2020-03-18 2020-06-29
 United States hCoV-19/USA/WA-UW-1412/2020
 ATTAAAGGT1- A31T AAC34TTT C241T C1059T C3037T C14408T A23403G G25563T G29553A CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_477687
 2020-03-18 2020-06-29
 United States hCoV-19/USA/WA-UW-1481/2020
 A4- A31T C36T C241T C1059T C3037T G7560A C14408T G19999T G21452T A23403G G25563T TG29867AA C29870A -29904AAAAAAAAAAAAAAAAAA

EPI_ISL_477690
 2020-03-18 2020-06-29
 United States hCoV-19/USA/WA-UW-1617/2020
 ATTAAAGGTTTATACC1- A31T AAC34TTT C241T C1059T C3037T C14408T G16912T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_478541
 2020-03-18 2020-06-30
 United Kingdom hCoV-19/England/NORT-284327/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G C9223T G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479214
 2020-03-18 2020-06-30
 United Kingdom hCoV-19/England/SHEF-C5702/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1347T C3037T C14408T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479218
 2020-03-18 2020-06-30
 United Kingdom hCoV-19/England/SHEF-C6446/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A C1911T G2891A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479883
 2020-03-18 2020-07-01
 Japan hCoV-19/Japan/PG-0174/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C925T C1059T C3037T C5310T C14408T A23403G G25563T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_479884
 2020-03-18 2020-07-01
 Japan hCoV-19/Japan/PG-0175/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C925T C1059T C3037T C5310T C14408T A23403G G25563T TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_479908
 2020-03-18 2020-07-01
 Japan hCoV-19/Japan/PG-0208/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C8782T G16381A T17877C T28144C G28878A G29742A ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_479934
 2020-03-18 2020-07-01
 Japan hCoV-19/Japan/PG-0246/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C3037T C14408T A20268G A23403G ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_479935
 2020-03-18 2020-07-01
 Japan hCoV-19/Japan/PG-0247/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C3037T C14408T A23403G C27247T GGG28881AAC GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_479967
 2020-03-18 2020-07-01
 Japan hCoV-19/Japan/PG-0289/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480387 MT772554
 2020-03-18 2020-07-01
 United States SARS-CoV-2/human/USA/WI-UW-405/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A A2430C C3177T C8782T C9142T T18736C C24034T T26729C C27635T G28077C T28144C A29567C A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_482323
 2020-03-18 2020-07-03
 United States hCoV-19/USA/OR-PROV-041/2020
 C5672T G11083T C14805T G26144T

EPI_ISL_482463
 2020-03-18 2020-07-03
 United States hCoV-19/USA/OR-PROV-228/2020
 C8782T C9565T C15240T C17747T A17858G C18060T C21774T T28144C

EPI_ISL_482464
 2020-03-18 2020-07-03
 United States hCoV-19/USA/OR-PROV-229/2020
 A4236G G11083T A14258G C14805T T25655C G26144T

EPI_ISL_482477
 2020-03-18 2020-07-03
 Canada hCoV-19/Canada/NS_61/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C6723T C14408T A23403G G25563T ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_482580
 2020-03-18 2020-07-04
 China hCoV-19/Hangzhou/HZCDC7019/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A2480G C2558T G11083T C14805T G26144T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_483003
 2020-03-18 2020-07-06
 United States hCoV-19/USA/MN-MDH-1282/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25563T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_483550
 2020-03-18 2020-07-07
 Bahrain hCoV-19/Bahrein/BAH-09/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C2939T C3037T C13667T C14408T A23403G C26111T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_483717
 2020-03-18 2020-07-08
 Israel hCoV-19/Israel/n14271/2020
 C241T C3037T G11083T C14408T A23403G G28086A

EPI_ISL_483948
 2020-03-18 2020-07-08
 United Kingdom hCoV-19/England/GSTT-265D387/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_483952
 2020-03-18 2020-07-08
 United Kingdom hCoV-19/England/GSTT-265D3C3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G T23849C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485856 MT739462 MT913075
 2020-03-18 2020-07-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0555/2020
 ATTA1- C241T C1059T C2156T C3037T C14408T A23403G G25563T C26801T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_485857 MT739463 MT913076
 2020-03-18 2020-07-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0556/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C3373A G7553A C14408T A23403G GGG28881AAC GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_485858 MT739464 MT913077
 2020-03-18 2020-07-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0557/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- A1515G C9223T G11083T A12207G C14805T T17247C A17799G G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_485859 MT739465 MT913078
 2020-03-18 2020-07-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0558/2020
 ATTAAA1- C241T C1059T G2288A C3037T C14408T A23403G T25541C G25563T

EPI_ISL_485863 MT739469 MT913082
 2020-03-18 2020-07-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0564/2020
 ATTAAAGGTTTATACC1- C241T C2416T C3037T C10626T C10712T C14408T A23403G G25563T C29733T

EPI_ISL_485864 MT739470 MT913083
 2020-03-18 2020-07-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0565/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_485865 MT739471 MT913084
 2020-03-18 2020-07-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0566/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C3037T C14408T C18877T A23403G G25563T

EPI_ISL_485866 MT739472 MT913085
 2020-03-18 2020-07-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0568/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T C14786T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_488508
 2020-03-18 2020-07-14
 United Kingdom hCoV-19/England/NORT-284293/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C1912T T25202K C26022T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488541
 2020-03-18 2020-07-14
 United Kingdom hCoV-19/England/NORT-2842A2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- A1904G G5180R C8090T C10789T G19999T T25202K A29115G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488757
 2020-03-18 2020-07-14
 United Kingdom hCoV-19/England/NORT-2816C7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G G1599K C9223T G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488762
 2020-03-18 2020-07-14
 United Kingdom hCoV-19/England/NORT-28166D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G C9223T G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488794
 2020-03-18 2020-07-14
 United Kingdom hCoV-19/England/NORT-28172E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488799
 2020-03-18 2020-07-14
 United Kingdom hCoV-19/England/NORT-28173D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A18982T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488805
 2020-03-18 2020-07-14
 United Kingdom hCoV-19/England/NORT-281630/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16329T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488818
 2020-03-18 2020-07-14
 United Kingdom hCoV-19/England/NORT-281797/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A21405T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488823
 2020-03-18 2020-07-14
 United Kingdom hCoV-19/England/NORT-28168B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G431A ATG1605- C20270T A29683T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488828
 2020-03-18 2020-07-14
 United Kingdom hCoV-19/England/NORT-28164F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G C9223T G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_490112
 2020-03-18 2020-07-15
 Czech Republic hCoV-19/Czech Republic/NRL_3969/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_490988
 2020-03-18 2020-07-15
 United States hCoV-19/USA/FL-UW-MAYO68/2020
 ATTAAAGGT1- C36T C241T C3037T C14408T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_490998
 2020-03-18 2020-07-15
 United States hCoV-19/USA/LA-UW-MAYO82/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- AAC34TTT C241T C1059T C3037T C10319T C14408T A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAA29885-

EPI_ISL_491093
 2020-03-18 2020-07-16
 Czech Republic hCoV-19/Czech Republic/NRL_4039/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6828T C14408T A23403G C27247T GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491117
 2020-03-18 2020-07-16
 Czech Republic hCoV-19/Czech Republic/NRL_5201/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491448
 2020-03-18 2020-07-17
 Costa Rica hCoV-19/Costa Rica/INC-0037/2020
 ATTAAAGGTTTATACCTTCCCAG1- A27C C241T C3037T T9630C C14408T C16915T C21638T A23403G G26143A TTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29820-

EPI_ISL_491450
 2020-03-18 2020-07-17
 Costa Rica hCoV-19/Costa Rica/INC-0039/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATC1- C241T C1059T C3037T C7528T C14408T A23403G G25563T G28001T C29585T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_491454
 2020-03-18 2020-07-17
 Costa Rica hCoV-19/Costa Rica/INC-0043/2020
 ATTAAAGG1- A35G C241T C3037T G5230T C14408T A20268G A23403G CCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29835-

EPI_ISL_492116
 2020-03-18 2020-07-20
 Australia hCoV-19/Australia/SAP159/2020
 AT1- C241T C313T C3037T C14408T A23403G G24998T GGG28881AAC G28960T

EPI_ISL_492122
 2020-03-18 2020-07-20
 Australia hCoV-19/Australia/SAP181/2020
 ATTAAAGGTTTA1- C241T C1059T C3037T C14408T A23403G G25563T G25879T

EPI_ISL_492980
 2020-03-18 2020-07-20
 Italy hCoV-19/Italy/NegrarVR_1/2020
 ATT1- C241T C3037T C14408T A23403G GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_493200
 2020-03-18 2020-07-21
 Taiwan hCoV-19/Taiwan/NCKUH-005/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C14408T A23403G C23679T G25563T G28857A -29904AAAAAAAAAAAAAAAAAAAAGAAA

EPI_ISL_496919
 2020-03-18 2020-07-24
 United States hCoV-19/USA/MN-MDH-1333/2020
 A4- C8782T G18816T T28144C G28878A G29742A GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_497736
 2020-03-18 2020-07-25
 Colombia hCoV-19/Colombia/81402/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_497773
 2020-03-18 2020-07-25
 China hCoV-19/Hong Kong/HKU-200723-006/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18348T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_497810
 2020-03-18 2020-07-25
 China hCoV-19/Hong Kong/HKU-200723-043/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C5170T C5974T C14408T C15324T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_497820
 2020-03-18 2020-07-25
 China hCoV-19/Hong Kong/HKU-200723-053/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_497840
 2020-03-18 2020-07-25
 China hCoV-19/Hong Kong/HKU-200723-073/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_497864
 2020-03-18 2020-07-25
 China hCoV-19/Hong Kong/HKU-200723-097/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3261T C5526T C14408T A15984T C20946T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_497870
 2020-03-18 2020-07-25
 China hCoV-19/Hong Kong/HKU-200723-103/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3256C C14408T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498037
 2020-03-18 2020-07-26
 South Korea hCoV-19/Korea/KCDC2136/2020
 A895G C2942T G4390T C8782T C9598T G20134T G24047A T28144C

EPI_ISL_498552
 2020-03-18 2020-07-27
 Lebanon hCoV-19/Lebanon/LB-LR9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAA1- C241T C313T C3037T C9474T C14408T A23403G GGG28881AAC

EPI_ISL_499302
 2020-03-18 2020-07-28
 United Kingdom hCoV-19/England/PORT-2D1F90/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1457T A2480G C2558T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_499702
 2020-03-18 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A635E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- T4885C G7743T G11083T C14805T T21880C G26144T

EPI_ISL_499708
 2020-03-18 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A643D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T G21624T A23403G GGG28881AAC C29870A

EPI_ISL_499709
 2020-03-18 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A644C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_499714
 2020-03-18 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A64C4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G10097A C14408T C22264T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_499716
 2020-03-18 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A64F1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C2558T G6271R G7798K G11083T C14805T G26144T C29870A

EPI_ISL_500503
 2020-03-18 2020-07-29
 United States hCoV-19/USA/NY-UW-MAYO21/2020
 T2C AAC34TTT C241T C1059T C3037T C10851T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_500504
 2020-03-18 2020-07-29
 United States hCoV-19/USA/NY-UW-MAYO23/2020
 AT1- T3G AAC34TTT C241T C1059T C3037T C3587T C14408T A21137G A23403G G25563T -29904AAAAAAAAAAAAA

EPI_ISL_500508
 2020-03-18 2020-07-29
 United States hCoV-19/USA/CO-UW-MAYO33/2020
 AT1- AAC34TTT C241T C1059T C3037T C6629T C14408T T19363C C20132T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_500509
 2020-03-18 2020-07-29
 United States hCoV-19/USA/CO-UW-MAYO37/2020
 A1G A31H AAC34TTT C241T C1059T C3037T C14408T A23403G G25563T CGGAGT29743- A29903-

EPI_ISL_500514
 2020-03-18 2020-07-29
 United States hCoV-19/USA/GA-UW-MAYO62/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- AC35WT C241T C1059T C3037T C14408T A23403G G25563T -29904A

EPI_ISL_500519
 2020-03-18 2020-07-29
 United States hCoV-19/USA/WI-UW-MAYO8/2020
 A1G C36T C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T -29904AAAAAAAAAAA

EPI_ISL_500643
 2020-03-18 2020-07-29
 Australia hCoV-19/Australia/NSW2172/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G578A C8782T C17747T A17858G C18060T A24694T T28144C CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500644
 2020-03-18 2020-07-29
 Australia hCoV-19/Australia/NSW2173/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4788T C14408T C14786T C21233T A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500646
 2020-03-18 2020-07-29
 Australia hCoV-19/Australia/NSW2175/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500676
 2020-03-18 2020-07-29
 Australia hCoV-19/Australia/NSW2228/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17747T A17858G C18060T A24694T T28144C CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500831 MT911796
 2020-03-18 2020-07-29
 United States SARS-CoV-2/human/USA/VA-DCLS-0573/2020
 ATTAAAGGTTTATACC1- C241T C3037T C14408T A20268G C21597T A23403G

EPI_ISL_501223
 2020-03-18 2020-07-31
 Malaysia hCoV-19/Malaysia/8454/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C1663M TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_501224
 2020-03-18 2020-07-31
 Malaysia hCoV-19/Malaysia/8816/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C6312A G11083T C13730T C23929T C28311T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_507021 MT820472
 2020-03-18 2020-07-30
 Saudi Arabia SARS-CoV-2/human/SAU/KAIMRC16/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507022 MT820473
 2020-03-18 2020-07-30
 Saudi Arabia SARS-CoV-2/human/SAU/KAIMRC17/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507054
 2020-03-18 2020-08-03
 United Kingdom hCoV-19/England/LOND-124D0D5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C20844T A23403G C26534T GGG28881AAC AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_507055
 2020-03-18 2020-08-03
 United Kingdom hCoV-19/England/LOND-124D0E4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23403G GGG28881AAC G29645T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_507056
 2020-03-18 2020-08-03
 United Kingdom hCoV-19/England/LOND-124D0F3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- A2480G C2558T G6981A G11083T C14805T A16687G G26144T A28349T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_508124
 2020-03-18 2020-08-04
 Australia hCoV-19/Australia/SAP433/2020
 AT1- C241T C3037T C14408T A23403G G24077T

EPI_ISL_508805 MT834649
 2020-03-18 2020-08-04
 United States SARS-CoV-2/human/USA/FL-BPHL-0601/2020
 ATTA1- C241T C1059T C1917T C3037T C14408T A23403G G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_508807 MT834651
 2020-03-18 2020-08-04
 United States SARS-CoV-2/human/USA/FL-BPHL-0603/2020
 AT1- C8782T C17747T A17858G C18060T A20549G A26108G T28144C TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_508871
 2020-03-18 2020-08-04
 France hCoV-19/France/ARA01890/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCT1- C241T C2070T C3037T C14408T C18263A A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_508882
 2020-03-18 2020-08-04
 France hCoV-19/France/ARA10823/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGG1- C241T C3037T C14408T C15324T A15860G A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_508883
 2020-03-18 2020-08-04
 France hCoV-19/France/ARA10825/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C3037T G11365T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_508909
 2020-03-18 2020-08-04
 France hCoV-19/France/MP01829/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C14408T A23403G GGG28881AAC C29409T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_508999
 2020-03-18 2020-08-04
 France hCoV-19/France/ARA10580/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T G6404T C8208T C14408T C15324T A23403G C29362T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_509000
 2020-03-18 2020-08-04
 France hCoV-19/France/ARA10821/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T T1270C C3037T A11319G C14408T C15324T C16762T A23403G C28818T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_509001
 2020-03-18 2020-08-04
 France hCoV-19/France/ARA10863/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGC1- C241T G2995T C3037T C8293T C14408T T18488C A23403G T24739C A26530G G28086T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_509700 MT844033
 2020-03-18 2020-08-05
 Guatemala SARS-CoV-2/human/GTM/CDC-1233/2020
 C241T C14408T A20268G A23403G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_510290
 2020-03-18 2020-08-06
 Spain hCoV-19/Spain/COV004051/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- G3250K C8782T T9477A C14805T A22151G G25979T T28144C C28511T C28657T C28863T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_510291
 2020-03-18 2020-08-06
 Spain hCoV-19/Spain/COV004052/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C14408T A20268G A23403G C28893T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_510293
 2020-03-18 2020-08-06
 Spain hCoV-19/Spain/COV004054/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C14408T A20268G A23403G CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_510294
 2020-03-18 2020-08-06
 Spain hCoV-19/Spain/COV004055/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T G2398A C3037T C14408T A20268G A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_510296
 2020-03-18 2020-08-06
 Spain hCoV-19/Spain/COV004058/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A20268G A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_510298
 2020-03-18 2020-08-06
 Spain hCoV-19/Spain/COV004060/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C3037T C14408T A20268G A23403G CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_510300
 2020-03-18 2020-08-06
 Spain hCoV-19/Spain/COV004062/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C14408T A20268G A23403G CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_510301
 2020-03-18 2020-08-06
 Spain hCoV-19/Spain/COV004063/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C14408T A20268G A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_510302
 2020-03-18 2020-08-06
 Spain hCoV-19/Spain/COV004064/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T A6313R C14408T A20268G A23403G CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_510303
 2020-03-18 2020-08-06
 Spain hCoV-19/Spain/COV004065/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C3037Y C14408T T17126C A20268G A23403G G28376K CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_511052
 2020-03-18 2020-08-07
 Portugal hCoV-19/Portugal/PT0793/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T C15324T A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511216
 2020-03-18 2020-08-07
 Portugal hCoV-19/Portugal/PT1255/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C1059T C3037T C10582T C14408T G15327T A21817T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511217
 2020-03-18 2020-08-07
 Portugal hCoV-19/Portugal/PT1256/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T C16733T C21621T A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511218
 2020-03-18 2020-08-07
 Portugal hCoV-19/Portugal/PT1257/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C313T C3037T C12815T C14408T C23248T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511219
 2020-03-18 2020-08-07
 Portugal hCoV-19/Portugal/PT1258/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C313T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511220
 2020-03-18 2020-08-07
 Portugal hCoV-19/Portugal/PT1259/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C313T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511221
 2020-03-18 2020-08-07
 Portugal hCoV-19/Portugal/PT1260/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C8782T T9477A C14805T A22151G G25979T T28144C C28657T C28863T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511276
 2020-03-18 2020-08-07
 Portugal hCoV-19/Portugal/PT1317/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3140T C14408T G21019A A23403G G24077T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511277
 2020-03-18 2020-08-07
 Portugal hCoV-19/Portugal/PT1318/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C14408T C17745T C19502G C21575T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511281
 2020-03-18 2020-08-07
 Portugal hCoV-19/Portugal/PT1322/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G370T C3037T C3140T C14408T A23403G G24077T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511283
 2020-03-18 2020-08-07
 Portugal hCoV-19/Portugal/PT1324/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T G11083T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511284
 2020-03-18 2020-08-07
 Portugal hCoV-19/Portugal/PT1325/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511287
 2020-03-18 2020-08-07
 Portugal hCoV-19/Portugal/PT1328/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T A1832G C3037T C14408T C20936T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511288
 2020-03-18 2020-08-07
 Portugal hCoV-19/Portugal/PT1329/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3140T C14408T A23403G G24077T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511289
 2020-03-18 2020-08-07
 Portugal hCoV-19/Portugal/PT1330/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3140T C13059T C14408T A23403G G24077T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511294
 2020-03-18 2020-08-07
 Portugal hCoV-19/Portugal/PT1335/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C8334T C14408T C19017T G20238T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511295
 2020-03-18 2020-08-07
 Portugal hCoV-19/Portugal/PT1336/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511429
 2020-03-18 2020-08-07
 Portugal hCoV-19/Portugal/PT1470/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3267T C5055T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511472
 2020-03-18 2020-08-07
 Portugal hCoV-19/Portugal/PT1513/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G1868A C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511896
 2020-03-18 2020-08-10
 Vietnam hCoV-19/Vietnam/VNHN_1166/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C4733T C14408T A23403G G25563T G28812T TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_512860
 2020-03-18 2020-08-12
 Thailand hCoV-19/Thailand/Bangkok-CONI-0210/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- A895G C2942T G4390T C8782T C9598T G20134T G24047A G27877T T28144C AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_512861
 2020-03-18 2020-08-12
 Thailand hCoV-19/Thailand/Bangkok-CONI-0211/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- A2480G C2558T G11083T C11355T C14805T G26144T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_512862
 2020-03-18 2020-08-12
 Thailand hCoV-19/Thailand/Bangkok-CONI-0212/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- A2480G C2558T C6070T G11083T C14805T G26144T G27201K

EPI_ISL_513298 MT704816
 2020-03-18 2020-07-03
 Germany SARS-CoV-2/human/DEU/SCoV2_1ZK/2020
 C241T C1059T C3037T C14408T A23403G G25563T G26372T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_513310 MT873892
 2020-03-18 2020-08-11
 United Kingdom SARS-CoV-2/human/GBR/USAFSAM-S026/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_513458 MT886332
 2020-03-18 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0047/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAA1- C241T C1059T C3037T C14408T T19527C A23403G G25563T C27964T C28099T AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513459 MT886333
 2020-03-18 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0048/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATT1- G204T C241T C1059T C3037T G8676T C14408T A23403G C23733A G25563T AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513488 MT886362
 2020-03-18 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0077/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATT1- C241T C2416T C3037T C14408T A23403G G25563T G26233T AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513492 MT886366
 2020-03-18 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0081/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAA1- C241T C3037T C14408T C18877T A23403G G25563T AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513773 MW036039
 2020-03-18 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2277/2020
 G331S T967Y G29711T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_514311
 2020-03-18 2020-08-16
 Israel hCoV-19/Israel/CVL-n14271/2020
 ATTAAAGGTTT1- C241T C3037T G11083T C14408T A23403G G28086A

EPI_ISL_514460
 2020-03-18 2020-08-17
 United Kingdom hCoV-19/England/PORT-2D16F5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1457T A2480G C2558T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_514462
 2020-03-18 2020-08-17
 United Kingdom hCoV-19/England/PORT-2D1710/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16289T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_514463
 2020-03-18 2020-08-17
 United Kingdom hCoV-19/England/PORT-2D172F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1457T A2480G C2558T G11083T C14805T C21575T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_514638 MT892985
 2020-03-18 2020-08-17
 United States SARS-CoV-2/human/USA/MN-MDH-1419/2020
 ATTAAAGGTTTATACCT1- G3122T C8782T C17747T A17858G C18060T A24694T C26176T T28144C GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_515312
 2020-03-18 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0025/2020
 ATT1- C241T C3037T C14408T T19776C A23403G GGG28881AAC

EPI_ISL_515527
 2020-03-18 2020-08-19
 Brazil hCoV-19/Brazil/SP-624/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G T27299C GGG28881AAC T29148C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_516082 MT483879
 2020-03-18 2020-05-18
 Italy SARS-CoV-2/human/ITA/43950/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C3037T A6684G C14408T C15126Y A23403G A23884R A26530G GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_516281
 2020-03-18 2020-08-20
 United States hCoV-19/USA/MI-MDHHS-SC21554/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C14408T A23403G G25563T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_516282
 2020-03-18 2020-08-20
 United States hCoV-19/USA/MI-MDHHS-SC21555/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C14408T A23403G G25563T TGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29840-

EPI_ISL_516923
 2020-03-18 2020-08-24
 Montenegro hCoV-19/Montenegro/ChVir-1267392002/2020
 ATTAAAGGTTTA1- C241T C593T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_518868 MT920007
 2020-03-18 2020-08-25
 United States SARS-CoV-2/human/USA/MN-MDH-1474/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- T490A C3177T C8782T G14186T T18736C G18781A G19684T C24034T T26729C C27635T G28077C T28144C A29700G AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_518875 MT920014
 2020-03-18 2020-08-25
 United States SARS-CoV-2/human/USA/MN-MDH-1481/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- T490A C3177T C8782T G14186T T18736C G18781A G19684T C24034T T26729C C27635T G28077C T28144C A29700G AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_518879 MT920018
 2020-03-18 2020-08-25
 United States SARS-CoV-2/human/USA/MN-MDH-1485/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C3464A C8782T A17858G C18060T C22522S A23403G A24694T T28144C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_523939
 2020-03-18 2020-08-27
 Germany hCoV-19/Germany/NW-68/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A G17808T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_523979
 2020-03-18 2020-08-27
 Peru hCoV-19/Peru/ARE-INS-072/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAA1- C241T C3037T G10265A C14408T A23403G GGG28881AAC ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_524645
 2020-03-18 2020-08-28
 United Kingdom hCoV-19/England/LOND-1260C41/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G11083T C14805T G19947T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525540
 2020-03-18 2020-08-31
 France hCoV-19/France/ARA10836/2020
 ATTAAA1- C241T G533T C3037T C14408T C15324T A23403G AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_525541
 2020-03-18 2020-08-31
 France hCoV-19/France/ARA11167/2020
 ATTAAAGGTTTA1- C241T C1059T C3037T G11083T C14408T A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_525542
 2020-03-18 2020-08-31
 France hCoV-19/France/ARA11228/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4647G C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525620
 2020-03-18 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-21196-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T G14580T C15738T A23403G TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_525621
 2020-03-18 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-21493-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- T490A C3177T C8782T T18736C G19684T C24034T T26729C C27635T G28077C T28144C A29700G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_526799
 2020-03-18 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0578/2020
 C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T

EPI_ISL_526801
 2020-03-18 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0580/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T G5542C C14408T A23403G G26063T C27046T GGG28881AAC A29871R AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_526803
 2020-03-18 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0582/2020
 ATTA1- C241T C1059T C3037T C10156T C14408T A23403G G25563T

EPI_ISL_526806
 2020-03-18 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0585/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G204T C241T C1059T C3037T G8676T C14408T C20104T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_528200
 2020-03-18 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42196976/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C8293T C14408T T18488C A23403G T24739C A26530G TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_528201
 2020-03-18 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42197004/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C7735T C14408T C15324T A23403G TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_528202
 2020-03-18 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42197025/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C5869T C14408T C15324T C21575T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528204
 2020-03-18 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42197035/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C5869T C14408T C15324T C21575T A23403G C24198T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528206
 2020-03-18 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42197095/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T G5572T C8208T C14408T C15324T G20940T A23403G ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_528208
 2020-03-18 2020-09-06
 Switzerland hCoV-19/Switzerland/SO-UHB-42197247/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C13957T C14408T C15324T G15982T T18436C A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528212
 2020-03-18 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42197274/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C313T C3037T C14408T A23403G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_528213
 2020-03-18 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42197347/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C7735T C14408T C15324T A23403G TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_528214
 2020-03-18 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42197488/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C3264T C14408T C14757T C15324T C22458T A23403G ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_528215
 2020-03-18 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42197574/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_528216
 2020-03-18 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42197601/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C12076T T12739C C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528217
 2020-03-18 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42197732/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528925
 2020-03-18 2020-09-09
 Italy hCoV-19/Italy/ABR-IZSGC-TE5268/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATC1- C241T C3037T C14408Y A23403G GGG28881AAC AGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29763-

EPI_ISL_530039
 2020-03-18 2020-09-10
 Spain hCoV-19/Spain/MD-LP110/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G16744A A20268G G21190A A23403G T26301G ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_530347
 2020-03-18 2020-09-11
 Czech Republic hCoV-19/Czech Republic/NRL_4038/20/P1
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27247T GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530350
 2020-03-18 2020-09-11
 Czech Republic hCoV-19/Czech Republic/NRL_5553/20/P1
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535831
 2020-03-18 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00225500/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T G991T C3037T C14408T A23403G C25904T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535840
 2020-03-18 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00225956/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25217T G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535850
 2020-03-18 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00226624/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5730T C8208T G9267A T9667C C14408T A23403G G25947T G28361A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535851
 2020-03-18 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00226858/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535858
 2020-03-18 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00227147/2020
 ATTAAA1- C241T G1186A C2416T C3037T C14408T A23403G G25563T TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_535862
 2020-03-18 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00227476/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536527
 2020-03-18 2020-09-16
 Peru hCoV-19/Peru/LIM-INS-130/2020
 AT1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_536539
 2020-03-18 2020-09-16
 Peru hCoV-19/Peru/LIM-INS-144/2020
 ATTAAAG1- C5796T C8782T T9477A C14805T G25979T T28144C C28657T C28863T

EPI_ISL_536540
 2020-03-18 2020-09-16
 Peru hCoV-19/Peru/LIM-INS-145/2020
 ATTAAAG1- C5796T C8782T T9477A C14805T G25979T T28144C C28657T C28863T A29890M

EPI_ISL_536541
 2020-03-18 2020-09-16
 Peru hCoV-19/Peru/LIM-INS-146/2020
 ATTAAAG1- C5796T C8782T T9477A C14805T G25979T T28144C C28657T C28863T

EPI_ISL_536551
 2020-03-18 2020-09-16
 Peru hCoV-19/Peru/LIM-INS-158/2020
 ATTAAAG1- C241T C3037T C14408T A20268G A23403G G24102K T24716Y C27689T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_536554
 2020-03-18 2020-09-16
 Peru hCoV-19/Peru/LIM-INS-161/2020
 ATTAAAG1- C241T C3037T G10265A C14408T G14829T A23403G GGG28881AAC

EPI_ISL_537507
 2020-03-18 2020-09-16
 United States hCoV-19/USA/CA-UCLA-180/2020
 ATTAAAGGTTTA1- C241T C1059T C3037T C10188T C14408T G18525T A23403G T24982C G25563T C27964T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_537603
 2020-03-18 2020-09-16
 United States hCoV-19/USA/CA-UCLA-84/2020
 ATTAAAGGTTTA1- C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_538440
 2020-03-18 2020-09-17
 Singapore hCoV-19/Singapore/135nan/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6310A C6312A G11083T C13730T C19524T C23929T C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539174
 2020-03-18 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8581/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C2558T G11083T C14805T G26144T G28851T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539522
 2020-03-18 2020-09-18
 Spain hCoV-19/Spain/CE-ISCIII-204881/2020
 C241T C1059T C3037T A10991G T11033C C14408T A23403G G24368T G25563T

EPI_ISL_539781
 2020-03-18 2020-09-19
 Czech Republic hCoV-19/Czech Republic/NRL-3968/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541970
 2020-03-18 2020-09-23
 Norway hCoV-19/Norway/01/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G23607T G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545707
 2020-03-18 2020-09-24
 United States hCoV-19/USA/TX-HMH-792/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C15407T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545714
 2020-03-18 2020-09-24
 United States hCoV-19/USA/TX-HMH-793/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547447
 2020-03-18 2020-09-24
 Netherlands hCoV-19/Aruba/AW-RIVM-10114/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547482
 2020-03-18 2020-09-24
 Netherlands hCoV-19/Netherlands/NB-RIVM-10052/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560652
 2020-03-18 2020-09-29
 United Kingdom hCoV-19/England/GSTT-5155/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1457T A2480G C2558T C11074T G11083T C14805T G26144T C29250T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560656
 2020-03-18 2020-09-29
 United Kingdom hCoV-19/England/GSTT-5179/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T14646C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560658
 2020-03-18 2020-09-29
 United Kingdom hCoV-19/England/GSTT-5189/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2305T G2891A A27669G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560660
 2020-03-18 2020-09-29
 United Kingdom hCoV-19/England/GSTT-5196/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568580
 2020-03-18 2020-10-02
 Thailand hCoV-19/Thailand/Bangkok-CONI-0215/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T C3037T C14408T A23403G G25563T

GWHAMMF01000001
 2020-03-18 2020-05-28
 China SARS-CoV-2/human/CHN/Beijing_IME-BJ08/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T G4255T G8653T C14408T A23403G A26507T A26530G G27746T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

GWHAORM01000001
 2020-03-18 2020-09-11
 China SARS-CoV-2/human/CHN/Beijing-P6.2/2020
 C27389T

MT328032
 2020-03-18 2020-04-11
 Greece SARS-CoV-2/human/GRC/10/2020
 C241T C3037T C14408T C14786T T18126C A23403G GGG28881AAC

MT328033
 2020-03-18 2020-04-11
 Greece SARS-CoV-2/human/GRC/12/2020
 C241T C3037T C14408T A23403G C25771A GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

MT328034
 2020-03-18 2020-04-11
 Greece SARS-CoV-2/human/GRC/16/2020
 C8782T C9430T T9477A C14805T A22151G G25979T T28144C C28657T C28863T AAAAAAAAAAAAAAAAAAA29885-

MT328035
 2020-03-18 2020-04-11
 Greece SARS-CoV-2/human/GRC/13/2020
 C241T C3037T C14408T A23403G GGG28881AAC C28887T

MT371571
 2020-03-18 2020-04-15
 Czech Republic SARS-CoV-2/human/CZE/CzechiaMotol_1968/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCAT1- C241T C3037T C14408T A23403G GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

MT371574
 2020-03-18 2020-04-15
 Czech Republic SARS-CoV-2/human/CZE/CzechiaMotol_1967/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCAT1- C241T C3037T C14408T A23403G GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

MT374114
 2020-03-18 2020-04-22
 Taiwan SARS-CoV-2/human/TWN/CGMH-CGU-18/2020
 AT1- C241T C3037T C14408T A23403G G25785T GGG28881AAC

MT374115
 2020-03-18 2020-04-22
 Taiwan SARS-CoV-2/human/TWN/CGMH-CGU-19/2020
 ATTA1- C241T C3037T C14408T C18877T A23403G G25563T A29903-

MT374116
 2020-03-18 2020-04-22
 Taiwan SARS-CoV-2/human/TWN/CGMH-CGU-20/2020
 AT1- C241T C3037T C14408T A23403G C25810T GGG28881AAC

MT459906
 2020-03-18 2020-05-11
 Greece SARS-CoV-2/human/GRC/45_35378/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

MT477840
 2020-03-18 2020-05-14
 United States SARS-CoV-2/human/USA/AK015/2020
 ATTAAAGGTTTA1- T2266C C6027T C7979M A10236G G11083T C14805T T17247C G26144T AAAAAAAAAAAAAA29890-

MT477841
 2020-03-18 2020-05-14
 United States SARS-CoV-2/human/USA/AK016/2020
 ATTAAAGGTTTAT1- T2266C C6027T A10236G G11083T C14805T T17247C G26144T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

MT509486
 2020-03-18 2020-05-22
 United States SARS-CoV-2/human/USA/MD-HP00104/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C6040T C8782T C8950T G12478A T18736C C24034T T26729C G28077C T28144C C28896G C29451T A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT670017
 2020-03-18 2020-06-25
 Chile SARS-CoV-2/human/CHL/2020-26347/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1319A C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706163
 2020-03-18 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-42/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T6814C G11083T C14408T G22203T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706173
 2020-03-18 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-52/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706174
 2020-03-18 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-53/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G15760A C18171A A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706177
 2020-03-18 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-56/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G6884T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706295
 2020-03-18 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-167/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17747T A17858G C18060T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT801001
 2020-03-18 2020-07-27
 Lebanon SARS-CoV-2/human/LBN/LB-R9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAA1- C241T C313T C3037T C9474T C14408T A23403G GGG28881AAC

MT810084 MT598172
 2020-03-18 2020-06-11
 United States SARS-CoV-2/human/USA/MG0987/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT810554
 2020-03-18 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0418-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T A2018G C3037T C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810557
 2020-03-18 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0424-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T A2018G C3037T C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810570
 2020-03-18 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0444-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C5869T C6402T T14133C C14408T A20268G A23403G C27603T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT907517
 2020-03-18 2020-08-20
 Venezuela SARS-CoV-2/human/VEN/8LR/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAA1- C241T C3037T T8336C T9357C C14408T A23403G T24736G A26434G GGG28881AAC GAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29864-

MW030197
 2020-03-18 2020-09-22
 Peru SARS-CoV-2/human/PER/covper054/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGT1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC C29675- ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

MW030208
 2020-03-18 2020-09-22
 Peru SARS-CoV-2/human/PER/covper068/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGT1- C5796T C8782T T9477A C14805T G25979T T28144C C28657T C28863T C29675- ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

MW030209
 2020-03-18 2020-09-22
 Peru SARS-CoV-2/human/PER/covper069/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGT1- C5796T C8782T T9477A C14805T G25979T T28144C C28657T C28863T C29675- ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

MW030210
 2020-03-18 2020-09-22
 Peru SARS-CoV-2/human/PER/covper070/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGT1- C5796T C8782T T9477A C14805T G25979T T28144C C28657T C28863T C29675- ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

MW030218
 2020-03-18 2020-09-22
 Peru SARS-CoV-2/human/PER/covper082/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTC1- C241T C3037T C14408T A20268G A23403G G24102K T24716Y C27689T C29675- ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

MW030221
 2020-03-18 2020-09-22
 Peru SARS-CoV-2/human/PER/covper085/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGT1- C241T C3037T G10265A C14408T G14829T A23403G GGG28881AAC C29675- ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

NMDC60013232
 2020-03-18 2020-06-01
 China hCoV-19/Guangzhou/ID068/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3156T C14408T G15760A A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

NMDC60013257
 2020-03-18 2020-06-01
 China hCoV-19/Guangzhou/ID048/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T1339K A1341M T1343K C6312A C9803T G11083T C13730T C23929T C28311T G28827A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417947
 2020-03-19 2020-03-27
 Democratic Republic of the Congo hCoV-19/DRC/94/2020
 ATT1- C241T C3037T C14408T C15324T A23403G C24023A GTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29825-

EPI_ISL_417948
 2020-03-19 2020-03-27
 Democratic Republic of the Congo hCoV-19/DRC/108/2020
 ATTA1- C241T C3037T C8293T C14408T A16455G T18488C A23403G T24739C A26530G CCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29802-

EPI_ISL_417971 MT334544
 2020-03-19 2020-03-27
 United States SARS-CoV-2/human/USA/UT-00028/2020
 C241T C1059T C3037T C14408T A23403G C24378T G25563T C27964T

EPI_ISL_417974 MT334546
 2020-03-19 2020-03-27
 United States SARS-CoV-2/human/USA/UT-00032/2020
 ATTA1- C241T C3037T C14408T C19328S A23403G

EPI_ISL_417976 MT334547
 2020-03-19 2020-03-27
 United States SARS-CoV-2/human/USA/UT-00033/2020
 C241T C1059T C3037T C6445T C14408T C17639T G22335T A23403G G25563T

EPI_ISL_418629
 2020-03-19 2020-03-30
 Belgium hCoV-19/Belgium/ULG-7773/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3376C C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_418634
 2020-03-19 2020-03-30
 Belgium hCoV-19/Belgium/ULG-8595/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T G21793T A23403G G28690T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_418640
 2020-03-19 2020-03-30
 Belgium hCoV-19/Belgium/ULG-8634/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2773T C3037T C14408T G17193T C18348T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_418646
 2020-03-19 2020-03-30
 Belgium hCoV-19/Belgium/ULG-9572/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G C23679T G25563T G28857A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_418807
 2020-03-19 2020-03-31
 Australia hCoV-19/Australia/QLDID927/2020
 ATTAAA1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_418808
 2020-03-19 2020-03-31
 Australia hCoV-19/Australia/QLDID928/2020
 ATTAAAGGTTTATACCTTCCCAG1- T514C ATG1605- C5512T G19999T C29144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_419308 LC547530
 2020-03-19 2020-04-02
 Japan hCoV-19/Japan/P4-8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T G3025T C3037T C14408T C23248T A23403G C26642T GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_419453
 2020-03-19 2020-04-02
 United Kingdom hCoV-19/Wales/PHWC-248B3/2020
 AT1- C241T T818Y C3037T C6151Y C6990T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_419671
 2020-03-19 2020-04-03
 Austria hCoV-19/Austria/CeMM0018/2020
 C241T C3037T C9223Y C14408T A23403G C25702Y C27046T GGG28881AAC TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_419672
 2020-03-19 2020-04-03
 Austria hCoV-19/Austria/CeMM0019/2020
 C241T C3037T C14408T T19839C A23403G C27393T GGG28881AAC TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_419727 MT451026
 2020-03-19 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC117/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- T490A C3177T C8782T A13951T T18736C G19684T C24034T T26729C C27635T G28077C T28144C A29700G

EPI_ISL_419876 MT451082
 2020-03-19 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC179/2020
 ATTAAAGGTTTATACCT1- -11075TTT G11083T C14805T T17247C A23080R G26144T

EPI_ISL_419877
 2020-03-19 2020-04-03
 Australia hCoV-19/Australia/VIC180/2020
 A1- C1912T

EPI_ISL_419880 MT451086
 2020-03-19 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC184/2020
 AT1- C241T C1059T C3037T C14408T C21711T A23403G G25563T

EPI_ISL_419881 MT451087
 2020-03-19 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC185/2020
 ATTAAAGGTTTA1- G204T C241T C1059T C3037T G8676T C14408T A23403G G25563T

EPI_ISL_419882 MT451088
 2020-03-19 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC186/2020
 ATTAAAGGTT1- G210T A2480G C2558T G11083T C14805T G26144T

EPI_ISL_419883 MT451089
 2020-03-19 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC187/2020
 ATTA1- G210T A2480G C2558T G11083T C14805T G26144T

EPI_ISL_419884 MT451090
 2020-03-19 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC188/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C6312A G11083T C13730T A21267G G22335T C23929T C28311T

EPI_ISL_419885 MT451091
 2020-03-19 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC189/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C8782T C12741T C17747T A17858G C18060T C21642T A24694T T28144C

EPI_ISL_419886 MT451092
 2020-03-19 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC190/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_419887 MT451093
 2020-03-19 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC191/2020
 A1- C241T C679T C3037T C14408T C16386T A23403G GGG28881AAC

EPI_ISL_419888 MT451094
 2020-03-19 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC192/2020
 ATTAAAGGT1- C241T C3037T C14408T A23403G A26530G

EPI_ISL_419889 MT451095
 2020-03-19 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC193/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- G1440A G2891A C7011T

EPI_ISL_419890 MT451096
 2020-03-19 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC194/2020
 AT1- G11083T C14805T G24236T G25183T G26144T T28743C G28881A G29692T

EPI_ISL_419891 MT451097
 2020-03-19 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC195/2020
 ATTAAAGGTT1- C241T C3037T G4180A C14408T C17104T A20268G A23055M A23403G G29734C C29870A

EPI_ISL_419892 MT451098
 2020-03-19 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC196/2020
 ATTA1- C241T C2416T C3037T C14408T G20578T A23403G G25563T

EPI_ISL_419893 MT451099
 2020-03-19 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC197/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G10265A C14408T CA23054YM A23403G GGG28881AAC

EPI_ISL_419894 MT451100
 2020-03-19 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC198/2020
 ATTA1- C241T C3037T C14408T A23403G

EPI_ISL_419895 MT451101
 2020-03-19 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC199/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T T19839C A23403G C24099T GGG28881AAC

EPI_ISL_419896 MT451102
 2020-03-19 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC201/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25563T T27546C

EPI_ISL_419897 MT451103
 2020-03-19 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC202/2020
 ATTAAAGGTTTATACC1- C241T C2416T C3037T C14408T G20578T A23403G G25563T

EPI_ISL_419898 MT451104
 2020-03-19 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC203/2020
 AT1- A2480G C2558T T10480C C11074T G11083T C14805T T26130C G26144T G27217T C27559T

EPI_ISL_419899 MT451105
 2020-03-19 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC204/2020
 ATTAAAGGT1- C8782T C17747T A17858G C18060T A24694T G25340A T28144C

EPI_ISL_419900 MT451106
 2020-03-19 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC205/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C8782T C17747T A17858G C18060T A24694T T28144C

EPI_ISL_419902 MT451108
 2020-03-19 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC207/2020
 ATTA1- C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_420049
 2020-03-19 2020-04-04
 France hCoV-19/France/HF2946/2020
 C241T C1059T C3037T C14408T A23403G G25563T A26459G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_420050
 2020-03-19 2020-04-04
 France hCoV-19/France/HF2948/2020
 C241T C2416T C3037T C14408T C18981T C19884T A23403G G25563T G27593T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_420051
 2020-03-19 2020-04-04
 France hCoV-19/France/IDF2989/2020
 C241T C1059T C3037T A11356T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_420073
 2020-03-19 2020-04-04
 Senegal hCoV-19/Senegal/382/2020
 C241T C2416T C3037T C14408T G22030T A23403G G25563T G26450T

EPI_ISL_420082
 2020-03-19 2020-04-05
 Taiwan hCoV-19/Taiwan/125/2020
 ATTAAA1- C241T C3037T C14408T A23403G A24862G G29862C G29864A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_420298
 2020-03-19 2020-04-06
 United States hCoV-19/USA/NY-NYUMC47/2020
 A2480G C2558T C6990T A9925T G11083T C14805T C17010A G20663A C21575T G26144T G27074A

EPI_ISL_420307
 2020-03-19 2020-04-06
 United States hCoV-19/USA/NY-NYUMC52/2020
 C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29402T G29540A

EPI_ISL_420308
 2020-03-19 2020-04-06
 United States hCoV-19/USA/NY-NYUMC53/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_420309
 2020-03-19 2020-04-06
 United States hCoV-19/USA/NY-NYUMC54/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_420364
 2020-03-19 2020-04-06
 Belgium hCoV-19/Belgium/HP-0319108/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A14270C C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420365
 2020-03-19 2020-04-06
 Belgium hCoV-19/Belgium/OT-0319109/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T C20956T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420366
 2020-03-19 2020-04-06
 Belgium hCoV-19/Belgium/KKN-0319184/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420368
 2020-03-19 2020-04-06
 Belgium hCoV-19/Belgium/CA-0319111/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420369
 2020-03-19 2020-04-06
 Belgium hCoV-19/Belgium/SR-0319112/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T3610C T10150C G11083T C14805T T17247C G25437T G26144T A29598G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420370
 2020-03-19 2020-04-06
 Belgium hCoV-19/Belgium/SC-0319113/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11355T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420564
 2020-03-19 2020-04-06
 Italy hCoV-19/Italy/TE5472/2020
 C15Y C48M C241T C3037T G4255T C4668M T7396W C14408T A23403G A26530G AAAAA29899-

EPI_ISL_420565
 2020-03-19 2020-04-06
 Italy hCoV-19/Italy/TE5476/2020
 TTCG42GCAK C48M A55R C241T AC538WM C3037T CT3768YY A4221W G6364R T7396W A8203R TG8827WK C14408T A23403G T26712K GGG28881AAC AAAA29900-

EPI_ISL_420586
 2020-03-19 2020-04-06
 United States hCoV-19/USA/NY-NYUMC70/2020
 C241T C3037T C14408T A23403G

EPI_ISL_421279
 2020-03-19 2020-04-07
 United States hCoV-19/USA/IN-Lilly-IPB0170-4bc20/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_421281
 2020-03-19 2020-04-07
 United States hCoV-19/USA/IN-Lilly-IPB0170-4bc21/2020
 C241T C3037T C14408T G20397A A23403G

EPI_ISL_421301
 2020-03-19 2020-04-07
 United States hCoV-19/USA/WI-UW-43/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C2695T A10323G G11083T C14805T T17247C G26144T G29262T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421305
 2020-03-19 2020-04-07
 United States hCoV-19/USA/WI-UW-47/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T9697C T18765C G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421315
 2020-03-19 2020-04-07
 United States hCoV-19/USA/WI-UW-57/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11417T T14073C C14408T A23403G A23947G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421318
 2020-03-19 2020-04-07
 United States hCoV-19/USA/WI-UW-60/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3871T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421327
 2020-03-19 2020-04-07
 United States hCoV-19/USA/WI-UW-69/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T G16381A T17877C C20316T G25500T G26211T T28144C G28878A G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421328
 2020-03-19 2020-04-07
 United States hCoV-19/USA/WI-UW-70/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T G16381A T17877C C20316T G25500T T28144C G28878A G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421335
 2020-03-19 2020-04-07
 United States hCoV-19/USA/WI-UW-77/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G558T C8782T G16381A T17877C C20316T G25500T G26211T T28144C G28878A G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421385 MT370912
 2020-03-19 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08427/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_421386 MT370880
 2020-03-19 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08428/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C10369T C14408T C15324T T23284C A23403G G25563T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_421387 MT370917
 2020-03-19 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08429/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T C619T C1059T C3037T C14408T A14912G A23403G G25563T CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_421456
 2020-03-19 2020-04-08
 Portugal hCoV-19/Portugal/PT0053/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C6636T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_421458
 2020-03-19 2020-04-08
 Portugal hCoV-19/Portugal/PT0055/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C1059T C3037T C10582T C14408T G15327T A21817T A23403G G25563T C27942T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_421465
 2020-03-19 2020-04-08
 Portugal hCoV-19/Portugal/PT0062/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- C241T G922A C3037T C14408T T18436C C21242T A23403G GGG28881AAC CGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29754-

EPI_ISL_421484
 2020-03-19 2020-04-08
 Portugal hCoV-19/Portugal/PT0081/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C14408T C21242T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_421552
 2020-03-19 2020-04-08
 United States hCoV-19/USA/WY-WYPHL018/2020
 C8782T C17747T A17858G C18060T A21141G A24694T T28144C

EPI_ISL_421629 MT371026
 2020-03-19 2020-04-09
 United States SARS-CoV-2/human/USA/NY-PV09090/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C3037T C14408T C18877T A23403G G25563T GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_421632 MT370989
 2020-03-19 2020-04-09
 United States SARS-CoV-2/human/USA/NY-PV09098/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T T28105C G29540A GTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29759-

EPI_ISL_421641
 2020-03-19 2020-04-09
 Taiwan hCoV-19/Taiwan/144/2020
 ATTA1- T10G T13A C33A C241T C3037T G11272T C14408T C14585T A23403G TT29845GA ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_422418
 2020-03-19 2020-04-10
 Taiwan hCoV-19/Taiwan/NTU16/2020
 C241T G510A C3037T C4456T C8326T C14408T A20268G A23403G G29734C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_422419
 2020-03-19 2020-04-10
 Taiwan hCoV-19/Taiwan/NTU17/2020
 C241T C1059T A1123G C3037T T7217C C14408T C18568T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_422420
 2020-03-19 2020-04-10
 Taiwan hCoV-19/Taiwan/NTU19/2020
 C241T C3037T C14408T C14585T A23403G A25031W AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_422421
 2020-03-19 2020-04-10
 Taiwan hCoV-19/Taiwan/NTU20/2020
 C241T C635T C1059T C3037T C3743T T11522G C14408T A23403G G25563T C26256T C28603T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_422422
 2020-03-19 2020-04-10
 Taiwan hCoV-19/Taiwan/NTU21/2020
 C241T C3037T C14408T C14585T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_422491 MT371030
 2020-03-19 2020-04-11
 United States SARS-CoV-2/human/USA/NY-PV09115/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T C3037T C3695T A4544T C14408T A20268G A23403G C29743T ACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29768-

EPI_ISL_422492 MT370965
 2020-03-19 2020-04-11
 United States SARS-CoV-2/human/USA/NY-PV09116/2020
 ATTAAAGGTTTA1- C241T C3037T C14408T A23403G GGG28881AAC AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_422494 MT370939
 2020-03-19 2020-04-11
 United States SARS-CoV-2/human/USA/NY-PV09119/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C1059T C3037T C14408T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_422495 MT370944
 2020-03-19 2020-04-11
 United States SARS-CoV-2/human/USA/NY-PV09120/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C1059T C3037T C14408T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_422497 MT370953
 2020-03-19 2020-04-11
 United States SARS-CoV-2/human/USA/NY-PV09122/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C3037T A4544T C14408T A20268G A23403G C29743T GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_422498 MT370981
 2020-03-19 2020-04-11
 United States SARS-CoV-2/human/USA/NY-PV09123/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C1059T C3037T C14408T A23403G G25563T GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_422499 MT370993
 2020-03-19 2020-04-11
 United States SARS-CoV-2/human/USA/NY-PV09125/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCT1- C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_422500 MT371020
 2020-03-19 2020-04-11
 United States SARS-CoV-2/human/USA/NY-PV09126/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATC1- C241T C1059T C3037T C14408T A23403G G25563T G27593T GTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29759-

EPI_ISL_422501 MT371032
 2020-03-19 2020-04-11
 United States SARS-CoV-2/human/USA/NY-PV09127/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C1059T C3037T C14408T A23403G G25563T AATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29770-

EPI_ISL_422502 MT370942
 2020-03-19 2020-04-11
 United States SARS-CoV-2/human/USA/NY-PV09128/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTT1- C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A AATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29770-

EPI_ISL_422503 MT370956
 2020-03-19 2020-04-11
 United States SARS-CoV-2/human/USA/NY-PV09129/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T C1059T C3037T C11916T C14408T C18998T A20553G A23403G G25563T T28151C G29540A TAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29775-

EPI_ISL_422504 MT371010
 2020-03-19 2020-04-11
 United States SARS-CoV-2/human/USA/NY-PV09130/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C1059T C3037T T10831C C14408T A23403G G25563T GTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29759-

EPI_ISL_422505 MT370958
 2020-03-19 2020-04-11
 United States SARS-CoV-2/human/USA/NY-PV09132/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C8078T C14408T G18973T A23403G G25563T GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_422506 MT370975
 2020-03-19 2020-04-11
 United States SARS-CoV-2/human/USA/NY-PV09134/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C1594T C3037T C14408T A23403G G25563T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_422531 MT371012
 2020-03-19 2020-04-11
 United States SARS-CoV-2/human/USA/NY-PV09169/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C11916T C14408T A23403G G25563T GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_422533 MT371001
 2020-03-19 2020-04-11
 United States SARS-CoV-2/human/USA/NY-PV09171/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_422534 MT371005
 2020-03-19 2020-04-11
 United States SARS-CoV-2/human/USA/NY-PV09172/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C1059T C1917T C3037T C14408T G20005A T21458C A23403G G25563T GTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29759-

EPI_ISL_422536 MT371007
 2020-03-19 2020-04-11
 United States SARS-CoV-2/human/USA/NY-PV09177/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T C1059T C3037T C14408T A23403G G25563T GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_422537 MT371037
 2020-03-19 2020-04-11
 United States SARS-CoV-2/human/USA/NY-PV09178/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C3037T C13730T C14408T A23403G G25429T GTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29759-

EPI_ISL_422539 MT370966
 2020-03-19 2020-04-11
 United States SARS-CoV-2/human/USA/NY-PV09180/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C1059T C3037T C14408T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_422540 MT370996
 2020-03-19 2020-04-11
 United States SARS-CoV-2/human/USA/NY-PV09181/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C14408T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_422541 MT370940
 2020-03-19 2020-04-11
 United States SARS-CoV-2/human/USA/NY-PV09182/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C3037T T9172C A10948G C14408T A23403G G26730T GGG28881AAC AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_422542 MT370998
 2020-03-19 2020-04-11
 United States SARS-CoV-2/human/USA/NY-PV09183/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_422546 MT371038
 2020-03-19 2020-04-11
 United States SARS-CoV-2/human/USA/NY-PV09189/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C1917T C3037T C14408T G20005A A23403G G25563T G25740T C28332T A28848G TAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29775-

EPI_ISL_422647 LR877932
 2020-03-19 2020-04-11
 Netherlands hCoV-19/Netherlands/Limburg_8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A11438G C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422679 LR877726
 2020-03-19 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_135/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- C3037T C16762T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422680 LR877749
 2020-03-19 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_136/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422681 LR877750
 2020-03-19 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_137/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- G19999T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422682 LR877745
 2020-03-19 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_138/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422684 LR877738
 2020-03-19 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_144/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T T17247C G26144T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422685 LR877763
 2020-03-19 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_145/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T C18086T G26144T G28842T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422686 LR877752
 2020-03-19 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_150/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G20275A A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422892 LR877944
 2020-03-19 2020-04-11
 Netherlands hCoV-19/Netherlands/NoordBrabant_98/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422893 LR877931
 2020-03-19 2020-04-11
 Netherlands hCoV-19/Netherlands/NoordBrabant_99/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- T7878G C17410T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422914 LR877739
 2020-03-19 2020-04-11
 Netherlands hCoV-19/Netherlands/ZuidHolland_42/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T10516C T13006C C14408T A23403G G25563T C25688T C26882T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422915 LR877740
 2020-03-19 2020-04-11
 Netherlands hCoV-19/Netherlands/ZuidHolland_43/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A11438G C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422916 LR877733
 2020-03-19 2020-04-11
 Netherlands hCoV-19/Netherlands/ZuidHolland_44/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G24077T G28985T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422917 LR877737
 2020-03-19 2020-04-11
 Netherlands hCoV-19/Netherlands/ZuidHolland_45/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G24077T G28985T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422918 LR877734
 2020-03-19 2020-04-11
 Netherlands hCoV-19/Netherlands/ZuidHolland_47/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C12621T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422919 LR877765
 2020-03-19 2020-04-11
 Netherlands hCoV-19/Netherlands/ZuidHolland_48/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C T670C ATG1605- T10830C C17410T C28744T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422920 LR877757
 2020-03-19 2020-04-11
 Netherlands hCoV-19/Netherlands/ZuidHolland_52/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G24077T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_423001 MT293196
 2020-03-19 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW432/2020
 ATTAAAGGTT1- A35T C37H C241T C1059T C3037T C14408T G16912T A23403G G25563T G29553A AAAAA29899-

EPI_ISL_423001 MT293196
 2020-03-19 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW432/2020
 ATTAAAGGTT1- A35T C37H C241T C1059T C3037T C14408T G16912T A23403G G25563T G29553A AAAAA29899-

EPI_ISL_423002 MT293197
 2020-03-19 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW433/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGC1- C241T C3037T C4809T C14408T C18877T A23403G G25563T AAA29901-

EPI_ISL_423002 MT293197
 2020-03-19 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW433/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGC1- C241T C3037T C4809T C14408T C18877T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_423003 MT293198
 2020-03-19 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW434/2020
 ATTAAAGG1- AACC34TTTA C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAA29890-

EPI_ISL_423003 MT293198
 2020-03-19 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW434/2020
 ATTAAAGG1- AACC34TTTA C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAA29890-

EPI_ISL_423004 MT293199
 2020-03-19 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW435/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCT1- C8782T C17747T A17858G C18060T T28144C AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_423004 MT293199
 2020-03-19 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW435/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCT1- C8782T C17747T A17858G C18060T T28144C AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_423005 MT293200
 2020-03-19 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW436/2020
 ATTAAAGGTTTATACCTTCCCAG1- AACC34TTTA G8602A C8782T C17747T A17858G C18060T G26152A T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_423005 MT293200
 2020-03-19 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW436/2020
 ATTAAAGGTTTATACCTTCCCAG1- AACC34TTTA G8602A C8782T C17747T A17858G C18060T G26152A T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_423006 MT293201
 2020-03-19 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW437/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- AACC34TTTA C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_423006 MT293201
 2020-03-19 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW437/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- AACC34TTTA C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_423007 MT293202
 2020-03-19 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW438/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C8782T C10623T C17747T A17858G C18060T T28144C -29904GA

EPI_ISL_423007 MT293202
 2020-03-19 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW438/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C8782T C10623T C17747T A17858G C18060T T28144C -29904GA

EPI_ISL_423011 MT293205
 2020-03-19 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW442/2020
 ATTAAAGGTTTATA1- CCCAGG19- CAAACCAACCAA28T C241T C1059T C3037T C14408T G15760A C18171A A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_423011 MT293205
 2020-03-19 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW442/2020
 ATTAAAGGTTTATA1- CCCAGG19- CAAACCAACCAA28T C241T C1059T C3037T C14408T G15760A C18171A A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_423012 MT293206
 2020-03-19 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW443/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAG1- AA263TG A266T T327C A1815G C8782T A12199G AG13512TT C17747T A17858G C18060T G20580A C21721T C26456T C27498T T28144C -29904AAAAAAAAAAAAAAAAAAAAAAAAA

EPI_ISL_423012 MT293206
 2020-03-19 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW443/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAG1- AA263TG A266T T327C A1815G C8782T A12199G AG13512TT C17747T A17858G C18060T G20580A C21721T C26456T C27498T T28144C -29904AAAAAAAAAAAAAAAAAAAAAAAAA

EPI_ISL_423013 MT293207
 2020-03-19 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW444/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- AAC34TWT C241T C3037T C14408T C23230T A23403G GGG28881AAC AAAAAA29898-

EPI_ISL_423013 MT293207
 2020-03-19 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW444/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- AAC34TWT C241T C3037T C14408T C23230T A23403G GGG28881AAC AAAAAA29898-

EPI_ISL_423014 MT293208
 2020-03-19 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW445/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C8782T C17747T A17858G C18060T T23010C T28144C -29904ANANANANANA

EPI_ISL_423014 MT293208
 2020-03-19 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW445/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C8782T C17747T A17858G C18060T T23010C T28144C -29904ANANANANANA

EPI_ISL_423015 MT293209
 2020-03-19 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW446/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- AACC34HTTH C241T C3037T C14408T C21742T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_423015 MT293209
 2020-03-19 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW446/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- AACC34HTTH C241T C3037T C14408T C21742T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_423016 MT293210
 2020-03-19 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW447/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C8782T C17747T A17858G C18060T T28144C A29903-

EPI_ISL_423016 MT293210
 2020-03-19 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW447/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C8782T C17747T A17858G C18060T T28144C A29903-

EPI_ISL_423017 MT293211
 2020-03-19 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW448/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- CC36TH C5784T C6723T C8782T C16716T C17747T A17858G C18060T C22281T G26730A T28144C AAAA29900-

EPI_ISL_423017 MT293211
 2020-03-19 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW448/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- CC36TH C5784T C6723T C8782T C16716T C17747T A17858G C18060T C22281T G26730A T28144C AAAA29900-

EPI_ISL_423018 MT293212
 2020-03-19 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW449/2020
 ATTAAAGGTTTATACC1- C19A A22T T25G C28T AACC34HTTA C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAA29900-

EPI_ISL_423018 MT293212
 2020-03-19 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW449/2020
 ATTAAAGGTTTATACC1- C19A A22T T25G C28T AACC34HTTA C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAA29900-

EPI_ISL_423019 MT293213
 2020-03-19 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW450/2020
 ATTAAAGGT1- A35H C241T C1059T C3037T G7560A C14408T G19999T G21452T A23403G G25563T AAAAAAA29897-

EPI_ISL_423019 MT293213
 2020-03-19 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW450/2020
 ATTAAAGGT1- A35H C241T C1059T C3037T G7560A C14408T G19999T G21452T A23403G G25563T AAAAAAA29897-

EPI_ISL_423020 MT293214
 2020-03-19 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW451/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTT1- C1059T A2018G C3037T T3628C C14408T A23403G C25549T G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_423020 MT293214
 2020-03-19 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW451/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTT1- C1059T A2018G C3037T T3628C C14408T A23403G C25549T G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_423021 MT293215
 2020-03-19 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW452/2020
 ATTAAAGGTTTATACCTTCCCAGG1- AA34HT C37H C241T C1059T C3037T G7560A C14408T G19999T G21452T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_423021 MT293215
 2020-03-19 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW452/2020
 ATTAAAGGTTTATACCTTCCCAGG1- AA34HT C37H C241T C1059T C3037T G7560A C14408T G19999T G21452T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_423022 MT293216
 2020-03-19 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW453/2020
 ATTAAAGGTTTATACCTTCCCAGG1- AAC34TTT C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAA29884-

EPI_ISL_423022 MT293216
 2020-03-19 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW453/2020
 ATTAAAGGTTTATACCTTCCCAGG1- AAC34TTT C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAA29884-

EPI_ISL_423052
 2020-03-19 2020-04-12
 United Kingdom hCoV-19/England/20134001904/2020
 A2480G C2558T G11083T C14805T T20123Y G26144T

EPI_ISL_423918
 2020-03-19 2020-04-12
 United Kingdom hCoV-19/England/20128000604/2020
 C6402T C8782T T9477A C11674T C14805T G25979T T28144C C28657T C28863T G29402T

EPI_ISL_423952
 2020-03-19 2020-04-12
 United Kingdom hCoV-19/England/20128036004/2020
 C241T C3037T C6363T C8982T C14408T A23403G A24880R G25429T C25916Y

EPI_ISL_424166 MT326174
 2020-03-19 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1620/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTG1- C241T C379A C1059T T2244C C3037T A10761G C14408T A23403G G25563T AAAAAAAA29896-

EPI_ISL_424169 MT326177
 2020-03-19 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1538/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTG1- TCAT221GTGA C8782T C17747T A17858G C18060T T28144C A29903-

EPI_ISL_424170 MT326178
 2020-03-19 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1595/2020
 C241T C1059T A2018G C3037T T3628C C14408T A23403G C25549T G25563T

EPI_ISL_424172 MT326180
 2020-03-19 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1575/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTG1- C222- C241T C1059T C3037T C6040T G7675T C10626T C14408T A23403G G25563T A29869T -29904ANANANANANANA

EPI_ISL_424211 MT326136
 2020-03-19 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1689/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCG1- C241T C1059T C3037T C14408T A23403G G25563T G29553A G29868D

EPI_ISL_424212 MT326137
 2020-03-19 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1715/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C241T C1059T C3037T C14408T A23403G G25563T G28827T G29553A AAAAAAAAAA29894-

EPI_ISL_424250 MT326086
 2020-03-19 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1785/2020
 ATTAAAGGTTTATA1- AACC34HTTH A6821G C8092T C8782T C17747T A17858G C18060T C26037T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_424379
 2020-03-19 2020-04-13
 Iceland hCoV-19/Iceland/355/2020
 T514C ATG1605-

EPI_ISL_424380
 2020-03-19 2020-04-13
 Iceland hCoV-19/Iceland/356/2020
 C241T C3037T A10323G C14408T A20268G A23403G

EPI_ISL_424381
 2020-03-19 2020-04-13
 Iceland hCoV-19/Iceland/357/2020
 C5142T G11083T C14805T T17247C G26144T

EPI_ISL_424382
 2020-03-19 2020-04-13
 Iceland hCoV-19/Iceland/358/2020
 C5142T G11083T C14805T T17247C G26144T

EPI_ISL_424383
 2020-03-19 2020-04-13
 Iceland hCoV-19/Iceland/359/2020
 C241T C3037T C5730T G10870T C14408T G15850T A23403G G23587T GGG28881AAC

EPI_ISL_424384
 2020-03-19 2020-04-13
 Iceland hCoV-19/Iceland/360/2020
 C241T C3037T C3253T C14408T A23403G C24054T A25958G C27046T GGG28881AAC

EPI_ISL_424385
 2020-03-19 2020-04-13
 Iceland hCoV-19/Iceland/361/2020
 C241T C3037T C14408T A23403G A26530G

EPI_ISL_424389
 2020-03-19 2020-04-13
 Iceland hCoV-19/Iceland/365/2020
 C241T C3037T A8072G C14408T A23403G GGG28881AAC

EPI_ISL_424390
 2020-03-19 2020-04-13
 Iceland hCoV-19/Iceland/366/2020
 C241T C3037T C14408T A23403G G27430A GGG28881AAC

EPI_ISL_424391
 2020-03-19 2020-04-13
 Iceland hCoV-19/Iceland/367/2020
 C241T C2455T C3037T C10450T C14408T A23403G

EPI_ISL_424392
 2020-03-19 2020-04-13
 Iceland hCoV-19/Iceland/368/2020
 C241T C3037T A10323G C14408T A20268G A23403G

EPI_ISL_424393
 2020-03-19 2020-04-13
 Iceland hCoV-19/Iceland/369/2020
 C241T C3037T A10323G C14408T A20268G A23403G

EPI_ISL_424396
 2020-03-19 2020-04-13
 Iceland hCoV-19/Iceland/372/2020
 C1218T C26907T G27806T G29711T

EPI_ISL_424398
 2020-03-19 2020-04-13
 Iceland hCoV-19/Iceland/374/2020
 C241T C1059T C3037T C14408T A23403G G25563T G28209T

EPI_ISL_424400
 2020-03-19 2020-04-13
 Iceland hCoV-19/Iceland/376/2020
 C241T C1059T C1302T C2939T C3037T T11191G C14408T A23403G G25563T

EPI_ISL_424401
 2020-03-19 2020-04-13
 Iceland hCoV-19/Iceland/377/2020
 C5142T G11083T C14805T T17247C G26144T

EPI_ISL_424402
 2020-03-19 2020-04-13
 Iceland hCoV-19/Iceland/378/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T

EPI_ISL_424404
 2020-03-19 2020-04-13
 Iceland hCoV-19/Iceland/380/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_424406
 2020-03-19 2020-04-13
 Iceland hCoV-19/Iceland/382/2020
 C241T C3037T A10323G C14408T A20268G A23403G

EPI_ISL_424410
 2020-03-19 2020-04-13
 Iceland hCoV-19/Iceland/386/2020
 C241T C3037T C14408T A23403G C24054T A25958G C27046T GGG28881AAC

EPI_ISL_424411
 2020-03-19 2020-04-13
 Iceland hCoV-19/Iceland/387/2020
 C241T C3037T C3253T G4280A C14408T A23403G C24054T A25958G C27046T GGG28881AAC

EPI_ISL_424412
 2020-03-19 2020-04-13
 Iceland hCoV-19/Iceland/388/2020
 C241T C3037T C3253T C14408T A23403G C24054T A25958G C27046T GGG28881AAC

EPI_ISL_424413
 2020-03-19 2020-04-13
 Iceland hCoV-19/Iceland/389/2020
 C241T C1059T A2182G C3037T TGGTTG11271- C14408T A23403G G25563T

EPI_ISL_424414
 2020-03-19 2020-04-13
 Iceland hCoV-19/Iceland/390/2020
 C241T C3037T A10323G C14408T A20268G A23403G

EPI_ISL_424415
 2020-03-19 2020-04-13
 Iceland hCoV-19/Iceland/391/2020
 C241T C913T C3037T C14408T A23403G GGG28881AAC -29686C

EPI_ISL_424419
 2020-03-19 2020-04-13
 Iceland hCoV-19/Iceland/395/2020
 C241T C3037T A10323G C14408T A20268G A23403G

EPI_ISL_424422
 2020-03-19 2020-04-13
 Iceland hCoV-19/Iceland/398/2020
 C241T C3037T C14408T C15324T C21575T A23403G

EPI_ISL_424423
 2020-03-19 2020-04-13
 Iceland hCoV-19/Iceland/399/2020
 C241T C3037T C3253T C14408T A23403G C24054T A25958G C27046T GGG28881AAC

EPI_ISL_424424
 2020-03-19 2020-04-13
 Iceland hCoV-19/Iceland/400/2020
 C241T C2455T C3037T C10450T C14408T A23403G

EPI_ISL_424425
 2020-03-19 2020-04-13
 Iceland hCoV-19/Iceland/401/2020
 C241T C2455T C3037T A4060G C10450T C14408T A23403G

EPI_ISL_424426
 2020-03-19 2020-04-13
 Iceland hCoV-19/Iceland/402/2020
 C241T C3037T C3253T C14408T A23403G C24054T A25958G C27046T GGG28881AAC

EPI_ISL_424429
 2020-03-19 2020-04-13
 Iceland hCoV-19/Iceland/405/2020
 C1457T C8782T T9445C T17531C C17747T A17858G C18060T G18756T A24694T T28144C

EPI_ISL_424434
 2020-03-19 2020-04-13
 Iceland hCoV-19/Iceland/410/2020
 C241T C3037T C3253T C14408T A23403G C24054T A25958G C27046T GGG28881AAC

EPI_ISL_424435
 2020-03-19 2020-04-13
 Iceland hCoV-19/Iceland/411/2020
 A2480G C2558T G11083T C14805T A16410G G26144T

EPI_ISL_424436
 2020-03-19 2020-04-13
 Iceland hCoV-19/Iceland/412/2020
 C8782T T9445C G11083T C17747T A17858G C18060T A24694T T28144C

EPI_ISL_424437
 2020-03-19 2020-04-13
 Iceland hCoV-19/Iceland/413/2020
 C5142T G11083T C14805T T17247C G26144T

EPI_ISL_424438
 2020-03-19 2020-04-13
 Iceland hCoV-19/Iceland/414/2020
 C5142T G11083T C14805T G15380T T17247C G26144T G29260T

EPI_ISL_424439
 2020-03-19 2020-04-13
 Iceland hCoV-19/Iceland/415/2020
 G1440A G2891A A4140G

EPI_ISL_424440
 2020-03-19 2020-04-13
 Iceland hCoV-19/Iceland/416/2020
 C241T C3037T A10323G C14408T A20268G C21359T A23403G C25603T

EPI_ISL_424441
 2020-03-19 2020-04-13
 Iceland hCoV-19/Iceland/417/2020
 C5142T G11083T C14805T T17247C C25002T G26144T

EPI_ISL_424442
 2020-03-19 2020-04-13
 Iceland hCoV-19/Iceland/418/2020
 C241T C3037T C13862T C14408T A23403G C28836T

EPI_ISL_424443
 2020-03-19 2020-04-13
 Iceland hCoV-19/Iceland/419/2020
 A30T C241T C3037T C3253T C14408T A23403G C24054T A25958G C27046T G28812T GGG28881AAC

EPI_ISL_424445
 2020-03-19 2020-04-13
 Iceland hCoV-19/Iceland/421/2020
 C5142T G11083T C14805T C15240T T17247C G26144T

EPI_ISL_424447
 2020-03-19 2020-04-13
 Iceland hCoV-19/Iceland/423/2020
 C241T C3037T A10323G C14408T A20268G A23403G

EPI_ISL_424476
 2020-03-19 2020-04-13
 Iceland hCoV-19/Iceland/452/2020
 C241T C3037T C3253T C14408T A23403G C24054T A25958G C27046T GGG28881AAC

EPI_ISL_424641
 2020-03-19 2020-04-13
 Belgium hCoV-19/Belgium/ULG-10080/2020
 A1515G C9223T C9438T G11083T C14805T T17247C G26144T

EPI_ISL_425139 MT582456
 2020-03-19 2020-04-14
 Germany SARS-CoV-2/human/DEU/NRW-44/2020
 C241T T3011C C3037T T11182C C14408T A23403G

EPI_ISL_425199
 2020-03-19 2020-04-14
 Spain hCoV-19/Spain/Valencia75/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T8983A C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425201
 2020-03-19 2020-04-14
 Spain hCoV-19/Spain/Valencia77/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C29144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425292
 2020-03-19 2020-04-14
 United Kingdom hCoV-19/England/CAMB-74465/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_425293
 2020-03-19 2020-04-14
 United Kingdom hCoV-19/England/CAMB-74474/2020
 C583T A700G A2480G C2558T C7279T G11083T C14805T A15405G G26144T C27331T

EPI_ISL_425295
 2020-03-19 2020-04-14
 United Kingdom hCoV-19/England/CAMB-74492/2020
 C241T C2416T C3037T C14408T G20578T A23403G G25563T

EPI_ISL_425361
 2020-03-19 2020-04-14
 United Kingdom hCoV-19/England/CAMB-74C5E/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_425373
 2020-03-19 2020-04-14
 United Kingdom hCoV-19/England/CAMB-74D5B/2020
 C241T C3037T C14408T A23403G G25793T T27299C GGG28881AAC T29148C

EPI_ISL_425374
 2020-03-19 2020-04-14
 United Kingdom hCoV-19/England/CAMB-74D6A/2020
 C241T C3037T C14408T C18568T A23403G A26530G

EPI_ISL_425496
 2020-03-19 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10E0D4/2020
 G431A ATG1605- C20270T G27214T A29683T

EPI_ISL_425497
 2020-03-19 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10E0E3/2020
 C241T C3037T A7877G T11798C C14408T C16289T A23403G G25429T

EPI_ISL_425498
 2020-03-19 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10E0F2/2020
 ATG1605- G2051A T4949C T10836C C16887T

EPI_ISL_425527
 2020-03-19 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10E308/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_425728
 2020-03-19 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR196/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C12710T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425733
 2020-03-19 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR202/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C3787T C16362T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425735
 2020-03-19 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR205/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C8782T T18736C G19684T C24034T T26729C C26781T C27635T G28077C T28144C A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425745
 2020-03-19 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR218/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- A27759G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425750
 2020-03-19 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR235/2020
 C241T C3037T C14408T A20268G A23403G C29640T

EPI_ISL_425755
 2020-03-19 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR268/2020
 ATG1605- C6031T C6696T A9737G C11001T C29095T

EPI_ISL_425863
 2020-03-19 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB063/2020
 A18640T C24198T

EPI_ISL_425866
 2020-03-19 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB067/2020
 C241T C1059T C1076T C3037T C10582T C14408T A23403G G25563T C26461T

EPI_ISL_426313
 2020-03-19 2020-04-15
 United States hCoV-19/USA/NY-Wadsworth-22503-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426315
 2020-03-19 2020-04-15
 United States hCoV-19/USA/NY-Wadsworth-22874-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T A3388G C14408T C16289T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426358
 2020-03-19 2020-04-16
 Czech Republic hCoV-19/Czech Republic/Seq5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCAT1- C241T C3037T C14408T A21643C C22432T A23403G GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_426436
 2020-03-19 2020-04-16
 United States hCoV-19/USA/WA_0418/2020
 C3784T C8782T T11320C C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426437
 2020-03-19 2020-04-16
 United States hCoV-19/USA/WA_0422/2020
 C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426438
 2020-03-19 2020-04-16
 United States hCoV-19/USA/WA_0427/2020
 C8782T T11320C C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426439
 2020-03-19 2020-04-16
 United States hCoV-19/USA/WA_0428/2020
 C8782T T11320C C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426440
 2020-03-19 2020-04-16
 United States hCoV-19/USA/WA_0429/2020
 C8782T T11320C C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426441
 2020-03-19 2020-04-16
 United States hCoV-19/USA/WA_0432/2020
 C8782T C17747T A17858G C18060T G23120T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426442
 2020-03-19 2020-04-16
 United States hCoV-19/USA/WA_0434/2020
 C8782T T11320C C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426443
 2020-03-19 2020-04-16
 United States hCoV-19/USA/WA_0440/2020
 C8782T T11320C C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426444
 2020-03-19 2020-04-16
 United States hCoV-19/USA/WA_0441/2020
 C8782T T11320C G17302T C17747T A17858G T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426445
 2020-03-19 2020-04-16
 United States hCoV-19/USA/WA_0442/2020
 C8782T T11320C C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426446
 2020-03-19 2020-04-16
 United States hCoV-19/USA/WA_0447/2020
 C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426447
 2020-03-19 2020-04-16
 United States hCoV-19/USA/WA_0448/2020
 C8782T T11320C C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426449
 2020-03-19 2020-04-16
 United States hCoV-19/USA/WA_0478/2020
 C8782T T11320C C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426450
 2020-03-19 2020-04-16
 United States hCoV-19/USA/WA_0480/2020
 C8782T T11320C C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426451
 2020-03-19 2020-04-16
 United States hCoV-19/USA/WA_0484/2020
 C8782T T11320C C17747T A17858G C18060T T28144C C28873T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426452
 2020-03-19 2020-04-16
 United States hCoV-19/USA/WA_0711/2020
 C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426511
 2020-03-19 2020-04-17
 United States hCoV-19/USA/AZ-TG268770/2020
 C241T C1059T C3037T C11916T C14408T A23403G G25563T T27919C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426525
 2020-03-19 2020-04-17
 United States hCoV-19/USA/AZ-TG269440/2020
 C241T C1059T C3037T C14408T A23403G G25563T G28621A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426538
 2020-03-19 2020-04-17
 United States hCoV-19/USA/AZ-TG271856/2020
 C241T C313T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426643 MT451225
 2020-03-19 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC334/2020
 ATTA1- C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_427704
 2020-03-19 2020-04-19
 Australia hCoV-19/Australia/NSW76/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C2558T G11083T C14805T G26144T ATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29677-

EPI_ISL_428264
 2020-03-19 2020-04-20
 United States hCoV-19/USA/WI-UW-168/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428265
 2020-03-19 2020-04-20
 United States hCoV-19/USA/WI-UW-169/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428266
 2020-03-19 2020-04-20
 United States hCoV-19/USA/WI-UW-170/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428267
 2020-03-19 2020-04-20
 United States hCoV-19/USA/WI-UW-171/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428268
 2020-03-19 2020-04-20
 United States hCoV-19/USA/WI-UW-172/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C18877T G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428672 MT371049
 2020-03-19 2020-04-21
 Sri Lanka SARS-CoV-2/human/LKA/COV91/2020
 C241T C3037T G4201T C14408T A23403G C26527T

EPI_ISL_428718
 2020-03-19 2020-04-21
 Turkey hCoV-19/Turkey/HSGM-5770/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C8782T G14122T G28878A G29742T

EPI_ISL_428872
 2020-03-19 2020-04-22
 Russia hCoV-19/Russia/Moscow-71605/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_428873
 2020-03-19 2020-04-22
 Russia hCoV-19/Russia/Sverdlovsk-71904/2020
 C241T C1059T C3037T G5432T C14408T G20709T A23403G G25563T

EPI_ISL_428876
 2020-03-19 2020-04-22
 Russia hCoV-19/Russia/Moscow-71604/2020
 A187G C241T C3037T G7798T C9246T C14408T A23403G

EPI_ISL_428877
 2020-03-19 2020-04-22
 Russia hCoV-19/Russia/Moscow-71602/2020
 C241T C635T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_428879
 2020-03-19 2020-04-22
 Russia hCoV-19/Russia/Sverdlovsk-71905/2020
 C241T C2933T C3037T G4255T C14408T G14511T G16935T A23403G A26530G

EPI_ISL_428880
 2020-03-19 2020-04-22
 Russia hCoV-19/Russia/Khabarovsk-71403/2020
 C241T C2416T C3037T C14408T A23403G G25563T

EPI_ISL_428890
 2020-03-19 2020-04-22
 Russia hCoV-19/Russia/Sverdlovsk-71903/2020
 C241T C3037T C14408T C15324T A23403G G28374A C29171T

EPI_ISL_428921
 2020-03-19 2020-04-22
 Russia hCoV-19/Russia/Tver-72601/2020
 C241T C3037T C14408T C16750T A23403G

EPI_ISL_429200
 2020-03-19 2020-04-23
 Switzerland hCoV-19/Switzerland/GE5737/2020
 ATTAAAG1- C241T C3037T C14408T G16912T T19839C A23403G GGG28881AAC G29751A

EPI_ISL_429718
 2020-03-19 2020-04-24
 Luxembourg hCoV-19/Luxembourg/LNS1995247/2020
 C241T C3037T C3261T C14408T A23403G GGG28881AAC TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_429724
 2020-03-19 2020-04-24
 Luxembourg hCoV-19/Luxembourg/LNS9984061/2020
 C241T C3037T C3619T C14408T C15324T A20374G A23403G C27276T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_430007 MT811558
 2020-03-19 2020-04-24
 Jordan SARS-CoV-2/human/JOR/SEARCH-0049-JOR/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C900T C3037T C14408T A23403G GGG28881AAC CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_430011 MT811561
 2020-03-19 2020-04-24
 Jordan SARS-CoV-2/human/JOR/SEARCH-0053-JOR/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- A7479G G11083T C14805T T17247C C25572T G26144T C28887T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_430210 MT632515
 2020-03-19 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S172/2020
 C7564T C8782T T11320C C17747T A17858G C18060T

EPI_ISL_430212 MT632556
 2020-03-19 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S174/2020
 C8782T T11320C C17747T A17858G C18060T T28144C

EPI_ISL_430213 MT632578
 2020-03-19 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S175/2020
 C8782T T11320C C17747T A17858G C18060T T28144C

EPI_ISL_430214 MT632573
 2020-03-19 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S176/2020
 C8782T C17747T A17858G C18060T G23120T T28144C

EPI_ISL_430215 MT632557
 2020-03-19 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S177/2020
 C8782T T11320C C17747T A17858G C18060T T28144C

EPI_ISL_430219 MT632620
 2020-03-19 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S181/2020
 C8782T T11320C C17747T A17858G C18060T T28144C

EPI_ISL_430221 MT632574
 2020-03-19 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S183/2020
 C8782T T11320C C17747T A17858G C18060T T28144C

EPI_ISL_430222 MT632594
 2020-03-19 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S184/2020
 C8782T T11320C C17747T A17858G C18060T T28144C

EPI_ISL_430223 MT632550
 2020-03-19 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S185/2020
 C8782T T11320C C17747T A17858G C18060T T28144C

EPI_ISL_430231 MT632538
 2020-03-19 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S193/2020
 C8782T G11083T C17747T A17858G C18060T T28144C C29733T

EPI_ISL_430248 MT632551
 2020-03-19 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S210/2020
 C8782T T11320C C17747T A17858G C18060T T28144C

EPI_ISL_430250 MT632554
 2020-03-19 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S212/2020
 C8782T T11320C C17747T A17858G C18060T T28144C

EPI_ISL_430259 MT632584
 2020-03-19 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S221/2020
 C8782T C17747T A17858G C18060T G23120T T28144C

EPI_ISL_430262 MT632539
 2020-03-19 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S224/2020
 C8782T T11320C C17747T A17858G C18060T T28144C C28873T

EPI_ISL_430267 MT632572
 2020-03-19 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S229/2020
 C8782T T11320C C17747T A17858G C18060T T28144C

EPI_ISL_430268 MT632561
 2020-03-19 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S230/2020
 C8782T T11320C C17747T A17858G C18060T T28144C

EPI_ISL_431015
 2020-03-19 2020-04-29
 United States hCoV-19/USA/AK-PHL013/2020
 ATTAAAGGTTTA1- C241T C3037T C6504T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_431783
 2020-03-19 2020-04-29
 China hCoV-19/Fujian/IM3520016T/2020
 ATTAAAGGTTTATACC1- A3531G C6312A A10508G G11083T C13730T C23929T C28311T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_434470
 2020-03-19 2020-04-29
 Greece hCoV-19/Greece/155/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGG28881AAC TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_434481
 2020-03-19 2020-04-29
 Greece hCoV-19/Greece/146/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- GTTATG515- A2480G C2558T G11083T C14805T G26144T TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_434586
 2020-03-19 2020-04-30
 United States hCoV-19/USA/MD-HP00036/2020
 C241T C1059T C3037T G11083T C14408T G15594A A23403G G25563T

EPI_ISL_434638
 2020-03-19 2020-04-30
 United States hCoV-19/USA/MD-HP00041/2020
 C241T C1059T C3037T C14408T A23403G G25563T T28393C

EPI_ISL_434785
 2020-03-19 2020-05-01
 United States hCoV-19/USA/TX-HMH076/2020
 C241T C3037T C14408T C18877T A23403G G25563T

EPI_ISL_434787
 2020-03-19 2020-05-01
 United States hCoV-19/USA/TX-HMH078/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_434788
 2020-03-19 2020-05-01
 United States hCoV-19/USA/TX-HMH079/2020
 T490A C3177T C6040T C8782T C8950T G12478A T18736C C24034T T26729C G28077C T28144C C28896G C29451T A29700G

EPI_ISL_434800
 2020-03-19 2020-05-01
 United States hCoV-19/USA/TX-HMH095/2020
 C241T C3037T C14408T G15243T A23403G

EPI_ISL_434801
 2020-03-19 2020-05-01
 United States hCoV-19/USA/TX-HMH096/2020
 T490A C3177T C6040T C8782T C8950T G12478A T18736C C24034T T26729C G28077C T28144C C28896G C29451T A29700G

EPI_ISL_434803
 2020-03-19 2020-05-01
 United States hCoV-19/USA/TX-HMH098/2020
 C241T C3037T C14408T A23403G C26947T T27299C GGG28881AAC T29148C

EPI_ISL_434805
 2020-03-19 2020-05-01
 United States hCoV-19/USA/TX-HMH100/2020
 C241T C3037T A10840G C14408T G15243T A23403G

EPI_ISL_434808
 2020-03-19 2020-05-01
 United States hCoV-19/USA/TX-HMH103/2020
 C241T C3037T C14408T G15243T A23403G

EPI_ISL_435282
 2020-03-19 2020-05-04
 Indonesia hCoV-19/Indonesia/JKT-EIJK0317/2020
 A1C T3C A1646G C14636T A29872G A29874C AAA29876TCC -29881ATTTC A29884G AA29886TC -29890GTCATTTTGCTG A29892T AA29895GC A29898T AAA29900TTG

EPI_ISL_435425
 2020-03-19 2020-05-04
 Hungary hCoV-19/Hungary/SRC-1788lc/2020
 C241T C3037T C14408T A20268G A23403G

EPI_ISL_435670
 2020-03-19 2020-05-05
 United States hCoV-19/USA/CA-SCCPHD-UC191/2020
 

EPI_ISL_436077 MT434808
 2020-03-19 2020-05-05
 United States SARS-CoV-2/human/USA/NY-CDC-SURV0982NYC/2020
 C241T C1059T C3037T C10015T C11916T C14408T C18744T C18998T A23403G G25563T G29540A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_436078 MT434809
 2020-03-19 2020-05-05
 United States SARS-CoV-2/human/USA/NY-CDC-SURV0983NYC/2020
 C241T C1059T C4113T C11916T C14408T C18998T A23403G G25563T G29540A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_436079 MT434817
 2020-03-19 2020-05-05
 United States SARS-CoV-2/human/USA/NY-CDC-SURV0985NYC/2020
 C241T AAGTCATTT686- C1059T G2808A C14408T A23403G G25563T A26433G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_436082 MT434812
 2020-03-19 2020-05-05
 United States SARS-CoV-2/human/USA/NY-CDC-SURV1000NYC/2020
 C241T C1059T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_436100
 2020-03-19 2020-05-06
 Taiwan hCoV-19/Taiwan/TSGH-15/2020
 A1C TAAAG3CTTCC T9A T11C C241T C3037T C14408T A20268G A23403G G29473A G29734C -29898AAAAATTTTAAAAAAAAAAAAAAAAAAAAAAAAATT

EPI_ISL_436101
 2020-03-19 2020-05-06
 Taiwan hCoV-19/Taiwan/TSGH-16/2020
 C6695A C8782T C17747T A17858G C18060T A24694T T28144C

EPI_ISL_436102
 2020-03-19 2020-05-06
 Taiwan hCoV-19/Taiwan/TSGH-17/2020
 T5409A G6865T G13627T C14805T C15540T G22361T G25302T G25690T C25692A G26144T A28338G A29827G -29900AAACAAAAAAAAAAAAAAAAATAAAAAAAAAAAAAAAAAAAAACAAAAC

EPI_ISL_436245
 2020-03-19 2020-05-06
 Spain hCoV-19/Spain/Valencia150/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A20268G C23114T A23403G G29734C C29802T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_436246
 2020-03-19 2020-05-06
 Spain hCoV-19/Spain/Valencia151/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C2232T C2508T C11074T G11083T T15888C G26144T C28511A CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_436247
 2020-03-19 2020-05-06
 Spain hCoV-19/Spain/Valencia152/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C3037T C14408T A17202G A20268G A23403G TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_436248
 2020-03-19 2020-05-06
 Spain hCoV-19/Spain/Valencia153/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C8782T C26088T T28144C CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_436249
 2020-03-19 2020-05-06
 Spain hCoV-19/Spain/Valencia154/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C313T C3037T C7318T C14408T G23009T A23403G C26907A GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_436250
 2020-03-19 2020-05-06
 Spain hCoV-19/Spain/Valencia155/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A20268G C21205A A23403G G29734C GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_436251
 2020-03-19 2020-05-06
 Spain hCoV-19/Spain/Valencia156/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G3242T C14408T A20268G A23403G G24075T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_436252
 2020-03-19 2020-05-06
 Spain hCoV-19/Spain/Valencia157/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1087G G1598A C3037T T5124G C12970T C14408T A20268G G21220T A23403G G29734C AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_436255
 2020-03-19 2020-05-06
 Spain hCoV-19/Spain/Valencia160/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C313T C3037T C7318T C14408T G23009T A23403G C26907A GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_436271
 2020-03-19 2020-05-06
 Spain hCoV-19/Spain/Valencia176/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C14214T C14408T A23403G C29144T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_436272
 2020-03-19 2020-05-06
 Spain hCoV-19/Spain/Valencia177/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C14408T G19542T A20268G A23403G TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_436500
 2020-03-19 2020-05-06
 United States hCoV-19/USA/PA-MGSC52-05/2020
 C241T C3037T C14408T G20679T A23403G GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_436718
 2020-03-19 2020-05-07
 Italy hCoV-19/Italy/TE5473/2020
 T54G TT77KY A81W A113R C241T AC538WM C3037T G4196S C4668M T7396W TG8827WK C14408T C22277M A23403G C27046Y C27335Y GGG28881AAC AA29902-

EPI_ISL_436825 MT439256
 2020-03-19 2020-05-06
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20156/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C10319T C14408T A23403G G25563T C27964T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_436827 MT439251
 2020-03-19 2020-05-06
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20171/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23403G C26801G TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_437255
 2020-03-19 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0056/2020
 C241T C1059T C3037T C14408T C15857T A20334G A23403G G25563T

EPI_ISL_437318
 2020-03-19 2020-05-08
 Turkey hCoV-19/Turkey/HSGM-1444/2020
 ATTAAA1- C884T G1397A T5182C C5477T C5736T C6402T G8653T G11083T T28688C G29742T

EPI_ISL_437319
 2020-03-19 2020-05-08
 Turkey hCoV-19/Turkey/HSGM-1490/2020
 ATTAAA1- C228T G1397A G9479T A9514G G11083T G19285A C21789T C26549T G26720C T28688C T28835C G29742T AAAAAA29898-

EPI_ISL_437320
 2020-03-19 2020-05-08
 Turkey hCoV-19/Turkey/HSGM-1492/2020
 ATTAAA1- C228T G1397A G9479T A9514G G11083T C26549T G26720C T28688C T28835C G29742T

EPI_ISL_437321
 2020-03-19 2020-05-08
 Turkey hCoV-19/Turkey/HSGM-1497/2020
 ATTAAA1- C228T G1397A G9479T A9514G G11083T C26549T G26720C C27573T T28688C T28835C G29742T AAAAAAA29897-

EPI_ISL_437322
 2020-03-19 2020-05-08
 Turkey hCoV-19/Turkey/HSGM-1009/2020
 ATTAAA1- C241T C884T G1397A G8653T C10702T G11083T A22964G C26549T T26551C T28688C G29742T AAAAA29899-

EPI_ISL_437323
 2020-03-19 2020-05-08
 Turkey hCoV-19/Turkey/HSGM-1481/2020
 ATTAAA1- C241T C884T G1397A G8653T C10702T G11083T A22964G C26549T T28688C G29742T AAAAAAAAAAA29893-

EPI_ISL_437324
 2020-03-19 2020-05-08
 Turkey hCoV-19/Turkey/HSGM-1476/2020
 ATTAAA1- C228Y C884T G1397A G8653T C10702T G11083T A22964G C26549T T26551C T28688C G29742T AAA29901-

EPI_ISL_437325
 2020-03-19 2020-05-08
 Turkey hCoV-19/Turkey/HSGM-1495/2020
 ATTAAA1- C241T G1397A C5736T G9479T A9514G G11083T C21789T G26720C T28688C T28835C G29742T AAAAAAAAA29895-

EPI_ISL_437326
 2020-03-19 2020-05-08
 Turkey hCoV-19/Turkey/HSGM-1432/2020
 ATTAAA1- C241T C3037T C5736T C14408T C18877T C22444T A23403G G25563T C26256T C28854T AAAAAAAA29896-

EPI_ISL_437327
 2020-03-19 2020-05-08
 Turkey hCoV-19/Turkey/HSGM-1458/2020
 ATTAAA1- C241T G1397A G9479T A9514G G11083T G26720C T28688C T28835C G29742T AAAAA29899-

EPI_ISL_437328
 2020-03-19 2020-05-08
 Turkey hCoV-19/Turkey/HSGM-7668/2020
 ATTAAA1- C241T C1825T C2113T C3037T C5736Y C7765T C14408T C17690T C18877T A23403G G25563T AAAAAAAAAAAAAAAAA29887-

EPI_ISL_437329
 2020-03-19 2020-05-08
 Turkey hCoV-19/Turkey/HSGM-6204/2020
 ATTAAA1- C228T C5736T G9479T A9514G C13476T C18877T G26720C AAAAAAAAAAAAAA29890-

EPI_ISL_437330
 2020-03-19 2020-05-08
 Turkey hCoV-19/Turkey/HSGM-1452/2020
 ATTAAA1- C241T C3037T C5826A C14408T C18877T A23403G G25563T C26549T AAAAAAAAAAAAAAAAA29887-

EPI_ISL_437554
 2020-03-19 2020-05-11
 United States hCoV-19/USA/CA-SR0258/2020
 C241T C1059T C1887T C3037T C14408T A23403G G25563T C26873T

EPI_ISL_437600
 2020-03-19 2020-05-11
 United States hCoV-19/USA/CA-SR0177/2020
 C241T C3037T C8389T C14408T A23403G G25563T C29870A

EPI_ISL_437603 MT447175
 2020-03-19 2020-05-01
 Thailand SARS-CoV-2/human/THA/SI206587-NT/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- A895G C2942T G4390T C8782T C9598T G20134T G24047A G27877T T28144C ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_437892 MT459894
 2020-03-19 2020-05-11
 Greece SARS-CoV-2/human/GRC/226_35576/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- A2480G C2558T G11083T C14267T C14805T A16095G G26144T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_437916
 2020-03-19 2020-05-12
 Austria hCoV-19/Austria/CeMM0026/2020
 C241T C1059T C3037T C14408T A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_437963
 2020-03-19 2020-05-12
 Austria hCoV-19/Austria/CeMM0102/2020
 C241T C3037T C4068T C14408T T22521K A23403G C27046T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_437964
 2020-03-19 2020-05-12
 Austria hCoV-19/Austria/CeMM0103/2020
 C241T C3037T C3373A G11516A C14408T T22521K A23403G G25269T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_437965
 2020-03-19 2020-05-12
 Austria hCoV-19/Austria/CeMM0104/2020
 C241T C1059T C3037T C14408T C15026T T22521K A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_438066
 2020-03-19 2020-05-12
 Austria hCoV-19/Austria/CeMM0235/2020
 C241T C1387T C3037T C14408T T22521K A23403G C27046T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_438068
 2020-03-19 2020-05-12
 Austria hCoV-19/Austria/CeMM0238/2020
 C241T C3037T G11464A G13982T C14408T T22521K A23403G C27046T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_438069
 2020-03-19 2020-05-12
 Austria hCoV-19/Austria/CeMM0239/2020
 C241T G2809T C3037T G12832A C14408T C21846T T22521K A23403G GGG28881AAC A29865R AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_438120
 2020-03-19 2020-05-12
 Austria hCoV-19/Austria/CeMM0357/2020
 C241T C3037T C14408T T22521K A23403G C24621T C27046T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_438889
 2020-03-19 2020-05-12
 United Kingdom hCoV-19/Scotland/CVR234/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G13835T C14408T A20268G A23403G G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_438913
 2020-03-19 2020-05-12
 United Kingdom hCoV-19/Scotland/CVR247/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_441415
 2020-03-19 2020-05-12
 United Kingdom hCoV-19/Northern Ireland/NIRE-FB396/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- ATG1605- A1815R C6696T C11001T T22729C C29870A

EPI_ISL_443216
 2020-03-19 2020-05-12
 Singapore hCoV-19/Singapore/124/2020
 C6310A C6312A G11083T C13730T C19524T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_443295
 2020-03-19 2020-05-12
 France hCoV-19/France/IDF5847/2020
 C241T C1059T C3037T C6031T G11083T C14408T A23403G G25563T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_443296
 2020-03-19 2020-05-12
 France hCoV-19/France/IDF5848/2020
 C241T C1059T C3037T C8733T T13006C C14408T A23403G G25563T C25688T AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_444571
 2020-03-19 2020-05-14
 United States hCoV-19/USA/IL-NM079/2020
 C241T C3037T G3871T C14408T A23403G

EPI_ISL_444573
 2020-03-19 2020-05-14
 United States hCoV-19/USA/IL-NM082/2020
 C66T T490A C3177T C8782T T18736C G19684T T21698G C24034T T26729C C27635T G28077C T28144C A29700G

EPI_ISL_444574
 2020-03-19 2020-05-14
 United States hCoV-19/USA/IL-NM083/2020
 C241T C3037T G3871T C14408T C19862T A23403G

EPI_ISL_444575
 2020-03-19 2020-05-14
 United States hCoV-19/USA/IL-NM084/2020
 A2817C G5017A C26902A

EPI_ISL_444576
 2020-03-19 2020-05-14
 United States hCoV-19/USA/IL-NM085/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_444577
 2020-03-19 2020-05-14
 United States hCoV-19/USA/IL-NM087/2020
 T490A C3177T C8782T T18736C G19684T T21698G C24034T T26729C C27635T G28077C T28144C A29700G

EPI_ISL_444578
 2020-03-19 2020-05-14
 United States hCoV-19/USA/IL-NM088/2020
 C241T C1059T C1427T C3037T C5183T C14408T A23403G G25563T

EPI_ISL_444579
 2020-03-19 2020-05-14
 United States hCoV-19/USA/IL-NM089/2020
 C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T

EPI_ISL_444580
 2020-03-19 2020-05-14
 United States hCoV-19/USA/IL-NM090/2020
 C241T C3037T C11704T C14408T A20268G A23403G

EPI_ISL_444583
 2020-03-19 2020-05-14
 United States hCoV-19/USA/IL-NM095/2020
 C1059T C3037T C3177T C8782T C14408T C24034T G25563T C27635T T28144C A29567C

EPI_ISL_444599
 2020-03-19 2020-05-14
 United States hCoV-19/USA/IL-NM0116/2020
 C241T C3037T C14408T T15354C C18877T A23403G G25563T

EPI_ISL_444888
 2020-03-19 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-751/2020
 C241T C1059T G1729A C3037T C11674T C14408T G15327A A23403G G25563T C29200T

EPI_ISL_444896
 2020-03-19 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-769/2020
 C241T C3037T C7834T C14408T A23403G

EPI_ISL_444900
 2020-03-19 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-775/2020
 C241T C1059T C3037T G3685T T8788C C14408T G21624T A23403G G25563T G26951A C29272T

EPI_ISL_444901
 2020-03-19 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-779/2020
 C241T C3037T C7834T C14408T A23403G

EPI_ISL_444902
 2020-03-19 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-780/2020
 C241T C1059T C3037T C3923T C12781T C14408T C15842A A23403G G25563T

EPI_ISL_445282
 2020-03-19 2020-05-15
 Chile hCoV-19/Chile/Punta_Arenas_4/2020
 A1T C241T C3037T C14408T C15324T A23403G GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_445283
 2020-03-19 2020-05-15
 Chile hCoV-19/Chile/Punta_Arenas_5/2020
 A1T T3A A5T C241T C1059T C3037T C14408T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_445284
 2020-03-19 2020-05-15
 Chile hCoV-19/Chile/Punta_Arenas_6/2020
 ATTAAA1- C241T C1059T C3037T C14408T A23403G G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_445286
 2020-03-19 2020-05-15
 Chile hCoV-19/Chile/Valparaiso_3/2020
 A1- T3A A5T C241T C1059T C3037T T10339C C14408T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_445287
 2020-03-19 2020-05-15
 Chile hCoV-19/Chile/Valparaiso_4/2020
 A1T T3A A5T C241T C3037T C14408T A23403G A29683- -TGTG29839CAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA TTTT29845AAAA T29851A GCTTCTT29853AAAAAAA GG29861AA G29864A TG29867AA C29870A

EPI_ISL_445315
 2020-03-19 2020-05-15
 Chile hCoV-19/Chile/Santiago_36/2020
 ATTAAA1- C241T C3037T G10265A A12506R C14408T A23403G GGG28881AAC ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_445318
 2020-03-19 2020-05-15
 Chile hCoV-19/Chile/Santiago_39/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGA1- G11083T A12506R C14805T T17247C G26144T CA29838TG GTG29841- A29844C T29846C ATAG29850TACA T29855A T29859G G29861C AGAAT29863CTGCC A29871G AA29873CT AAAA29876GTCG AAAA29881GTGT A29886G AAAAAAAAAAAAAAAA29888TCTCGGTGG

EPI_ISL_445324
 2020-03-19 2020-05-15
 Chile hCoV-19/Chile/Santiago_45/2020
 -A3TCAAGGAGGAGTTAGATAAATATTTTAAGAATCATACATCACCAGATGTTGATTTAGGG C241T C3037T C14408T A20268G A23403G A29839C GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_447072 MT506541
 2020-03-19 2020-05-16
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20274/2020
 C241T C1059T C3037T C14177T C14408T A23403G G25563T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_447173 MT506680
 2020-03-19 2020-05-16
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20202/2020
 T490A G922A C3177T C8782T T18736C C19118Y A22003G C24034T T26729C G28077C T28144C A29700G

EPI_ISL_447178 MT506660
 2020-03-19 2020-05-16
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20207/2020
 C241T C1059T C3037T C14408T A23403G G25563T C25976A

EPI_ISL_447179 MT506659
 2020-03-19 2020-05-16
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20208/2020
 A97G C241T C1059T C3037T A5011M C14408T A23403G G25563T A29903-

EPI_ISL_447221 MT506654
 2020-03-19 2020-05-16
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20251/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27005T

EPI_ISL_447323
 2020-03-19 2020-05-17
 Israel hCoV-19/Israel/51140539/2020
 C241T C3037T C7834T C14408T A23403G GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_447615
 2020-03-19 2020-05-18
 Taiwan hCoV-19/Taiwan/NTU18/2020
 C8782T A12787G C17747T A17858G C18060T A24694T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_450055
 2020-03-19 2020-05-19
 United States hCoV-19/USA/NY-PV09370/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C1170T C3037T C14408T A23403G G25563T G27478A GTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29759-

EPI_ISL_450056
 2020-03-19 2020-05-19
 United States hCoV-19/USA/NY-PV09371/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T C1059T C3037T C14408T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450058
 2020-03-19 2020-05-19
 United States hCoV-19/USA/NY-PV09374/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C1594T C3037T C14408T A23403G G25563T GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_450059
 2020-03-19 2020-05-19
 United States hCoV-19/USA/NY-PV09375/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- G11083T C14805T T17247C G26144T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450060
 2020-03-19 2020-05-19
 United States hCoV-19/USA/NY-PV09377/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T C1059T C3037T C11916T C14408T A23403G G25563T TAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29775-

EPI_ISL_450061
 2020-03-19 2020-05-19
 United States hCoV-19/USA/NY-PV09378/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T C1059T C1917T C3037T C14408T G20005A A23403G G25563T CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_450062
 2020-03-19 2020-05-19
 United States hCoV-19/USA/NY-PV09379/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C1059T C3037T C14408T A20755C A23403G G25563T GTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29759-

EPI_ISL_450063
 2020-03-19 2020-05-19
 United States hCoV-19/USA/NY-PV09380/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C1625T G11083T C14805T T17247C G26144T GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_450064
 2020-03-19 2020-05-19
 United States hCoV-19/USA/NY-PV09381/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C1059T C3037T C14408T A23403G C23453T G25563T GTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29759-

EPI_ISL_450065
 2020-03-19 2020-05-19
 United States hCoV-19/USA/NY-PV09382/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_450066
 2020-03-19 2020-05-19
 United States hCoV-19/USA/NY-PV09383/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCT1- C241T C1059T C3037T C14408T A23403G G25563T C28674T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450067
 2020-03-19 2020-05-19
 United States hCoV-19/USA/NY-PV09384/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T C1059T C3037T C14408T C14676T A23403G G25563T GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_450068
 2020-03-19 2020-05-19
 United States hCoV-19/USA/NY-PV09385/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C1059T C3037T C14408T C21762T A23403G G25563T C29640T GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_450069
 2020-03-19 2020-05-19
 United States hCoV-19/USA/NY-PV09387/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C1059T C3037T C14408T A23403G G25563T GTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29759-

EPI_ISL_450070
 2020-03-19 2020-05-19
 United States hCoV-19/USA/NY-PV09388/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G G25563T C28836T GTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29759-

EPI_ISL_450072
 2020-03-19 2020-05-19
 United States hCoV-19/USA/NY-PV09391/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G G25563T AGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29763-

EPI_ISL_450074
 2020-03-19 2020-05-19
 United States hCoV-19/USA/NY-PV09393/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATC1- C241T C1059T C3037T A6324G C11916T G13993T C14408T C18998T A23403G G25563T G29540A AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450075
 2020-03-19 2020-05-19
 United States hCoV-19/USA/NY-PV09394/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T C1059T C3037T C8655T C14408T C16580T G18984T A23403G G25563T TGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29772-

EPI_ISL_450076
 2020-03-19 2020-05-19
 United States hCoV-19/USA/NY-PV09395/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C1059T C3037T C8655T C14408T C16580T G18984T A23403G G25563T AACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29767-

EPI_ISL_450077
 2020-03-19 2020-05-19
 United States hCoV-19/USA/NY-PV09396/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T C1059T C3037T C14408T A23403G G25563T GTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29759-

EPI_ISL_450079
 2020-03-19 2020-05-19
 United States hCoV-19/USA/NY-PV09398/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T G15760A A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450080
 2020-03-19 2020-05-19
 United States hCoV-19/USA/NY-PV09399/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T C1059T C3037T C14408T G15760A G21800A A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450081
 2020-03-19 2020-05-19
 United States hCoV-19/USA/NY-PV09400/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T A2018G C3037T C14408T T21995C A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450082
 2020-03-19 2020-05-19
 United States hCoV-19/USA/NY-PV09401/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450124
 2020-03-19 2020-05-20
 United States hCoV-19/USA/NY-PV09450/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450125
 2020-03-19 2020-05-20
 United States hCoV-19/USA/NY-PV09451/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTT1- C241T C3037T C14408T A23403G AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450126
 2020-03-19 2020-05-20
 United States hCoV-19/USA/NY-PV09452/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C2676T C8782T A22606T C25511T T28144C G28878A G29742A ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_450127
 2020-03-19 2020-05-20
 United States hCoV-19/USA/NY-PV09453/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G G25563T G29540A AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450128
 2020-03-19 2020-05-20
 United States hCoV-19/USA/NY-PV09454/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450129
 2020-03-19 2020-05-20
 United States hCoV-19/USA/NY-PV09455/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C3037T G4255T C14408T T16456G C20051T A23403G A26530G GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_450130
 2020-03-19 2020-05-20
 United States hCoV-19/USA/NY-PV09456/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450131
 2020-03-19 2020-05-20
 United States hCoV-19/USA/NY-PV09457/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C5512T C10851T C14408T A23403G G25563T ATTTGCTTTTGCTTGTCCTGACGGCGTAAAACACGTCTATCAGTTACGTGCCAGATCAGTTTCACCTAAACTGTTCATCAGACAAGAGGAAGTTCAAGAACTTTACTCTCCAATTT27579- AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450132
 2020-03-19 2020-05-20
 United States hCoV-19/USA/NY-PV09459/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C12488T C14408T A23403G G25563T A28482G C29421T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450133
 2020-03-19 2020-05-20
 United States hCoV-19/USA/NY-PV09460/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450134
 2020-03-19 2020-05-20
 United States hCoV-19/USA/NY-PV09461/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G G25563T C25688A AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_450135
 2020-03-19 2020-05-20
 United States hCoV-19/USA/NY-PV09462/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTG1- C3037T G11083T C11916T T17137A C18998T A23403G G25563T G29540A AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450136
 2020-03-19 2020-05-20
 United States hCoV-19/USA/NY-PV09463/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- G11083T C14805T T17247C G26144T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450137
 2020-03-19 2020-05-20
 United States hCoV-19/USA/NY-PV09464/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T C1059T C3037T C14408T C16376T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450138
 2020-03-19 2020-05-20
 United States hCoV-19/USA/NJ-PV09465/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450139
 2020-03-19 2020-05-20
 United States hCoV-19/USA/NY-PV09466/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCT1- T490A C3177T C8782T T18736C G19684T C24034T C26642A T26729C G26840T C27635T G28077C T28144C A29700G AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450140
 2020-03-19 2020-05-20
 United States hCoV-19/USA/NY-PV09467/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T G2281A C3037T C14408T A23403G G25563T GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_450141
 2020-03-19 2020-05-20
 United States hCoV-19/USA/NY-PV09468/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T A2018G C3037T C14408T T21995C A23403G G25563T GAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29781-

EPI_ISL_450142
 2020-03-19 2020-05-20
 United States hCoV-19/USA/NY-PV09470/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450143
 2020-03-19 2020-05-20
 United States hCoV-19/USA/NY-PV09471/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T G15760A A23403G G25563T C29409T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450144
 2020-03-19 2020-05-20
 United States hCoV-19/USA/NY-PV09472/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C8782T C17747T A17858G C18060T T28144C C28708T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_450145
 2020-03-19 2020-05-20
 United States hCoV-19/USA/NJ-PV09473/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450194
 2020-03-19 2020-05-20
 Australia hCoV-19/Australia/SAP036/2020
 ATTA1- C241T C1059T C3037T C14408T A23403G G25563T G25879T

EPI_ISL_450236
 2020-03-19 2020-05-20
 United States hCoV-19/USA/CA-UCSF-UC44/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C1059T C3037T C14408T A23403G G25563T C29614T TGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29840-

EPI_ISL_450237
 2020-03-19 2020-05-20
 United States hCoV-19/USA/CA-UCSF-UC45/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C11674T C14408T A23403G C27046T GGG28881AAC TACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29760-

EPI_ISL_450413
 2020-03-19 2020-05-04
 Germany hCoV-19/Germany/HH-1/2020
 G160A C241T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_450471 MT499197
 2020-03-19 2020-05-21
 United States SARS-CoV-2/human/USA/CA-CZB-1222/2020
 ATTAAAGGTTTA1- C16887T C17634A AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_450472 MT499198
 2020-03-19 2020-05-21
 United States SARS-CoV-2/human/USA/CA-CZB-1223/2020
 A1- G1467A A13419T C26032T C27131T G29711T

EPI_ISL_450475 MT499201
 2020-03-19 2020-05-21
 United States SARS-CoV-2/human/USA/CA-CZB-1226/2020
 G29711T

EPI_ISL_450835
 2020-03-19 2020-05-22
 Sweden hCoV-19/Sweden/20-08352/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T

EPI_ISL_452026
 2020-03-19 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-150/2020
 C241T C683T C1059T C3037T C12781T C14408T C15842A G22103C A23403G G25563T C27741T

EPI_ISL_452027
 2020-03-19 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-151/2020
 C241T C1059T C1302T C3037T C14408T A23403G G25563T

EPI_ISL_452028
 2020-03-19 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-153/2020
 C241T C1059T C3037T T8788C C14408T A23403G G25563T G26951A

EPI_ISL_452029
 2020-03-19 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-154/2020
 C241T C1059T C3037T C14408T G19086T A23403G G25563T

EPI_ISL_452030
 2020-03-19 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-155/2020
 T99C C241T C1059T C3037T C14408T A23403G G25563T C29719T

EPI_ISL_452031
 2020-03-19 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-156/2020
 C241T C3037T C14408T A23403G

EPI_ISL_452032
 2020-03-19 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-157/2020
 C241T C1059T C3037T C6539T C14408T A23403G G25563T

EPI_ISL_452033
 2020-03-19 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-158/2020
 C241T C3037T C14408T C18744T A20268G A23403G

EPI_ISL_452102
 2020-03-19 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-SSI-766/2020
 C241T C1059T C3037T C14408T A23403G G25563T C29200T

EPI_ISL_452305
 2020-03-19 2020-05-27
 United States hCoV-19/USA/MI-MDHHS-SC20431/2020
 C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_452325
 2020-03-19 2020-05-27
 United States hCoV-19/USA/MI-MDHHS-SC20451/2020
 T490A G922A C3177T C8782T T18736C A22003G C24034T T26729C G28077C T28144C A29700G

EPI_ISL_452326
 2020-03-19 2020-05-27
 United States hCoV-19/USA/MI-MDHHS-SC20452/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_452334
 2020-03-19 2020-05-27
 China hCoV-19/Beijing/DT-travelIT05/2020
 C241T C4886T T4932C A26170T C27094T GGG28881AAC

EPI_ISL_452338
 2020-03-19 2020-05-27
 China hCoV-19/Beijing/DT-travelUSA02/2020
 C241T C1059T C3037T T8022G C12400T C14408T C19975T A23403G G25563T

EPI_ISL_452340
 2020-03-19 2020-05-27
 China hCoV-19/Beijing/DT-travelUSA03/2020
 C241T C3037T G12769T A23403G C28253T G28262T

EPI_ISL_452346
 2020-03-19 2020-05-27
 China hCoV-19/Beijing/DT-travelES04/2020
 C241T C3037T T8022G C14408T A20268G A23403G AG24389CC G29473A G29734C

EPI_ISL_452349
 2020-03-19 2020-05-27
 China hCoV-19/Beijing/DT-travelHU01/2020
 C241T G2229A C3037T T8022G C14408T A23403G AG24389CC A24950T GGG28881AAC

EPI_ISL_454066
 2020-03-19 2020-05-28
 Portugal hCoV-19/Portugal/PT0350/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3140T C14408T A23403G G24077T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454072
 2020-03-19 2020-05-28
 Portugal hCoV-19/Portugal/PT0356/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C1059T C3037T A7025G T13006C C14408T G17302T A23403G G25563T C25688T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454074
 2020-03-19 2020-05-28
 Portugal hCoV-19/Portugal/PT0358/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C2416T C3037T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454076
 2020-03-19 2020-05-28
 Portugal hCoV-19/Portugal/PT0360/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC A29396G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454077
 2020-03-19 2020-05-28
 Portugal hCoV-19/Portugal/PT0361/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3140T C13059T C14408T A23403G G24077T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454078
 2020-03-19 2020-05-28
 Portugal hCoV-19/Portugal/PT0362/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C10798T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454080
 2020-03-19 2020-05-28
 Portugal hCoV-19/Portugal/PT0364/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- C241T C3037T C14408T A23403G GGG28881AAC CGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29754-

EPI_ISL_454081
 2020-03-19 2020-05-28
 Portugal hCoV-19/Portugal/PT0365/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- C241T C3037T C3140T C14408T A23403G G24077T C29555T CGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29754-

EPI_ISL_454082
 2020-03-19 2020-05-28
 Portugal hCoV-19/Portugal/PT0366/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T G9805T C14408T A23403G G25552T GGG28881AAC TGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29689-

EPI_ISL_454083
 2020-03-19 2020-05-28
 Portugal hCoV-19/Portugal/PT0367/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T G4162T C14408T A23403G A26530G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454087
 2020-03-19 2020-05-28
 Portugal hCoV-19/Portugal/PT0371/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- C241T C3037T C14408T A19630C A20268G A23403G C25083T CGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29754-

EPI_ISL_454091
 2020-03-19 2020-05-28
 Portugal hCoV-19/Portugal/PT0375/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- C241T T2482C C3037T T11205G C14408T A20268G A23403G G29734C CGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29754-

EPI_ISL_454230
 2020-03-19 2020-05-28
 Portugal hCoV-19/Portugal/PT0506/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454233
 2020-03-19 2020-05-28
 Portugal hCoV-19/Portugal/PT0509/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454234
 2020-03-19 2020-05-28
 Portugal hCoV-19/Portugal/PT0510/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454235
 2020-03-19 2020-05-28
 Portugal hCoV-19/Portugal/PT0511/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- A2480G C2558T G11083T C14805T A19459G G26144T A29684G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454318
 2020-03-19 2020-05-28
 Portugal hCoV-19/Portugal/PT0595/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- G11083T C14805T G26144T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454607 MT533204
 2020-03-19 2020-05-28
 United States SARS-CoV-2/human/USA/CA-CZB-1270/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- A2480G C2558T T6746C A9048G G11083T C14805T G26144T G28857R C29686T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_454608 MT533205
 2020-03-19 2020-05-28
 United States SARS-CoV-2/human/USA/CA-CZB-1271/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T C3037T C11224T C14408T A23403G G25563T TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_454957
 2020-03-19 2020-05-29
 China hCoV-19/Wuhan/HB-WH4-208/2020
 A28356G C28441A

EPI_ISL_454958
 2020-03-19 2020-05-29
 China hCoV-19/Wuhan/HB-WH4-209/2020
 T25382C A28356G

EPI_ISL_454959
 2020-03-19 2020-05-29
 China hCoV-19/Wuhan/HB-WH4-210/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- G800T

EPI_ISL_454961
 2020-03-19 2020-05-29
 China hCoV-19/Wuhan/HB-WH4-212/2020
 T240C G2458T G26144T

EPI_ISL_454966
 2020-03-19 2020-05-29
 China hCoV-19/Wuhan/HB-WH5-221/2020
 CCGATACAAGCCTCACTCCCTTTCGGATGGCTTATTGTTGGCGTTGCACTTCTTGCTGTTTT25498- C26571T G26865-

EPI_ISL_455210
 2020-03-19 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_408/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4586T G12550A C14408T A20268G C20740A A23403G G29734C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455390
 2020-03-19 2020-05-29
 China hCoV-19/Wuhan/HB-WH5-218/2020
 G15538A A16445- A17423G

EPI_ISL_455602
 2020-03-19 2020-06-01
 Australia hCoV-19/Australia/VPRL010/2020
 C1943T A5410G C6312A G11083T C13730T G19891T C23929T C28311T C29085T

EPI_ISL_455698
 2020-03-19 2020-06-01
 Vietnam hCoV-19/Vietnam/VNHN_1226/2020
 C241T C3037T C14408T G21724T A23403G GGG28881AAC

EPI_ISL_456151
 2020-03-19 2020-06-02
 Colombia hCoV-19/Colombia/INS-82320/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_456171
 2020-03-19 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR0933/2020
 C241T C3037T C14408T A23403G

EPI_ISL_456181
 2020-03-19 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1004/2020
 C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_456191
 2020-03-19 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1110/2020
 C241T C3037T G9584T C14408T A23403G C28214A T28216A

EPI_ISL_456210
 2020-03-19 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1286/2020
 C241T C3037T C6723T C14408T A23403G T26094C

EPI_ISL_457598
 2020-03-19 2020-06-02
 United Kingdom hCoV-19/England/SHEF-C33D3/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_457795 MT646068
 2020-03-19 2020-06-02
 United States SARS-CoV-2/human/USA/MD-HP00051/2020
 C241T C1059T C3037T C14408T A15325G A23403G G25563T

EPI_ISL_457800 MT646072
 2020-03-19 2020-06-02
 United States SARS-CoV-2/human/USA/MD-HP00058/2020
 C8782T C17747T A17858G C18060T A24694T T28144C

EPI_ISL_457813 MT646083
 2020-03-19 2020-06-02
 United States SARS-CoV-2/human/USA/MD-HP00120/2020
 T490A C3177T C6040T C8782T C8950T G12478A G18318T T18736C C24034T C24382G T26729C G28077C T28144C C28896G C29451T A29700G

EPI_ISL_458229
 2020-03-19 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0319259/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A11839G C14408T T19839C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458235
 2020-03-19 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0319265/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_460182 MT520257
 2020-03-19 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00542/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C2416T C3037T C14408T A23403G G25563T G26233T G28975T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_460275 MT520350
 2020-03-19 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00538/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T C2416T C3037T C14408T A23403G G25563T G26233T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460460 MT520535
 2020-03-19 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00537/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C2416T C3037T C12789T C14408T A23403G G25563T G26233T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_460656
 2020-03-19 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_20/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C900T C1594T C3037T C11109T C14408T G17019T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460696
 2020-03-19 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_523/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G20275A A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460716
 2020-03-19 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_543/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_462277
 2020-03-19 2020-06-08
 Singapore hCoV-19/Singapore/159/2020
 C1376Y AAAAAAAAAAAA29892-

EPI_ISL_462278
 2020-03-19 2020-06-08
 Singapore hCoV-19/Singapore/160/2020
 A2480G C2558T A5939R G6373R G11083T C14805T G15025K A23526G G26144K G29711K C29784Y CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_462279
 2020-03-19 2020-06-08
 Singapore hCoV-19/Singapore/161/2020
 A2480G C2558T G11083T C14805T A23526G G26144T C29784T AAAAAAAAAAAA29892-

EPI_ISL_462280
 2020-03-19 2020-06-08
 Singapore hCoV-19/Singapore/162/2020
 C228T G1397A G9479T A9514G G11083K G26720C T28688C T28835C G29742T AAAAAAAAAAAAAA29890-

EPI_ISL_462281
 2020-03-19 2020-06-08
 Singapore hCoV-19/Singapore/163/2020
 C6310A C6312A G11083T C13072Y C13730T C19524T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_462282
 2020-03-19 2020-06-08
 Singapore hCoV-19/Singapore/164/2020
 C241T C3037T C6573T C14408T A23403G C25528T GGG28881AAC AAAAAAAAAAAAAAAAAAAA29884-

EPI_ISL_462285
 2020-03-19 2020-06-08
 Singapore hCoV-19/Singapore/167/2020
 C14636T AAAAAAAAAAAA29892-

EPI_ISL_462290
 2020-03-19 2020-06-08
 Singapore hCoV-19/Singapore/172/2020
 C241T C3037T C14408T A20268G A21532W A23403G AAAAAAAAAAAA29892-

EPI_ISL_462291
 2020-03-19 2020-06-08
 Singapore hCoV-19/Singapore/173/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAA29892-

EPI_ISL_462451
 2020-03-19 2020-06-08
 Bosnia and Herzegovina hCoV-19/Bosnia and Herzegovina/ChVir7343/2020
 ATTAAAGGTTTAT1- C241T C3037T C14408T C15324T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_462452
 2020-03-19 2020-06-08
 Bosnia and Herzegovina hCoV-19/Bosnia and Herzegovina/ChVir7344/2020
 ATTAAAGGTTTAT1- C241T C3037T C10336T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_463991
 2020-03-19 2020-06-11
 Canada hCoV-19/Canada/ON_MU-S63/2020
 ATTAAAGGTTTATACCT1- C241T C2416T C2919T C3037T C14408T A23403G G25563T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_463994
 2020-03-19 2020-06-11
 Canada hCoV-19/Canada/ON_MU-S82/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C3037T C14408T A23403G G25217T G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_464167 MT594109
 2020-03-19 2020-06-11
 United States SARS-CoV-2/human/USA/VI-CDC-3638/2020
 T490A C3177T C6040T C8782T G12478A T18736C C24034T T26729C G28077C T28144C C28896G A29700G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_467093
 2020-03-19 2020-06-12
 Spain hCoV-19/Spain/COV001514/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T

EPI_ISL_467096
 2020-03-19 2020-06-12
 Spain hCoV-19/Spain/COV001431/2020
 C8782T T9477A C14805T G25954T G25979T T28144C C28657T C28863T C29870A

EPI_ISL_467146
 2020-03-19 2020-06-12
 Spain hCoV-19/Spain/COV001459/2020
 C6099T C8782T T9477A C14805T C22227T G25979T T28144C C28657T C28863T

EPI_ISL_467150
 2020-03-19 2020-06-12
 Spain hCoV-19/Spain/COV001499/2020
 A5053G A8148G C8782T T9477A C14805T G25979T T28144C C28657T C28863T

EPI_ISL_467157
 2020-03-19 2020-06-12
 Spain hCoV-19/Spain/COV001498/2020
 C241T C3037T G3875R C14408T G15438T A20268G A23403G G25049T

EPI_ISL_467162
 2020-03-19 2020-06-12
 Spain hCoV-19/Spain/COV001485/2020
 C4012T C8782T T9477A C14805T G25979T T28144C C28657T C28863T

EPI_ISL_467177
 2020-03-19 2020-06-12
 Spain hCoV-19/Spain/COV001440/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T

EPI_ISL_467961
 2020-03-19 2020-06-16
 United States hCoV-19/USA/CA-SR0431/2020
 C241T C1059T C3037T C14408T C16762T A23403G G25563T C26885T

EPI_ISL_468391 MT628127
 2020-03-19 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1417/2020
 T10Y C241T C1059T C3037T A6398C C14408T A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_468975
 2020-03-19 2020-06-17
 Spain hCoV-19/Spain/Palma2542/2020
 C241T C3037T C7765T C9051A C14408T A20268G A21659T A23403G

EPI_ISL_469018
 2020-03-19 2020-06-17
 Italy hCoV-19/Italy/IZSPB_802/2020
 A1CCCGGA C241T C3037T C3487T C14408T G16935T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_469020
 2020-03-19 2020-06-17
 Italy hCoV-19/Italy/IZSPB_809/2020
 A1CCGAGGGA C241T C3037T C14408T T15978C A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_470853
 2020-03-19 2020-06-19
 Australia hCoV-19/Australia/WA36/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- A1515G C9223T G11083T C14805T T17247C T17859C G26144T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_471178
 2020-03-19 2020-06-19
 United States hCoV-19/USA/WI-WSLH-200012/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25302T G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471220
 2020-03-19 2020-06-19
 United States hCoV-19/USA/WI-WSLH-200055/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471539
 2020-03-19 2020-06-22
 Brazil hCoV-19/Brazil/SP-47/2020
 T25A C241T C3037T C14408T C21597T A23403G G25088T GGG28881AAC G29861A GA29864AC AAAAAAAAAAAAA29891-

EPI_ISL_474851
 2020-03-19 2020-06-23
 Spain hCoV-19/Spain/Churriana_de_la_Vega-COV002912/2020
 C241T C3037T C10369T C14408T A20268G A23403G

EPI_ISL_474870
 2020-03-19 2020-06-23
 Spain hCoV-19/Spain/Granada-COV002915/2020
 C8782T C26088T T28144C A28973T

EPI_ISL_474939
 2020-03-19 2020-06-23
 Spain hCoV-19/Spain/Pulianas-COV002918/2020
 C241T G2273R C3037T C14408T A20268G A23403G

EPI_ISL_475096
 2020-03-19 2020-06-23
 Sweden hCoV-19/Sweden/20-08317/2020
 C241T C3037T C14408T A23403G C25587T C27046T C28344A GGG28881AAC

EPI_ISL_475321
 2020-03-19 2020-06-23
 United Kingdom hCoV-19/England/PORT-2D1060/2020
 C1457T A2480G C2558T G11083T C14805T G26144T

EPI_ISL_475322
 2020-03-19 2020-06-23
 United Kingdom hCoV-19/England/PORT-2D109D/2020
 G1440A G2891A A7981G C10507T C13019T

EPI_ISL_475323
 2020-03-19 2020-06-23
 United Kingdom hCoV-19/England/PORT-2D10AC/2020
 C1457T A2480G C2558T G11083T C11563T C14805T C18568T G26144T

EPI_ISL_475325
 2020-03-19 2020-06-23
 United Kingdom hCoV-19/England/PORT-2D10D9/2020
 A7479G G11083T C14805T T17247C C25572T G26144T

EPI_ISL_475466
 2020-03-19 2020-06-23
 United Kingdom hCoV-19/England/SHEF-CE7FA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13730T C14408T A23403G G25429T A29491T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475815
 2020-03-19 2020-06-25
 Austria hCoV-19/Austria/CeMM0368/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A28870R CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475829
 2020-03-19 2020-06-25
 Austria hCoV-19/Austria/CeMM0388/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C C884A G1880A C17410T G25654A C27881T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475832
 2020-03-19 2020-06-25
 Austria hCoV-19/Austria/CeMM0392/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C106T C241T C3037T C14408T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475839
 2020-03-19 2020-06-25
 Austria hCoV-19/Austria/CeMM0404/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3466C C6781T C13862T C14408T C15352T A23403G C28836T G29229A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475917
 2020-03-19 2020-06-25
 Austria hCoV-19/Austria/CeMM0567/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11412T T13258C C14408T C15824Y G22225K A23403G C23758T C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475918
 2020-03-19 2020-06-25
 Austria hCoV-19/Austria/CeMM0568/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11412T T13258C C14408T A14413W G16707K G22225T A23403G C23758T T27017Y C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475922
 2020-03-19 2020-06-25
 Austria hCoV-19/Austria/CeMM0575/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11345T C11412T T13258C C14408T A23403G G25526T C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476774
 2020-03-19 2020-06-25
 United States hCoV-19/USA/CA-CZB-1757/2020
 ATTAAAGGTTTAT1- G27670T

EPI_ISL_476775
 2020-03-19 2020-06-25
 United States hCoV-19/USA/CA-CZB-1758/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_476804
 2020-03-19 2020-06-26
 China hCoV-19/Hong Kong/VM20004178/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C9857T G11083T C14408T A23403G CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_476829
 2020-03-19 2020-06-26
 Benin hCoV-19/Benin/843/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- TGG89KSK T4463Y C8782Y C25688Y C26873T T28144C G28878A G29742A TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_477203
 2020-03-19 2020-06-29
 Italy hCoV-19/Italy/IZSPB_694/2020
 ATTAAA1- C241T C3037T C14408T C19269T TTA21991- A23403G GGG28881AAC AATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29849-

EPI_ISL_477292
 2020-03-19 2020-06-29
 United States hCoV-19/USA/MN-MDH-1203/2020
 ATTA1- C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_477615
 2020-03-19 2020-06-29
 Hungary hCoV-19/Hungary/US-1791lc/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T T18495C A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477683
 2020-03-19 2020-06-29
 United States hCoV-19/USA/UNKNOWN-UW-1671/2020
 AT1GA A4T C36H C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_477689
 2020-03-19 2020-06-29
 United States hCoV-19/USA/WA-UW-1613/2020
 AT1GW A4T C36T C241T C1059T C3037T C14408T A23403G G25563T G29553A TG29867AA C29870A

EPI_ISL_477694
 2020-03-19 2020-06-29
 United States hCoV-19/USA/WA-UW-1632/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C36T C8782T C17747T A17858G C18060T T28144C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_478543
 2020-03-19 2020-06-30
 United Kingdom hCoV-19/England/NORT-284372/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A G11083T T13216G C14408T A19960G A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478544
 2020-03-19 2020-06-30
 United Kingdom hCoV-19/England/NORT-284381/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479885
 2020-03-19 2020-07-01
 Japan hCoV-19/Japan/PG-0176/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C925T C1059T C3037T C5310T C14408T A23403G G25563T TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_479901
 2020-03-19 2020-07-01
 Japan hCoV-19/Japan/PG-0196/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACT1- C241T C3037T C14408T C18877T A23403G G25563T C26735T TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_479909
 2020-03-19 2020-07-01
 Japan hCoV-19/Japan/PG-0209/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C8782T G16381A T17877C T28144C G28878A G29742A ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_479910
 2020-03-19 2020-07-01
 Japan hCoV-19/Japan/PG-0210/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C8782T G16381A T17877C T28144C G28878A G29742A TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_479959
 2020-03-19 2020-07-01
 Japan hCoV-19/Japan/PG-0279/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T4402C G5062T C8782T C16466T C25585T T28144C G29742T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479960
 2020-03-19 2020-07-01
 Japan hCoV-19/Japan/PG-0280/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- T4402C G5062T C8782T T28144C G29742T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_479961
 2020-03-19 2020-07-01
 Japan hCoV-19/Japan/PG-0281/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C313T C3037T C14408T A23403G GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_480106
 2020-03-19 2020-07-01
 Japan hCoV-19/Japan/PG-0441/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T C18167A C19102T A23403G G25563T C29247T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480107
 2020-03-19 2020-07-01
 Japan hCoV-19/Japan/PG-0442/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACT1- C241T C1059T C3037T C14408T C18167A C19102T A23403G G25563T C29247T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480109
 2020-03-19 2020-07-01
 Japan hCoV-19/Japan/PG-0445/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G3179A C6982T C8782T T28144C GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_480110
 2020-03-19 2020-07-01
 Japan hCoV-19/Japan/PG-0446/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- G2534T G3179A C6982T C8782T G25996T T28144C G28209T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_480117
 2020-03-19 2020-07-01
 Japan hCoV-19/Japan/PG-0455/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- G3179A C6982T C8782T T28144C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_480386 MT772553
 2020-03-19 2020-07-01
 United States SARS-CoV-2/human/USA/WI-UW-404/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C8016T C14408T T15366C A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480388 MT772555
 2020-03-19 2020-07-01
 United States SARS-CoV-2/human/USA/WI-UW-406/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A20755C A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480772 MT745740
 2020-03-19 2020-07-02
 Australia SARS-CoV-2/human/AUS/VIC2165/2020
 C241T A1163T C3037T T7540C C14408T G16647T C18555T C19217T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_481256
 2020-03-19 2020-07-03
 Germany hCoV-19/Germany/NW-RKI-N-0002/2020
 C241T C3037T C14408T A23403G C25688T GGG28881AAC

EPI_ISL_482324
 2020-03-19 2020-07-03
 United States hCoV-19/USA/OR-PROV-042/2020
 C8782T C17747T A17858G C18060T C21789T T28144C

EPI_ISL_482474
 2020-03-19 2020-07-03
 Canada hCoV-19/Canada/MB_58/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G15760A A23403G G25563T ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_482479
 2020-03-19 2020-07-03
 Canada hCoV-19/Canada/NL_72/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T G23726A C26088T C26527T T28144C ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_483002
 2020-03-19 2020-07-06
 United States hCoV-19/USA/MN-MDH-1281/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C6861T C14408T C19170T G19509A A23403G C24370T C27625A GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_483964
 2020-03-19 2020-07-08
 United Kingdom hCoV-19/England/GSTT-265D493/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G12662A C14408T C14786T G20578T G21624T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_483967
 2020-03-19 2020-07-08
 United Kingdom hCoV-19/England/GSTT-265D4C0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G2764T C6026T G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488520
 2020-03-19 2020-07-14
 United Kingdom hCoV-19/England/NORT-2843BE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G T25202K G27996T C28394A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488527
 2020-03-19 2020-07-14
 United Kingdom hCoV-19/England/NORT-2843DC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1912T C3037T C14408T A23403G T25202K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488554
 2020-03-19 2020-07-14
 United Kingdom hCoV-19/England/NORT-2843EB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G A8252R C9223T G11071C C11074T G11083T C14805T T17247C T25202K G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488572
 2020-03-19 2020-07-14
 United Kingdom hCoV-19/England/NORT-284390/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C2141Y G11083T C14805T G18880T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488673
 2020-03-19 2020-07-14
 United Kingdom hCoV-19/England/NORT-2843AF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A C10507T G27906T T29661C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488763
 2020-03-19 2020-07-14
 United Kingdom hCoV-19/England/NORT-281700/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A C10507T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488765
 2020-03-19 2020-07-14
 United Kingdom hCoV-19/England/NORT-2816E5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488789
 2020-03-19 2020-07-14
 United Kingdom hCoV-19/England/NORT-28171F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- A1904G C8090T C10789T G19999T C23557T A29115G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488821
 2020-03-19 2020-07-14
 United Kingdom hCoV-19/England/NORT-2817D3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488824
 2020-03-19 2020-07-14
 United Kingdom hCoV-19/England/NORT-284354/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1350T A2480G C2558T C7086T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488833
 2020-03-19 2020-07-14
 United Kingdom hCoV-19/England/NORT-2817F1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- TGGTCATGTTATG508- ATG1605- G4559R C5183T T8473C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489649
 2020-03-19 2020-07-14
 United Kingdom hCoV-19/Scotland/GCVR-16FB76/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491092
 2020-03-19 2020-07-16
 Czech Republic hCoV-19/Czech Republic/NRL_3971/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G14593A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491451
 2020-03-19 2020-07-17
 Costa Rica hCoV-19/Costa Rica/INC-0040/2020
 ATTAAAGGTTTATACCTTCCC1- C241T C1059T C3037T AC5114CA TT5117AC T5120A C14408T C16260T A23403G G25563T G27390T C28821A CCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29835-

EPI_ISL_492123
 2020-03-19 2020-07-20
 Australia hCoV-19/Australia/SAP183/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C14408T A23403G G25563T G25879T A27887G

EPI_ISL_492125
 2020-03-19 2020-07-20
 Australia hCoV-19/Australia/SAP186/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C1059T C3037T A8651C C14408T A23403G G25563T G25879T

EPI_ISL_492126
 2020-03-19 2020-07-20
 Australia hCoV-19/Australia/SAP187/2020
 ATTA1- C241T C1059T C3037T C14408T A23403G G25563T G25879T

EPI_ISL_492133
 2020-03-19 2020-07-20
 Australia hCoV-19/Australia/SAP368/2020
 C241T C3037T G8303A C14408T A23403G GGG28881AAC

EPI_ISL_492137
 2020-03-19 2020-07-20
 Australia hCoV-19/Australia/SAP372/2020
 AT1- C241T C1059T A2015G C3037T C14408T A23403G G25563T

EPI_ISL_492160
 2020-03-19 2020-07-20
 Australia hCoV-19/Australia/SAP395/2020
 ATTAAAGGTT1- C241T C3037T T7855C G8303A C14408T A23403G GGG28881AAC

EPI_ISL_492161
 2020-03-19 2020-07-20
 Australia hCoV-19/Australia/SAP396/2020
 ATTAAAGGTTTATACC1- G1440A G2891A G6463T A27669G

EPI_ISL_493201
 2020-03-19 2020-07-21
 Taiwan hCoV-19/Taiwan/NCKUH-006/2020
 ATTAAAGGTT1- A2480G C2558T G11083T C14805T C23525T G26144T A29872C -29874GCATAGTAGTTGCATACTTGTTTT A29877C AAA29880TTT -29886GGGTTTATG A29890C -29893TTACCTAT -AA29897TTCTGTGGCTATGG A29903C

EPI_ISL_494733
 2020-03-19 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1673/2020
 ATTAAAG1- C241T C1059T C3037T C14408T T19791C A23403G G25563T

EPI_ISL_497786
 2020-03-19 2020-07-25
 China hCoV-19/Hong Kong/HKU-200723-019/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11083T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_497832
 2020-03-19 2020-07-25
 China hCoV-19/Hong Kong/HKU-200723-065/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17747T A17858G C18060T A24694T C25006T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498041
 2020-03-19 2020-07-26
 South Korea hCoV-19/Korea/KCDC2140/2020
 C241T C3037T C14408T A23403G G25429T

EPI_ISL_498551 MT801000
 2020-03-19 2020-07-27
 Lebanon SARS-CoV-2/human/LBN/LB-R8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C14408T A20268G A23403G C26527T G29734C

EPI_ISL_499461
 2020-03-19 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A586F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- ATG1605- C24034T

EPI_ISL_499468
 2020-03-19 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A692F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- ATG1605- C4586T C20270T G22661T

EPI_ISL_499645
 2020-03-19 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A58E7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T1623C C3037T A4797T C14408T A23403G C27046T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_499659
 2020-03-19 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A5D24/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T A6672G C14408T G20275A A23403G

EPI_ISL_499704
 2020-03-19 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A63A9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T C3037T C4551T C14408T T18351C A23403G G25563T C29870A

EPI_ISL_499706
 2020-03-19 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A63F4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- T1910A A2480G C2558T A7259G T8029A G11083T C13860Y C14805T T19119C G26144T C28849T C29870A

EPI_ISL_499726
 2020-03-19 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A6646/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C988T G11083T C14805T T17247C G26144T

EPI_ISL_499732
 2020-03-19 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A66DD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C7609T C14408T T17055C A20268G A23403G

EPI_ISL_499741
 2020-03-19 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A67AD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T C3037T C12473Y C14408T G15380T A23403G G25563T G26428K G27204K

EPI_ISL_499742
 2020-03-19 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A67DA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A2480G C2558T G11083T C14805T G26144T G29414A

EPI_ISL_499743
 2020-03-19 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A67E9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G1440A G2891R C5512T C10507T C29870A

EPI_ISL_499744
 2020-03-19 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A67F8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_499748
 2020-03-19 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A687D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G10097A C14408T C14585Y A23403G C23731T G28580T GGG28881AAC

EPI_ISL_499749
 2020-03-19 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A688C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_499759
 2020-03-19 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A6998/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C875A C1387T C2416T C3037T C3622T C14408T C14786T G20578T A23403G G25563T

EPI_ISL_499766
 2020-03-19 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A6A4A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C106Y C241T C3037T G10097A C14408T A23403G C23731T GGG28881AAC C29870A

EPI_ISL_499776
 2020-03-19 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A6B65/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_500115
 2020-03-19 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A53D7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G10097A T13216G C14408T A23403G C23731T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_500116
 2020-03-19 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A545C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G10097A C14408T A23403G C23731T GGG28881AAC

EPI_ISL_500133
 2020-03-19 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A561A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T G21624T A23403G GGG28881AAC

EPI_ISL_500134
 2020-03-19 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A5629/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C10755Y G11083T C14805T T17247C G26144T

EPI_ISL_500510
 2020-03-19 2020-07-29
 United States hCoV-19/USA/CO-UW-MAYO39/2020
 ATTAAAG1- AACC34TTTA C241T C1059T C3037T C11471T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_500638
 2020-03-19 2020-07-29
 Australia hCoV-19/Australia/NSW2164/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G578A C8782T C17747T A17858G C18060T A24694T T28144C C29606T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500639
 2020-03-19 2020-07-29
 Australia hCoV-19/Australia/NSW2168/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6312A G11083T C11779T C13730T C23929T C28311T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500640
 2020-03-19 2020-07-29
 Australia hCoV-19/Australia/NSW2169/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6312A G6753A C11074T G11083T C13730T C23929T A25615G C28311T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500641
 2020-03-19 2020-07-29
 Australia hCoV-19/Australia/NSW2170/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C8782T A17585T T18736C G19684T C24034T T26729C C27635T G28077C T28144C G29690T A29700G CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500645
 2020-03-19 2020-07-29
 Australia hCoV-19/Australia/NSW2174/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10851T C14408T A23403G G25563T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500647
 2020-03-19 2020-07-29
 Australia hCoV-19/Australia/NSW2176/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500648
 2020-03-19 2020-07-29
 Australia hCoV-19/Australia/NSW2181/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500661
 2020-03-19 2020-07-29
 Australia hCoV-19/Australia/NSW2201/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G17808T A21405T A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500675
 2020-03-19 2020-07-29
 Australia hCoV-19/Australia/NSW2227/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500677
 2020-03-19 2020-07-29
 Australia hCoV-19/Australia/NSW2229/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7438C C14408T A23403G C29353T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500678
 2020-03-19 2020-07-29
 Australia hCoV-19/Australia/NSW2231/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_501225
 2020-03-19 2020-07-31
 Malaysia hCoV-19/Malaysia/9136/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C3817T C6312A G11083T C13730T C19524T C23929T C28311T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_501226
 2020-03-19 2020-07-31
 Malaysia hCoV-19/Malaysia/9593/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G1440A C7011T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_501614
 2020-03-19 2020-07-31
 United Kingdom hCoV-19/England/EKHU-260EF54/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507084
 2020-03-19 2020-08-03
 United Kingdom hCoV-19/England/LOND-124D318/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23403G GGG28881AAC G29645T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_507086
 2020-03-19 2020-08-03
 United Kingdom hCoV-19/England/LOND-124D345/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G11083T T11661C C12115T G13627T C14805T C15540T G26144T A28338G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_507718
 2020-03-19 2020-08-03
 United States hCoV-19/USA/MI-MDHHS-SC21464/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C1059T C2723T C3037T C11866T C14408T G21423R A23403G G25563T C27476Y ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_507973
 2020-03-19 2020-08-03
 United States hCoV-19/USA/MN-MDH-1386/2020
 ATTAAAGGT1- C241T C3037T C6762T C14408T A23403G GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_508122
 2020-03-19 2020-08-04
 Australia hCoV-19/Australia/SAP184/2020
 ATTA1- C241T C1059T C3037T C14408T A23403G G25563T G25879T

EPI_ISL_508140
 2020-03-19 2020-08-04
 Australia hCoV-19/Australia/SAP450/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_508777 MT834619
 2020-03-19 2020-08-04
 United States SARS-CoV-2/human/USA/FL-BPHL-0573/2020
 A1- C241T C1059T C3037T C5884T C13487T C14408T C22858T A23403G G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_508778 MT834620
 2020-03-19 2020-08-04
 United States SARS-CoV-2/human/USA/FL-BPHL-0574/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C5884T C7834T C13487T C14408T C22858T A23403G G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_508804 MT834648
 2020-03-19 2020-08-04
 United States SARS-CoV-2/human/USA/FL-BPHL-0600/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C1059T C1917T C3037T C14408T A23403G G25563T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_508870
 2020-03-19 2020-08-04
 Switzerland hCoV-19/Switzerland/1000486784/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C3037T C14408T C15324T G20489T A23403G TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_509002
 2020-03-19 2020-08-04
 France hCoV-19/France/ARA1125/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATG1- C241T C2416T C3037T G8371T C14408T A23403G G25563T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_509495
 2020-03-19 2020-08-05
 Australia hCoV-19/Australia/NSW2055/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_509496
 2020-03-19 2020-08-05
 Australia hCoV-19/Australia/NSW2063/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C8782T A17585T T18736C G19684T C24034T T26729C C27635T G28077C T28144C G29690T A29700G CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_509508
 2020-03-19 2020-08-05
 Australia hCoV-19/Australia/NSW2180/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G11083T C14805T G26144T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_509510
 2020-03-19 2020-08-05
 Australia hCoV-19/Australia/NSW2184/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A23403G G25563T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_509701 MT844034
 2020-03-19 2020-08-05
 Guatemala SARS-CoV-2/human/GTM/CDC-1234/2020
 T490A G1590A C3177T C8782T T18736C G19684T C24034T T26729C C27635T G28077C T28144C A29700G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_510929
 2020-03-19 2020-08-07
 Portugal hCoV-19/Portugal/PT0670/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T C21242T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511053
 2020-03-19 2020-08-07
 Portugal hCoV-19/Portugal/PT0794/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T A6569G C14408T A20268G A23403G C25117T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511054
 2020-03-19 2020-08-07
 Portugal hCoV-19/Portugal/PT0795/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T A6569G C14408T A20268G A23403G C25117T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511055
 2020-03-19 2020-08-07
 Portugal hCoV-19/Portugal/PT0796/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C13680T C14408T C17104T A23403G A26530G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511056
 2020-03-19 2020-08-07
 Portugal hCoV-19/Portugal/PT0797/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G A26530G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511057
 2020-03-19 2020-08-07
 Portugal hCoV-19/Portugal/PT0798/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511058
 2020-03-19 2020-08-07
 Portugal hCoV-19/Portugal/PT0799/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- G1957A C2143T C8782T T9477A C14805T A25725G G25785T G25979T T28144C C28657T C28863T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511059
 2020-03-19 2020-08-07
 Portugal hCoV-19/Portugal/PT0800/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G G26101T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511060
 2020-03-19 2020-08-07
 Portugal hCoV-19/Portugal/PT0801/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T T658C C3037T C14408T G15906T A23403G A24862G C28629T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511062
 2020-03-19 2020-08-07
 Portugal hCoV-19/Portugal/PT0803/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511063
 2020-03-19 2020-08-07
 Portugal hCoV-19/Portugal/PT0804/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511064
 2020-03-19 2020-08-07
 Portugal hCoV-19/Portugal/PT0805/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511065
 2020-03-19 2020-08-07
 Portugal hCoV-19/Portugal/PT0806/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC C29025T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511144
 2020-03-19 2020-08-07
 Portugal hCoV-19/Portugal/PT0886/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCT1- C241T C3037T C14408T A23403G G25650T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511146
 2020-03-19 2020-08-07
 Portugal hCoV-19/Portugal/PT0888/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C2416T C3037T A7479G C12513T C14408T C21575T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511222
 2020-03-19 2020-08-07
 Portugal hCoV-19/Portugal/PT1261/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T C22450T A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511223
 2020-03-19 2020-08-07
 Portugal hCoV-19/Portugal/PT1262/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T C22450T A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511225
 2020-03-19 2020-08-07
 Portugal hCoV-19/Portugal/PT1264/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T G19677T A23403G G28655T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511226
 2020-03-19 2020-08-07
 Portugal hCoV-19/Portugal/PT1265/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T G16744A A20268G G21190A A23403G T26301G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511228
 2020-03-19 2020-08-07
 Portugal hCoV-19/Portugal/PT1267/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C313T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511230
 2020-03-19 2020-08-07
 Portugal hCoV-19/Portugal/PT1269/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C10319T C14408T C16575T A20268G A23403G C28854T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511296
 2020-03-19 2020-08-07
 Portugal hCoV-19/Portugal/PT1337/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511297
 2020-03-19 2020-08-07
 Portugal hCoV-19/Portugal/PT1338/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C14408T A23403G GGG28881AAC C29197T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511298
 2020-03-19 2020-08-07
 Portugal hCoV-19/Portugal/PT1339/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G246T C3037T C14408T A23403G G24098T C25714T G27703T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511299
 2020-03-19 2020-08-07
 Portugal hCoV-19/Portugal/PT1340/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTC1- C241T C3037T C3140T C14408T A23403G G24077T T28705C C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511301
 2020-03-19 2020-08-07
 Portugal hCoV-19/Portugal/PT1342/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A20268G G21538T A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511446
 2020-03-19 2020-08-07
 Portugal hCoV-19/Portugal/PT1487/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A20268G A23403G T29726- TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511448
 2020-03-19 2020-08-07
 Portugal hCoV-19/Portugal/PT1489/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A20268G A23403G T29726- TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_512656
 2020-03-19 2020-08-11
 Costa Rica hCoV-19/Costa Rica/INC-0050/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATC1- C241T G2329A C3037T C14408T A20268G A23403G C26208T G28248T AAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29813-

EPI_ISL_513300 MT704818
 2020-03-19 2020-07-03
 Germany SARS-CoV-2/human/DEU/SCoV2_3ZK/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_513460 MT886334
 2020-03-19 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0049/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAA1- C241T C1059T C3037T G8102T C14408T G14712A C14877T C17738A A23403G G25563T AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513461 MT886335
 2020-03-19 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0050/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATC1- G204T C241T C1059T C3037T G8676T C14408T A23403G C23733A G25563T AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513462 MT886336
 2020-03-19 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0051/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATT1- T490A C3177T C4543T G4720T C8782T T18736C G19684T C24034T C26681T T26729C C27635T G28077C T28144C A29700G AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513476 MT886350
 2020-03-19 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0065/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAAT1- C241T T1918C C3037T C14408T C18877T A23403G G25563T AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513484 MT886358
 2020-03-19 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0073/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAAT1- C241T C1059T C3037T C12809T C14408T A23403G G25563T C26625T AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513485 MT886359
 2020-03-19 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0074/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAA1- C241T C3037T C14408T C22450T A23403G A25864G AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513486 MT886360
 2020-03-19 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0075/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAA1- C241T C3037T C14408T C22450T A23403G AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513489 MT886363
 2020-03-19 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0078/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAA1- A5317G C6558T C8782T C17747T A17858G C18060T G19086T A19476G C27577T T28144C AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513490 MT886364
 2020-03-19 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0079/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGC1- C241T C1059T C3037T C5884T C13487T C14408T C22858T A23403G G24872T G25563T AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513491 MT886365
 2020-03-19 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0080/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAA1- C241T C3037T C14408T C22450T A23403G AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513496 MT886372
 2020-03-19 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0087/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAA1- C241T C3037T C14408T C22450T A23403G A25864G AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513505 MT886381
 2020-03-19 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0096/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAA1- C3317T C8782T C17747T A17858G C18060T A24694T T28144C AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_514461
 2020-03-19 2020-08-17
 United Kingdom hCoV-19/England/PORT-2D1701/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1457T A2480G C2558T C9474T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_514639 MT892986
 2020-03-19 2020-08-17
 United States SARS-CoV-2/human/USA/MN-MDH-1420/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- T490A C2710T C3177T C8782T C9430T T18736C T23677C C24034T T26729C C27635T G28077C T28144C A29700G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_515313
 2020-03-19 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0026/2020
 ATT1- G7016T G25429T G29711T

EPI_ISL_515314
 2020-03-19 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0027/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T C1059T C3037T A7921G C14408T A23403G

EPI_ISL_515315
 2020-03-19 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0028/2020
 ATT1- C241T C379A C1059T C3037T CC14407TT A23403G G25563T

EPI_ISL_515546
 2020-03-19 2020-08-19
 Brazil hCoV-19/Brazil/SP-632/2020
 TTAAAGGTTTATACCTTCCCAGGT2- C241T C3037T C14408T C14491T A23403G G25088T GGG28881AAC GAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29864-

EPI_ISL_515554
 2020-03-19 2020-08-19
 Brazil hCoV-19/Brazil/SP-639/2020
 ATTAAAGGTTTATACCTTCCCAGG1- T25G C241T C3037T C12053T C14408T A23403G G25088T GGG28881AAC C29857T T29859G GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_516270
 2020-03-19 2020-08-20
 United States hCoV-19/USA/MI-MDHHS-SC21543/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C14408T A23403G G25563T TGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29840-

EPI_ISL_516274
 2020-03-19 2020-08-20
 United States hCoV-19/USA/MI-MDHHS-SC21547/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C14408T A23403G G25563T ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_516275
 2020-03-19 2020-08-20
 United States hCoV-19/USA/MI-MDHHS-SC21548/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T G12221R C12534Y C14408T A23403G G25563T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_516277
 2020-03-19 2020-08-20
 United States hCoV-19/USA/MI-MDHHS-SC21550/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C1059T C3037T C14408T A23403G G25563T ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_516278
 2020-03-19 2020-08-20
 United States hCoV-19/USA/MI-MDHHS-SC21551/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C14408T A23403G G25563T TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_516283
 2020-03-19 2020-08-20
 United States hCoV-19/USA/MI-MDHHS-SC21556/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C228T G1397A G3476A C5467T A8848W G9479T A9514G G11083T G26720C T28688C T28835C G29742T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_516864
 2020-03-19 2020-08-24
 United Kingdom hCoV-19/England/LOND-125FFC4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T C4320T C11074T G11083T C14805T T19692G G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516924
 2020-03-19 2020-08-24
 Montenegro hCoV-19/Montenegro/ChVir-1268662002/2020
 ATTAAAGGTTT1- C241T C3037T C9344T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_518861 MT920000
 2020-03-19 2020-08-25
 United States SARS-CoV-2/human/USA/MN-MDH-1467/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C3037T C11916T C14408T A23403G G25563T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_518894 MT920034
 2020-03-19 2020-08-25
 United States SARS-CoV-2/human/USA/MN-MDH-1501/2020
 ATTAAAGGTTTATACCTTCCCA1- C8782T C17747T A17858G C18060T G23755T A24694T T28144C GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_518895 MT920035
 2020-03-19 2020-08-25
 United States SARS-CoV-2/human/USA/MN-MDH-1502/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A20755C A23403G G25563T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_520743
 2020-03-19 2020-08-25
 United Arab Emirates hCoV-19/United Arab Emirates/L9584510/2020
 C241T C3037T G11083T C14408T A23403G GGG28881AAC

EPI_ISL_523291
 2020-03-19 2020-08-26
 Netherlands hCoV-19/Netherlands/LI-EMC-86/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T C26305T GTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29828-

EPI_ISL_523471
 2020-03-19 2020-08-26
 Netherlands hCoV-19/Netherlands/un-EMC-716/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- C17410T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523472
 2020-03-19 2020-08-26
 Netherlands hCoV-19/Netherlands/un-EMC-717/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C5512T C11109T C14408T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523965
 2020-03-19 2020-08-27
 Brazil hCoV-19/Brazil/SP-166/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T G11083T C12053T C14408T A23403G G25088T GGG28881AAC CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_524801
 2020-03-19 2020-08-28
 Brazil hCoV-19/Brazil/PB-IEC-161853/2020
 C241T C3037T C14408T C15324T C16428T G18651T A23403G

EPI_ISL_525543
 2020-03-19 2020-08-31
 France hCoV-19/France/ARA11231/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C14408T A23403G GGG28881AAC TATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29832-

EPI_ISL_525623
 2020-03-19 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-24149-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_526435
 2020-03-19 2020-09-01
 United Kingdom hCoV-19/England/PORT-2D1FBE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16289T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526800
 2020-03-19 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0579/2020
 ATTAAAGGTTTA1- G1440A G2891A A6944G C9430T A29871R AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_528223
 2020-03-19 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42198617/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T T8059C C14408T C15324T C15654T A23403G ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_528224
 2020-03-19 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42198619/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T G6553T C8950T C13862T C14408T A23403G C28836T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_528225
 2020-03-19 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42198620/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G6553T C8950T C13862T C14408T A23403G C28836T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528227
 2020-03-19 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42198664/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C12076T T12739C C14408T C15324T A23403G TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_528229
 2020-03-19 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42198756/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T C21575T A23403G TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_528231
 2020-03-19 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42198812/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- G101A C241T C3037T G12167T C14408T C15324T A23403G C26142T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528232
 2020-03-19 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42198823/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528233
 2020-03-19 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42198935/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A2590G C3037T C14408T C15324T A23403G C26013T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528235
 2020-03-19 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42199036/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T A13947T C14408T A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528236
 2020-03-19 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42199076/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528239
 2020-03-19 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42199265/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C7834T C8782T T9477A C14805T G25979T C26681T T28144C C28657T C28863T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528267
 2020-03-19 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42200091/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T TAG423- C3037T C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528539
 2020-03-19 2020-09-08
 Brazil hCoV-19/Brazil/RJ-LVM161-2/2020
 C8782T T9477A C14805T A22151G G25979T T28144C C28657T C28863T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_530040
 2020-03-19 2020-09-10
 Spain hCoV-19/Spain/MD-LP111/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T17763C A20268G T21883C A23403G C28153T C29249T G29734C ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_534849
 2020-03-19 2020-09-14
 United Kingdom hCoV-19/England/OXON-B32D9/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_534850
 2020-03-19 2020-09-14
 United Kingdom hCoV-19/England/OXON-B3312/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T A23403G GGG28881AAC AAAA29900W

EPI_ISL_535865
 2020-03-19 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00227658/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535866
 2020-03-19 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00227663/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535869
 2020-03-19 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00227996/2020
 ATTAAA1- C241T C3037T C14408T A20268G A23403G C26313T TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_535871
 2020-03-19 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00228149/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5730T C8208T G9267A T9667C C14408T A23403G G25947T G28361A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535885
 2020-03-19 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00229136/2020
 ATTAAA1- C8782T C17747T A17858G C18060T T28144C TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_535905
 2020-03-19 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00229929/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G21624T A23403G A26530G C29640T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536548
 2020-03-19 2020-09-16
 Peru hCoV-19/Peru/LIM-INS-155/2020
 ATTA1- C241T C3037T C14408T C18877T A23403G G25563T TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_536550
 2020-03-19 2020-09-16
 Peru hCoV-19/Peru/LIM-INS-157/2020
 ATTAAAG1- C241T C3037T G10265A C14408T A23403G GGG28881AAC TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_537597
 2020-03-19 2020-09-16
 United States hCoV-19/USA/CA-UCLA-72/2020
 A1- C241T C2416T C3037T C14408T A23403G G25563T G26233T AAAAAAA29897-

EPI_ISL_537604
 2020-03-19 2020-09-16
 United States hCoV-19/USA/CA-UCLA-87/2020
 ATTAAAGGTTTAT1- C37T C241T C1059T C3037T C9967T C14408T A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_539525
 2020-03-19 2020-09-18
 Spain hCoV-19/Spain/CL-ISCIII-204996/2020
 ATTA1- C241T C3037T C14408T A20268G A23403G

EPI_ISL_540924
 2020-03-19 2020-09-22
 Peru hCoV-19/Peru/ARE-UPCH-0016/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C241T C3037T G4657T C5907T C6543T C14408T C15277T A21917G A23403G C24023T G24116T C25872T A26530G AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_541344
 2020-03-19 2020-09-22
 Brazil hCoV-19/Brazil/PR-5621/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C12053T C14408T A23403G G25088T GGG28881AAC GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_541374
 2020-03-19 2020-09-22
 Brazil hCoV-19/Brazil/SE-6533/2020
 ATTAAAGG1- C241T C3037T C14408T A23403G C25688T A28779G GGG28881AAC GAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29781-

EPI_ISL_541376
 2020-03-19 2020-09-22
 Brazil hCoV-19/Brazil/SE-6536/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T C20032T A23403G T27299C GGG28881AAC T29148C GCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29783-

EPI_ISL_547483
 2020-03-19 2020-09-24
 Netherlands hCoV-19/Netherlands/NB-RIVM-10053/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A24862G G25677A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549024
 2020-03-19 2020-09-28
 Sweden hCoV-19/Sweden/RV-FOI-5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560594
 2020-03-19 2020-09-29
 France hCoV-19/France/HDF8242/2020
 T42C C241T C2416T C3037T C14408T A23403G G25563T A29879R AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_560661
 2020-03-19 2020-09-29
 United Kingdom hCoV-19/England/GSTT-5203/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_563817
 2020-03-19 2020-09-30
 Australia hCoV-19/Australia/VIC13728/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17747Y A17858G C18060T T28144C TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_565984
 2020-03-19 2020-09-30
 United States hCoV-19/USA/MI-MDHHS-SC21924/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T A5011M C14408T A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_568515
 2020-03-19 2020-10-02
 Peru hCoV-19/Peru/JUN-UPCH-0118/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T C12534T C14408T C18877T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_568581
 2020-03-19 2020-10-02
 Thailand hCoV-19/Thailand/Bangkok-CONI-0216/2020
 ATTA1- A895G C2942T G4390T C8782T C9598T G20134T G24047A G27877T T28144C AAAAAAAAAAA29893-

EPI_ISL_568582
 2020-03-19 2020-10-02
 Thailand hCoV-19/Thailand/Bangkok-CONI-0217/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- A895G C2942T G4390T C8782T C9598T G20134T G24047A G27877T T28144C

EPI_ISL_568583
 2020-03-19 2020-10-02
 Thailand hCoV-19/Thailand/Bangkok-CONI-0219/2020
 ATTAAAGGTTTATACC1- A895G C2942T G4390T C8782T C9598T G20134T G24047A G27877T T28144C ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_569465
 2020-03-19 2020-10-02
 France hCoV-19/France/IHU-0340/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1059T C3037T T13006C C14408T A23403G G25563T C25688T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

MT318827
 2020-03-19 2020-04-08
 Germany SARS-CoV-2/human/DEU/HH-1/2020
 G160A C241T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

MT350263
 2020-03-19 2020-04-16
 United States SARS-CoV-2/human/USA/USA-WA_0480/2020
 C8782T T11320C C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

MT350264
 2020-03-19 2020-04-16
 United States SARS-CoV-2/human/USA/USA-WA_0428/2020
 C8782T T11320C C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

MT350265
 2020-03-19 2020-04-16
 United States SARS-CoV-2/human/USA/USA-WA_0427/2020
 C8782T T11320C C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

MT350266
 2020-03-19 2020-04-16
 United States SARS-CoV-2/human/USA/USA-WA_0434/2020
 C8782T T11320C C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

MT350267
 2020-03-19 2020-04-16
 United States SARS-CoV-2/human/USA/USA-WA_0442/2020
 C8782T T11320C C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

MT350268
 2020-03-19 2020-04-16
 United States SARS-CoV-2/human/USA/USA-WA_0418/2020
 C3784T C8782T T11320C C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

MT350270
 2020-03-19 2020-04-16
 United States SARS-CoV-2/human/USA/USA-WA_0432/2020
 C8782T C17747T A17858G C18060T G23120T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

MT350272
 2020-03-19 2020-04-16
 United States SARS-CoV-2/human/USA/USA-WA_0448/2020
 C8782T T11320C C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

MT350273
 2020-03-19 2020-04-16
 United States SARS-CoV-2/human/USA/USA-WA_0478/2020
 C8782T T11320C C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

MT350274
 2020-03-19 2020-04-16
 United States SARS-CoV-2/human/USA/USA-WA_0422/2020
 C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

MT350275
 2020-03-19 2020-04-16
 United States SARS-CoV-2/human/USA/USA-WA_0484/2020
 C8782T T11320C C17747T A17858G C18060T T28144C C28873T AAAAAAAAAAAAAAAAAAAAA29883-

MT350276
 2020-03-19 2020-04-16
 United States SARS-CoV-2/human/USA/USA-WA_0429/2020
 C8782T T11320C C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

MT350277
 2020-03-19 2020-04-16
 United States SARS-CoV-2/human/USA/USA-WA_0441/2020
 C8782T T11320C G17302T C17747T A17858G T28144C AAAAAAAAAAAAAAAAAAAAA29883-

MT350278
 2020-03-19 2020-04-16
 United States SARS-CoV-2/human/USA/USA-WA_0440/2020
 C8782T T11320C C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

MT350279
 2020-03-19 2020-04-16
 United States SARS-CoV-2/human/USA/USA-WA_0711/2020
 C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

MT350280
 2020-03-19 2020-04-16
 United States SARS-CoV-2/human/USA/USA-WA_0447/2020
 C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

MT371572
 2020-03-19 2020-04-15
 Czech Republic SARS-CoV-2/human/CZE/CzechiaMotol_2174/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCAT1- C241T C3037T C14408T A21643C C22432T A23403G GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

MT459862
 2020-03-19 2020-05-11
 Greece SARS-CoV-2/human/GRC/146_35473/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- GTTATG515- A2480G C2558T G11083T C14805T G26144T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

MT459868
 2020-03-19 2020-05-11
 Greece SARS-CoV-2/human/GRC/155_35480/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

MT477839
 2020-03-19 2020-05-14
 United States SARS-CoV-2/human/USA/AK013/2020
 ATTAAAGGTTTA1- C241T C3037T C6504T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

MT509457
 2020-03-19 2020-05-22
 United States SARS-CoV-2/human/USA/MD-HP00036/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G11083T C14408T G15594A A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT509460
 2020-03-19 2020-05-22
 United States SARS-CoV-2/human/USA/MD-HP00041/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T T28393C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT510722
 2020-03-19 2020-05-25
 United States SARS-CoV-2/human/USA/hCoV-19-USA-CA-UCSF-UC44/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C1059T C3037T C14408T A23403G G25563T C29614T TGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29840-

MT510723
 2020-03-19 2020-05-25
 United States SARS-CoV-2/human/USA/hCoV-19-USA-CA-UCSF-UC45/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C11674T C14408T A23403G C27046T GGG28881AAC TACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29760-

MT671813
 2020-03-19 2020-06-26
 United States SARS-CoV-2/human/USA/CA-CZB-1757/2020
 ATTAAAGGTTTAT1- G27670T

MT671814
 2020-03-19 2020-06-26
 United States SARS-CoV-2/human/USA/CA-CZB-1758/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT706164
 2020-03-19 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-43/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C2695T A10323G G11083T C14805T T17247C G26144T G29262T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706168
 2020-03-19 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-47/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T9697C T18765C G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706178
 2020-03-19 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-57/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11417T T14073C C14408T A23403G A23947G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706181
 2020-03-19 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-60/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3871T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706190
 2020-03-19 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-69/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T G16381A T17877C C20316T G25500T G26211T T28144C G28878A G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706191
 2020-03-19 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-70/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T G16381A T17877C C20316T G25500T T28144C G28878A G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706198
 2020-03-19 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-77/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G558T C8782T G16381A T17877C C20316T G25500T G26211T T28144C G28878A G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706296
 2020-03-19 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-168/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706297
 2020-03-19 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-169/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706298
 2020-03-19 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-170/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706299
 2020-03-19 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-171/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706300
 2020-03-19 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-172/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C18877T G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT810538
 2020-03-19 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1673-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T T19791C A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810563
 2020-03-19 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0431-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T C16762T A23403G G25563T C26885T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810915
 2020-03-19 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0177-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C8389T C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810963
 2020-03-19 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0258-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C1887T C3037T C14408T A23403G G25563T C26873T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MW030215
 2020-03-19 2020-09-22
 Peru SARS-CoV-2/human/PER/covper079/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGT1- C241T C3037T C14408T C18877T A23403G G25563T C29675- ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

MW030217
 2020-03-19 2020-09-22
 Peru SARS-CoV-2/human/PER/covper081/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGT1- C241T C3037T G10265A C14408T A23403G GGG28881AAC C29675- ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

MW047307
 2020-03-19 2020-09-29
 United States SARS-CoV-2/human/USA/WRCEVA_000501/2020
 C241T C1059T C3037T C14408T A23403G G25563T

MW047308
 2020-03-19 2020-09-29
 United States SARS-CoV-2/human/USA/WRCEVA_000502/2020
 C241T C1059T C3037T G3068A C9169T C14408T A23403G G25563T

EPI_ISL_416744
 2020-03-20 2020-03-23
 Hungary hCoV-19/Hungary/mbl49/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8293T A11839G C14408T C16575T T19839C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417028 MT334538
 2020-03-20 2020-03-23
 United States SARS-CoV-2/human/USA/UT-00020/2020
 C1102T T2992C C8782T C17747T A17858G C18060T T28144C C29774T

EPI_ISL_417917 MT372481
 2020-03-20 2020-03-27
 Malaysia SARS-CoV-2/human/MYS/189332/2020
 A1Y TAA3WBM T2737A C6310A C6312A G11083T C13730T G13975A C19524T C23929T C28311T T29859W GG29861AA G29864A TG29867AA C29870A

EPI_ISL_417950
 2020-03-20 2020-03-27
 Democratic Republic of the Congo hCoV-19/DRC/158/2020
 ATTA1- A2480G C2558T G11083T C14805T C20402T G24926T G26144T G29254T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_418328
 2020-03-20 2020-03-20
 Canada hCoV-19/Canada/ON_PHL3670/2020
 A1- G1440A G2891A C7011T G25593C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418350
 2020-03-20 2020-03-20
 Canada hCoV-19/Canada/ON_PHL3380/2020
 A1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_419174
 2020-03-20 2020-04-01
 France hCoV-19/France/ARA11980/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_419264
 2020-03-20 2020-04-01
 Belgium hCoV-19/Belgium/UGent-12/2020
 C241T C3037T C14408T T19839C A23403G C24099T GGG28881AAC

EPI_ISL_419300 LC547522
 2020-03-20 2020-04-02
 Japan hCoV-19/Japan/P3-2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C3037T C4321T C14408T C18877T A23403G G25563T TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_419306 LC547528
 2020-03-20 2020-04-02
 Japan hCoV-19/Japan/P4-6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C3037T C14408T C23248T A23403G GGG28881AAC CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_419307 LC547529
 2020-03-20 2020-04-02
 Japan hCoV-19/Japan/P4-7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T C3037T C14408T C23248T A23403G GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_419472
 2020-03-20 2020-04-02
 United Kingdom hCoV-19/Wales/PHWC-24A35/2020
 ATT1- G1440A G2891A C25669T G28851T

EPI_ISL_419474
 2020-03-20 2020-04-02
 United Kingdom hCoV-19/Wales/PHWC-24A62/2020
 AT1- G1440A G2891A G28851T

EPI_ISL_419496
 2020-03-20 2020-04-02
 United Kingdom hCoV-19/Wales/PHWC-24BC9/2020
 A1515G C9223T G11083T T13064C C14805T T17247C C17747T G26006C G26144T

EPI_ISL_419499
 2020-03-20 2020-04-02
 United Kingdom hCoV-19/Wales/PHWC-24BF6/2020
 A1- G1440A C2371T G2891A G28851T

EPI_ISL_419508
 2020-03-20 2020-04-02
 United Kingdom hCoV-19/Wales/PHWC-24D87/2020
 G1440A G2891A C18312T T25051C G28851T

EPI_ISL_419675
 2020-03-20 2020-04-03
 Spain hCoV-19/Spain/Valencia11/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T T18834C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_419725 MT451023
 2020-03-20 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC114/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A20268G A23403G

EPI_ISL_419728 MT451033
 2020-03-20 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC126/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- A38G C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T

EPI_ISL_419729 MT451034
 2020-03-20 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC127/2020
 ATTAAAGGT1- A2480G C2558T T6971C G6975T G6977A C9170T G11083T C14805T G26144T

EPI_ISL_419730 MT451035
 2020-03-20 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC128/2020
 ATTAAAGGTTTA1- C241T C2507T C3037T C3373A C14408T A23403G GGG28881AAC

EPI_ISL_419731 MT451032
 2020-03-20 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC123/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C2507T C3037T C3373A C14408T GGG28881AAC

EPI_ISL_419732
 2020-03-20 2020-04-03
 Australia hCoV-19/Australia/VIC129/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- ATG1605- C1912T

EPI_ISL_419903 MT451109
 2020-03-20 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC208/2020
 ATTA1- A7479G C11074T G11083T C14805T T17247C C25572T G26144T C28887T

EPI_ISL_419904 MT451110
 2020-03-20 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC209/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- T490A C3177T C6040T C8782T C8950T G12478A T18736C T19713C C24034T T26729C G28077C T28144C C28896G C29451T A29700G

EPI_ISL_419906 MT451112
 2020-03-20 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC211/2020
 ATTA1- C241T C1059T C3037T C14408T G17562T A23403G G25563T

EPI_ISL_419908 MT451114
 2020-03-20 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC213/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C8782T C17747T A17858G C18060T A24694T T28144C

EPI_ISL_419909 MT451115
 2020-03-20 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC214/2020
 A1- C241T C1059T C3037T G3307A C14408T A23403G G25563T

EPI_ISL_419910 MT451116
 2020-03-20 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC215/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- T490A C3177T C8782T T18736C G19684T C24034T T26729C C27635T G28077C T28144C A29700G

EPI_ISL_419911 MT451117
 2020-03-20 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC216/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C2523T C3037T C14408T A23403G G25563T

EPI_ISL_419912 MT451118
 2020-03-20 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC217/2020
 AT1- C241T G613A C3037T C14408T G22346A A23403G

EPI_ISL_419913 MT451119
 2020-03-20 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC218/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C527T A2480G C2558T G11083T T11182C C13721T C14805T G23593T G26144T C26885T

EPI_ISL_419914 MT451120
 2020-03-20 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC219/2020
 ATTAA1- C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_419915 MT451121
 2020-03-20 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC220/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T C3037T C5211Y C14408T C17985T A23403G C23423T C24844T G25563T C29353T

EPI_ISL_419916 MT641651
 2020-03-20 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC221/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T TGTTATGGT514- C2416T C3037T G8371T C14408T C14688T A23403G G25563T

EPI_ISL_419917 MT451122
 2020-03-20 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC222/2020
 C8782T A9307G G13118T C17747T A17858G C18060T C22480T A24694T T28144C

EPI_ISL_419918 MT451123
 2020-03-20 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC223/2020
 ATT1- C3096T G11083T C12781T G13627T C14805T C15540T G17944T G26144T A28338G

EPI_ISL_419919 MT451124
 2020-03-20 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC224/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T G613A C3037T C14408T G22346A A23403G

EPI_ISL_419920 MT451125
 2020-03-20 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC225/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G957A C8782T G11083T C17747T A17858G C18060T T28144C

EPI_ISL_419921 MT451126
 2020-03-20 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC226/2020
 ATTAAAGG1- C241T A1015G C3037T A3625C C14408T T17688C A23403G GGG28881AAC

EPI_ISL_419922 MT451127
 2020-03-20 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC227/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C1059T T1368Y C3037Y C6990T G11083K C14408Y C14805Y C20736T A23403G C24844Y G25563T G26558K

EPI_ISL_419923 MT451128
 2020-03-20 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC228/2020
 A1- C241T A1015G C3037T A3625C C14408T T17688C A23403G GGG28881AAC A29865R

EPI_ISL_420020 MT322416
 2020-03-20 2020-04-08
 United States SARS-CoV-2/human/USA/VA-DCLS-0036/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C3037T C14408T C14925T A23403G G25563T C29870M

EPI_ISL_420052
 2020-03-20 2020-04-04
 France hCoV-19/France/IDF3029/2020
 C241T C3037T G9130T T13273C C14408T A23403G C24381T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_420058
 2020-03-20 2020-04-04
 France hCoV-19/France/IDF3163/2020
 C241T C1059T C3037T T13006C C14408T A23403G G25563T C25688T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_420060
 2020-03-20 2020-04-04
 France hCoV-19/France/IDF3170/2020
 C241T C2416T C3037T C10450T C14408T T17075A A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_420074
 2020-03-20 2020-04-04
 Senegal hCoV-19/Senegal/600/2020
 A80G C241T C3037T C14408T A23403G G28116A

EPI_ISL_420076
 2020-03-20 2020-04-04
 Senegal hCoV-19/Senegal/611/2020
 C241T C2416T C3037T G8371T C14408T A23403G G25563T

EPI_ISL_420077
 2020-03-20 2020-04-04
 Senegal hCoV-19/Senegal/618/2020
 C8782T G22468T T28144C G28878A C29149T G29742A

EPI_ISL_420085
 2020-03-20 2020-04-05
 Taiwan hCoV-19/Taiwan/107/2020
 ATTAA1- C241T C1059T C3037T C14408T A23403G C23679T G25563T G28857A GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_420284
 2020-03-20 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C0576/2020
 ATG1605- T4949C G6734A C16887T

EPI_ISL_420285
 2020-03-20 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C060A/2020
 C2558T G11083T C14805T G26144T C29167T

EPI_ISL_420357
 2020-03-20 2020-04-06
 Belgium hCoV-19/Belgium/JLJ-0320101/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G4706C G8459T G10496T G11083T C14805T T17247C C19448T A23403G TAT24259ATA G24474T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420363
 2020-03-20 2020-04-06
 Belgium hCoV-19/Belgium/VNP-0320107/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420629 MT322415
 2020-03-20 2020-04-08
 United States SARS-CoV-2/human/USA/VA-DCLS-0034/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T C14925T A23403G G25563T C29870A

EPI_ISL_420929
 2020-03-20 2020-04-07
 United Kingdom hCoV-19/Wales/PHWC-25005/2020
 ATTA1- G431A ATG1605- C13860Y C20270T C28725T A29683T

EPI_ISL_421309
 2020-03-20 2020-04-07
 United States hCoV-19/USA/WI-UW-51/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T G16381A T17877C C20316T G25500T C26124T T28144C G28878A G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421312
 2020-03-20 2020-04-07
 United States hCoV-19/USA/WI-UW-54/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10188T C14408T T19071A A23403G T24982C G25563T C25624T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421332
 2020-03-20 2020-04-07
 United States hCoV-19/USA/WI-UW-74/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G15760A A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421459
 2020-03-20 2020-04-08
 Portugal hCoV-19/Portugal/PT0056/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- T514C ATG1605- C28923T CGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29754-

EPI_ISL_421460
 2020-03-20 2020-04-08
 Portugal hCoV-19/Portugal/PT0057/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T G5194T T11698C C14408T A20268G A23403G C25672T C26882T G26951T C28854T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_421461
 2020-03-20 2020-04-08
 Portugal hCoV-19/Portugal/PT0058/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- G1440A G2891A TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_421462
 2020-03-20 2020-04-08
 Portugal hCoV-19/Portugal/PT0059/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C14408T A23403G G25593T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_421463
 2020-03-20 2020-04-08
 Portugal hCoV-19/Portugal/PT0060/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1594T C3037T C11109T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_421466
 2020-03-20 2020-04-08
 Portugal hCoV-19/Portugal/PT0063/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C8782T C26088T T28144C TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_421467
 2020-03-20 2020-04-08
 Portugal hCoV-19/Portugal/PT0064/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C8782T C19263T C26088T T28144C TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_421489
 2020-03-20 2020-04-08
 Portugal hCoV-19/Portugal/PT0086/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- C241T C3037T C14408T G19327T A23403G GGG28881AAC CGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29754-

EPI_ISL_421494
 2020-03-20 2020-04-08
 Portugal hCoV-19/Portugal/PT0091/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC C29296T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_421514
 2020-03-20 2020-04-08
 France hCoV-19/France/CVL3365/2020
 ATTAAAGGTTTATACCTTC1- C241T C3037T C14408T T18411C A20268G A23403G AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_421595 MT371021
 2020-03-20 2020-04-09
 United States SARS-CoV-2/human/USA/NY-PV09020/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C1059T C3037T C14408T A23403G G25563T GTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29759-

EPI_ISL_421612 MT370935
 2020-03-20 2020-04-09
 United States SARS-CoV-2/human/USA/NY-PV09060/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T C1059T C3037T C14408T A23403G G25563T TAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29775-

EPI_ISL_421613 MT370971
 2020-03-20 2020-04-09
 United States SARS-CoV-2/human/USA/NY-PV09061/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C1625T G11083T C14805T T17247C G26144T G28739T GGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29778-

EPI_ISL_421614 MT370973
 2020-03-20 2020-04-09
 United States SARS-CoV-2/human/USA/NY-PV09063/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTT1- C1625T G11083T C14805T T17247C A19166G G26144T TGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29765-

EPI_ISL_421615 MT370968
 2020-03-20 2020-04-09
 United States SARS-CoV-2/human/USA/NY-PV09064/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C1059T G1820A C3037T C10851T C14408T A23403G G25563T C28737T TGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29765-

EPI_ISL_421616 MT370980
 2020-03-20 2020-04-09
 United States SARS-CoV-2/human/USA/NY-PV09067/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C1625T G11083T C14805T T17247C A19166G G26144T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_421617 MT371006
 2020-03-20 2020-04-09
 United States SARS-CoV-2/human/USA/NY-PV09068/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G G25563T GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_421619 MT370933
 2020-03-20 2020-04-09
 United States SARS-CoV-2/human/USA/NJ-PV09072/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C1059T C3037T C14408T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_421620 MT371027
 2020-03-20 2020-04-09
 United States SARS-CoV-2/human/USA/NY-PV09073/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C11916T C14408T C19018T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_421621 MT370949
 2020-03-20 2020-04-09
 United States SARS-CoV-2/human/USA/NY-PV09075/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T C3037T G10265A C14408T C15963T A23403G C26907T GGG28881AAC AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_421623 MT370946
 2020-03-20 2020-04-09
 United States SARS-CoV-2/human/USA/NY-PV09077/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C1059T C3037T C14408T C20555T A23403G G25563T G28077T TAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29775-

EPI_ISL_421624 MT370934
 2020-03-20 2020-04-09
 United States SARS-CoV-2/human/USA/NY-PV09079/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G G25563T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_422507 MT370995
 2020-03-20 2020-04-11
 United States SARS-CoV-2/human/USA/NY-PV09135/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C1059T C3037T C13548T C14408T G21485T A23403G G25563T GTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29759-

EPI_ISL_422508 MT371029
 2020-03-20 2020-04-11
 United States SARS-CoV-2/human/USA/NY-PV09137/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T G6443A A13755G C14408T A23403G G25563T G28827T TAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29775-

EPI_ISL_422511 MT370961
 2020-03-20 2020-04-11
 United States SARS-CoV-2/human/USA/NY-PV09140/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T C1059T C3037T C14408T A23403G G25563T C28969A CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_422513 MT370937
 2020-03-20 2020-04-11
 United States SARS-CoV-2/human/USA/NY-PV09142/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T C2416T C3037T C14408T A23403G G25563T GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_422514 MT370921
 2020-03-20 2020-04-11
 United States SARS-CoV-2/human/USA/NY-PV09143/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C1059T C3037T C14408T A20755C A23403G G25563T GTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29759-

EPI_ISL_422515 MT370948
 2020-03-20 2020-04-11
 United States SARS-CoV-2/human/USA/NY-PV09144/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T C3037T C14408T A23403G G25563T G29511T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_422516 MT370925
 2020-03-20 2020-04-11
 United States SARS-CoV-2/human/USA/NY-PV09145/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C183T C241T C1059T C3037T C7728T C14408T A23403G G25563T AGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29776-

EPI_ISL_422517 MT370985
 2020-03-20 2020-04-11
 United States SARS-CoV-2/human/USA/NY-PV09147/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTT1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_422543 MT371018
 2020-03-20 2020-04-11
 United States SARS-CoV-2/human/USA/NY-PV09186/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G G25563T T29308C AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_422544 MT371015
 2020-03-20 2020-04-11
 United States SARS-CoV-2/human/USA/NY-PV09187/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T T12045C C14408T A23403G G25563T GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_422547 MT370986
 2020-03-20 2020-04-11
 United States SARS-CoV-2/human/USA/NY-PV09190/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T G625T C1059T C3037T G11083T C14408T A23403G G25563T AGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29776-

EPI_ISL_422548 MT370970
 2020-03-20 2020-04-11
 United States SARS-CoV-2/human/USA/NY-PV09192/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T C1059T C3037T C14408T A23403G G25563T C25614T GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_422549 MT370950
 2020-03-20 2020-04-11
 United States SARS-CoV-2/human/USA/NY-PV09193/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C1059T C3037T C14408T A23403G G25563T GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_422550 MT370994
 2020-03-20 2020-04-11
 United States SARS-CoV-2/human/USA/NY-PV09194/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C3037T C14408T C18877T A23403G G25563T C26681T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_422551 MT370932
 2020-03-20 2020-04-11
 United States SARS-CoV-2/human/USA/NY-PV09195/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C619T C1059T C3037T C14408T A14912G A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_422552 MT370988
 2020-03-20 2020-04-11
 United States SARS-CoV-2/human/USA/NY-PV09197/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C11916T C14408T C18998T G22225A A23403G G25563T G29540A GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_422553 MT371036
 2020-03-20 2020-04-11
 United States SARS-CoV-2/human/USA/NY-PV09198/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C1594T C3037T C14408T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_422638 LR877945
 2020-03-20 2020-04-11
 Netherlands hCoV-19/Netherlands/Gelderland_10/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- C2695T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422640 LR877947
 2020-03-20 2020-04-11
 Netherlands hCoV-19/Netherlands/Gelderland_12/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C17502T A23403G C28139A GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422646 LR877949
 2020-03-20 2020-04-11
 Netherlands hCoV-19/Netherlands/Limburg_10/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T658C C3037T C14408T A23403G A24862G C28629T C29253T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422648 LR877946
 2020-03-20 2020-04-11
 Netherlands hCoV-19/Netherlands/Limburg_9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422688 LR877760
 2020-03-20 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_153/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C20148T A23403G G29422T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422693 LR877756
 2020-03-20 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_158/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422694 LR877759
 2020-03-20 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_159/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G20275A A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422859 LR877948
 2020-03-20 2020-04-11
 Netherlands hCoV-19/Netherlands/NoordBrabant_100/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422860 LR877938
 2020-03-20 2020-04-11
 Netherlands hCoV-19/Netherlands/NoordBrabant_101/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10440T C14408T G18615A A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_423181
 2020-03-20 2020-04-12
 United Kingdom hCoV-19/England/20134081904/2020
 C241T C3037T C9891Y C14408T G16146T A23403G A26530R G28739T

EPI_ISL_424007
 2020-03-20 2020-04-12
 United Kingdom hCoV-19/England/20129018904/2020
 A2480G C2558T C4084T G11083T C14805T G20126S G25494T G26144T A26319T

EPI_ISL_424010
 2020-03-20 2020-04-12
 United Kingdom hCoV-19/England/20129020304/2020
 C241T C3037T C11681T C14408T A23403G C25350Y

EPI_ISL_424012
 2020-03-20 2020-04-12
 United Kingdom hCoV-19/England/20129020604/2020
 C241T C2416T C3037T G5642K C14408T C14786T G20578T A23403G T25485C G25563T

EPI_ISL_424024
 2020-03-20 2020-04-12
 United Kingdom hCoV-19/England/20129033804/2020
 A2480G C2558T G11083T C14805T G26144T

EPI_ISL_424025
 2020-03-20 2020-04-12
 United Kingdom hCoV-19/England/20129033904/2020
 C241T C3037T C9474Y C14408T A23403G G25429T

EPI_ISL_424032
 2020-03-20 2020-04-12
 United Kingdom hCoV-19/England/20129036004/2020
 C241T C2940T C3037T C14408T A23403G

EPI_ISL_424037
 2020-03-20 2020-04-12
 United Kingdom hCoV-19/England/20129037204/2020
 A2480G C2558T G11083T C14805T C15368T G25407T C25626T G26144T

EPI_ISL_424186 MT326112
 2020-03-20 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1644/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGT1- G91C C241T C1059T C3037T G4975T C14408T C20823T A23403G G25523T G25563T T27869C AA29902-

EPI_ISL_424187 MT326113
 2020-03-20 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1646/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C241T C1059T C3037T C6040T C14408T A23403G G25563T AAAAAAAAAAAAAA29890-

EPI_ISL_424191 MT326116
 2020-03-20 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1683/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C36T C8782T T11320C C17747T A17858G C18060T T28144C AAAA29900-

EPI_ISL_424192 MT326117
 2020-03-20 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1688/2020
 ATTAAAGG1- G11083T TTT11541- C14805T T17247C G26144T AA29902-

EPI_ISL_424194 MT326119
 2020-03-20 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1661/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C379A C1059T C3037T C14408T A23403G G25563T C27213T -29904ANANANANA

EPI_ISL_424196 MT326121
 2020-03-20 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1666/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAA1- C8782T G10523C C17747T A17858G C18060T T28144C A29903-

EPI_ISL_424198 MT326123
 2020-03-20 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1656/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACT1- T150C T153G AAGTCATTT686- C8782T C17747T A17858G C18060T T28144C AA29902-

EPI_ISL_424199 MT326124
 2020-03-20 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1672/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCA1- GTCATGTTA510- C8782T A17622G C17747T A17858G C18060T T28144C AAA29901-

EPI_ISL_424200 MT326125
 2020-03-20 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1723/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAAT1- C241T C1059T C3037T C14408T A23403G G25563T G29553A G29864A TG29867AA C29870A

EPI_ISL_424202 MT326127
 2020-03-20 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1651/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAA29893-

EPI_ISL_424203 MT326128
 2020-03-20 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1652/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T G2527A C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_424204 MT326129
 2020-03-20 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1698/2020
 ATTAAAG1- AACC34HTHH C241T C1059T C3037T G11083T C14408T A23403G G25563T G29553A A29903-

EPI_ISL_424205 MT326130
 2020-03-20 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1697/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTA1- C241T C1059T C3037T C14408T A23403G G25563T G29553A

EPI_ISL_424207 MT326132
 2020-03-20 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1716/2020
 ATTAAAGGTTTAT1- AACC34TTTH C241T C1059T C3037T G7561A C14408T A23403G G25563T G28881A A29866G A29869T AA29902-

EPI_ISL_424208 MT326133
 2020-03-20 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1712/2020
 ATTAAAG1- G8C TACCTTCCCAGGTAACAAACCAACC13- C241T C1059T C3037T T4597C C14408T A23403G G25563T G29553A AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_424209 MT326134
 2020-03-20 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1765/2020
 ATTAAAGGTTTATACCTTCCCA1- AACC34TTTA C1238T C3593T C4683T C8782T C17747T A17858G C18060T A27200G T28144C T28924C AAAAAAAAAAAAAAAAA29887-

EPI_ISL_424210 MT326135
 2020-03-20 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1718/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATG1- T6345C C8092T C8782T C12534T C17747T A17858G C18060T C26037T T28144C

EPI_ISL_424213 MT326138
 2020-03-20 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1670/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACT1- T150C T153G A6693G C8782T C14877T A17287G C17747T A17858G C18060T T28144C A29188T A29700G TG29867AV -29904AAAAAAAAAA

EPI_ISL_424215 MT326140
 2020-03-20 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1680/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C241T C379A C1059T T2244C C3037T C14408T A23403G G25563T G29291A AAAA29900-

EPI_ISL_424219 MT326144
 2020-03-20 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1695/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCA1- C8782T C17747T A17858G C18060T T28144C A29866V -29904ANANANANA

EPI_ISL_424222 MT326147
 2020-03-20 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1700/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCA1- C8782T C17747T A17858G C18060T T28144C G29868V

EPI_ISL_424249 MT326085
 2020-03-20 2020-04-12
 United States SARS-CoV-2/human/USA/UNKNOWN-UW-1791/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCA1- C8782T C17747T A17858G C18060T T28144C C28887T -29904AAAAAAAAAAAAA

EPI_ISL_424286 MT326041
 2020-03-20 2020-04-12
 United States SARS-CoV-2/human/USA/OR-UW-1849/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTT1- C8782T C15240T C17747T A17858G C18060T G18984T C21774T T28144C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_424321 MT326074
 2020-03-20 2020-04-12
 United States SARS-CoV-2/human/USA/ID-UW-1925/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- AACC34HTTH C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_424322 MT326075
 2020-03-20 2020-04-12
 United States SARS-CoV-2/human/USA/ID-UW-1934/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_424448
 2020-03-20 2020-04-13
 Iceland hCoV-19/Iceland/424/2020
 C5142T G11083T C14805T T17247C G26144T

EPI_ISL_424449
 2020-03-20 2020-04-13
 Iceland hCoV-19/Iceland/425/2020
 C241T C3037T G3548A A10323G C14408T A20268G A23403G

EPI_ISL_424450
 2020-03-20 2020-04-13
 Iceland hCoV-19/Iceland/426/2020
 C241T C3037T A10323G C14408T A20268G A23403G

EPI_ISL_424451
 2020-03-20 2020-04-13
 Iceland hCoV-19/Iceland/427/2020
 C151T C241T G645A C3037T C14408T A23403G A26530G

EPI_ISL_424454
 2020-03-20 2020-04-13
 Iceland hCoV-19/Iceland/430/2020
 C241T C2416T C3037T C14408T C14786T C19884T A23403G G25563T

EPI_ISL_424455
 2020-03-20 2020-04-13
 Iceland hCoV-19/Iceland/431/2020
 C10376T

EPI_ISL_424456
 2020-03-20 2020-04-13
 Iceland hCoV-19/Iceland/432/2020
 C241T C2455T C3037T C10450T C14408T A23403G C24896T

EPI_ISL_424459
 2020-03-20 2020-04-13
 Iceland hCoV-19/Iceland/435/2020
 C241T C3037T C14408T C15324T C21575T A23403G

EPI_ISL_424460
 2020-03-20 2020-04-13
 Iceland hCoV-19/Iceland/436/2020
 C241T C3037T A10323G C14408T A20268G A23403G

EPI_ISL_424461
 2020-03-20 2020-04-13
 Iceland hCoV-19/Iceland/437/2020
 C241T C3037T A10323G C14408T A20268G A23403G

EPI_ISL_424462
 2020-03-20 2020-04-13
 Iceland hCoV-19/Iceland/438/2020
 C8782T T9445C T17531C C17747T A17858G C18060T G18756T A24694T T28144C

EPI_ISL_424463
 2020-03-20 2020-04-13
 Iceland hCoV-19/Iceland/439/2020
 C241T C3037T C14408T C19170T G19509A A23403G G28077T GGG28881AAC

EPI_ISL_424465
 2020-03-20 2020-04-13
 Iceland hCoV-19/Iceland/441/2020
 C241T C2416T C3037T C14408T C14786T C19884T A23403G G25563T

EPI_ISL_424466
 2020-03-20 2020-04-13
 Iceland hCoV-19/Iceland/442/2020
 C241T C3037T C10376T C14408T C16329T C19170T G19509A A23403G G28077T GGG28881AAC

EPI_ISL_424467
 2020-03-20 2020-04-13
 Iceland hCoV-19/Iceland/443/2020
 C241T C3037T C3253T A13928G C14408T A23403G C24054T A25958G C27046T GGG28881AAC

EPI_ISL_424468
 2020-03-20 2020-04-13
 Iceland hCoV-19/Iceland/444/2020
 C241T C3037T C3253T C14408T A23403G C24054T A25958G C27046T GGG28881AAC

EPI_ISL_424469
 2020-03-20 2020-04-13
 Iceland hCoV-19/Iceland/445/2020
 C8782T C17747T A17858G C18060T A24694T T28144C

EPI_ISL_424470
 2020-03-20 2020-04-13
 Iceland hCoV-19/Iceland/446/2020
 C5142T C10641T G11083T C14805T T17247C G26144T

EPI_ISL_424471
 2020-03-20 2020-04-13
 Iceland hCoV-19/Iceland/447/2020
 

EPI_ISL_424472
 2020-03-20 2020-04-13
 Iceland hCoV-19/Iceland/448/2020
 G1440A G2891A A4140G

EPI_ISL_424473
 2020-03-20 2020-04-13
 Iceland hCoV-19/Iceland/449/2020
 A1321C G11083T C14805T T17247C G26144T

EPI_ISL_424474
 2020-03-20 2020-04-13
 Iceland hCoV-19/Iceland/450/2020
 C241T C3037T A10323G C14408T A20268G A20473C A23403G

EPI_ISL_424477
 2020-03-20 2020-04-13
 Iceland hCoV-19/Iceland/454/2020
 C241T C2455T C3037T C10450T C14408T A23403G

EPI_ISL_424478
 2020-03-20 2020-04-13
 Iceland hCoV-19/Iceland/455/2020
 C241T C2455T C3037T C10450T C14408T A23403G

EPI_ISL_424480
 2020-03-20 2020-04-13
 Iceland hCoV-19/Iceland/457/2020
 T3034C G11083T C14805T C16054T T17247C T17859C G26144T A28762G G29751C

EPI_ISL_424482
 2020-03-20 2020-04-13
 Iceland hCoV-19/Iceland/459/2020
 C5142T G11083T C14805T T17247C G26144T

EPI_ISL_424483
 2020-03-20 2020-04-13
 Iceland hCoV-19/Iceland/460/2020
 C241T C3037T A10323G C14408T A20268G A23403G

EPI_ISL_424484
 2020-03-20 2020-04-13
 Iceland hCoV-19/Iceland/461/2020
 C241T C3037T C14408T G16935T A20268G A23403G G29734C

EPI_ISL_424485
 2020-03-20 2020-04-13
 Iceland hCoV-19/Iceland/462/2020
 C241T G526T C3037T C12138T C14408T A23403G GGG28881AAC

EPI_ISL_424486
 2020-03-20 2020-04-13
 Iceland hCoV-19/Iceland/463/2020
 C241T C3037T C14408T A23403G A26530G G29706T

EPI_ISL_424491
 2020-03-20 2020-04-13
 Iceland hCoV-19/Iceland/468/2020
 C241T C1059T C3037T C10319T C14408T G18213T A23403G G25563T

EPI_ISL_424494
 2020-03-20 2020-04-13
 Iceland hCoV-19/Iceland/471/2020
 C241T C3037T C14408T A23403G G27430A GGG28881AAC

EPI_ISL_424496
 2020-03-20 2020-04-13
 Iceland hCoV-19/Iceland/473/2020
 C241T C1059T G1743A C3037T C14408T A23403G G25555T G25563T

EPI_ISL_424499
 2020-03-20 2020-04-13
 Iceland hCoV-19/Iceland/476/2020
 G1440A G2891A A4140G

EPI_ISL_424500
 2020-03-20 2020-04-13
 Iceland hCoV-19/Iceland/477/2020
 C241T C3037T A10323G C14408T A20268G A23403G

EPI_ISL_424502
 2020-03-20 2020-04-13
 Iceland hCoV-19/Iceland/479/2020
 G1440A G2891A C27661T

EPI_ISL_424503
 2020-03-20 2020-04-13
 Iceland hCoV-19/Iceland/480/2020
 A1321C G11083T T11857C C14805T T17247C G26144T

EPI_ISL_424506
 2020-03-20 2020-04-13
 Iceland hCoV-19/Iceland/483/2020
 C241T C3037T C14408T A23403G G27430A GGG28881AAC

EPI_ISL_424507
 2020-03-20 2020-04-13
 Iceland hCoV-19/Iceland/484/2020
 A1321C G11083T C14805T T17247C G26144T C28663T

EPI_ISL_424508
 2020-03-20 2020-04-13
 Iceland hCoV-19/Iceland/485/2020
 C241T C3037T A10323G C14408T A20268G A23403G

EPI_ISL_424509
 2020-03-20 2020-04-13
 Iceland hCoV-19/Iceland/487/2020
 G1440A G2891A A4140G

EPI_ISL_424510
 2020-03-20 2020-04-13
 Iceland hCoV-19/Iceland/488/2020
 C241T C3037T C4002T G10097A C13536T C14408T C19718T A23403G C23731T GGG28881AAC

EPI_ISL_424511
 2020-03-20 2020-04-13
 Iceland hCoV-19/Iceland/489/2020
 C241T C3037T A10323G C14408T A20268G A23403G

EPI_ISL_424512
 2020-03-20 2020-04-13
 Iceland hCoV-19/Iceland/490/2020
 C241T C3037T A10323G C14408T A20268G A23403G

EPI_ISL_424514
 2020-03-20 2020-04-13
 Iceland hCoV-19/Iceland/492/2020
 A1321C G11083T C14805T T17247C G26144T

EPI_ISL_424515
 2020-03-20 2020-04-13
 Iceland hCoV-19/Iceland/493/2020
 C241T C3037T A10323G C14408T A20268G A23403G

EPI_ISL_424516
 2020-03-20 2020-04-13
 Iceland hCoV-19/Iceland/494/2020
 C241T C3037T A10323G C14408T A20268G A23403G

EPI_ISL_424529
 2020-03-20 2020-04-13
 Iceland hCoV-19/Iceland/507/2020
 C241T C3037T A11839G C14408T G16377T T19839C A23403G G23856A GGG28881AAC

EPI_ISL_424530
 2020-03-20 2020-04-13
 Iceland hCoV-19/Iceland/508/2020
 C241T C3037T C3373A C11195T C14408T A23403G GGG28881AAC

EPI_ISL_424531
 2020-03-20 2020-04-13
 Iceland hCoV-19/Iceland/509/2020
 C241T C3037T C3373A C11195T C14408T A23403G GGG28881AAC

EPI_ISL_424532
 2020-03-20 2020-04-13
 Iceland hCoV-19/Iceland/510/2020
 C241T C1059T C1302T C2939T C3037T T11191G C14408T A23403G G25563T

EPI_ISL_424533
 2020-03-20 2020-04-13
 Iceland hCoV-19/Iceland/511/2020
 A1321C G11083T C14805T T17247C G26144T

EPI_ISL_425055
 2020-03-20 2020-04-14
 Belgium hCoV-19/Belgium/UGent-13/2020
 C241T C3037T G4255T C14408T A23403G A26530G

EPI_ISL_425131 MT582453
 2020-03-20 2020-04-14
 Germany SARS-CoV-2/human/DEU/NRW-47/2020
 C241T C1059T C3037T C14408T G21372K A23403G C23683Y G25563T G29648T

EPI_ISL_425203
 2020-03-20 2020-04-14
 Spain hCoV-19/Spain/Valencia79/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1519T T1671C C3037T C7834T C14408T C17639T C20259T A20268G A23403G C28638T G29009T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425205
 2020-03-20 2020-04-14
 Spain hCoV-19/Spain/Valencia81/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C14408T C21855T A23403G GGG28881AAC C29585T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425283
 2020-03-20 2020-04-14
 United Kingdom hCoV-19/England/CAMB-74386/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_425286
 2020-03-20 2020-04-14
 United Kingdom hCoV-19/England/CAMB-743E0/2020
 C241T C3037T C13730T C14408T A23403G G25429T

EPI_ISL_425287
 2020-03-20 2020-04-14
 United Kingdom hCoV-19/England/CAMB-743FF/2020
 A187G C241T C3037T C14408T A23403G

EPI_ISL_425288
 2020-03-20 2020-04-14
 United Kingdom hCoV-19/England/CAMB-7440B/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_425290
 2020-03-20 2020-04-14
 United Kingdom hCoV-19/England/CAMB-74438/2020
 G11083T C14805T T17247C G26144T

EPI_ISL_425294
 2020-03-20 2020-04-14
 United Kingdom hCoV-19/England/CAMB-74483/2020
 G1068A G11083T C12513T C14805T T17247C G26144T

EPI_ISL_425296
 2020-03-20 2020-04-14
 United Kingdom hCoV-19/England/CAMB-744A1/2020
 A2480G C2558T G11083T C14805T G26144T C28507T

EPI_ISL_425298
 2020-03-20 2020-04-14
 United Kingdom hCoV-19/England/CAMB-744CF/2020
 A2480G C2558T G11083T C14805T G26144T C28005T

EPI_ISL_425318
 2020-03-20 2020-04-14
 United Kingdom hCoV-19/England/CAMB-74641/2020
 C241T C3037T C14408T A23403G C25350T

EPI_ISL_425513
 2020-03-20 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10E21A/2020
 C241T C3037T A7877G T11798C C14408T C16289T A23403G G25429T

EPI_ISL_425514
 2020-03-20 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10E229/2020
 C241T C3037T A7877G T11798C C14408T C16289T A23403G G25429T

EPI_ISL_425515
 2020-03-20 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10E238/2020
 C241T C3037T A7877G T11798C C14408T C16289T A23403G G25429T

EPI_ISL_425517
 2020-03-20 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10E256/2020
 ATG1605- A7824G C20270T

EPI_ISL_425518
 2020-03-20 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10E265/2020
 C241T A749T G2527T C3037T A7877G T11798C C14408T C16289T A23403G G25429T

EPI_ISL_425519
 2020-03-20 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10E283/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T

EPI_ISL_425522
 2020-03-20 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10E2B0/2020
 C241T C3037T A7877G T11798C C14408T C16289T A23403G G25429T

EPI_ISL_425754
 2020-03-20 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR264/2020
 A7990C G11083T C14805T T17247C G26144T

EPI_ISL_425864
 2020-03-20 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB065/2020
 C241T C3037T C14408T A20268G A23403G

EPI_ISL_425867
 2020-03-20 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB068/2020
 A1691G G11083T C14805T T17247C G26144T

EPI_ISL_425870
 2020-03-20 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB073/2020
 C241T C3037T C3543T C14408T C16289T A23403G G25429T

EPI_ISL_425872
 2020-03-20 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB075/2020
 C6781T

EPI_ISL_425873
 2020-03-20 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB081/2020
 C241T C3037T C3792T C14408T C19484T A23403G

EPI_ISL_425887
 2020-03-20 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB097/2020
 G1440A G2891A

EPI_ISL_425888
 2020-03-20 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB098/2020
 C241T C3037T T3100G C14408T C17939T A23403G C23731T G25947T GGG28881AAC

EPI_ISL_425889
 2020-03-20 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB099/2020
 C241T C3037T T3100G C14408T C17939T A23403G C23731T G25947T GGG28881AAC

EPI_ISL_426320
 2020-03-20 2020-04-15
 United States hCoV-19/USA/NY-Wadsworth-25860-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T C18877T A20481G A23403G G24357A G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426448
 2020-03-20 2020-04-16
 United States hCoV-19/USA/WA_0457/2020
 C8782T T11320C C17747T A17858G C18060T G27604A T28144C C28826T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426453
 2020-03-20 2020-04-16
 United States hCoV-19/USA/WA_0797/2020
 C8782T T11320C C17747T A17858G C18060T C27416T T28144C C28657T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426520
 2020-03-20 2020-04-17
 United States hCoV-19/USA/AZ-TG269027/2020
 C241T C1059T C3037T C3411T C8293T C14408T A23403G G25563T C27964T A29006G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426522
 2020-03-20 2020-04-17
 United States hCoV-19/USA/AZ-TG269290/2020
 C241T C1059T C3037T C3411T C8293T C14408T A23403G G25563T C27964T A29006G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426523
 2020-03-20 2020-04-17
 United States hCoV-19/USA/AZ-TG269358/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426524
 2020-03-20 2020-04-17
 United States hCoV-19/USA/AZ-TG269439/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426542
 2020-03-20 2020-04-17
 United States hCoV-19/USA/AZ-TG271878/2020
 C241T C619T C1059T C3037T C14408T A14912G A22776T CA22802GC A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426544
 2020-03-20 2020-04-17
 United States hCoV-19/USA/AZ-TG271882/2020
 C241T C3037T C9534A C14408T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426644 MT451226
 2020-03-20 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC335/2020
 C8782T C17747T A17858G C18060T A24694T T28144C

EPI_ISL_426645 MT451227
 2020-03-20 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC336/2020
 C8782T C17747T A17858G C18060T A24694T T28144C

EPI_ISL_426646 MT451228
 2020-03-20 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC337/2020
 C241T C3037T C14408T A23403G C29739T

EPI_ISL_426647 MT451229
 2020-03-20 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC338/2020
 ATTAAAGGTT1- T1570C C8782T T9477A A10323G C14805T G25979T T28144C C28657T C28863T G29705T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_426648 MT451230
 2020-03-20 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC339/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G3955T T11638C C14408T A23403G GGG28881AAC C29708T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_426649 MT451231
 2020-03-20 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC340/2020
 ATTAAAGGTT1- C241T C3037T C7011T C14408T C16289T G17058A G19072T A23403G G25429T C25624T AA29902-

EPI_ISL_426650 MT451232
 2020-03-20 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC341/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T C14408T A20268G A23403G A24121G C28854T

EPI_ISL_426651 MT451233
 2020-03-20 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC342/2020
 ATTA1- C3096T G11083T G13627T C14805T C15540T G26144T A28338G G29212T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_426653 MT451235
 2020-03-20 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC344/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C3096T G11083T G13627T C14805T C15540T G26144T A28338G G29212T TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_426654 MT451236
 2020-03-20 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC345/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T G3248A C14408T A18710G A23403G G25563T

EPI_ISL_426655 MT451237
 2020-03-20 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC346/2020
 ATTA1- C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_426656 MT451238
 2020-03-20 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC347/2020
 AT1- C241T C1059T G2945A C3037T C11916T C14408T A23403G G25563T G26466A

EPI_ISL_426657 MT451239
 2020-03-20 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC348/2020
 ATTA1- C241T C1059T C3037T C3130T C7843T C14408T T22939C A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_426658 MT451241
 2020-03-20 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC350/2020
 ATTA1- T490A C3177T C8782T T18736C G19684T C24034T T26729C C27635T G28077C T28144C C29085T A29700G

EPI_ISL_426659 MT451242
 2020-03-20 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC351/2020
 AT1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_427273
 2020-03-20 2020-04-17
 United States hCoV-19/USA/MN-MDH-117/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A20755M A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_427274
 2020-03-20 2020-04-17
 United States hCoV-19/USA/MN-MDH-118/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10401T C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_427275
 2020-03-20 2020-04-17
 United States hCoV-19/USA/MN-MDH-119/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C11224T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_427276
 2020-03-20 2020-04-17
 United States hCoV-19/USA/MN-MDH-120/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_427277
 2020-03-20 2020-04-17
 United States hCoV-19/USA/MN-MDH-121/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_427302
 2020-03-20 2020-04-18
 Brazil hCoV-19/Brazil/RJ-763/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T A23403G T27299C GGG28881AAC T29148C AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782C

EPI_ISL_427307
 2020-03-20 2020-04-18
 Russia hCoV-19/Russia/StPetersburg-RII4144S/2020
 C241T C3037T C14408T A20268G A23403G A28692C

EPI_ISL_428201
 2020-03-20 2020-04-19
 Sweden hCoV-19/Sweden/RV-FOI-6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14195A C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428269
 2020-03-20 2020-04-20
 United States hCoV-19/USA/WI-UW-173/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428270
 2020-03-20 2020-04-20
 United States hCoV-19/USA/WI-UW-174/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428271
 2020-03-20 2020-04-20
 United States hCoV-19/USA/WI-UW-175/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G17658T G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428272
 2020-03-20 2020-04-20
 United States hCoV-19/USA/WI-UW-176/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C9474T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428273
 2020-03-20 2020-04-20
 United States hCoV-19/USA/WI-UW-177/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T2116A G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428274
 2020-03-20 2020-04-20
 United States hCoV-19/USA/WI-UW-178/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C9520T G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428348
 2020-03-20 2020-04-20
 France hCoV-19/France/GE3372/2020
 C241T C3037T G7065A C14408T C15324T C16428T A23403G AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_428874
 2020-03-20 2020-04-22
 Russia hCoV-19/Russia/Yakutia-73709/2020
 C241T G1355T C3037T G10097A C14408T G17964T A23403G C23731T GGG28881AAC

EPI_ISL_428883
 2020-03-20 2020-04-22
 Russia hCoV-19/Russia/StPetersburg-73603/2020
 T514C ATG1605- C17410T

EPI_ISL_428885
 2020-03-20 2020-04-22
 Russia hCoV-19/Russia/Samara-73406/2020
 C241T C3037T C14408T A23403G

EPI_ISL_428886
 2020-03-20 2020-04-22
 Russia hCoV-19/Russia/Samara-73403/2020
 C241T C313T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_428888
 2020-03-20 2020-04-22
 Russia hCoV-19/Russia/Yakutia-73703/2020
 C241T C3037T C14408T A23403G G28727T GGG28881AAC

EPI_ISL_429127
 2020-03-20 2020-04-23
 Sweden hCoV-19/Sweden/20-08332/2020
 C241T C1059T C3037T C14408T A23403G C23575T G24368T G25563T

EPI_ISL_429228
 2020-03-20 2020-04-23
 Italy hCoV-19/Italy/TE5674/2020
 C15T C241T AC538WM C3037T T7396W C14408T A23403G GGG28881AAC AAAA29900-

EPI_ISL_429695
 2020-03-20 2020-04-24
 Brazil hCoV-19/Brazil/CV42/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACG1- C241T C3037T T5658A C14408T A23403G GCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29737-

EPI_ISL_429735
 2020-03-20 2020-04-24
 Luxembourg hCoV-19/Luxembourg/LNS5358505/2020
 C241T C3037T C14408T A23403G C26256T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_430217 MT632505
 2020-03-20 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S179/2020
 C241T C379A C1059T T2244C C3037T C14408T A23403G G25563T

EPI_ISL_430220 MT632590
 2020-03-20 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S182/2020
 C241T C379A C1059T T2244C C3037T C14408T G25563T

EPI_ISL_430224 MT632512
 2020-03-20 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S186/2020
 C241T C379A C1059T T2244C C3037T C14408T A23403G G25563T

EPI_ISL_430225 MT632546
 2020-03-20 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S187/2020
 C8782T T11320C G12070T C17747T A17858G C18060T T28144C

EPI_ISL_430226 MT632508
 2020-03-20 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S188/2020
 C241T C379A C1059T T2244C C3037T C14408T A23403G G25563T

EPI_ISL_430227 MT632520
 2020-03-20 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S189/2020
 C241T C379A C1059T T2244C C3037T C8616T C14408T A23403G G25563T

EPI_ISL_430229 MT632493
 2020-03-20 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S191/2020
 C241T C379A C1059T T2244C C3037T C3177T C14408T A23403G G25563T

EPI_ISL_430230 MT632540
 2020-03-20 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S192/2020
 C241T C379A C1059T T2244C C3037T C14408T A23403G G25563T

EPI_ISL_430232 MT632514
 2020-03-20 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S194/2020
 C8782T T11320C C17747T A17858G C18060T T28144C C28826T

EPI_ISL_430233 MT632519
 2020-03-20 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S195/2020
 C241T C379A C1059T T2244C C3037T C14408T A23403G G25563T

EPI_ISL_430235 MT632498
 2020-03-20 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S197/2020
 C241T C379A C1059T T2244C C3037T C14408T G18255T A23403G G25563T

EPI_ISL_430236 MT632511
 2020-03-20 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S198/2020
 C241T C379A C1059T T2244C C3037T C14408T A23403G G25563T

EPI_ISL_430237 MT632523
 2020-03-20 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S199/2020
 C241T C379A C1059T T2244C C3037T C14408T A23403G G25563T

EPI_ISL_430238 MT632583
 2020-03-20 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S200/2020
 G1401A C8782T C17747T A17858G C18060T T28144C

EPI_ISL_430239 MT632563
 2020-03-20 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S201/2020
 C8782T T11320C C17747T A17858G C18060T T28144C C28826T

EPI_ISL_430240 MT632517
 2020-03-20 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S202/2020
 C241T C379A C1059T T2244C C3037T C14408T A23403G G25563T

EPI_ISL_430241 MT632525
 2020-03-20 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S203/2020
 C241T C379A C1059T T2244C C3037T C14408T A23403G G25563T C27513T

EPI_ISL_430243 MT632499
 2020-03-20 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S205/2020
 C241T C379A C1059T T2244C C3037T C3177T C14408T A23403G G25563T

EPI_ISL_430244 MT632527
 2020-03-20 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S206/2020
 C241T C379A C1059T T2244C C3037T C14408T A23403G G25563T

EPI_ISL_430245 MT632599
 2020-03-20 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S207/2020
 C8782T T11320C C17747T A17858G C18060T T28144C

EPI_ISL_430249 MT632577
 2020-03-20 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S211/2020
 C8782T T11320C C17747T A17858G C18060T T28144C

EPI_ISL_430252 MT632509
 2020-03-20 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S214/2020
 C241T C1059T C3037T C14408T A23403G G25563T C25916T G29553A

EPI_ISL_430253 MT632526
 2020-03-20 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S215/2020
 C8782T T11320C C17747T A17858G C18060T C27416T T28144C C28657T

EPI_ISL_430254 MT632553
 2020-03-20 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S216/2020
 C241T C379A C1059T T2244C C3037T C14408T A23403G G25563T

EPI_ISL_430255 MT632529
 2020-03-20 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S217/2020
 C241T C379A C1059T T2244C C3037T C14408T A23403G G25563T

EPI_ISL_430257 MT632601
 2020-03-20 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S219/2020
 C8782T C17747T A17858G C18060T A27525G T28144C

EPI_ISL_430258 MT632516
 2020-03-20 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S220/2020
 C241T C379A C1059T T2244C C3037T C14408T A23403G G25563T

EPI_ISL_430261 MT632507
 2020-03-20 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S223/2020
 C241T C379A C1059T T2244C C3037T C14408T A23403G G25563T

EPI_ISL_430263 MT632521
 2020-03-20 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S225/2020
 C241T C379A C1059T T2244C C3037T C14408T A23403G G25563T

EPI_ISL_430265 MT632534
 2020-03-20 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S227/2020
 C8782T T11320C C17747T A17858G C18060T G27604A T28144C C28826T

EPI_ISL_430266 MT632513
 2020-03-20 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S228/2020
 C241T C379A C1059T T2244C C3037T C14408T A23403G G25563T

EPI_ISL_430269 MT632503
 2020-03-20 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S231/2020
 C241T C379A C1059T T2244C C3037T C8160T C14408T A23403G G25563T

EPI_ISL_431117
 2020-03-20 2020-04-29
 India hCoV-19/India/GMC-TC469/2020
 C241T C3037T C14408T A23403G GGG28881AAC C29870M

EPI_ISL_433277
 2020-03-20 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR261/2020
 T490A C3177T C8782T T18736C G19684T C24034T T26729C C26781T C27635T G28077C T28144C A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_433278
 2020-03-20 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR273/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16289T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_433279
 2020-03-20 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR278/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G11083T C14805T A17656G G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_433283
 2020-03-20 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR309/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C12710T G21624A C28854T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_434458
 2020-03-20 2020-04-29
 Greece hCoV-19/Greece/37/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGG28881AAC TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_434469
 2020-03-20 2020-04-29
 Greece hCoV-19/Greece/154/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGG28881AAC C28887T TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_434538
 2020-03-20 2020-04-29
 Costa Rica hCoV-19/Costa Rica/0005/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

EPI_ISL_434650
 2020-03-20 2020-04-30
 Sweden hCoV-19/Sweden/20-06071/2020
 C241T G2357A C3037T C14408T A20268G A23403G

EPI_ISL_434652
 2020-03-20 2020-04-30
 Sweden hCoV-19/Sweden/20-06308/2020
 C241T C1059T C3037T C14408T A23403G G23593C G24368T G25563T

EPI_ISL_434685
 2020-03-20 2020-05-01
 United States hCoV-19/USA/MD-HP00024/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_434686
 2020-03-20 2020-05-01
 United States hCoV-19/USA/MD-HP00030/2020
 T490A C3177T C6040T C8782T G12478A T18736C C24034T T26729C G28077C T28144C C28896G A29700G

EPI_ISL_434807
 2020-03-20 2020-05-01
 United States hCoV-19/USA/TX-HMH102/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T

EPI_ISL_434811
 2020-03-20 2020-05-01
 United States hCoV-19/USA/TX-HMH108/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_434812
 2020-03-20 2020-05-01
 United States hCoV-19/USA/TX-HMH110/2020
 T490A C3177T C6040T C8782T C8950T G12478A T18736C C24034T T26729C G28077C T28144C C28896G C29451T A29700G

EPI_ISL_434821
 2020-03-20 2020-05-01
 United States hCoV-19/USA/TX-HMH121/2020
 C241T C1059T C3037T G4180T C14408T C17518T A23403G G25563T

EPI_ISL_434822
 2020-03-20 2020-05-01
 United States hCoV-19/USA/TX-HMH122/2020
 C241T C3037T C14408T A23403G

EPI_ISL_434824
 2020-03-20 2020-05-01
 United States hCoV-19/USA/TX-HMH124/2020
 C241T C379A C1059T C3037T A10323G C14408T A23403G G25563T

EPI_ISL_434825
 2020-03-20 2020-05-01
 United States hCoV-19/USA/TX-HMH125/2020
 T490A C3177T C6040T C8782T C8950T G12478A T18736C C24034T T26729C G28077C T28144C C28896G C29451T A29700G

EPI_ISL_434827
 2020-03-20 2020-05-01
 United States hCoV-19/USA/TX-HMH127/2020
 C302T T490A C3177T C6040T C8782T C8950T G12478A T18736C C24034T T26729C G28077C T28144C C28657T C28896G C29451T A29700G

EPI_ISL_435403
 2020-03-20 2020-05-04
 Hungary hCoV-19/Hungary/SRC-00066/2020
 C241T C3037T C14408T A20268G A23403G

EPI_ISL_435404
 2020-03-20 2020-05-04
 Hungary hCoV-19/Hungary/SRC-00067/2020
 C241T C1059T C3037T C14408T C21697A A23403G G25563T

EPI_ISL_435419
 2020-03-20 2020-05-04
 Hungary hCoV-19/Hungary/SRC-00055/2020
 C241T C313T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_436040
 2020-03-20 2020-05-05
 United States hCoV-19/USA/DC-CDC-9096/2020
 C241T C1059T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_436265
 2020-03-20 2020-05-06
 Spain hCoV-19/Spain/Valencia170/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23403G G28209T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_436267
 2020-03-20 2020-05-06
 Spain hCoV-19/Spain/Valencia172/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C17639T A20268G A23403G C28638T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_436268
 2020-03-20 2020-05-06
 Spain hCoV-19/Spain/Valencia173/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A20268G A23403G TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_436269
 2020-03-20 2020-05-06
 Spain hCoV-19/Spain/Valencia174/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T T17126C A20268G A23403G G28048T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_436719
 2020-03-20 2020-05-07
 Italy hCoV-19/Italy/TE5541/2020
 A39G T42C CG44AT T54Y C241T A538W C3037T A6596R T7396W TG8827WK C14408T G16117K G17427K A23403G G25720K GGG28881AAC AA29902-

EPI_ISL_436720
 2020-03-20 2020-05-07
 Italy hCoV-19/Italy/TE5543/2020
 ATTA1GWKM C48M A55R C241T C3037T G8828K C14408T A23403G GGG28881AAC

EPI_ISL_436721
 2020-03-20 2020-05-07
 Italy hCoV-19/Italy/TE5545/2020
 C241T A538W C697T C3037T T6451Y T7396W TG8827WK T9643Y C14408T A23403G G25186K A25809W G26284K GGG28881AAC A29903-

EPI_ISL_436722
 2020-03-20 2020-05-07
 Italy hCoV-19/Italy/TE5547/2020
 T47K T54Y C241T A538W C697T C3037T C14408T A23403G A25449W GGG28881AAC

EPI_ISL_436723
 2020-03-20 2020-05-07
 Italy hCoV-19/Italy/TE5687/2020
 T51C T54C C241T AC538WM A544R C835Y C3037T G7360K T7396W TG8827WK C14408T G16117K A23403G G24445R G25720K GGG28881RRS AA29902-

EPI_ISL_436829 MT439263
 2020-03-20 2020-05-06
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20137/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_437092
 2020-03-20 2020-05-08
 Latvia hCoV-19/Latvia/013/2020
 C241T C3037T T9727C C14408T C19488T A23403G GGG28881AAC

EPI_ISL_437140 MT412178
 2020-03-20 2020-04-29
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20053/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C1059T C1380T C3037T C14408T T18384C T21994Y A23403G G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_437256
 2020-03-20 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0057/2020
 C241T C3037T C14408T G19825T A23403G GGG28881AAC

EPI_ISL_437258
 2020-03-20 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0059/2020
 A187G C241T C3037T C14408T A23403G

EPI_ISL_437555
 2020-03-20 2020-05-11
 United States hCoV-19/USA/CA-SR0257/2020
 C241T C1059T C1887T C3037T C14408T A23403G G25563T C29870A

EPI_ISL_437599
 2020-03-20 2020-05-11
 United States hCoV-19/USA/CA-SR0178/2020
 C241T C1059T C3037T C6255T C14408T A23403G G23426T G25563T

EPI_ISL_437602 MT447176
 2020-03-20 2020-05-01
 Thailand SARS-CoV-2/human/THA/SI206917-NT/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- A895G C2942T G4390T C8782T C9598T G20134T G24047A G27877T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_437874 MT459833
 2020-03-20 2020-05-11
 Greece SARS-CoV-2/human/GRC/43_35679/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T C14786T T18126C A23403G T26359A GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_437959
 2020-03-20 2020-05-12
 Austria hCoV-19/Austria/CeMM0098/2020
 C241T C3037T C14408T T22521K A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_437960
 2020-03-20 2020-05-12
 Austria hCoV-19/Austria/CeMM0099/2020
 C241T C1059T C3037T C14408T G14653T T22521K A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_437961
 2020-03-20 2020-05-12
 Austria hCoV-19/Austria/CeMM0100/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_437962
 2020-03-20 2020-05-12
 Austria hCoV-19/Austria/CeMM0101/2020
 C241T C1059T C3037T T11177Y G11327K C14408T G14653T T22521K A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_438070
 2020-03-20 2020-05-12
 Austria hCoV-19/Austria/CeMM0240/2020
 C8782T T9530K T22521K C26088T T27801C T28144C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_438071
 2020-03-20 2020-05-12
 Austria hCoV-19/Austria/CeMM0241/2020
 C241T C3037T G12832A C14408T T22521K A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_438072
 2020-03-20 2020-05-12
 Austria hCoV-19/Austria/CeMM0242/2020
 C241T C3037T C14408T A20268G T22521K A23403G G29734C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_438073
 2020-03-20 2020-05-12
 Austria hCoV-19/Austria/CeMM0243/2020
 C241T C3037T C14408T A20268G T22521K A23403G G29734C AAAAAAAAAA29894-

EPI_ISL_438074
 2020-03-20 2020-05-12
 Austria hCoV-19/Austria/CeMM0244/2020
 C241T C3037T G12832A C14408T T22521K A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_438075
 2020-03-20 2020-05-12
 Austria hCoV-19/Austria/CeMM0245/2020
 C241T C3037T G12832A C14408T T22521K A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_438154
 2020-03-20 2020-05-12
 United States hCoV-19/USA/WA-S601/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_438237
 2020-03-20 2020-05-12
 United States hCoV-19/USA/DC-HP00080/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_439024
 2020-03-20 2020-05-12
 United Kingdom hCoV-19/Scotland/CVR306/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1455C C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_439052
 2020-03-20 2020-05-12
 United Kingdom hCoV-19/Scotland/CVR326/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_439057
 2020-03-20 2020-05-12
 United Kingdom hCoV-19/Scotland/CVR339/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C6696T C11001T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_439065
 2020-03-20 2020-05-12
 United Kingdom hCoV-19/Scotland/CVR357/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_440181
 2020-03-20 2020-05-12
 United Kingdom hCoV-19/England/CAMB-7341B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T C23707T T25202K G26144T C28093Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_441381
 2020-03-20 2020-05-12
 United Kingdom hCoV-19/Northern Ireland/NIRE-1020FE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23403G C25350T

EPI_ISL_441417
 2020-03-20 2020-05-12
 United Kingdom hCoV-19/Northern Ireland/NIRE-FB3D2/2020
 ATT1- ATG1605- C6696T C11001T C29870A

EPI_ISL_441418
 2020-03-20 2020-05-12
 United Kingdom hCoV-19/Northern Ireland/NIRE-FB3E1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- ATG1605- C6696T C11001T T22729C C25844T C29870A

EPI_ISL_441424
 2020-03-20 2020-05-12
 United Kingdom hCoV-19/Northern Ireland/NIRE-FB448/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C4095T C14408T A23403G G25593K GGG28881AAC C29870A

EPI_ISL_443218
 2020-03-20 2020-05-12
 Singapore hCoV-19/Singapore/126/2020
 C241T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_443219
 2020-03-20 2020-05-12
 Singapore hCoV-19/Singapore/127/2020
 C241T C3037T G8179T C14408T A23403G G26828K GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_443221
 2020-03-20 2020-05-12
 Singapore hCoV-19/Singapore/129/2020
 AAAAAAAAAAAA29892-

EPI_ISL_443222
 2020-03-20 2020-05-12
 Singapore hCoV-19/Singapore/130/2020
 A14172G C14636T G15672T AAAAAAAAAAAA29892-

EPI_ISL_443223
 2020-03-20 2020-05-12
 Singapore hCoV-19/Singapore/131/2020
 C241T C3037T C14408T A23403G G28307K GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_443224
 2020-03-20 2020-05-12
 Singapore hCoV-19/Singapore/132/2020
 A8379R C14636T AAAAAAAAAAAA29892-

EPI_ISL_443225
 2020-03-20 2020-05-12
 Singapore hCoV-19/Singapore/133/2020
 A5874G G16827R C20270T A29683T AAAAAAAAAAAA29892-

EPI_ISL_443248
 2020-03-20 2020-05-12
 Singapore hCoV-19/Singapore/156/2020
 C6310A C6312A G11083T C13730T C19524T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_443249
 2020-03-20 2020-05-12
 Singapore hCoV-19/Singapore/157/2020
 C241T C3037T A8771W T11638C C13887T C14408T A23403G GGG28881AAC G29425S GA29427KR AAAAAAAAAAAA29892-

EPI_ISL_443310
 2020-03-20 2020-05-12
 France hCoV-19/France/GE4420/2020
 C241T C3037T C14408T T14646C C15324T G16741T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_444277 MT479226
 2020-03-20 2020-05-13
 Taiwan SARS-CoV-2/human/TWN/CGMH-CGU-24/2020
 AT1- C241T C1314T C3037T G9601A C14408T A23403G G28703T GGG28881AAC C29857T A29903-

EPI_ISL_444278 MT479227
 2020-03-20 2020-05-13
 Taiwan SARS-CoV-2/human/TWN/CGMH-CGU-25/2020
 ATTA1- C241T C379A T577A C1059T C3037T T12511C C14408T A23403G G25563T

EPI_ISL_444591
 2020-03-20 2020-05-14
 United States hCoV-19/USA/IL-NM0106/2020
 C241T AAGTCATTT686- T3011C C3037T C8092T C14408T A23403G C27600T

EPI_ISL_444592
 2020-03-20 2020-05-14
 United States hCoV-19/USA/IL-NM0107/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_444593
 2020-03-20 2020-05-14
 United States hCoV-19/USA/IL-NM0108/2020
 C8782T G16396T C17747T A17858G C18060T C19017T T28144C

EPI_ISL_444594
 2020-03-20 2020-05-14
 United States hCoV-19/USA/IL-NM0109/2020
 T490A C3177T C8782T T18736C G19684T C24034T T26729C C27635T G28077C T28144C A29700G

EPI_ISL_444595
 2020-03-20 2020-05-14
 United States hCoV-19/USA/IL-NM0111/2020
 C241T C3037T A5620G C14408T A23403G

EPI_ISL_444596
 2020-03-20 2020-05-14
 United States hCoV-19/USA/IL-NM0112/2020
 T490A C3177T C8782T C8917T T18736C G19684T C24034T T26729C C27635T G28077C T28144C A29700G

EPI_ISL_444606
 2020-03-20 2020-05-14
 United States hCoV-19/USA/IL-NM0124/2020
 C8782T G16381A T17877C C20316T G25500T T28144C G28878A G29742A

EPI_ISL_444894
 2020-03-20 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-765/2020
 C241T C1059T C3037T T8788C C14408T G21624T A23403G G25563T G26951A C29272T

EPI_ISL_444895
 2020-03-20 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-767/2020
 C241T C1059T C3037T A4548G C6896T T8788C C14408T A23403G G25563T G26951A

EPI_ISL_444978
 2020-03-20 2020-05-14
 Spain hCoV-19/Spain/Barcelona_VH4141/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- C241T G922A C3037T C14408T G18462T A20268G A23403G

EPI_ISL_444979
 2020-03-20 2020-05-14
 Spain hCoV-19/Spain/Barcelona_VH4488/2020
 C241T C3037T C14408T A20268G A23403G T25485C C28948T

EPI_ISL_445000
 2020-03-20 2020-05-14
 United States hCoV-19/Guam/GU_NHG_03/2020
 ATTAAAGGTTTAT1- C6312A G11083T C13730T C23929T C28311T G29162T

EPI_ISL_445078
 2020-03-20 2020-05-14
 United States hCoV-19/USA/TX_GCID_192000021/2020
 ATTAAAGGTT1- C241T C1059T C3037T C14408T G17808T A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_445288
 2020-03-20 2020-05-15
 Chile hCoV-19/Chile/Punta_Arenas_7/2020
 ATTAA1- C241T C1059T C3037T C14408T A19033G A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_445289
 2020-03-20 2020-05-15
 Chile hCoV-19/Chile/Punta_Arenas_8/2020
 AT1-C C241T C3037T C8389T C14408T A23403G G25563T TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_445293
 2020-03-20 2020-05-15
 Chile hCoV-19/Chile/Punta_Arenas_12/2020
 A1- T3A A5T C241T C3037T C14408T A23403G C25350T G27762A AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_445301
 2020-03-20 2020-05-15
 Chile hCoV-19/Chile/Punta_Arenas_16/2020
 A1T -6T C241T C3037T C8389T A12506R C14408T A23403G G25563T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_445363
 2020-03-20 2020-05-15
 Chile hCoV-19/Chile/Santiago_67/2020
 AT1GGTTTATGATCCTTTGCAACCTGAATTAGACTCATTCAAGGAGGAGTTAGATAAA A6G G8T T13C C241T G1319A C3037T C8389T C14408T A23403G G25563T G28122T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861T

EPI_ISL_445365
 2020-03-20 2020-05-15
 Chile hCoV-19/Chile/Santiago_69/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T C14408T A23403G G25563T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_447091 MT506539
 2020-03-20 2020-05-16
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20294/2020
 C241T C1059T C3037T C14408T A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_447094 MT506540
 2020-03-20 2020-05-16
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20297/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_447256
 2020-03-20 2020-05-17
 Taiwan hCoV-19/Taiwan/TSGH-30/2020
 C3037T GT4545TA T4555A T4567A A4580C A4595C T4608A C11916T G16718T T21524G A23403G C24358A T24364A T24376A T24380A C24442A

EPI_ISL_447591
 2020-03-20 2020-05-18
 Taiwan hCoV-19/Taiwan/TSGH-32/2020
 C241T A1072C T4517A C5365G A10176C T10203A A11154C C11300A C12754T C13957G T15492A G17116T G18907T G19509A G23149C A23403G T24286G G24410C GGG28881AAC

EPI_ISL_447837
 2020-03-20 2020-05-18
 Norway hCoV-19/Norway/2200/2020
 ATTAAAGGTTT1- C241T C3037T C14408T A23403G A26530G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_450085
 2020-03-20 2020-05-19
 United States hCoV-19/USA/NY-PV09405/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C1059T C3037T G7560A C14408T C21221T A23403G G25563T CCACGCGGAGTACGATCGAGT29738- AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_450146
 2020-03-20 2020-05-20
 United States hCoV-19/USA/NY-PV09474/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T C3037T C14408T C18877T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450147
 2020-03-20 2020-05-20
 United States hCoV-19/USA/NY-PV09475/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G G25563T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_450148
 2020-03-20 2020-05-20
 United States hCoV-19/USA/NY-PV09476/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C3037T C14408T C18877T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450149
 2020-03-20 2020-05-20
 United States hCoV-19/USA/NY-PV09477/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C1059T C1917T C3037T C14408T A21188G A23403G G25563T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_450150
 2020-03-20 2020-05-20
 United States hCoV-19/USA/NY-PV09478/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C3037T G10265A C14408T A23403G GGG28881AAC AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450151
 2020-03-20 2020-05-20
 United States hCoV-19/USA/NY-PV09479/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C8782T C17747T A17858G C18060T A24694T T28144C AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450152
 2020-03-20 2020-05-20
 United States hCoV-19/USA/NY-PV09480/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTT1- C241T C1059T C3037T C6926T C11916T C14408T C18998T A23403G G25563T G29540A AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450153
 2020-03-20 2020-05-20
 United States hCoV-19/USA/NY-PV09481/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTT1- C241T C3037T T4579A C14408T G18898T A23403G GGG28881AAC AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450154
 2020-03-20 2020-05-20
 United States hCoV-19/USA/NY-PV09482/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_450155
 2020-03-20 2020-05-20
 United States hCoV-19/USA/NY-PV09483/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450156
 2020-03-20 2020-05-20
 United States hCoV-19/USA/NY-PV09484/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T C16260T A23403G G25563T C28821A CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_450157
 2020-03-20 2020-05-20
 United States hCoV-19/USA/NY-PV09485/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450158
 2020-03-20 2020-05-20
 United States hCoV-19/USA/NY-PV09486/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T C3037T C14408T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450159
 2020-03-20 2020-05-20
 United States hCoV-19/USA/NY-PV09487/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T C3037T C14408T C18877T C21811T A23403G G25563T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_450160
 2020-03-20 2020-05-20
 United States hCoV-19/USA/NY-PV09488/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATC1- C241T C619T C1059T C3037T G6662A T13210C C14408T A14912G A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450161
 2020-03-20 2020-05-20
 United States hCoV-19/USA/NY-PV09489/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C10851T C14408T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450162
 2020-03-20 2020-05-20
 United States hCoV-19/USA/NY-PV09490/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T T5920C C11916T C14408T A23403G A25102C G25563T G28376T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450163
 2020-03-20 2020-05-20
 United States hCoV-19/USA/NY-PV09491/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G C23415T G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450165
 2020-03-20 2020-05-20
 United States hCoV-19/USA/NY-PV09493/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T C21552T A23403G G25563T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_450167
 2020-03-20 2020-05-20
 United States hCoV-19/USA/NY-PV09495/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T C3037T C14408T T14988C A22019G A23403G GGG28881AAC AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450168
 2020-03-20 2020-05-20
 United States hCoV-19/USA/NY-PV09496/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T C3037T C14408T A23403G G25563T C26625T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450169
 2020-03-20 2020-05-20
 United States hCoV-19/USA/NY-PV09497/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450170
 2020-03-20 2020-05-20
 United States hCoV-19/USA/NY-PV09504/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G G25563T C28849T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450239
 2020-03-20 2020-05-20
 United States hCoV-19/USA/CA-UCSF-UC47/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C8318A C14408T A20268G A23403G C26111T C28854T TGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29840-

EPI_ISL_450240
 2020-03-20 2020-05-20
 United States hCoV-19/USA/CA-UCSF-UC48/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C1059T C3037T C11916T C14408T A23403G G25563T TGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29840-

EPI_ISL_450473 MT499199
 2020-03-20 2020-05-21
 United States SARS-CoV-2/human/USA/CA-CZB-1224/2020
 A1- C8782T C17747T A17858G C18060T T28144C

EPI_ISL_450723
 2020-03-20 2020-05-22
 Thailand hCoV-19/Thailand/Bangkok-CONI-0018/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A895G C2942T G4390T C8782T C9598T G20134T G24047A TTTC27694- G27877T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_450770
 2020-03-20 2020-05-22
 United States hCoV-19/USA/MN-MDH-305/2020
 ATTAAAGGTTTA1- C241T C1059T C3037T G10870T C14408T A23403G G25563T A25859G CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_450807
 2020-03-20 2020-05-22
 Sweden hCoV-19/Sweden/20-06097/2020
 C241T C3037T C9131T C12213T C14408T A23403G GGG28881AAC

EPI_ISL_450874
 2020-03-20 2020-05-22
 Brazil hCoV-19/Brazil/PA161548-IEC/2020
 C241T C3037T C14408T A23403G T27299C GGG28881AAC T29148C

EPI_ISL_451080
 2020-03-20 2020-05-23
 Australia hCoV-19/Australia/SAP035/2020
 C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T

EPI_ISL_451404
 2020-03-20 2020-05-25
 United States hCoV-19/USA/NY-NYUMC689/2020
 C241T C1059T C3037T C14408T C16616T A23403G G25563T

EPI_ISL_451424
 2020-03-20 2020-05-25
 United States hCoV-19/USA/NY-NYUMC709/2020
 C241T C1059T C3037T G12769T C14408T A23403G G25563T G26452T

EPI_ISL_451427
 2020-03-20 2020-05-25
 United States hCoV-19/USA/NY-NYUMC712/2020
 C344T A2480G C2558T G11083T A11700G C14805T C17010A C21575T G26144T A27363G

EPI_ISL_451439
 2020-03-20 2020-05-25
 United States hCoV-19/USA/NY-NYUMC724/2020
 C241T C1059T C3037T C4113T C11916T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_451440
 2020-03-20 2020-05-25
 United States hCoV-19/USA/NY-NYUMC725/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_451444
 2020-03-20 2020-05-25
 United States hCoV-19/USA/NY-NYUMC729/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_451456
 2020-03-20 2020-05-25
 United States hCoV-19/USA/NY-NYUMC741/2020
 C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_451459
 2020-03-20 2020-05-25
 United States hCoV-19/USA/NY-NYUMC744/2020
 C241T C1059T C3037T C4246T C14408T C21005T C21549T A23403G G25563T

EPI_ISL_451462
 2020-03-20 2020-05-25
 United States hCoV-19/USA/NY-NYUMC747/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_451463
 2020-03-20 2020-05-25
 United States hCoV-19/USA/NY-NYUMC748/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_451467
 2020-03-20 2020-05-25
 United States hCoV-19/USA/NY-NYUMC753/2020
 C241T C1059T C3037T C12400T C14408T A23403G G25563T G28812T

EPI_ISL_451468
 2020-03-20 2020-05-25
 United States hCoV-19/USA/NY-NYUMC754/2020
 T490A C3177T C8782T A16812G T18736C G19684T C24034T T26729C C27635T G28077C T28144C A29700G

EPI_ISL_451470
 2020-03-20 2020-05-25
 United States hCoV-19/USA/NY-NYUMC756/2020
 C241T C3037T C14408T C18877T A23403G G25563T

EPI_ISL_451471
 2020-03-20 2020-05-25
 United States hCoV-19/USA/NY-NYUMC757/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_451472
 2020-03-20 2020-05-25
 United States hCoV-19/USA/NY-NYUMC758/2020
 C241T C1059T C3037T C11300T C14408T A23403G G25563T C28819T C28849T

EPI_ISL_451476
 2020-03-20 2020-05-25
 United States hCoV-19/USA/NY-NYUMC762/2020
 C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_451477
 2020-03-20 2020-05-25
 United States hCoV-19/USA/NY-NYUMC763/2020
 C241T C1059T C3037T C11916T C14408T C14937A C18998T A23403G G25563T G29540A

EPI_ISL_451478
 2020-03-20 2020-05-25
 United States hCoV-19/USA/NY-NYUMC764/2020
 C241T C1059T C3037T C14408T A23403G C25469T G25563T T25743C

EPI_ISL_451665
 2020-03-20 2020-05-25
 United States hCoV-19/USA/NY-NYUMC751/2020
 C8078T G11083T C14805T T17247C G26144T T28251G CA28253TC

EPI_ISL_451962
 2020-03-20 2020-05-26
 Italy hCoV-19/Italy/IZSPB_1259/2020
 A1GGCGGGA C241T C3037T C14408T A23403G G28580T AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_452336
 2020-03-20 2020-05-27
 China hCoV-19/Beijing/DT-travelUK04/2020
 T13A G1397A A7837T T8022G C9430T G15327T C18029T T19299G G24812T A28305C T28688C G29742T

EPI_ISL_452350
 2020-03-20 2020-05-27
 China hCoV-19/Beijing/DT-travelHU03/2020
 C241T G2229A C3037T T8022G C14408T T20891G A23403G A24950T GGG28881AAC

EPI_ISL_453821
 2020-03-20 2020-05-28
 Portugal hCoV-19/Portugal/PT0105/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C14408T C21242T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454092
 2020-03-20 2020-05-28
 Portugal hCoV-19/Portugal/PT0376/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G C26408T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454093
 2020-03-20 2020-05-28
 Portugal hCoV-19/Portugal/PT0377/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C11956T C14408T G16558T A23403G C23603T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454094
 2020-03-20 2020-05-28
 Portugal hCoV-19/Portugal/PT0378/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC G29315A TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454095
 2020-03-20 2020-05-28
 Portugal hCoV-19/Portugal/PT0379/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3140T C14408T G18816T C20148T A23403G G24077T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454098
 2020-03-20 2020-05-28
 Portugal hCoV-19/Portugal/PT0382/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3140T C14408T A23403G G23954A G24077T C29555T GGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29736-

EPI_ISL_454100
 2020-03-20 2020-05-28
 Portugal hCoV-19/Portugal/PT0384/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- C241T C3037T C14408T A20268G A23403G CGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29754-

EPI_ISL_454103
 2020-03-20 2020-05-28
 Portugal hCoV-19/Portugal/PT0387/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G C26408T GGG28881AAC ATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29677-

EPI_ISL_454129
 2020-03-20 2020-05-28
 Portugal hCoV-19/Portugal/PT0405/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454159
 2020-03-20 2020-05-28
 Portugal hCoV-19/Portugal/PT0435/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T G5194T T11698C C14408T A20268G A23403G C25672T C26882T G26951T C28854T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454236
 2020-03-20 2020-05-28
 Portugal hCoV-19/Portugal/PT0512/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- A2480G C2558T G11083T C11139T C12784T C14805T G26144T C29409T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454237
 2020-03-20 2020-05-28
 Portugal hCoV-19/Portugal/PT0513/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C12439T C14408T A19291G A23403G G26792T C26892T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454239
 2020-03-20 2020-05-28
 Portugal hCoV-19/Portugal/PT0515/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- TGGTCATGTTATGGT508- A2480G C2558T G11083T C14805T G22014T G26144T C27600T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454240
 2020-03-20 2020-05-28
 Portugal hCoV-19/Portugal/PT0516/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- A2480G C2558T G11083T C14805T G26144T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454463
 2020-03-20 2020-05-28
 Sweden hCoV-19/Sweden/20-08091/2020
 C241T C3037T G4255T C14408T T16456G C20051T A23403G A26530G

EPI_ISL_454588
 2020-03-20 2020-05-28
 Croatia hCoV-19/Croatia/1761_Dubrovnik/2020
 ATTAAA1- G1440A G2891A C14408T A23403G G25593C C26456Y TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_454789
 2020-03-20 2020-05-29
 Netherlands hCoV-19/Netherlands/NoordBrabant_10040/2020
 ATTAAA1- C241T C3037T C14408T A23403G A24862G AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_454950
 2020-03-20 2020-05-29
 China hCoV-19/Wuhan/HB-WH4-196/2020
 C9924A G16117C C21707T

EPI_ISL_454963
 2020-03-20 2020-05-29
 China hCoV-19/Wuhan/HB-WH4-214/2020
 

EPI_ISL_454967
 2020-03-20 2020-05-29
 China hCoV-19/Wuhan/HB-WH5-222/2020
 G26144T

EPI_ISL_455164
 2020-03-20 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_360/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G12550A C14408T A20268G C20740A A23403G G26501T G29734C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455396
 2020-03-20 2020-05-29
 China hCoV-19/Wuhan/HB-WH6-243/2020
 C1238A GCTTTTGGCTTAGTTGCAGAGTG7223- C27509A

EPI_ISL_455589
 2020-03-20 2020-06-01
 Thailand hCoV-19/Thailand/Nonthaburi_3481/2020
 A895G A2524G C2942T A3778G G4390T C8782T T8987A C9598T G20134T G24047A G27877T T28144C AAAA29900-

EPI_ISL_455591
 2020-03-20 2020-06-01
 Thailand hCoV-19/Thailand/Nonthaburi_3479/2020
 A895G C2942T C3768T G4390T C8782T C9598T G20134T G24047A C27149T T27704C G27877T T28144C AAAAAAAAAAAA29892-

EPI_ISL_455592
 2020-03-20 2020-06-01
 Thailand hCoV-19/Thailand/Nonthaburi_3478/2020
 A895G C2942T G4390T C8782T C9598T G20134T G24047A G27877T T28144C AAAAAAAAAAAA29892-

EPI_ISL_455593
 2020-03-20 2020-06-01
 Thailand hCoV-19/Thailand/Nonthaburi_3472/2020
 C241T T1294C C3037T C14408T A23403G GGG28881AAC -29686C AAAAAAAAAAAA29892-

EPI_ISL_455735
 2020-03-20 2020-06-01
 Spain hCoV-19/Spain/Valencia_h2647/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C527T C8782T A18978G C26088T T28144C ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_456056
 2020-03-20 2020-06-01
 United States hCoV-19/USA/NY-NYUMC820/2020
 C241T C2416T C3037T C14408T A23403G G25563T

EPI_ISL_456146
 2020-03-20 2020-06-02
 Colombia hCoV-19/Colombia/INS-82457/2020
 C241T C3037T C14408T A20268G A23403G

EPI_ISL_456169
 2020-03-20 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR0901/2020
 G11083T C14805T G26144T G28842T

EPI_ISL_456170
 2020-03-20 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR0914/2020
 C241T C1059T C3037T T4214C C14408T A23403G G25563T G25906T G29744A

EPI_ISL_456182
 2020-03-20 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1016/2020
 C8782T C17747T A17858G C18060T G19072T A24694T T28144C

EPI_ISL_456183
 2020-03-20 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1018/2020
 C241T C3037T C14408T C17518T A23403G GGG28881AAC

EPI_ISL_456184
 2020-03-20 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1019/2020
 G1440A G2891A C10507T A28675T

EPI_ISL_456185
 2020-03-20 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1020/2020
 G1440A G2891A C10507T A28675T

EPI_ISL_456186
 2020-03-20 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1022/2020
 G1440A G2891A C10507T A28675T

EPI_ISL_456193
 2020-03-20 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1115/2020
 A1904G C5826T C8090T C10789T

EPI_ISL_456194
 2020-03-20 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1133/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_456200
 2020-03-20 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1275/2020
 T490A C3177T C8782T T18736C C19386T G19684T C24034T T26729C C27635T G28077C T28144C A29700G

EPI_ISL_456201
 2020-03-20 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1276/2020
 C3096T T4699C G11083T C12781T G13627T C14805T C15540T G17944T G26144T A28338G G28881A A29731G

EPI_ISL_456202
 2020-03-20 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1277/2020
 C241T C1594T C3037T C11109T C14408T A23403G G25563T

EPI_ISL_456203
 2020-03-20 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1278/2020
 C241T C3037T C14408T A23403G G24077T

EPI_ISL_456205
 2020-03-20 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1280/2020
 C3096T T4699C T6001C G11083T C12781T G13627T C14805T C15540T G17944T G26144T A28338G G28881A A29731G

EPI_ISL_456206
 2020-03-20 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1281/2020
 C241T C1059T C3037T G11083T C14408T A23403G C23453T G25563T G29383T

EPI_ISL_456213
 2020-03-20 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1297/2020
 C5000A C8782T T9477A C14805T G25979T T28144C C28657T C28863T

EPI_ISL_456214
 2020-03-20 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1298/2020
 C241T C1059T A2018G C3037T C14408T A23403G G25563T

EPI_ISL_457790 MT646086
 2020-03-20 2020-06-02
 United States SARS-CoV-2/human/USA/MD-HP00017/2020
 C241T T833C C1059T C3037T A13660C C14408T A23403G G25563T C27964T

EPI_ISL_457798 MT646070
 2020-03-20 2020-06-02
 United States SARS-CoV-2/human/USA/MD-HP00055/2020
 A2480G C2558T A4912C G11083T C14805T C17010A C21575T G26144T

EPI_ISL_457833
 2020-03-20 2020-06-02
 Kenya hCoV-19/Kenya/NIC_187/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2937T C3037T C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_457986
 2020-03-20 2020-06-02
 Oman hCoV-19/Oman/RESP-20-3700/2020
 G19509A

EPI_ISL_457987
 2020-03-20 2020-06-02
 Oman hCoV-19/Oman/RESP-20-4028/2020
 G26144T

EPI_ISL_458228
 2020-03-20 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0320258/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T C17304T A23403G C25433T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458232
 2020-03-20 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0320262/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C11956T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_459972
 2020-03-20 2020-06-05
 Morocco hCoV-19/Morocco/6894/2020
 C241T C1684T C3037T G6404T C8208T C14408T C15324T G22363T A23403G C29362T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_459973
 2020-03-20 2020-06-05
 Morocco hCoV-19/Morocco/6895/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18263T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_459974
 2020-03-20 2020-06-05
 Morocco hCoV-19/Morocco/6896/2020
 ATTAAAGGTTTATACCTTCCC1- C241T C1684T C3037T G6404T C8208T C14408T C15324T G22363T A23403G C29362T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_460338 MT520413
 2020-03-20 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00551/2020
 ATTAAAGGTTTA1- G271A C8782T C17747T A17858G C18060T C21614T A24694T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_460349 MT520424
 2020-03-20 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00553/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C2263A C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_460399 MT520474
 2020-03-20 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00576/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T C2416T C3037T T5218C C12789T C14408T A23403G G25563T G26233T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460406 MT520481
 2020-03-20 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00684/2020
 ATTAAA1- C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_460668
 2020-03-20 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_495/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C478T C3037T G12550A C14408T A20268G C20740A A23403G C29548A G29734C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460672
 2020-03-20 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_499/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4586T G12550A C14408T A20268G C20740A A23403G G29734C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460780
 2020-03-20 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_617/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T C25714T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460781
 2020-03-20 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_618/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A11438G C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461031
 2020-03-20 2020-06-06
 Netherlands hCoV-19/Netherlands/Limburg_43/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10956T A11438G C14408T A23403G C27046T GTTCTA28090- GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461148
 2020-03-20 2020-06-06
 Netherlands hCoV-19/Netherlands/NoordBrabant_113/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- A4822C C9073T C14585T C17410T C26642T C28253T C29025T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_462162
 2020-03-20 2020-06-08
 Belgium hCoV-19/Belgium/VRS-0320308/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3340C C14408T T23287C A23403G A23870G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462286
 2020-03-20 2020-06-08
 Singapore hCoV-19/Singapore/168/2020
 C6310A C6312A G11083T C13730T C19524T C23929T C28311T AAAAAAAAAAAAAAAAAAAA29884-

EPI_ISL_462389
 2020-03-20 2020-06-08
 Singapore hCoV-19/Singapore/271/2020
 C241T C3037T G4285R C14408T C23029Y A23403G GGG28881AAC A29707R AAAAAAAAAAAA29892-

EPI_ISL_462410
 2020-03-20 2020-06-08
 Singapore hCoV-19/Singapore/292/2020
 C241T C3037T C14408T A23403G G28378K GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_462415
 2020-03-20 2020-06-08
 Singapore hCoV-19/Singapore/297/2020
 A895G C2942T G4390T C8782T C9598T G14187A G20134T G24047A T28144C AAAAAAAAAAAA29892-

EPI_ISL_462453
 2020-03-20 2020-06-08
 Bosnia and Herzegovina hCoV-19/Bosnia and Herzegovina/ChVir7346/2020
 ATTAAAGGTTT1- C241T C3037T C10336T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_462454
 2020-03-20 2020-06-08
 Bosnia and Herzegovina hCoV-19/Bosnia and Herzegovina/ChVir7347/2020
 ATTAAAG1- C241T C3037T C10336T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_462455
 2020-03-20 2020-06-08
 Bosnia and Herzegovina hCoV-19/Bosnia and Herzegovina/ChVir7348/2020
 ATTAAAGGTTTATACCT1- C241T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_462456
 2020-03-20 2020-06-08
 Bosnia and Herzegovina hCoV-19/Bosnia and Herzegovina/ChVir7349/2020
 ATTAAAGGTTTAT1- C241T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_462457
 2020-03-20 2020-06-08
 Bosnia and Herzegovina hCoV-19/Bosnia and Herzegovina/ChVir7350/2020
 ATTAAAGGTTTAT1- C241T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_464115
 2020-03-20 2020-06-11
 South Africa hCoV-19/SouthAfrica/Tygerberg_04/2020
 ATG1605- T29492C

EPI_ISL_464117
 2020-03-20 2020-06-11
 South Africa hCoV-19/SouthAfrica/Tygerberg_06/2020
 G2198A A2480G C2558T G11083T C14805T C15952T C17977T G26144T

EPI_ISL_468394 MT628130
 2020-03-20 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1421/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C1059T A2018G C3037T C4890Y C14408T G18021K A23403G G25563T G29195K CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_468395 MT628131
 2020-03-20 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1423/2020
 C241T C3037T C5467T C8389T C14408T A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_468396 MT628132
 2020-03-20 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1424/2020
 ATTA1- C241T C3037T C5467T C8389T C14408T A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_468397 MT628133
 2020-03-20 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1425/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C1059T A2018G C3037T C7162Y C14408T C22281Y A23403G G25563T G25687S TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_468979
 2020-03-20 2020-06-17
 Spain hCoV-19/Spain/Palma2513/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T

EPI_ISL_468991
 2020-03-20 2020-06-17
 Spain hCoV-19/Spain/Palma2520/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T

EPI_ISL_469019
 2020-03-20 2020-06-17
 Italy hCoV-19/Italy/IZSPB_804/2020
 A1CCCCGGA C241T C1513T C3037T C14408T C19687T A23403G G29348T C29836A GC29853AA G29861A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_469021
 2020-03-20 2020-06-17
 Italy hCoV-19/Italy/IZSPB_813/2020
 A1CCCCCGA C241T C3037T T4092C C14408T A23403G G29861T A29876G AAAAAAAAAAAAAAAAAAAAAAAAAA29878C

EPI_ISL_469022
 2020-03-20 2020-06-17
 Italy hCoV-19/Italy/IZSPB_847/2020
 A1CCCAACACCGA C241T C3037T T4092C C14408T A23403G -29904AAAAAAAAAAAA

EPI_ISL_469229
 2020-03-20 2020-06-18
 Canada hCoV-19/Canada/NL_87/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T C25688T ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_470845
 2020-03-20 2020-06-19
 Australia hCoV-19/Australia/WA28/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_470858
 2020-03-20 2020-06-19
 Australia hCoV-19/Australia/WA41/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C241T C3037T C14408T C17104T A20268G A23403G C29200T G29734C CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_470868
 2020-03-20 2020-06-19
 Australia hCoV-19/Australia/WA51/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C4540T ATAGTT6510- C8140T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_470869
 2020-03-20 2020-06-19
 Australia hCoV-19/Australia/WA52/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_470900
 2020-03-20 2020-06-19
 Russia hCoV-19/Russia/Moscow_PMVL-7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C3037T C14408T A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_471253
 2020-03-20 2020-06-19
 United States hCoV-19/USA/WI-WSLH-200089/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471546
 2020-03-20 2020-06-22
 Brazil hCoV-19/Brazil/SP-537/2020
 C241T C1059Y C1457Y C3037T C12053T C14408T A23403G G25088T GGG28881AAC AAAAAAAAAAAAA29891-

EPI_ISL_475073
 2020-03-20 2020-06-23
 Belgium hCoV-19/Belgium/UGent-113/2020
 C241T C3037T C14408T T19839C A23403G C24099T GGG28881AAC

EPI_ISL_475326
 2020-03-20 2020-06-23
 United Kingdom hCoV-19/England/PORT-2D10E8/2020
 C1457T A2480G C2558T G11083T C14805T C25207T G26144T

EPI_ISL_475327
 2020-03-20 2020-06-23
 United Kingdom hCoV-19/England/PORT-2D10F7/2020
 C1457T A2480G C2558T G11083T C14805T G26144T

EPI_ISL_475328
 2020-03-20 2020-06-23
 United Kingdom hCoV-19/England/PORT-2D1103/2020
 C1457T A2480G C2558T T4369A G11083T C14805T G26144T

EPI_ISL_475456
 2020-03-20 2020-06-23
 United Kingdom hCoV-19/England/SHEF-CD4B8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G5206T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475536
 2020-03-20 2020-06-23
 Sweden hCoV-19/Sweden/20-06070/2020
 C241T C3037T C14408T A20268G A23403G

EPI_ISL_475957
 2020-03-20 2020-06-25
 Singapore hCoV-19/Singapore/426/2020
 C241T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_475959
 2020-03-20 2020-06-25
 Singapore hCoV-19/Singapore/428/2020
 C241T C1059T T2461A C3037T G14290T C14408T A23403G G25563T AAAAAAAAAAAA29892-

EPI_ISL_475960
 2020-03-20 2020-06-25
 Singapore hCoV-19/Singapore/429/2020
 C241T C3037T C14408T G18803T A23403G GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_475968
 2020-03-20 2020-06-25
 Singapore hCoV-19/Singapore/437/2020
 C241T C3037T A11839G C14408T T19839C A23403G GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_475969
 2020-03-20 2020-06-25
 Singapore hCoV-19/Singapore/438/2020
 C241T C1059T C1555Y C3037T T6394C C10319T C14408T G17562K A23403G G25563T C27964T AAAAAAAAAAAA29892-

EPI_ISL_476773
 2020-03-20 2020-06-25
 United States hCoV-19/USA/CA-CZB-1756/2020
 ATTAAAGGTTT1- C27874T

EPI_ISL_476818
 2020-03-20 2020-06-26
 Singapore hCoV-19/Singapore/455nan/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G5432A C14408T A23403G G25563T G27715T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477174
 2020-03-20 2020-06-29
 Singapore hCoV-19/Singapore/451nan/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477198
 2020-03-20 2020-06-29
 Italy hCoV-19/Italy/IZSPB_2627/2020
 A1CCTCCCCGA C241T C2434T C3037T C14408T C18029T A23403G GGG28881AAC -29904AAAAAA

EPI_ISL_477202
 2020-03-20 2020-06-29
 Italy hCoV-19/Italy/IZSPB_854/2020
 A1CCACCGA C241T C3037T C14408T A23403G GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_477616
 2020-03-20 2020-06-29
 Hungary hCoV-19/Hungary/US-1816lc/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18377T A23403G A24862G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477617
 2020-03-20 2020-06-29
 Hungary hCoV-19/Hungary/US-1819lc/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G G25483A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477691
 2020-03-20 2020-06-29
 United States hCoV-19/USA/WA-UW-1624/2020
 ATTAAAG1- C36T C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_477692
 2020-03-20 2020-06-29
 United States hCoV-19/USA/WA-UW-1630/2020
 ATTAAAGGTT1- AAC34TTT C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_477693
 2020-03-20 2020-06-29
 United States hCoV-19/USA/WA-UW-1631/2020
 ATTAAA1- C36T C8782T C17747T A17858G C18060T T28144C

EPI_ISL_477702
 2020-03-20 2020-06-29
 United States hCoV-19/USA/WA-UW-2062/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- C36T C241T C379A C1059T T2244C C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_478052
 2020-03-20 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR311/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- GTT521- G1148T A1515G C9223T T9336- G11083T C14805T T17247C G26144T G28904T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478546
 2020-03-20 2020-06-30
 United Kingdom hCoV-19/England/NORT-284406/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G C9223T C10775A G11083T C14805T T16154C T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478547
 2020-03-20 2020-06-30
 United Kingdom hCoV-19/England/NORT-284415/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C19170T G19509A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478548
 2020-03-20 2020-06-30
 United Kingdom hCoV-19/England/NORT-284424/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C17118T G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478549
 2020-03-20 2020-06-30
 United Kingdom hCoV-19/England/NORT-284433/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2695T C3037T C14408T A23403G C27804T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478550
 2020-03-20 2020-06-30
 United Kingdom hCoV-19/England/NORT-284442/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T C16887T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478551
 2020-03-20 2020-06-30
 United Kingdom hCoV-19/England/NORT-28449D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T T10480C G11083T C14805T T17742C T26130C G26144T C27559T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479226
 2020-03-20 2020-06-30
 United Kingdom hCoV-19/England/SHEF-C730C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G11083T C14805T G26144T G29027T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479869
 2020-03-20 2020-07-01
 Japan hCoV-19/Japan/PG-0158/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T4402C G5062T C8782T G9479T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479902
 2020-03-20 2020-07-01
 Japan hCoV-19/Japan/PG-0197/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_479911
 2020-03-20 2020-07-01
 Japan hCoV-19/Japan/PG-0211/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C3037T C14408T A20268G A23403G C28677T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_479981
 2020-03-20 2020-07-01
 Japan hCoV-19/Japan/PG-0306/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- G3179A C6982T C8782T T28144C TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_480035
 2020-03-20 2020-07-01
 Japan hCoV-19/Japan/PG-0365/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACT1- C241T T1570C C1722T C3037T C14408T T15132C A23403G A26530G ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_482325
 2020-03-20 2020-07-03
 United States hCoV-19/USA/OR-PROV-043/2020
 G29711T

EPI_ISL_482326
 2020-03-20 2020-07-03
 United States hCoV-19/USA/OR-PROV-044/2020
 G11083T C14805T G26144T

EPI_ISL_483004
 2020-03-20 2020-07-06
 United States hCoV-19/USA/MN-MDH-1283/2020
 AT1- C241T C1059T C3037T C13860T C14408T A23403G G25563T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_483005
 2020-03-20 2020-07-06
 United States hCoV-19/USA/MN-MDH-1284/2020
 ATTAAA1- C1238T C8782T A17858G C18060T T28144C T28924C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_483006
 2020-03-20 2020-07-06
 United States hCoV-19/USA/MN-MDH-1285/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T C14408T A23403G G25644T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_483721
 2020-03-20 2020-07-08
 Israel hCoV-19/Israel/n14274/2020
 G1440A T2506C G2891A C5147T A5163C A8415T C8480T AT9874- A10844G A13755- G13846- G13856T T13935C A19526T C20195T TG21246- A21311- A27669G C28603T C29144T

EPI_ISL_484091
 2020-03-20 2020-07-08
 United Kingdom hCoV-19/England/GSTT-265DCB9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G C7851T C9223T G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484093
 2020-03-20 2020-07-08
 United Kingdom hCoV-19/England/GSTT-265DCD7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G24368T G25563T G29773T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484095
 2020-03-20 2020-07-08
 United Kingdom hCoV-19/England/GSTT-265DD01/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1150T C3037T C14408T A22481T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484096
 2020-03-20 2020-07-08
 United Kingdom hCoV-19/England/GSTT-265DD10/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G17944T A23403G G25951T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_486429 MT738173
 2020-03-20 2020-07-09
 Brazil SARS-CoV-2/human/BRA/HIAE-SP04/2020
 C241T C3037T C12053T C14408T A23403G G25088T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_486653
 2020-03-20 2020-07-10
 Italy hCoV-19/Italy/Hsacco-16/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T G17334T A23403G CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

EPI_ISL_488580
 2020-03-20 2020-07-14
 United Kingdom hCoV-19/England/NORT-28448E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C2558T G11083T C14805T T25202K G26144T G28851T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488600
 2020-03-20 2020-07-14
 United Kingdom hCoV-19/England/NORT-284891/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C850T C6449T C8782T G13617T T25202K C26088T G26951T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488674
 2020-03-20 2020-07-14
 United Kingdom hCoV-19/England/NORT-284460/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C5724T G11083T C14805T T18083C T25202K G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488743
 2020-03-20 2020-07-14
 United Kingdom hCoV-19/England/NORT-284451/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G6653A C9170T G11083T C14805T G26144T G28001T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488752
 2020-03-20 2020-07-14
 United Kingdom hCoV-19/England/NORT-2818EF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G T7717Y C9223T G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488755
 2020-03-20 2020-07-14
 United Kingdom hCoV-19/England/NORT-281876/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5646T C14408T A20268G A23403G G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488769
 2020-03-20 2020-07-14
 United Kingdom hCoV-19/England/NORT-281858/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C593T T1339C A2480G C2558T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488783
 2020-03-20 2020-07-14
 United Kingdom hCoV-19/England/NORT-2818A3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C850T C6449T C8782T G13617T C26088T G26951T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488793
 2020-03-20 2020-07-14
 United Kingdom hCoV-19/England/NORT-28183A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A C1612Y G2891A C10507T G27906T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488798
 2020-03-20 2020-07-14
 United Kingdom hCoV-19/England/NORT-2817A6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488804
 2020-03-20 2020-07-14
 United Kingdom hCoV-19/England/NORT-281849/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G C9223T G11083T C14805T T17247C A17799G C19170T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489643
 2020-03-20 2020-07-14
 United Kingdom hCoV-19/Scotland/GCVR-16FB58/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1156T ATG1605- C12710T C23248T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_490999
 2020-03-20 2020-07-15
 United States hCoV-19/USA/MA-UW-MAYO44/2020
 ATT1- A4W C36T C241T C1059T C3037T C4246T C14408T G18155T A23403G G24872T G25563T G26466A -29904AAAAAA

EPI_ISL_491094
 2020-03-20 2020-07-16
 Czech Republic hCoV-19/Czech Republic/NRL_4105/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T C29774T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491095
 2020-03-20 2020-07-16
 Czech Republic hCoV-19/Czech Republic/NRL_4253/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7011T C12534T C14408T C22432T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491452
 2020-03-20 2020-07-17
 Costa Rica hCoV-19/Costa Rica/INC-0041/2020
 ATTAAAGGTTTATACCT1- C241T C1059T C3037T C14408T A23403G G25563T -29831C CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

EPI_ISL_491455
 2020-03-20 2020-07-17
 Costa Rica hCoV-19/Costa Rica/INC-0044/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_492109
 2020-03-20 2020-07-20
 Australia hCoV-19/Australia/SAP119/2020
 ATTA1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T

EPI_ISL_492138
 2020-03-20 2020-07-20
 Australia hCoV-19/Australia/SAP373/2020
 AT1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T

EPI_ISL_492139
 2020-03-20 2020-07-20
 Australia hCoV-19/Australia/SAP374/2020
 AT1- C241T C1059T C3037T C14408T C18928T A23403G G25455T G25563T C26801T CACCGAGGCCACGCG29730-

EPI_ISL_492145
 2020-03-20 2020-07-20
 Australia hCoV-19/Australia/SAP380/2020
 ATTA1- C6312A G11083T C13730T C14117A C23929T C28311T

EPI_ISL_492151
 2020-03-20 2020-07-20
 Australia hCoV-19/Australia/SAP386/2020
 ATTAAAGGTTTATACCTTCCC1- C241T C3037T G8303A C14408T A23403G GGG28881AAC

EPI_ISL_492156
 2020-03-20 2020-07-20
 Australia hCoV-19/Australia/SAP391/2020
 AT1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T

EPI_ISL_492157
 2020-03-20 2020-07-20
 Australia hCoV-19/Australia/SAP392/2020
 ATTA1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T

EPI_ISL_492162
 2020-03-20 2020-07-20
 Australia hCoV-19/Australia/SAP397/2020
 ATTAAAGGTTTATACCT1- C241T C1489T C3037T C14408T A20268G A23403G

EPI_ISL_492165
 2020-03-20 2020-07-20
 Australia hCoV-19/Australia/SAP400/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C4540T A8651C C8782T T9477A G11083T C14805T G25979T T28144C C28311T C28657T C28863T

EPI_ISL_492894
 2020-03-20 2020-07-20
 United Kingdom hCoV-19/England/LOND-124C5E6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2164A C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493202
 2020-03-20 2020-07-21
 Taiwan hCoV-19/Taiwan/NCKUH-007/2020
 ATTAAAGGTTTATACC1- A2480G C2558T C6675T G11083T T12532C C14805T G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_494618
 2020-03-20 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1462/2020
 ATTAAAGGTTTAT1- G11083T C14805T C18086T G23012C G26144T G28842T

EPI_ISL_494619
 2020-03-20 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1463/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_494721
 2020-03-20 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1660/2020
 ATTAAAGGTTTATACCT1- C241T C3037T C14408T A20268G A23403G

EPI_ISL_494729
 2020-03-20 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1669/2020
 ATTAAAGG1- C241T C379A C1059T C3037T G4657A G6170C C14408T G21578T A23403G G25563T

EPI_ISL_494734
 2020-03-20 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1674/2020
 AT1- C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_494970
 2020-03-20 2020-07-22
 Canada hCoV-19/Canada/LTRI-18/2020
 ATTAAAGGTTTAT1- C241T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495355 MT791891
 2020-03-20 2020-07-22
 United States SARS-CoV-2/human/USA/FL-BPHL-0449/2020
 ATTAAAGGTTTA1- C241T C3037T C14408T A23403G AGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29799-

EPI_ISL_497775
 2020-03-20 2020-07-25
 China hCoV-19/Hong Kong/HKU-200723-008/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1666C C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_497846
 2020-03-20 2020-07-25
 China hCoV-19/Hong Kong/HKU-200723-079/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC C29362T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498034
 2020-03-20 2020-07-26
 South Korea hCoV-19/Korea/KCDC2133/2020
 AT1- C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_498035
 2020-03-20 2020-07-26
 South Korea hCoV-19/Korea/KCDC2134/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_498038
 2020-03-20 2020-07-26
 South Korea hCoV-19/Korea/KCDC2137/2020
 C241T C1059T C3037T C14408T A23403G G25563T G29705T

EPI_ISL_498039
 2020-03-20 2020-07-26
 South Korea hCoV-19/Korea/KCDC2138/2020
 AT1- C241T C1059T C3037T C14408T A23403G G25563T G29705T

EPI_ISL_498040
 2020-03-20 2020-07-26
 South Korea hCoV-19/Korea/KCDC2139/2020
 A1- C241T C3037T C14408T A23403G G25429T

EPI_ISL_499641
 2020-03-20 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A587E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- T592C G1440A G2891R C4668T C26447T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_499642
 2020-03-20 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A58BA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C8293T C14408T T18488C A23403G T24739C A26530R TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_499819
 2020-03-20 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A5401/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- ATG1605- G12518A G15025A C20270T A29683W

EPI_ISL_499822
 2020-03-20 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A55E0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- ATG1605- C11355T C20270T G21451A C29095T A29683W

EPI_ISL_499823
 2020-03-20 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A56FC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- ATG1605- C11355T C20270T G21451A C29095T A29683W TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_500119
 2020-03-20 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A5498/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T C15324T C21058T A23403G C24134T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_500121
 2020-03-20 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A54C5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T C16289T A19682G A23403G G25429T

EPI_ISL_500125
 2020-03-20 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A5559/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_500131
 2020-03-20 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A55D1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1593T C3037T C14408T A23403G T24127C C29741T

EPI_ISL_500136
 2020-03-20 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A5674/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T A2285G C3037T G11083T C14408T C19170T G19509A A23403G G26116T GGG28881AAC

EPI_ISL_500140
 2020-03-20 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A56CF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A7479G G11083T C14805T T17247C C25572T T25852A G26144T C28887T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_500147
 2020-03-20 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A5762/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- T1910A A2480G C2558T T5338C A7259G G11083T C14805T T19119C G26144T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_500155
 2020-03-20 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A5814/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A2480G C2558T T9630C G11083T C14805T C17010A G26144T

EPI_ISL_500430
 2020-03-20 2020-07-28
 Spain hCoV-19/Spain/COV005998/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C1059T C3037T A4501G C10954T T13006C C14408T G17302T A23403G G25563T C25688T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_500431
 2020-03-20 2020-07-28
 Spain hCoV-19/Spain/COV005999/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C1059T C3037T C8502Y T13006C C14408T G17302T A23403G C23502Y G25563T C25688T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_500506
 2020-03-20 2020-07-29
 United States hCoV-19/USA/NY-UW-MAYO27/2020
 ATTAAAGGTT1- AAC34TTT C241T C1059T C3037T C14408T C16260T A23403G G25563T C28821A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_500507
 2020-03-20 2020-07-29
 United States hCoV-19/USA/NY-UW-MAYO28/2020
 ATTAAA1- C36T C241T C1059T C3037T C14408T C16260T A23403G G25563T C28821A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_500601
 2020-03-20 2020-07-29
 Australia hCoV-19/Australia/NSW2017/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500604
 2020-03-20 2020-07-29
 Australia hCoV-19/Australia/NSW2021/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6723T C14408T A23403G T26094C CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500605
 2020-03-20 2020-07-29
 Australia hCoV-19/Australia/NSW2026/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500606
 2020-03-20 2020-07-29
 Australia hCoV-19/Australia/NSW2027/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T A15192C C17747T A17858G C18060T C21904T A24694T T28144C CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500612
 2020-03-20 2020-07-29
 Australia hCoV-19/Australia/NSW2041/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T C28657T GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500613
 2020-03-20 2020-07-29
 Australia hCoV-19/Australia/NSW2042/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500614
 2020-03-20 2020-07-29
 Australia hCoV-19/Australia/NSW2043/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C25350T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500615
 2020-03-20 2020-07-29
 Australia hCoV-19/Australia/NSW2044/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500617
 2020-03-20 2020-07-29
 Australia hCoV-19/Australia/NSW2046/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C14805T G26144T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500642
 2020-03-20 2020-07-29
 Australia hCoV-19/Australia/NSW2171/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500651
 2020-03-20 2020-07-29
 Australia hCoV-19/Australia/NSW2188/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500654
 2020-03-20 2020-07-29
 Australia hCoV-19/Australia/NSW2192/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T GATATGGTT11267- C17747T A17858G C18060T A24694T T28144C CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500657
 2020-03-20 2020-07-29
 Australia hCoV-19/Australia/NSW2196/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500658
 2020-03-20 2020-07-29
 Australia hCoV-19/Australia/NSW2197/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C19185T A23403G G25563T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500659
 2020-03-20 2020-07-29
 Australia hCoV-19/Australia/NSW2198/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500660
 2020-03-20 2020-07-29
 Australia hCoV-19/Australia/NSW2199/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G C28854T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500669
 2020-03-20 2020-07-29
 Australia hCoV-19/Australia/NSW2216/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17747T A17858G C18060T A24694T T28144C CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500670
 2020-03-20 2020-07-29
 Australia hCoV-19/Australia/NSW2218/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500671
 2020-03-20 2020-07-29
 Australia hCoV-19/Australia/NSW2220/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500672
 2020-03-20 2020-07-29
 Australia hCoV-19/Australia/NSW2221/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500673
 2020-03-20 2020-07-29
 Australia hCoV-19/Australia/NSW2222/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T28144C CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500674
 2020-03-20 2020-07-29
 Australia hCoV-19/Australia/NSW2226/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_501074
 2020-03-20 2020-07-30
 United States hCoV-19/USA/GA-UW-MAYO63/2020
 ATTAAAGGTTTATACCTTCCCAG1- A27C ACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCG31- A136G C140G A143T G174B T490A C3177T C8782T C12924T T18736C A23503G C24034T T26729C A26793T C27635T G28077C T28144C C28824T A29700G T29765A A29771V TAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29775-

EPI_ISL_507015 MT820466
 2020-03-20 2020-07-30
 Saudi Arabia SARS-CoV-2/human/SAU/KAIMRC09/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C14408T A23403G G24368T G25563T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_507087
 2020-03-20 2020-08-03
 United Kingdom hCoV-19/England/LOND-124D354/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G1440A G2891A G6463T A24178G A27669G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_507692
 2020-03-20 2020-08-03
 United States hCoV-19/USA/MI-MDHHS-SC21438/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C1059T C3037T C14408T A23403G G25563T C27476Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507693
 2020-03-20 2020-08-03
 United States hCoV-19/USA/MI-MDHHS-SC21439/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T C1059T C2416Y C3037T C14408T A23403G G25563T C27847Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507696
 2020-03-20 2020-08-03
 United States hCoV-19/USA/MI-MDHHS-SC21442/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C14408T A23403G G25563T C25976A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507701
 2020-03-20 2020-08-03
 United States hCoV-19/USA/MI-MDHHS-SC21447/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C1059T C3037T C7765T C14408T A23403G G25563T TGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29840-

EPI_ISL_507706
 2020-03-20 2020-08-03
 United States hCoV-19/USA/MI-MDHHS-SC21452/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T A5011M C14408T A23403G G25563T TGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29840-

EPI_ISL_508131
 2020-03-20 2020-08-04
 Australia hCoV-19/Australia/SAP440/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T

EPI_ISL_508135
 2020-03-20 2020-08-04
 Australia hCoV-19/Australia/SAP444/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G11083T C14805T G26144T C26606T G28842T A29903-

EPI_ISL_508136
 2020-03-20 2020-08-04
 Australia hCoV-19/Australia/SAP445/2020
 AT1- C241T C1489T C3037T C14408T A20268G A23403G GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_508137
 2020-03-20 2020-08-04
 Australia hCoV-19/Australia/SAP446/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C10851T C14408T G20931T A23403G C23439T G25563T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_508138
 2020-03-20 2020-08-04
 Australia hCoV-19/Australia/SAP447/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_508780 MT834622
 2020-03-20 2020-08-04
 United States SARS-CoV-2/human/USA/FL-BPHL-0576/2020
 ATTAAA1- C241T C601T C3037T C8389T C14408T G21399A A23403G G25563T G27915A TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_508788 MT834632
 2020-03-20 2020-08-04
 United States SARS-CoV-2/human/USA/FL-BPHL-0584/2020
 AT1- T490A C3177T C8782T C9565T T18736C G19684T C24034T T26729C C27635T G28077C T28144C A29700G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_508862
 2020-03-20 2020-08-04
 Madagascar hCoV-19/Madagascar/Antananarivo-01650/2020
 ATTAAAGGTTT1- C241T C2416T C3037T C5884T C14408T A20712R T20717K A23403R G25563T T29360K C29364M AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_509492
 2020-03-20 2020-08-05
 Australia hCoV-19/Australia/NSW2029/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T C18086T G26144T G28842T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_509497
 2020-03-20 2020-08-05
 Australia hCoV-19/Australia/NSW2071/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_509506
 2020-03-20 2020-08-05
 Australia hCoV-19/Australia/NSW2166/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_509507
 2020-03-20 2020-08-05
 Australia hCoV-19/Australia/NSW2177/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_509509
 2020-03-20 2020-08-05
 Australia hCoV-19/Australia/NSW2182/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4540T C14805T G25979T T28144C C28311T C28657T C28863T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_509511
 2020-03-20 2020-08-05
 Australia hCoV-19/Australia/NSW2232/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17747T A17858G C18060T A24694T T28144C CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_509520
 2020-03-20 2020-08-05
 Australia hCoV-19/Australia/NSW2318/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17747T A17858G C18060T A24694T T28144C CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_509702 MT844036
 2020-03-20 2020-08-05
 Guatemala SARS-CoV-2/human/GTM/CDC-1235/2020
 C241T C3037T C11379T C14408T A20268G A23403G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_509711 MT844023
 2020-03-20 2020-08-05
 Belize SARS-CoV-2/human/BLZ/CDC-6840/2020
 C241T C313T C3037T C14408T A23403G G25456T GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_509741 MT846445
 2020-03-20 2020-08-05
 United States SARS-CoV-2/human/USA/FL-BPHL-0683/2020
 A1- C8782T C17747T A17858G C18060T G19072T A24694T T28144C TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_511036
 2020-03-20 2020-08-07
 Portugal hCoV-19/Portugal/PT0777a/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511066
 2020-03-20 2020-08-07
 Portugal hCoV-19/Portugal/PT0807/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511067
 2020-03-20 2020-08-07
 Portugal hCoV-19/Portugal/PT0808/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511069
 2020-03-20 2020-08-07
 Portugal hCoV-19/Portugal/PT0810/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511070
 2020-03-20 2020-08-07
 Portugal hCoV-19/Portugal/PT0811/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511071
 2020-03-20 2020-08-07
 Portugal hCoV-19/Portugal/PT0812/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511072
 2020-03-20 2020-08-07
 Portugal hCoV-19/Portugal/PT0813/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511073
 2020-03-20 2020-08-07
 Portugal hCoV-19/Portugal/PT0814/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511074
 2020-03-20 2020-08-07
 Portugal hCoV-19/Portugal/PT0815/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511076
 2020-03-20 2020-08-07
 Portugal hCoV-19/Portugal/PT0817/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511077
 2020-03-20 2020-08-07
 Portugal hCoV-19/Portugal/PT0818/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C11663T C14408T A20268G A23403G G29734C TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511079
 2020-03-20 2020-08-07
 Portugal hCoV-19/Portugal/PT0820/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C11663T C14408T A20268G A23403G G29734C TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511080
 2020-03-20 2020-08-07
 Portugal hCoV-19/Portugal/PT0821/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511082
 2020-03-20 2020-08-07
 Portugal hCoV-19/Portugal/PT0823/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC C29025T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511083
 2020-03-20 2020-08-07
 Portugal hCoV-19/Portugal/PT0824/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T T721C C3037T C14408T A23403G C25549T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511147
 2020-03-20 2020-08-07
 Portugal hCoV-19/Portugal/PT0889/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3267T C5055T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511148
 2020-03-20 2020-08-07
 Portugal hCoV-19/Portugal/PT0890/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T G16853T A23403G GGG28881AAC A29396G G29449T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511149
 2020-03-20 2020-08-07
 Portugal hCoV-19/Portugal/PT0891/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C241T C3037T G11527T C14408T A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511150
 2020-03-20 2020-08-07
 Portugal hCoV-19/Portugal/PT0892/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T G11527T C14408T A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511151
 2020-03-20 2020-08-07
 Portugal hCoV-19/Portugal/PT0893/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C3037T C14408T T21864C A23403G GGG28881AAC C29296T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511152
 2020-03-20 2020-08-07
 Portugal hCoV-19/Portugal/PT0894/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511231
 2020-03-20 2020-08-07
 Portugal hCoV-19/Portugal/PT1270/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C14408T C16733T C21621T A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511232
 2020-03-20 2020-08-07
 Portugal hCoV-19/Portugal/PT1271/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- A2480G C2558T G11083T C14805T A17715T G26144T G28917T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511233
 2020-03-20 2020-08-07
 Portugal hCoV-19/Portugal/PT1272/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC A29396G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511433
 2020-03-20 2020-08-07
 Portugal hCoV-19/Portugal/PT1474/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C1059T C3037T A13712G C14408T A20676G A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511458
 2020-03-20 2020-08-07
 Portugal hCoV-19/Portugal/PT1499/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3140T C13059T C14408T A23403G G24077T C29013T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511685
 2020-03-20 2020-08-08
 Portugal hCoV-19/Portugal/PT1138/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A20268G C22088T A23403G C25824T A29086T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511716
 2020-03-20 2020-08-08
 Portugal hCoV-19/Portugal/PT1170/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C8782T C26088T T28144C TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511717
 2020-03-20 2020-08-08
 Portugal hCoV-19/Portugal/PT1171/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C6636T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_512409
 2020-03-20 2020-08-11
 United Kingdom hCoV-19/England/PORT-2D2032/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5340T C14408T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_512410
 2020-03-20 2020-08-11
 United Kingdom hCoV-19/England/PORT-2D2041/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1461G C3037T C5730T C14408T G19542T A23403G G24328A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_512411
 2020-03-20 2020-08-11
 United Kingdom hCoV-19/England/PORT-2D206F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_512655
 2020-03-20 2020-08-11
 Costa Rica hCoV-19/Costa Rica/INC-0049/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATC1- C8782T GATATGGTT11267- C17747T A17858G C18060T A24694T T28144C CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

EPI_ISL_513299 MT704817
 2020-03-20 2020-07-03
 Germany SARS-CoV-2/human/DEU/SCoV2_2ZK/2020
 C241T C3037T C3373A C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_513471 MT886345
 2020-03-20 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0060/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAA1- C241T C2416T C3037T G6877T C10369T C14408T G19648T A23403G C23565T G25563T G26233T AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513472 MT886346
 2020-03-20 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0061/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAAT1- C241T C313T C3037T A11348G C14408T A23403G G28690T GGG28881AAC AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513478 MT886352
 2020-03-20 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0067/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTG1- C241T C3037T C10376T C14408T C22450T A23403G AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513483 MT886357
 2020-03-20 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0072/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAA1- C8782T C17747T A17858G C18060T T28144C C28708T AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513493 MT886368
 2020-03-20 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0083/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAA1- C203T G11083T C14805T T17247C C26058T G26144T AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513494 MT886369
 2020-03-20 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0084/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAA1- G1440A G2891A C7011T G11083T AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513499 MT886375
 2020-03-20 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0090/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGG1- C241T C3037T C14408T T22092A C22450T A23403G AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513506 MT886382
 2020-03-20 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0097/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAA1- C241T C3037T C14408T C22450T A23403G AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_514438 MT886367
 2020-03-20 2020-08-12
 United States SARS-CoV-2/human/USA/ME-HETL-J0082/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAAT1- C8782T C17747T A17858G C18060T A24694T T28144C A28254- AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_514439 MT886371
 2020-03-20 2020-08-12
 United States SARS-CoV-2/human/USA/ME-HETL-J0086/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAA1- C8782T C17747T A17858G C18060T A24694T T28144C A28254- AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_514485
 2020-03-20 2020-08-17
 United Kingdom hCoV-19/England/PORT-2D2014/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16289T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_514566
 2020-03-20 2020-08-17
 United Kingdom hCoV-19/Wales/PHWC-169A15/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C6990T C14408T A23403G C29200T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_515316
 2020-03-20 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0030/2020
 ATTA1- C6312A C13730T C28311T

EPI_ISL_515548
 2020-03-20 2020-08-19
 Brazil hCoV-19/Brazil/SP-634/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C12053T C14408T T14501G A23403G G25088T GGG28881AAC TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_515896
 2020-03-20 2020-08-20
 United States hCoV-19/USA/CA-CDPH003/2020
 AT1- G29711T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_515906
 2020-03-20 2020-08-20
 United States hCoV-19/USA/CA-CDPH013/2020
 ATT1- C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T

EPI_ISL_516273
 2020-03-20 2020-08-20
 United States hCoV-19/USA/MI-MDHHS-SC21546/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C1059T C3037T C5211Y C14408T A23403G G25563T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_518890 MT920030
 2020-03-20 2020-08-25
 United States SARS-CoV-2/human/USA/MN-MDH-1497/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- A2480G C2558T G11083T C14805T C17010A C21575T G26144T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_523473
 2020-03-20 2020-08-26
 Netherlands hCoV-19/Netherlands/un-EMC-718/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T17126C A20268G A23403G C28546A C29733T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523474
 2020-03-20 2020-08-26
 Netherlands hCoV-19/Netherlands/un-EMC-719/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1997T C3037T C14408T A23403G G29422T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523950
 2020-03-20 2020-08-27
 Germany hCoV-19/Germany/NW-79/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A T28172C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_527009
 2020-03-20 2020-09-03
 Australia hCoV-19/Australia/NSW2193/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1079C G1397A T7225C C9319T G11083T C19862T T27384C T28688C G29742T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_528242
 2020-03-20 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42199640/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G CACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29730-

EPI_ISL_528243
 2020-03-20 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42199675/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- A187G C241T C2983T C3037T C14408T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528244
 2020-03-20 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42199704/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T C15324T A23403G G28881T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528245
 2020-03-20 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42199724/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T A3305G A3904G C9110T C14408T C15324T A23403G T23489C AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528246
 2020-03-20 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42199737/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G G28798A TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_528247
 2020-03-20 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42199741/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C9319T G11083T C14805T T17247C G26144T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528249
 2020-03-20 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42199777/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528251
 2020-03-20 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42199797/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528252
 2020-03-20 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42199808/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528254
 2020-03-20 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42199841/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T C15324T A23403G C29367T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528255
 2020-03-20 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42199864/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_528257
 2020-03-20 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42199899/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T C19901T A23403G G28690T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_528258
 2020-03-20 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42199905/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C13994T C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528259
 2020-03-20 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42199917/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T T5941A C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528261
 2020-03-20 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42199930/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A2590G C3037T C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528262
 2020-03-20 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42199957/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T A3801G C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528263
 2020-03-20 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42200029/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T C15324T A23403G C28854T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528264
 2020-03-20 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42200048/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T A20268G A23403G C25658T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528265
 2020-03-20 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42200078/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T A20268G A23403G C25658T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528270
 2020-03-20 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42200118/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C832T C3037T C14408T C15324T C20133T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528271
 2020-03-20 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42200131/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528272
 2020-03-20 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42200134/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A18812G A20268G A23403G C28854T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528274
 2020-03-20 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42200253/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528277
 2020-03-20 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42200960/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C7735T C14408T C15324T A23403G TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_528279
 2020-03-20 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42200964/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T C15324T A23403G ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_528280
 2020-03-20 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42200965/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C7735T C14408T C15324T A23403G TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_528281
 2020-03-20 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42201016/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C2708T C3037T C14408T G20069T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_529068
 2020-03-20 2020-09-10
 Peru hCoV-19/Peru/LIM-UPCH-0011/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T A1072G C3037T C4002T G9856T G10097A C13536T C14408T G19962T A22330T A23403G C23731T GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_530041
 2020-03-20 2020-09-10
 Spain hCoV-19/Spain/MD-LP112/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G16744A C18881T A19409G A20268G G21190A A23403G C24023T T26301G ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_530261
 2020-03-20 2020-09-11
 Australia hCoV-19/Australia/QLD981/2020/P1
 A1- G957A C8782T G11083T C17747T A17858G C18060T T28144C AAAAAAAAAA29894-

EPI_ISL_530348
 2020-03-20 2020-09-11
 Czech Republic hCoV-19/Czech Republic/NRL_4182/20/P1
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530349
 2020-03-20 2020-09-11
 Czech Republic hCoV-19/Czech Republic/NRL_4262/20/P1
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A C23423T C26645T C28651T TATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29791-

EPI_ISL_534827
 2020-03-20 2020-09-14
 United Kingdom hCoV-19/England/OXON-B2F2E/2020
 C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_534854
 2020-03-20 2020-09-14
 United Kingdom hCoV-19/England/OXON-B337C/2020
 A1515G C9223T C10277T G11083T C14805T T17247C G25906T G26144T

EPI_ISL_534879
 2020-03-20 2020-09-14
 United Kingdom hCoV-19/England/OXON-B36DD/2020
 A1515G A8121G C9223T G11083T C14805T T17247C G26144T

EPI_ISL_534902
 2020-03-20 2020-09-14
 United Kingdom hCoV-19/England/OXON-B3B38/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_535021
 2020-03-20 2020-09-14
 United Kingdom hCoV-19/England/OXON-B4EC5/2020
 A1515G C9223T G11083T C14805T T17247C G26144T AAAAA29899-

EPI_ISL_535024
 2020-03-20 2020-09-14
 United Kingdom hCoV-19/England/PORT-2D2005/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1457T A2480G C2558T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535874
 2020-03-20 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00228636/2020
 ATTAA1- C241T C3037T C14408T C15324T A23403G C25047Y G28690T TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_535875
 2020-03-20 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00228687/2020
 ATTAAA1- C241T C3037T C14408T A23403G C25613T TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_535876
 2020-03-20 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00228787/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C14408T A23403G C25904T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535879
 2020-03-20 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00228862/2020
 ATTAAA1- C241T T1918C C3037T C14408T C18877T A23403G G25563T G25906T TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_535881
 2020-03-20 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00228950/2020
 ATTAAA1- C241T C3037T C5730T C8208T G9267A T9667C C14408T A23403G G25947T G28361A GGG28881AAC TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_535882
 2020-03-20 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00228954/2020
 ATTA1- C884T G1397A G2635A C2710T A4386G G8653T G10610T G11083T T28688C G29742T TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_535884
 2020-03-20 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00229065/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T C6040T G11083T C14805T G26144T G29742T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535886
 2020-03-20 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00229172/2020
 ATTAAA1- C241T C3037T C14408T A23403G C23557Y GGG28881AAC TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_535887
 2020-03-20 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00229212/2020
 ATTAAA1- C241T C1059T C3037T A9848G G10354T C14408T A23403G G25563T TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_535888
 2020-03-20 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00229288/2020
 ATTAAA1- C241T C3037T C12488T C14408T A23403G GGG28881AAC TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_535889
 2020-03-20 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00229319/2020
 ATTAAA1- C8782T G17280T C17747T A17858G C18060T A24694T T28144C TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_535890
 2020-03-20 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00229326/2020
 ATTAAA1- C241T C1059T A2419G G2808A C3037T C14408T A23403G G25563T A26433G TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_535892
 2020-03-20 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00229384/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T C3096T C9170T G11083T C14805T G26144T A28207T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535893
 2020-03-20 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00229410/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1397A G3476A C5467T G9479T A9514G G11083T T19026A G26720C T28688C T28835C G29742T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535896
 2020-03-20 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00229554/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8208T G9267A T9667C C14408T A23403G G25776T G25947T G28361A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535899
 2020-03-20 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00229671/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G285A C3037T C14408T A23403G A27372T C27494T C29284T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535901
 2020-03-20 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00229727/2020
 ATTAAA1- C241T C3037T G8017T G14229A C14408T G21746C A23403G G29628T TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_535903
 2020-03-20 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00229794/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535904
 2020-03-20 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00229796/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C14422A A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535953
 2020-03-20 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00231304/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535963
 2020-03-20 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00231805/2020
 ATTAAA1- C241T C3037T C14408T G21746C A23403G G28739T TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_535964
 2020-03-20 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00231814/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G11083T C14805T G26144T G27754T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536549
 2020-03-20 2020-09-16
 Peru hCoV-19/Peru/LIM-INS-156/2020
 ATTA1- C241T C3037T C14408T A20268G A23403G

EPI_ISL_536557
 2020-03-20 2020-09-16
 Peru hCoV-19/Peru/ARE-INS-164/2020
 ATTAAAG1- C241T GTCATGTTA510- C3037T C14408T A20268G A23403G

EPI_ISL_536558
 2020-03-20 2020-09-16
 Peru hCoV-19/Peru/ARE-INS-165/2020
 ATTAAAG1- C241T C884T C3037T C5869T C14408T A23403G G25429T

EPI_ISL_536559
 2020-03-20 2020-09-16
 Peru hCoV-19/Peru/ICA-INS-166/2020
 ATTAAAG1- C241T C3037T G10265A G11535T C14408T A23403G GGG28881AAC A29903-

EPI_ISL_537431
 2020-03-20 2020-09-16
 Spain hCoV-19/Spain/RI-CSIC-99005889/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T A2275C C3037T T13006C C14408T A23403G G25563T C25688T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_537439
 2020-03-20 2020-09-16
 Spain hCoV-19/Spain/RI-CSIC-99005900/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C1059T C3037T T13006C C14408T G17302T A23403G G25563T C25688T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537446
 2020-03-20 2020-09-16
 Spain hCoV-19/Spain/RI-CSIC-99005908/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A20268G A23403G G29427K C29743A AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_537447
 2020-03-20 2020-09-16
 Spain hCoV-19/Spain/RI-CSIC-99005909/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T T13006C C14408T G17302T A23403G G25563T C25688T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_537840
 2020-03-20 2020-09-16
 Spain hCoV-19/Spain/RI-CSIC-98002321/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C1059T C3037T T13006C C14408T A14870G G17302T A23403G G25563T C25688T C28121T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_538441
 2020-03-20 2020-09-17
 Singapore hCoV-19/Singapore/173nan/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538442
 2020-03-20 2020-09-17
 Singapore hCoV-19/Singapore/427nan/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11083T C14408T A23403G A25575C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538449
 2020-03-20 2020-09-17
 Singapore hCoV-19/Singapore/129nan/2020
 CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_539001
 2020-03-20 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8396/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1302T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539131
 2020-03-20 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8633/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G15958T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539552
 2020-03-20 2020-09-18
 Spain hCoV-19/Spain/CT-ISCIII-209811/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C1059T C3037T C11067T C12400T C14408T A23403G G25563T GTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29747-

EPI_ISL_540987
 2020-03-20 2020-09-22
 Peru hCoV-19/Peru/ARE-UPCH-0110/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T C14408T A20268G A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_540988
 2020-03-20 2020-09-22
 Peru hCoV-19/Peru/ARE-UPCH-0111/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C884T C3037T C5869T C14408T A23403G G25429T TGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29829-

EPI_ISL_541343
 2020-03-20 2020-09-22
 Brazil hCoV-19/Brazil/PR-5620/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C12053T C14408T A23403G G25088T G25654T GGG28881AAC GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_541373
 2020-03-20 2020-09-22
 Brazil hCoV-19/Brazil/SE-6530/2020
 ATTAAAGGTTTATACCTTCC1- C241T C2716T C3037T C14408T C14786T A23403G GGG28881AAC GAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29781-

EPI_ISL_547448
 2020-03-20 2020-09-24
 Netherlands hCoV-19/Aruba/AW-RIVM-10115/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C14408T A23403G G25563T G26211T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_548368
 2020-03-20 2020-09-26
 United States hCoV-19/USA/CA-CZB-3639/2020
 CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_548996
 2020-03-20 2020-09-28
 Singapore hCoV-19/Singapore/988/2020
 ATTAAAGGTTTATACC1- A2480G C2558T G11083T C14805T C16443T G26144T AAAAAAAAAAAA29892-

EPI_ISL_561365
 2020-03-20 2020-09-30
 United Kingdom hCoV-19/England/GSTT-5496/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1973T A2480G C2558T A8537G G11083T C14805T C25339T G26144T T26732G TCAATTTGCTTTTGCTTGTCCTGACGGCGTAAAACACGTCT27576- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_565981
 2020-03-20 2020-09-30
 United States hCoV-19/USA/MI-MDHHS-SC21921/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C14408T A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_568557
 2020-03-20 2020-10-02
 Japan hCoV-19/Japan/NGY-NNH-002/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G3179A C6385T C6982T C8782T T28144C G29737R TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_568584
 2020-03-20 2020-10-02
 Thailand hCoV-19/Thailand/Bangkok-CONI-0220/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C3037T C14408T A23403G G25563T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_568910
 2020-03-20 2020-10-02
 France hCoV-19/France/IHU-0646/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C14408T C15324T A23403G G25440T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_568911
 2020-03-20 2020-10-02
 France hCoV-19/France/IHU-0647/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T G8371T C14408T A23403G G25563T C26907A TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_568915
 2020-03-20 2020-10-02
 France hCoV-19/France/IHU-0651/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C583T C1059T C3037T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_568916
 2020-03-20 2020-10-02
 France hCoV-19/France/IHU-0653/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1059T C3037T C14408T G16377T A23403G C25207T G25563T T25911C TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569469
 2020-03-20 2020-10-02
 France hCoV-19/France/IHU-0347/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C10681T C14408T C18175T A20268G A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

MT350269
 2020-03-20 2020-04-16
 United States SARS-CoV-2/human/USA/USA-WA_0797/2020
 C8782T T11320C C17747T A17858G C18060T C27416T T28144C C28657T AAAAAAAAAAAAAAAAAAAAA29883-

MT350271
 2020-03-20 2020-04-16
 United States SARS-CoV-2/human/USA/USA-WA_0457/2020
 C8782T T11320C C17747T A17858G C18060T G27604A T28144C C28826T AAAAAAAAAAAAAAAAAAAAA29883-

MT380731
 2020-03-20 2020-04-24
 United States SARS-CoV-2/human/USA/DC-CDC-9096/2020
 C241T C1059T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MT415323
 2020-03-20 2020-04-30
 India SARS-CoV-2/human/IND/GMCTC469/2020
 ATTAAAGGTTTA1- C241T C3037T C14408T A23403G GGG28881AAC C29870M

MT459839
 2020-03-20 2020-05-11
 Greece SARS-CoV-2/human/GRC/37_35684/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

MT459867
 2020-03-20 2020-05-11
 Greece SARS-CoV-2/human/GRC/154_35632/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGG28881AAC C28887T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

MT459987
 2020-03-20 2020-05-12
 United States SARS-CoV-2/human/GUM/GU-NHG-03/2020
 ATTAAAGGTTTAT1- C6312A G11083T C13730T C23929T C28311T G29162T

MT509455
 2020-03-20 2020-05-22
 United States SARS-CoV-2/human/USA/MD-HP00024/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT509456
 2020-03-20 2020-05-22
 United States SARS-CoV-2/human/USA/MD-HP00030/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C6040T C8782T G12478A T18736C C24034T T26729C G28077C T28144C C28896G A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT509477
 2020-03-20 2020-05-22
 United States SARS-CoV-2/human/USA/DC-HP00080/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT510725
 2020-03-20 2020-05-25
 United States SARS-CoV-2/human/USA/hCoV-19-USA-CA-UCSF-UC47/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C8318A C14408T A20268G A23403G C26111T C28854T TGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29840-

MT510726
 2020-03-20 2020-05-25
 United States SARS-CoV-2/human/USA/hCoV-19-USA-CA-UCSF-UC48/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C1059T C3037T C11916T C14408T A23403G G25563T TGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29840-

MT627931
 2020-03-20 2020-06-16
 United States SARS-CoV-2/human/USA/WA-S601/2020
 AT1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

MT671812
 2020-03-20 2020-06-26
 United States SARS-CoV-2/human/USA/CA-CZB-1756/2020
 ATTAAAGGTTT1- C27874T

MT706172
 2020-03-20 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-51/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T G16381A T17877C C20316T G25500T C26124T T28144C G28878A G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706175
 2020-03-20 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-54/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10188T C14408T T19071A A23403G T24982C G25563T C25624T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706195
 2020-03-20 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-74/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G15760A A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706301
 2020-03-20 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-173/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706302
 2020-03-20 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-174/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706303
 2020-03-20 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-175/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G17658T G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706304
 2020-03-20 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-176/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C9474T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706305
 2020-03-20 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-177/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T2116A G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706306
 2020-03-20 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-178/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C9520T G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT810526
 2020-03-20 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1660-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A20268G A23403G CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810534
 2020-03-20 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1669-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C379A C1059T C3037T G4657A G6170C C14408T G21578T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810539
 2020-03-20 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1674-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810836
 2020-03-20 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1462-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- G11083T C14805T C18086T G23012C G26144T G28842T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810837
 2020-03-20 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1463-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810916
 2020-03-20 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0178-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C6255T C14408T A23403G G23426T G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810962
 2020-03-20 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0257-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C1887T C3037T C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT913119
 2020-03-20 2020-08-22
 Germany SARS-CoV-2/human/DEU/SCoV2_2O/2020
 C241T C3037T C3373A C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

MW030216
 2020-03-20 2020-09-22
 Peru SARS-CoV-2/human/PER/covper080/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGT1- C241T C3037T C14408T A20268G A23403G C29675- ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

MW030224
 2020-03-20 2020-09-22
 Peru SARS-CoV-2/human/PER/covper088/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGT1- C241T GTCATGTTA510- C3037T C14408T A20268G A23403G C29675- ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

MW030225
 2020-03-20 2020-09-22
 Peru SARS-CoV-2/human/PER/covper089/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGT1- C241T C884T C3037T C5869T C14408T A23403G G25429T C29675- ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

MW030226
 2020-03-20 2020-09-22
 Peru SARS-CoV-2/human/PER/covper090/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGT1- C241T C3037T G10265A G11535T C14408T A23403G GGG28881AAC C29675- ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

NMDC60013201
 2020-03-20 2020-06-01
 China hCoV-19/Guangzhou/ID054/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1316C G1325T C3037T G7115A G11083T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

NMDC60013215
 2020-03-20 2020-06-01
 China hCoV-19/Guangzhou/ID012/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C1616T C3037T G6271A C14408T C14925T C15810T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417200
 2020-03-21 2020-03-24
 United States hCoV-19/USA/WI-UW-06/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C1929T C8782T G16381A T17877C C20316T G25500T T28144C G28878A G29742A CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_417201
 2020-03-21 2020-03-24
 United States hCoV-19/USA/WI-UW-07/2020
 ATTA1- G8A C8782T G16381A T17877C C20316T G25500T G26211T T28144C G28878A G29742A CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_417202
 2020-03-21 2020-03-24
 United States hCoV-19/USA/WI-UW-08/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T G3871T C14408T A23403G C29614T ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_417203
 2020-03-21 2020-03-24
 United States hCoV-19/USA/WI-UW-09/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C8782T T10771C C17747T A17858G C18060T T28144C GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_417204
 2020-03-21 2020-03-24
 United States hCoV-19/USA/WI-UW-10/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- AA29CT C241T C1059T C3037T C11224T C14408T A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_418645
 2020-03-21 2020-03-30
 Belgium hCoV-19/Belgium/ULG-9558/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A618G C3037T C14408T C15024T C15324T C16887T A23403G C27679T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_419169
 2020-03-21 2020-04-01
 France hCoV-19/France/ARA11939/2020
 C241T C3037T C14408T C21575T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_419170
 2020-03-21 2020-04-01
 France hCoV-19/France/ARA11943/2020
 C241T C3037T C14408T C15324T A15860G A23403G AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_419171
 2020-03-21 2020-04-01
 France hCoV-19/France/ARA11949/2020
 C241T C3037T C14408T C15237T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_419172
 2020-03-21 2020-04-01
 France hCoV-19/France/ARA11950/2020
 C241T C3037T C14408T C15237T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_419173
 2020-03-21 2020-04-01
 France hCoV-19/France/ARA11952/2020
 C241T C3037T C14408T A23403G G25563T G28086T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_419175
 2020-03-21 2020-04-01
 France hCoV-19/France/ARA11995/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_419176
 2020-03-21 2020-04-01
 France hCoV-19/France/ARA11997/2020
 C241T C1059T C3037T C14408T A23403G G25563T G28325A AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_419823 MT451036
 2020-03-21 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC130/2020
 AT1- C8782T A9307G G13118T C17747T A17858G C18060T C22480T A24694T T28144C

EPI_ISL_419824 MT451037
 2020-03-21 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC131/2020
 ATTA1- C241T C1059T C3037T C10851T C14408T A23403G G25563T

EPI_ISL_419825
 2020-03-21 2020-04-03
 Australia hCoV-19/Australia/VIC132/2020
 ATTAAAGGT1- ATG1605- C1912T C25571T

EPI_ISL_419924 MT451129
 2020-03-21 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC229/2020
 ATTAA1- C8782T C17747T A17858G C18060T A24694T T28144C

EPI_ISL_419925
 2020-03-21 2020-04-03
 Australia hCoV-19/Australia/VIC230/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T GTTATG515- C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_419926 MT451130
 2020-03-21 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC231/2020
 ATTA1- C6312A G11083T C13730T C18680T C23929T C28311T

EPI_ISL_419927 MT451131
 2020-03-21 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC232/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T

EPI_ISL_419928 MT451132
 2020-03-21 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC233/2020
 ATTA1- C66T C7334T A7479G G11083T C14805T C15222T T17247C C21575T C25572T G26144T

EPI_ISL_419929 MT451133
 2020-03-21 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC234/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2091T C2416T C3037T G8371T C14408T A23403G G25563T

EPI_ISL_419931 MT451134
 2020-03-21 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC236/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A22798G A23403G G25563T

EPI_ISL_419932 MT451135
 2020-03-21 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC237/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- A38G A1115G C6312A C7093T G11083T C13730T T14313C G21123T C23929T C28311T

EPI_ISL_419933 MT451136
 2020-03-21 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC238/2020
 ATT1- C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_419934 MT451137
 2020-03-21 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC239/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15371T A23403G GGG28881AAC

EPI_ISL_419935 MT451138
 2020-03-21 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC240/2020
 ATTA1- C241T C1572Y C3037T C14408T T19839C A23403G A25968R GGG28881AAC

EPI_ISL_419936 MT451139
 2020-03-21 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC241/2020
 ATTAAAGGTTTA1- C8782T C17747T A17858G C18060T G20773A A24694T T28144C

EPI_ISL_419937
 2020-03-21 2020-04-03
 Australia hCoV-19/Australia/VIC242/2020
 ATTAAAGGT1- ATG1605- C1912T

EPI_ISL_419938 MT451140
 2020-03-21 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC243/2020
 ATTAAAGGTT1- C241T C1059T C3037T C10851T C14408T A23403G C25521T G25563T

EPI_ISL_419939 MT451141
 2020-03-21 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC244/2020
 ATT1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T

EPI_ISL_419940 MT451142
 2020-03-21 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC245/2020
 ATTA1- C241T C1059T G3014A C3037T C10851T C14408T A23403G G25563T

EPI_ISL_419941 MT451143
 2020-03-21 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC246/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T C3037T T11515A C14408T A23403G G25563T G28451C

EPI_ISL_419942 MT451144
 2020-03-21 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC247/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C3037T C10851T C14408T A23403G G25563T

EPI_ISL_419943 MT451145
 2020-03-21 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC248/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C10851T C14408T G20931T A23403G C23439T G25563T A29865G

EPI_ISL_419944 MT451146
 2020-03-21 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC249/2020
 ATTA1- C241T C1427T C3037T G3419A C14408T A23403G GGG28881AAC

EPI_ISL_419945 MT451147
 2020-03-21 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC250/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_419946 MT451148
 2020-03-21 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC251/2020
 ATTA1- G2528A C6312A C9967T G11083T C13730T C23929T C28311T

EPI_ISL_419947 MT451149
 2020-03-21 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC252/2020
 AT1- C241T C3037T C11941T C14408T A23403G G27281T GGG28881AAC

EPI_ISL_419948 MT451150
 2020-03-21 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC253/2020
 ATTA1- C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_419949 MT451151
 2020-03-21 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC254/2020
 AT1- C241T C3037T C14408T A20268G A23403G A24121G C28854T

EPI_ISL_419950 MT451153
 2020-03-21 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC257/2020
 C241T C3037T C14408T A20268G A23403G A24121G C28854T

EPI_ISL_419951 MT451154
 2020-03-21 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC258/2020
 AT1- C241T C1059T C3037T C14408T C21648T A23403G C23673T G25563T

EPI_ISL_419952 MT451155
 2020-03-21 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC259/2020
 ATTA1- C241T C1059T C3037T C14408T C18348Y C21711T A23403G G25563T

EPI_ISL_419953 MT451156
 2020-03-21 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC260/2020
 C241T C1059T C2706T C3037T C5348T C12970T C14408T A23403G A23416T G25563T C28528T C29119T

EPI_ISL_419954 MT451157
 2020-03-21 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC261/2020
 ATTAAAGG1- C241T C1059T C3037T C14408T C21711T A23403G G25563T A29865G

EPI_ISL_419955 MT451158
 2020-03-21 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC262/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C1076T G1397A G3564K A9749G G11083T G24933K C27964T T28688C G29742T

EPI_ISL_419956 MT451159
 2020-03-21 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC263/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T C3037T C10851T C14183T C14408T A23403G G25563T

EPI_ISL_420030
 2020-03-21 2020-04-04
 Democratic Republic of the Congo hCoV-19/DRC/214/2020
 AT1- C241T C3037T C14408T C15277T C15324T A23403G TCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29729-

EPI_ISL_420036 MT451152
 2020-03-21 2020-04-04
 Australia SARS-CoV-2/human/AUS/VIC256/2020
 AT1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T

EPI_ISL_420059
 2020-03-21 2020-04-04
 France hCoV-19/France/IDF3165/2020
 C241T C3037T A10323G C14408T C15324T A23403G AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_420084
 2020-03-21 2020-04-05
 Taiwan hCoV-19/Taiwan/170/2020
 ATTAAA1- C241T C2416T C3037T C5654T C14408T A23403G G25563T G27877T GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_420175
 2020-03-21 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C07F8/2020
 ATG1605- T4949C G6080T C16887T

EPI_ISL_420276
 2020-03-21 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C00B1/2020
 A2480G C2558T C8078T C8917T G11083T C14805T G26144T

EPI_ISL_420277
 2020-03-21 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C0066/2020
 A2480G C2558T C8078T C8917T G11083T C14805T G26144T

EPI_ISL_420278
 2020-03-21 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C0646/2020
 C241T C3037T T7438C G10097A C14408T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_420279
 2020-03-21 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C05A3/2020
 C241T C1469T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_420280
 2020-03-21 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C06A0/2020
 ATG1605- C25708T

EPI_ISL_420282
 2020-03-21 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C05C1/2020
 A2480G C2558T G11083T C14805T G21255A G26144T C26735T C26885T

EPI_ISL_420567
 2020-03-21 2020-04-06
 Italy hCoV-19/Italy/TE5780/2020
 C44A C48A C241T C3037T C4668M T7396W T8827W C14408T A23403G T25811Y C25961S GGG28881AAC AAAA29900-

EPI_ISL_420912
 2020-03-21 2020-04-07
 Germany hCoV-19/Germany/BAV-V2012856/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_420937
 2020-03-21 2020-04-07
 United Kingdom hCoV-19/Wales/PHWC-24CB7/2020
 G1440A G2891A A10323G C25669T T28705G G28851T AA29902-

EPI_ISL_420940
 2020-03-21 2020-04-07
 United Kingdom hCoV-19/Wales/PHWC-24DD2/2020
 C241T C3037T C14408T C20148T A23403G GGG28881AAC

EPI_ISL_420944
 2020-03-21 2020-04-07
 United Kingdom hCoV-19/Wales/PHWC-24FFA/2020
 AT1- C875T ATG1605- C6255T AAAAAAA29897-

EPI_ISL_421195
 2020-03-21 2020-04-07
 Belgium hCoV-19/Belgium/ULG-10017/2020
 C241T C1059T C3037T C14408T A23403G G25563T C28253T

EPI_ISL_421468
 2020-03-21 2020-04-08
 Portugal hCoV-19/Portugal/PT0065/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- C241T C3037T C14408T A23403G G25593T GGG28881AAC CGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29754-

EPI_ISL_421469
 2020-03-21 2020-04-08
 Portugal hCoV-19/Portugal/PT0066/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C14408T A23403G G25593T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_421470
 2020-03-21 2020-04-08
 Portugal hCoV-19/Portugal/PT0067/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C11663T C14408T A20268G A23403G G29734C TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_421471
 2020-03-21 2020-04-08
 Portugal hCoV-19/Portugal/PT0068/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G G25593T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_421472
 2020-03-21 2020-04-08
 Portugal hCoV-19/Portugal/PT0069/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C14408T A23403G C24863T T25191C A27751T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_421473
 2020-03-21 2020-04-08
 Portugal hCoV-19/Portugal/PT0070/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G A27751T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_421474
 2020-03-21 2020-04-08
 Portugal hCoV-19/Portugal/PT0071/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T G21830T A23403G A27751T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_421475
 2020-03-21 2020-04-08
 Portugal hCoV-19/Portugal/PT0072/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G A27751T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_421476
 2020-03-21 2020-04-08
 Portugal hCoV-19/Portugal/PT0073/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G A27751T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_421477
 2020-03-21 2020-04-08
 Portugal hCoV-19/Portugal/PT0074/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G G27014T A27751T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_421478
 2020-03-21 2020-04-08
 Portugal hCoV-19/Portugal/PT0075/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G A27751T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_421479
 2020-03-21 2020-04-08
 Portugal hCoV-19/Portugal/PT0076/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_421480
 2020-03-21 2020-04-08
 Portugal hCoV-19/Portugal/PT0077/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_421506
 2020-03-21 2020-04-08
 France hCoV-19/France/IDF3236/2020
 ATTAAAGGTTTATACCTTC1- C241T C3037T C10748T C14408T C15324T A21137G A23403G AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_421594 MT370923
 2020-03-21 2020-04-09
 United States SARS-CoV-2/human/USA/NY-PV09019/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T G23126T A23403G G25563T TGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29765-

EPI_ISL_421596 MT371028
 2020-03-21 2020-04-09
 United States SARS-CoV-2/human/USA/NY-PV09021/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_421597 MT370977
 2020-03-21 2020-04-09
 United States SARS-CoV-2/human/USA/NY-PV09023/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C1059T C3037T C4113T C11916T C14408T C18998T A23403G G25563T G29540A AGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29776-

EPI_ISL_421598 MT371035
 2020-03-21 2020-04-09
 United States SARS-CoV-2/human/USA/NY-PV09025/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29239A G29540A AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_421599 MT370991
 2020-03-21 2020-04-09
 United States SARS-CoV-2/human/USA/NY-PV09028/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C1059T C3037T C10851T C14408T C22530T A23403G G25305T G25563T CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_421600 MT371019
 2020-03-21 2020-04-09
 United States SARS-CoV-2/human/USA/NY-PV09029/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G C23453T G25563T AGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29776-

EPI_ISL_421602 MT370964
 2020-03-21 2020-04-09
 United States SARS-CoV-2/human/USA/NY-PV09032/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G G25563T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_421603 MT370983
 2020-03-21 2020-04-09
 United States SARS-CoV-2/human/USA/NY-PV09037/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T C1059T C1917T C3037T C14408T A17615G A23403G G25563T GTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29759-

EPI_ISL_421604 MT370947
 2020-03-21 2020-04-09
 United States SARS-CoV-2/human/USA/NY-PV09039/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTT1- C241T C1059T C3037T C11916T C14408T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_421606 MT370984
 2020-03-21 2020-04-09
 United States SARS-CoV-2/human/USA/NY-PV09043/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C1059T C3037T C14408T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_421607 MT370979
 2020-03-21 2020-04-09
 United States SARS-CoV-2/human/USA/NY-PV09044/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T C1059T C3037T C14408T A19883G A23403G G25563T TAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29775-

EPI_ISL_421608 MT371023
 2020-03-21 2020-04-09
 United States SARS-CoV-2/human/USA/NY-PV09046/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_421611 MT370962
 2020-03-21 2020-04-09
 United States SARS-CoV-2/human/USA/NY-PV09056/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G G25563T TAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29775-

EPI_ISL_421634 MT371013
 2020-03-21 2020-04-09
 United States SARS-CoV-2/human/USA/NY-PV09102/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_421635 MT370927
 2020-03-21 2020-04-09
 United States SARS-CoV-2/human/USA/NY-PV09103/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATC1- C241T C1059T C1917T C3037T C14408T G20005A A23403G G25563T CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_422488 MT371000
 2020-03-21 2020-04-11
 United States SARS-CoV-2/human/USA/NY-PV09045/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_422489 MT371009
 2020-03-21 2020-04-11
 United States SARS-CoV-2/human/USA/NY-PV09057/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_422523 MT370954
 2020-03-21 2020-04-11
 United States SARS-CoV-2/human/USA/NY-PV09156/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C8782T T9477A T28144C GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_422528 MT370931
 2020-03-21 2020-04-11
 United States SARS-CoV-2/human/USA/NY-PV09164/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T C1059T C3037T C14408T A14747G A20755C A23403G G25563T TAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29775-

EPI_ISL_422554 MT370969
 2020-03-21 2020-04-11
 United States SARS-CoV-2/human/USA/NY-PV09199/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A ACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29768-

EPI_ISL_422556 MT370938
 2020-03-21 2020-04-11
 United States SARS-CoV-2/human/USA/NY-PV09301/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C3037T C14408T C18877T A23403G G25563T T29010C GTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29759-

EPI_ISL_422557 MT370967
 2020-03-21 2020-04-11
 United States SARS-CoV-2/human/USA/NY-PV09303/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C3037T C14408T A14912G A23403G G25563T AATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29770-

EPI_ISL_422558 MT371033
 2020-03-21 2020-04-11
 United States SARS-CoV-2/human/USA/NY-PV09304/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G G25563T GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_422639 LR877936
 2020-03-21 2020-04-11
 Netherlands hCoV-19/Netherlands/Gelderland_11/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A C3821A C8316T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422687 LR877754
 2020-03-21 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_152/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C14786T A23403G GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422689 LR877755
 2020-03-21 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_154/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- C17410T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422690 LR877768
 2020-03-21 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_155/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- C16762T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422691 LR877762
 2020-03-21 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_156/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18828T G20275A A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422692 LR877766
 2020-03-21 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_157/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422695 LR877758
 2020-03-21 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_160/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G20275A A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422696 LR877753
 2020-03-21 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_161/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G24368T G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422697 LR877770
 2020-03-21 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_162/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18788T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422698 LR877771
 2020-03-21 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_163/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A11438G C14408T C21648T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422699 LR877769
 2020-03-21 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_164/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A11438G C14408T C21648T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422700 LR877785
 2020-03-21 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_165/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G24077T G28985T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422701 LR877778
 2020-03-21 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_166/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422702 LR877784
 2020-03-21 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_167/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T658C C3037T C14408T A23403G A24862G G25563C C28629T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422861 LR877942
 2020-03-21 2020-04-11
 Netherlands hCoV-19/Netherlands/NoordBrabant_102/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_423149
 2020-03-21 2020-04-12
 United Kingdom hCoV-19/England/20134060904/2020
 A2480G C2558T G11083T C14805T C24964T G26144T

EPI_ISL_423632
 2020-03-21 2020-04-12
 United Kingdom hCoV-19/England/20130052804/2020
 C241T C3037T C12974Y A13640G C14408T A23403G G25429T

EPI_ISL_424028
 2020-03-21 2020-04-12
 United Kingdom hCoV-19/England/20129035304/2020
 C241T C3037T C3373A C4246T C9246T C11195T C14408T A23403G GGG28881AAC

EPI_ISL_424126
 2020-03-21 2020-04-12
 United Kingdom hCoV-19/England/20129163604/2020
 C241T C3037T G4080K G4280K G6116R G10097A C14408T A23403G C23731T T24892Y G28580T GGG28881AAC

EPI_ISL_424193 MT326118
 2020-03-21 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1728/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C241T C1059T C3037T C14408T A23403G G25563T G29553A A29903-

EPI_ISL_424195 MT326120
 2020-03-21 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1726/2020
 ATTAAAGGTTTATACCTTCCCAGG1- AAC34HTT C241T C1059T C3037T C11916T C14408T G17679T A23403G G25563T A27515G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_424223 MT326148
 2020-03-21 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1744/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAA1- A1098G C8782T C17747T A17858G C18060T T28144C AAAAA29899-

EPI_ISL_424224 MT326149
 2020-03-21 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1745/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCA1- A4236G A8031G G11083T C14805T T25655C G26144T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_424225 MT326150
 2020-03-21 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1707/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- A35T C37H C241T T833C C1059T C3037T C11455T C14408T A23403G G25563T C27964T A29903-

EPI_ISL_424226 MT326151
 2020-03-21 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1705/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGAC1- A1098G C8782T C17747T A17858G C18060T G25606T T28144C AA29902-

EPI_ISL_424227 MT326152
 2020-03-21 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1706/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACA1- C241T C1059T C3037T C12880T C14408T A23403G G25563T G29553A -29904ANANANANANAA

EPI_ISL_424228 MT326153
 2020-03-21 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1702/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAAC19- C37T C40T C8782T C17747T A17858G C18060T T28144C -29904AAA

EPI_ISL_424229 MT326154
 2020-03-21 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1724/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C241T C1059T C3037T C13608T C14408T A23403G G25563T G29553A AAAAAAAAA29895-

EPI_ISL_424231 MT326156
 2020-03-21 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1731/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA A229C TCT232CAC C832T T3160C C8782T C17747T A17858G C18060T T28144C G29744T A29866G A29869G A29903-

EPI_ISL_424233 MT326158
 2020-03-21 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1772/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACT1- C241T C3037T C14408T A20268G A23403G G25785C G29734C -29904ANANA

EPI_ISL_424234 MT326159
 2020-03-21 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1722/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C241T C1059T C3037T G7560A C14408T G19999T G21452T A23403G G25563T GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_424235 MT326160
 2020-03-21 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1733/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATA1- C241T C1059T C3037T G6653A C14408T A23403G A25060G G25563T G29553A

EPI_ISL_424236 MT326161
 2020-03-21 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1732/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGT1- C1059T C3037T C14408T A23403G G25563T

EPI_ISL_424237 MT326162
 2020-03-21 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1739/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C241T C1059T C3037T C6040T C14408T A23403G G25563T AAAAAAAAAAA29893-

EPI_ISL_424238 MT326163
 2020-03-21 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1741/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAA1- C1059T C3037T C14408T G16912T A23403G G25563T G29553A G29864A TG29867AA C29870A

EPI_ISL_424239 MT326164
 2020-03-21 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1750/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- A34H C241T C1059T C3037T G7560A C14408T G19999T G21452T A23403G G25563T A29903-

EPI_ISL_424241 MT326166
 2020-03-21 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1735/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAA1- C1929T C5784T C8782T C17747T A17858G C18060T C20646T C23525T G26730A T28144C A29866G GA29868VT A29903-

EPI_ISL_424242 MT326167
 2020-03-21 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1753/2020
 ATTA1- A5C G7T AACC34HTHH C241T C1059T C2716T C3037T C14408T G16912T A23403G G25563T G26775T G29553A A29903H

EPI_ISL_424243 MT326168
 2020-03-21 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1756/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATA1- C8782T C17747T A17858G C18060T T28144C G29864A TG29867AV C29870H

EPI_ISL_424245 MT326170
 2020-03-21 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1762/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCA1- C1059T C3037T C14408T A23403G G25563T G29553A A29903-

EPI_ISL_424246 MT326171
 2020-03-21 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1758/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C241T C1059T C3037T C14408T A23403G G25563T G29553A -29904AAAAAA

EPI_ISL_424247 MT326172
 2020-03-21 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1760/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C8782T G14772T C17747T A17858G C18060T T28144C TG29867AA

EPI_ISL_424253 MT326089
 2020-03-21 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1792/2020
 ATTAAAGGTTTATACCTTC1- AACC34TTTH C241T C3037T C14408T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_424254 MT326090
 2020-03-21 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1796/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTG1- C241T C3037T C14408T G15414A G17964A A23403G G23405T C23575T

EPI_ISL_424261 MT326097
 2020-03-21 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1784/2020
 ATTAAAGG1- AACC34TTTA C8782T C17747T A17858G C18060T G22984A T27384C T28144C GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_424285 MT326040
 2020-03-21 2020-04-12
 United States SARS-CoV-2/human/USA/OR-UW-1851/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C8782T C17747T A17858G C18060T T28144C CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_424300 MT326055
 2020-03-21 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1879/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T C3037T C6040T C14408T A23403G G25563T -29904GANANA

EPI_ISL_424346
 2020-03-21 2020-04-13
 United States hCoV-19/USA/AK-PHL037/2020
 ATTAAAGGTTTAT1- T2266C C6027T A10236G G11083T C14805T T17247C G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_424492
 2020-03-21 2020-04-13
 Iceland hCoV-19/Iceland/469/2020
 C5142T G11083T C14805T T17247C G26144T

EPI_ISL_424493
 2020-03-21 2020-04-13
 Iceland hCoV-19/Iceland/470/2020
 C5142T G11083T C14805T T17247C G26144T

EPI_ISL_424517
 2020-03-21 2020-04-13
 Iceland hCoV-19/Iceland/495/2020
 C241T C3037T C5730T G10870T C14408T G15850T A23403G G23587T GGG28881AAC

EPI_ISL_424518
 2020-03-21 2020-04-13
 Iceland hCoV-19/Iceland/496/2020
 G370T C5142T G11083T C14805T T17247C G26144T

EPI_ISL_424519
 2020-03-21 2020-04-13
 Iceland hCoV-19/Iceland/497/2020
 C5142T G11083T C14805T T17247C G26144T

EPI_ISL_424520
 2020-03-21 2020-04-13
 Iceland hCoV-19/Iceland/498/2020
 C5142T G11083T C14805T T17247C G26144T

EPI_ISL_424521
 2020-03-21 2020-04-13
 Iceland hCoV-19/Iceland/499/2020
 C5142T G11083T C14805T T17247C G26144T

EPI_ISL_424522
 2020-03-21 2020-04-13
 Iceland hCoV-19/Iceland/500/2020
 C5142T G11083T C14805T T17247C G26144T

EPI_ISL_424523
 2020-03-21 2020-04-13
 Iceland hCoV-19/Iceland/501/2020
 C5142T G11083T C14805T T17247C G26144T

EPI_ISL_424524
 2020-03-21 2020-04-13
 Iceland hCoV-19/Iceland/502/2020
 C5142T G11083T C14805T T17247C G26144T

EPI_ISL_424525
 2020-03-21 2020-04-13
 Iceland hCoV-19/Iceland/503/2020
 C241T C3037T C14408T T20064C A23403G G25429T

EPI_ISL_424526
 2020-03-21 2020-04-13
 Iceland hCoV-19/Iceland/504/2020
 C241T C3037T C14408T T19839C A23403G GGG28881AAC

EPI_ISL_424527
 2020-03-21 2020-04-13
 Iceland hCoV-19/Iceland/505/2020
 C241T C3037T C3253T C14408T A23403G C24054T A25958G C27046T GGG28881AAC

EPI_ISL_424528
 2020-03-21 2020-04-13
 Iceland hCoV-19/Iceland/506/2020
 C241T C3037T C14408T G22225A A23403G C26801G

EPI_ISL_424535
 2020-03-21 2020-04-13
 Iceland hCoV-19/Iceland/513/2020
 C241T C3037T A11839G T12015G C14408T G16377T T19839C A23403G G23856A GGG28881AAC

EPI_ISL_424536
 2020-03-21 2020-04-13
 Iceland hCoV-19/Iceland/514/2020
 C241T C3037T C3253T C14408T A23403G C24054T A25958G C27046T GGG28881AAC

EPI_ISL_425130 MT582454
 2020-03-21 2020-04-14
 Germany SARS-CoV-2/human/DEU/NRW-46/2020
 G1397A G20887A C21627T T28688C C28830T G29742T

EPI_ISL_425525
 2020-03-21 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10E2ED/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T

EPI_ISL_425526
 2020-03-21 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10E2FC/2020
 C241T C3037T C14408T T15351G G21518T A23403G

EPI_ISL_425530
 2020-03-21 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10E335/2020
 G1440A G2891A C10507T

EPI_ISL_425532
 2020-03-21 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10E362/2020
 C241T C3037T A7877G C14408T C16289T A23403G G25429T

EPI_ISL_425533
 2020-03-21 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10E371/2020
 C241T C3037T A7877G T11798C C14408T C16289T A23403G G25429T

EPI_ISL_425535
 2020-03-21 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10E39F/2020
 A1412G A1515G C9223T G11083T C14805T T17247C G26144T

EPI_ISL_425536
 2020-03-21 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10E3AE/2020
 C241T C3037T A7877G T11798C C14408T C16289T A23403G G25429T

EPI_ISL_425537
 2020-03-21 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10E3BD/2020
 A1412G A1515G C9223T G11083T C14805T T17247C G26144T

EPI_ISL_425869
 2020-03-21 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB071/2020
 

EPI_ISL_425875
 2020-03-21 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB083/2020
 C241T C3037T T14079C C14408T A23403G GGG28881AAC

EPI_ISL_425876
 2020-03-21 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB084/2020
 C241T C3037T C14408T C22879A A23403G C25844T

EPI_ISL_425877
 2020-03-21 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB085/2020
 C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_425878
 2020-03-21 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB086/2020
 A2480G C2558T T10480C G11083T C14805T G21830T T26130C G26144T C27559T

EPI_ISL_425879
 2020-03-21 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB087/2020
 C241T C3037T C14408T C16289T A23403G G25429T

EPI_ISL_425880
 2020-03-21 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB089/2020
 C3787T C16362T

EPI_ISL_425881
 2020-03-21 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB090/2020
 

EPI_ISL_425882
 2020-03-21 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB091/2020
 

EPI_ISL_425885
 2020-03-21 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB095/2020
 

EPI_ISL_425891
 2020-03-21 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB101/2020
 C241T C3037T G6710T C14408T A23403G GGG28881AAC

EPI_ISL_426057 MT345803
 2020-03-21 2020-04-14
 United States SARS-CoV-2/human/USA/ID-UW-2127/2020
 ATTAAA1- C241T C3037T C5239T C8730T C14408T T15264C A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_426077
 2020-03-21 2020-04-14
 United States hCoV-19/USA/UN-UW-2069/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T A29901G A29903G

EPI_ISL_426300
 2020-03-21 2020-04-15
 United States hCoV-19/USA/NY-Wadsworth-26088-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426302
 2020-03-21 2020-04-15
 United States hCoV-19/USA/NY-Wadsworth-26856-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C2676T T6329C C8782T A22606T T28144C G28878A G29742A TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426356
 2020-03-21 2020-04-16
 Czech Republic hCoV-19/Czech Republic/Seq3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCAT1- C241T C3037T C14408T A21643C A23403G GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_426661 MT451244
 2020-03-21 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC353/2020
 ATT1- C241T C3037T C8660T C14408T A23403G GGG28881AAC

EPI_ISL_426662 MT451245
 2020-03-21 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC354/2020
 ATTA1- C241T C3037T C4002T G10097A C13536T C14184T C14408T C21058T A23403G C23731T G28086T A28811G GGG28881AAC

EPI_ISL_426663 MT451246
 2020-03-21 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC355/2020
 AT1- G957A A1547G C8782T C17747T A17858G C18060T T28144C

EPI_ISL_426664 MT451247
 2020-03-21 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC356/2020
 AT1- C241T C3037T C14408T A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_426665 MT451248
 2020-03-21 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC357/2020
 A1- C241T C379A C1059T C3037T C14408T A23403G G25563T

EPI_ISL_427279
 2020-03-21 2020-04-17
 United States hCoV-19/USA/MN-MDH-140/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T G29734A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_427280
 2020-03-21 2020-04-17
 United States hCoV-19/USA/MN-MDH-141/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17747T A17858G C18060T T28144C C29149T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428275
 2020-03-21 2020-04-20
 United States hCoV-19/USA/WI-UW-179/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C9510T G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428276
 2020-03-21 2020-04-20
 United States hCoV-19/USA/WI-UW-180/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428292
 2020-03-21 2020-04-20
 United States hCoV-19/USA/WI-UW-196/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428690
 2020-03-21 2020-04-21
 Spain hCoV-19/Spain/Madrid_H12_27/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T G2293T C3037T C14408T A20268G A23403G G29734C -29826T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_428691
 2020-03-21 2020-04-21
 Spain hCoV-19/Spain/Madrid_H12_28/2020
 ATTAAAGGTTTATACCTTCCCAG1- T25G C8782T T9477A C14805T A22151G G25979T C28087T T28144C C28657T C28863T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_428705
 2020-03-21 2020-04-21
 Spain hCoV-19/Spain/Madrid_H12_3506/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10078T C12923T C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428706
 2020-03-21 2020-04-21
 Spain hCoV-19/Spain/Madrid_H12_3607/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16699T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428708
 2020-03-21 2020-04-21
 Spain hCoV-19/Spain/Madrid_H12_3809/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13356T C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428709
 2020-03-21 2020-04-21
 Spain hCoV-19/Spain/Madrid_H12_3910/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G G22132A A23403G G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428720
 2020-03-21 2020-04-21
 Turkey hCoV-19/Turkey/HSGM-8001/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T G12248T C14408T C18877T A23403G T23599A G25563T C26735T

EPI_ISL_428856
 2020-03-21 2020-04-22
 Gambia hCoV-19/Gambia/GC19-026/2020
 C6312A G11083T C13730T C23929T C28311T

EPI_ISL_429126
 2020-03-21 2020-04-23
 Sweden hCoV-19/Sweden/20-08320/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T

EPI_ISL_429172
 2020-03-21 2020-04-23
 Thailand hCoV-19/Thailand/Bangkok-0036/2020
 A1- C241T C3037T C14408T A23403G C27046T GGG28881AAC C29666T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_429197
 2020-03-21 2020-04-23
 Switzerland hCoV-19/Switzerland/GE0199/2020/P1
 ATTAAAGGT1- C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_429203
 2020-03-21 2020-04-23
 Switzerland hCoV-19/Switzerland/GE1736/2020
 ATTAAAG1- C241T C3037T C14408T A23403G GGG28881AAC T29148C

EPI_ISL_429567
 2020-03-21 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI490/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429990 MT598171
 2020-03-21 2020-04-24
 United States SARS-CoV-2/human/USA/SEARCH-0007-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- GTTATG515- C1059T C3037T C5467T C14408T A23403G G25563T T27863C T28135C CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_430137 MT627607
 2020-03-21 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S283/2020
 T5797C C8782T G16846A C17747T A17858G C18060T A27525G T27832C T28144C G28646A

EPI_ISL_430264 MT632497
 2020-03-21 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S226/2020
 C241T C379A C1059T T2244C C3037T G10753T C14408T A23403G G25563T

EPI_ISL_430464
 2020-03-21 2020-04-27
 India hCoV-19/India/S3/2020
 ATTAAAGGTTTAT1- C241T C3037T C14408T A23403G G24933T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_430468
 2020-03-21 2020-04-27
 India hCoV-19/India/S2/2020
 ATTAAAGGTTTATACC1- C241T C3037T C14408T A23403G G24933T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_431779
 2020-03-21 2020-04-29
 China hCoV-19/Fujian/IM3520008T/2020
 ATTAAAGGTTTATACCTTCC1- C241T C3037T -6697T T11638C C14408T A23403G GGG28881AAC C29708T GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_433281
 2020-03-21 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR284/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C12710T C28854T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_433284
 2020-03-21 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR338/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C3787T C16362T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_433287
 2020-03-21 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR375/2020
 C241T C3037T C14408T C22879A A23403G

EPI_ISL_434682
 2020-03-21 2020-05-01
 United States hCoV-19/USA/MD-HP00016/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_434828
 2020-03-21 2020-05-01
 United States hCoV-19/USA/TX-HMH128/2020
 T490A C3177T C6040T C8782T C8950T G12478A T18736C C24034T T26729C G28077C T28144C C28896G C29451T A29700G

EPI_ISL_434829
 2020-03-21 2020-05-01
 United States hCoV-19/USA/TX-HMH129/2020
 C302T T490A C3177T C6040T C8782T C8950T G12478A T18736C C24034T T26729C G28077C T28144C C28896G C29451T A29700G

EPI_ISL_434831
 2020-03-21 2020-05-01
 United States hCoV-19/USA/TX-HMH131/2020
 T490A C2037T C3177T C6040T C8782T C8950T G12478A T18736C C24034T T26729C G27952T G28077C T28144C C28896G C29451T A29700G

EPI_ISL_434834
 2020-03-21 2020-05-01
 United States hCoV-19/USA/TX-HMH134/2020
 C241T C3037T C14408T A23403G C23707T C29441G

EPI_ISL_434839
 2020-03-21 2020-05-01
 United States hCoV-19/USA/TX-HMH140/2020
 C241T C1059T C3037T C10319T C14408T A23403G G25563T C27964T

EPI_ISL_434840
 2020-03-21 2020-05-01
 United States hCoV-19/USA/TX-HMH141/2020
 T490A C3177T C6040T C8782T C8950T G12478A T18736C C24034T T26729C G28077C T28144C C28896G C29451T A29700G

EPI_ISL_434841
 2020-03-21 2020-05-01
 United States hCoV-19/USA/TX-HMH142/2020
 C241T C1059T C3037T C14408T C16260T A23403G G25563T C28821A

EPI_ISL_435426
 2020-03-21 2020-05-04
 Hungary hCoV-19/Hungary/SRC-00105w/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_435671
 2020-03-21 2020-05-05
 United States hCoV-19/USA/CA-SCCPHD-UC192/2020
 G25785T C26204T G27204T

EPI_ISL_435676
 2020-03-21 2020-05-05
 Brunei hCoV-19/Brunei/4/2020
 ATTA1- C6312A T7621C G11083T C13730T C23929T A24696W T25322Y A25335R C28311T AAAAAAAAAAAA29892-

EPI_ISL_435677
 2020-03-21 2020-05-05
 Brunei hCoV-19/Brunei/5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAG1- C6312A T7621C G11083T C13730T C18115T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_436045
 2020-03-21 2020-05-05
 United States hCoV-19/USA/VI-CDC-1999/2020
 C241T C1059T C3037T C9724T T10472Y T11974C C14408T A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_436724
 2020-03-21 2020-05-07
 Italy hCoV-19/Italy/TE5827/2020
 A39G T42C C44A C48M TA54YM C241T AC538WM C3037T G7360T C14408T G16117T A23403G G25720T GGG28881AAC A29903-

EPI_ISL_436830 MT439260
 2020-03-21 2020-05-06
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20153/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T C3037T C14408T T21616C A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_437360
 2020-03-21 2020-05-08
 United States hCoV-19/USA/MN-MDH-115/2020
 ATTAAAGG1- C241T C2416T C3037T C14408T A23403G C25169T G25563T CGAGGCCACGCGGAGTACGAT29733- CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_437562
 2020-03-21 2020-05-11
 United States hCoV-19/USA/CA-SR0248/2020
 C241T C1059T C3037T C14408T A23403G G25563T C29870A

EPI_ISL_438076
 2020-03-21 2020-05-12
 Austria hCoV-19/Austria/CeMM0246/2020
 C241T C3037T C14408T T22521K A23403G C27046T GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_438077
 2020-03-21 2020-05-12
 Austria hCoV-19/Austria/CeMM0247/2020
 C241T C3037T C5183T C14408T C16726T T22521K A23403G T27900C GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_438078
 2020-03-21 2020-05-12
 Austria hCoV-19/Austria/CeMM0248/2020
 T514C C17410T T22521K G24095K TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_438079
 2020-03-21 2020-05-12
 Austria hCoV-19/Austria/CeMM0249/2020
 C241T C3037T C14408T T22521K A23403G A24862G AAAAAAAAAAAAA29891-

EPI_ISL_438080
 2020-03-21 2020-05-12
 Austria hCoV-19/Austria/CeMM0250/2020
 C241T C3037T C10202Y C14408T T22521K A23403G C27046T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_438081
 2020-03-21 2020-05-12
 Austria hCoV-19/Austria/CeMM0251/2020
 C241T C3037T C14408T T22521K A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_438082
 2020-03-21 2020-05-12
 Austria hCoV-19/Austria/CeMM0252/2020
 C241T C1059T C3037T G5847K C5849Y C14408T T22521K A23403G T25414C G25563T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_438225
 2020-03-21 2020-05-12
 United States hCoV-19/USA/MD-HP00032/2020
 A2480G C2558T G11083T C14805T C18508T G26144T

EPI_ISL_439049
 2020-03-21 2020-05-12
 United Kingdom hCoV-19/Scotland/CVR319/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C988T G11083T C14805T T17247C G26144T C29585T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_439056
 2020-03-21 2020-05-12
 United Kingdom hCoV-19/Scotland/CVR337/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_439063
 2020-03-21 2020-05-12
 United Kingdom hCoV-19/Scotland/CVR355/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_439966
 2020-03-21 2020-05-12
 United Kingdom hCoV-19/England/BRIS-121D4D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G11083T C14408T A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_440109
 2020-03-21 2020-05-12
 United Kingdom hCoV-19/England/CAMB-7333C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A3116G C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_440144
 2020-03-21 2020-05-12
 United Kingdom hCoV-19/England/CAMB-72FEE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G T25202K G28086T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_440170
 2020-03-21 2020-05-12
 United Kingdom hCoV-19/England/CAMB-73202/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A T13216G C14408T A23403G C23731T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_440183
 2020-03-21 2020-05-12
 United Kingdom hCoV-19/England/CAMB-73062/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G T25202K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_440208
 2020-03-21 2020-05-12
 United Kingdom hCoV-19/England/CAMB-73071/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1684T C3037T C4002T G10097A C13536T C14184T C14408T C21058T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_440282
 2020-03-21 2020-05-12
 United Kingdom hCoV-19/England/CAMB-731F6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G160T C241T C2937T C3037T C14408T A20268G A23403G T25202K

EPI_ISL_441373
 2020-03-21 2020-05-12
 United Kingdom hCoV-19/Northern Ireland/NIRE-102076/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- ATG1605- C6696T C11001T T22729C

EPI_ISL_441375
 2020-03-21 2020-05-12
 United Kingdom hCoV-19/Northern Ireland/NIRE-102094/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_441377
 2020-03-21 2020-05-12
 United Kingdom hCoV-19/Northern Ireland/NIRE-1020B2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- AGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGA187- ATG1605- C6696T C11001T T22729C C25844T G28793K

EPI_ISL_441378
 2020-03-21 2020-05-12
 United Kingdom hCoV-19/Northern Ireland/NIRE-1020C1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- ATG1605- C17999T G26065T

EPI_ISL_441405
 2020-03-21 2020-05-12
 United Kingdom hCoV-19/Northern Ireland/NIRE-10236E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23403G GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_441406
 2020-03-21 2020-05-12
 United Kingdom hCoV-19/Northern Ireland/NIRE-10237D/2020
 ATTAAAGGTTTA1- ATG1605- C6696T C11001T C13499T T22729C G25567T C25844T

EPI_ISL_443217
 2020-03-21 2020-05-12
 Singapore hCoV-19/Singapore/125/2020
 T120Y C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAA29892-

EPI_ISL_443220
 2020-03-21 2020-05-12
 Singapore hCoV-19/Singapore/128/2020
 C241T A290T C850T C3037T C11224T C14408T A23403G C26753T GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_443269
 2020-03-21 2020-05-12
 France hCoV-19/France/B5344/2020
 C241T C1059T C3037T T13006C C14408T A23403G G25563T C25688T G28378T AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_444276 MT479225
 2020-03-21 2020-05-13
 Taiwan SARS-CoV-2/human/TWN/CGMH-CGU-23/2020
 A1- C241T C3037T C14408T C18877T A23403G G25563T

EPI_ISL_444586
 2020-03-21 2020-05-14
 United States hCoV-19/USA/IL-NM098/2020
 C241T AAGTCATTT686- C1059T C3037T C14408T A23403G G25563T

EPI_ISL_444588
 2020-03-21 2020-05-14
 United States hCoV-19/USA/IL-NM0103/2020
 C241T T490A C3177T T18736C A23403G T26729C G28077C T28144C A29567C A29700G

EPI_ISL_444600
 2020-03-21 2020-05-14
 United States hCoV-19/USA/IL-NM0117/2020
 C241T C1059T C3037T A10987G C14408T A23403G G25563T

EPI_ISL_444601
 2020-03-21 2020-05-14
 United States hCoV-19/USA/IL-NM0118/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_444603
 2020-03-21 2020-05-14
 United States hCoV-19/USA/IL-NM0120/2020
 T490A C3177T C8782T C9113T T18736C C21648T C24034T T26729C C27635T G28077C T28144C A29567C A29700G

EPI_ISL_444604
 2020-03-21 2020-05-14
 United States hCoV-19/USA/IL-NM0121/2020
 T490A C1077T C3177T C8782T C9113T T18736C C21648T C24034T T26729C C27635T G28077C T28144C A29567C A29700G

EPI_ISL_444605
 2020-03-21 2020-05-14
 United States hCoV-19/USA/IL-NM0122/2020
 C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T

EPI_ISL_444607
 2020-03-21 2020-05-14
 United States hCoV-19/USA/IL-NM0125/2020
 C241T C3037T C14408T C22450T A23403G C29463T

EPI_ISL_444608
 2020-03-21 2020-05-14
 United States hCoV-19/USA/IL-NM0126/2020
 C241T C1059T C3037T C11916T C14408T C16260T A23403G G25563T

EPI_ISL_444609
 2020-03-21 2020-05-14
 United States hCoV-19/USA/IL-NM0127/2020
 C241T C1059T C3037T C5183T C14408T A23403G G25563T

EPI_ISL_444980
 2020-03-21 2020-05-14
 Spain hCoV-19/Spain/Barcelona_VH4964/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C241T C3037T C7735T C14408T C16393T A20268G C22295T A23403G G29734C

EPI_ISL_444981
 2020-03-21 2020-05-14
 Spain hCoV-19/Spain/Barcelona_VH5081/2020
 ATTAAA1- C241T C3037T C14408T A20268G A23403G

EPI_ISL_444982
 2020-03-21 2020-05-14
 Spain hCoV-19/Spain/Barcelona_VH5325/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C241T C3037T C14408T A14487G A20268G A23403G G28325T G29734C

EPI_ISL_445077
 2020-03-21 2020-05-14
 United States hCoV-19/USA/MN-UMGC-7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- A30T C241T C1059T C3037T C11224T C14408T C15654T A23403G G25563T C28253T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_445080
 2020-03-21 2020-05-14
 United States hCoV-19/USA/TX_GCID_192000072/2020
 ATTAAAGG1- C241T C3037T C14408T C14786T A23403G GGG28881AAC AAA29876TGG A29881G A29886G AAAAAAAAAA29894-

EPI_ISL_445164
 2020-03-21 2020-05-15
 United States hCoV-19/USA/CA-SR0310/2020
 C241T C1059T C3037T C14408T C16762T A23403G G25563T

EPI_ISL_445290
 2020-03-21 2020-05-15
 Chile hCoV-19/Chile/Punta_Arenas_9/2020
 A1T T3A A5T C241T C1059T C3037T C14408T A23403G G25563T TGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29840-

EPI_ISL_445291
 2020-03-21 2020-05-15
 Chile hCoV-19/Chile/Punta_Arenas_10/2020
 A1GGTTTATGATCCTTTGCAACCTGAATTAGACTCA A4C TT9-A T76W T78K C241T C1059T C3037T C14408T A23403G G25563T ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_445294
 2020-03-21 2020-05-15
 Chile hCoV-19/Chile/Punta_Arenas_13/2020
 ATTAAAGGTTTATACCTTCCCAG1- A27C C241T C1059T C3037T G5069K C14408T A23403G G25563T ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_445295
 2020-03-21 2020-05-15
 Chile hCoV-19/Chile/Punta_Arenas_14/2020
 A1G -A3TTATGATCCTTTGCAACCG C241T C3037T C14408T A23403G C25350T T29859C G29862A G29868A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_445296
 2020-03-21 2020-05-15
 Chile hCoV-19/Chile/Coyhaique_1/2020
 -T2CAACACAGTTTATGATCCTTTGCAACCG AGG6TKR C241T C3037T A10994G C14408T A23403G C25350T ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_445297
 2020-03-21 2020-05-15
 Chile hCoV-19/Chile/Rancagua_7/2020
 A1T -6T C241T C3037T C8389T C14408T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_445302
 2020-03-21 2020-05-15
 Chile hCoV-19/Chile/Santiago_23/2020
 A1T T3A A5T C241T C3037T C14408T A23403G GGG28881AAC TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_445325
 2020-03-21 2020-05-15
 Chile hCoV-19/Chile/Santiago_46/2020
 A1GGCGTTGCACTTCTTGCTGTTTTTCATAGCGCTTCCAAAA T3C A5C GG7AA C241T C3037T C10507T A12506R C14408T C18877T A23403G G25563T TGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29840-

EPI_ISL_445326
 2020-03-21 2020-05-15
 Chile hCoV-19/Chile/Santiago_47/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C44G C241T C3037T C14408T C17288T A20268G A23403G ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_445327
 2020-03-21 2020-05-15
 Chile hCoV-19/Chile/Santiago_48/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C3037T C4655T C8299T C14408T A23403G C29144T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_445356
 2020-03-21 2020-05-15
 Chile hCoV-19/Chile/Santiago_60/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTC1- T47C G11083T G12817R C14805T C23243Y C23707T G26144T T27384C TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_445366
 2020-03-21 2020-05-15
 Chile hCoV-19/Chile/Santiago_70/2020
 T2A A4T C241T C3037T C14408T A20268G A23403G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_445367
 2020-03-21 2020-05-15
 Chile hCoV-19/Chile/Santiago_71/2020
 A1T AAAGG4CGGCA C241T C3037T C14408T A23403G G25793T T27299C GGG28881AAC T29148C AAAAAAAAAAAAAAAAAAAAAA29882T

EPI_ISL_447165 MT506679
 2020-03-21 2020-05-16
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20194/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAA29890-

EPI_ISL_447197 MT506664
 2020-03-21 2020-05-16
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20227/2020
 C241T C1059T C3037T C14408T A23403G G25563T C29370Y AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_447216 MT506670
 2020-03-21 2020-05-16
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20246/2020
 C241T C1059T A2863G C3037T C10156T C14408T A23403G G25563T

EPI_ISL_447220 MT506677
 2020-03-21 2020-05-16
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20250/2020
 C241T C1059T C2862T C3037T A5011M C14408T A23403G G25563T

EPI_ISL_447308
 2020-03-21 2020-05-17
 Israel hCoV-19/Israel/701002317/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAA29892-

EPI_ISL_447309
 2020-03-21 2020-05-17
 Israel hCoV-19/Israel/701002314/2020
 C241T C829T C1059T G2095A C3037T G7295T C14408T C16575T G19800T A23403G G25563T AAAAAAAAAAAA29892-

EPI_ISL_447310
 2020-03-21 2020-05-17
 Israel hCoV-19/Israel/701002313/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAA29892-

EPI_ISL_447616
 2020-03-21 2020-05-18
 Taiwan hCoV-19/Taiwan/NTU22/2020
 C241T C1059T C3037T C9510T T14148C C14408T A23403G G25563T G25879T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_450004
 2020-03-21 2020-05-19
 United States hCoV-19/USA/NY-PV09312/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T C1059T C3037T C14408T A23403G G25563T TGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29765-

EPI_ISL_450005
 2020-03-21 2020-05-19
 United States hCoV-19/USA/NY-PV09313/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C1059T C1853T C3037T C14408T A23403G G25563T GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_450006
 2020-03-21 2020-05-19
 United States hCoV-19/USA/NY-PV09314/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C1917T C3037T T6703C C14408T G20005A A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450007
 2020-03-21 2020-05-19
 United States hCoV-19/USA/NY-PV09315/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATC1- C241T C608T AAGTCATTT686- C1059T C3037T C14408T A15147G A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450009
 2020-03-21 2020-05-19
 United States hCoV-19/USA/NY-PV09317/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C1059T C3037T C14408T A23403G G25563T C29679T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_450010
 2020-03-21 2020-05-19
 United States hCoV-19/USA/NY-PV09318/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G G25563T GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_450164
 2020-03-21 2020-05-20
 United States hCoV-19/USA/NY-PV09492/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTT1- C241T C1059T C3037T C11916T C14408T A23403G G25563T G28376T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450166
 2020-03-21 2020-05-20
 United States hCoV-19/USA/NY-PV09494/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C11916T C14408T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450195
 2020-03-21 2020-05-20
 Australia hCoV-19/Australia/SAP039/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- A187G C241T AAGTCATTT686- C3037T C14408T A23403G GTTAATCCAGTA26158-

EPI_ISL_450457 MT499183
 2020-03-21 2020-05-21
 United States SARS-CoV-2/human/USA/CA-CZB-1208/2020
 C8782T C17747T A17858G C18060T T18411C T28144C

EPI_ISL_451082
 2020-03-21 2020-05-23
 Australia hCoV-19/Australia/SAP041/2020
 AT1- C241T C1059T C3037T C14408T C21711T A23403G G25563T

EPI_ISL_451083
 2020-03-21 2020-05-23
 Australia hCoV-19/Australia/SAP042/2020
 C6695A C8782T C17747T A17858G C18060T A24694T T28144C

EPI_ISL_451134
 2020-03-21 2020-05-23
 Australia hCoV-19/Australia/SAP125/2020
 ATTAAAGGT1- G374A C6936T C8782T C17747T A17858G C18060T T28144C

EPI_ISL_451135
 2020-03-21 2020-05-23
 Australia hCoV-19/Australia/SAP126/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C3037T C10851T C14408T G20931T A23403G C23439T G25563T

EPI_ISL_451402
 2020-03-21 2020-05-25
 United States hCoV-19/USA/NY-NYUMC687/2020
 C241T T658C C1059T C3037T C14408T C18457T A23403G G25563T

EPI_ISL_451406
 2020-03-21 2020-05-25
 United States hCoV-19/USA/NY-NYUMC691/2020
 C241T C1059T C3037T C7006T C14408T T15462C A23403G G25563T

EPI_ISL_451408
 2020-03-21 2020-05-25
 United States hCoV-19/USA/NY-NYUMC693/2020
 C241T C1059T C3037T C14408T A23403G G25563T G25630A C27964T

EPI_ISL_451415
 2020-03-21 2020-05-25
 United States hCoV-19/USA/NY-NYUMC700/2020
 C1780T G11083T C14805T G26144T G28842T

EPI_ISL_451420
 2020-03-21 2020-05-25
 United States hCoV-19/USA/NY-NYUMC705/2020
 C241T C1059T C3037T C14408T C18457T A23403G G25563T

EPI_ISL_451434
 2020-03-21 2020-05-25
 United States hCoV-19/USA/NY-NYUMC719/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_451452
 2020-03-21 2020-05-25
 United States hCoV-19/USA/NY-NYUMC737/2020
 C241T C3037T C14408T C18877T A23403G G25563T

EPI_ISL_451455
 2020-03-21 2020-05-25
 United States hCoV-19/USA/NY-NYUMC740/2020
 G199T C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_451457
 2020-03-21 2020-05-25
 United States hCoV-19/USA/NY-NYUMC742/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_451464
 2020-03-21 2020-05-25
 United States hCoV-19/USA/NY-NYUMC749/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_451465
 2020-03-21 2020-05-25
 United States hCoV-19/USA/NY-NYUMC750/2020
 C241T C1059T C3037T C10015T C11916T C14408T C18744T C18998T A23403G G25563T G29540A

EPI_ISL_451479
 2020-03-21 2020-05-25
 United States hCoV-19/USA/NY-NYUMC765/2020
 C241T C344T C1059T C1973T C3037T C14408T A23403G G25563T

EPI_ISL_451967 MT635443
 2020-03-21 2020-05-26
 Russia SARS-CoV-2/human/RUS/SCPM-O-cDNA-05/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTG1- C241T C3037T C14408T G26951T TGCAGAATGAATTCTCGTAACTACATA29612- AAGTAGATGTAGTTAACTTTAATCTCACA29643- TA29672CC T29680C TAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACA29682- TG29765CT AGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTT29776G T29823C G29825A A29827C ATCCCCATGTGATTTTA29833- T29851C G29853A T29858C AGGA29860CAAG TG29867CA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_452120 MT512420
 2020-03-21 2020-05-26
 United States SARS-CoV-2/human/USA/GA-CDC-8816/2020
 C241T C1059T C3037T C14408T C17934T C18647T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_452264
 2020-03-21 2020-05-27
 United States hCoV-19/USA/MI-MDHHS-SC20390/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_452330
 2020-03-21 2020-05-27
 China hCoV-19/Beijing/DT-travelFR01/2020
 C241T C2416T C3037T T8022G A8026T C14322T C14408T T19299G T20891G A23403G G25563T T26038C

EPI_ISL_452356
 2020-03-21 2020-05-27
 China hCoV-19/Beijing/DT-travelUK03/2020
 C241T C3037T T8022G C14408T C16260T G17944T A23403G

EPI_ISL_452485
 2020-03-21 2020-05-27
 Spain hCoV-19/Spain/COV001416/2020
 C241T C3037T G11083T C14408T A20268G A23403G

EPI_ISL_453820
 2020-03-21 2020-05-28
 Portugal hCoV-19/Portugal/PT0104/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC G29734C TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_453822
 2020-03-21 2020-05-28
 Portugal hCoV-19/Portugal/PT0106/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C14408T A23403G GGG28881AAC G29734C TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_453823
 2020-03-21 2020-05-28
 Portugal hCoV-19/Portugal/PT0107/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G C28292A GGG28881AAC G29734C TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_453824
 2020-03-21 2020-05-28
 Portugal hCoV-19/Portugal/PT0108/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C14408T A23403G C25169T GGG28881AAC G29734C TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454130
 2020-03-21 2020-05-28
 Portugal hCoV-19/Portugal/PT0406/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC C29296T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454131
 2020-03-21 2020-05-28
 Portugal hCoV-19/Portugal/PT0407/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454132
 2020-03-21 2020-05-28
 Portugal hCoV-19/Portugal/PT0408/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T G4201T C14408T A23403G G26172A C26527T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454133
 2020-03-21 2020-05-28
 Portugal hCoV-19/Portugal/PT0409/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454134
 2020-03-21 2020-05-28
 Portugal hCoV-19/Portugal/PT0410/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T G4201T C14408T A23403G G26172A C26527T G29798A TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454135
 2020-03-21 2020-05-28
 Portugal hCoV-19/Portugal/PT0411/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- C241T C1059T C3037T C14408T A23403G G25563T CGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29754-

EPI_ISL_454241
 2020-03-21 2020-05-28
 Portugal hCoV-19/Portugal/PT0517/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G G26792T C26892T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454242
 2020-03-21 2020-05-28
 Portugal hCoV-19/Portugal/PT0518/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G A27751T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_455211
 2020-03-21 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_409/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G12550A C14408T A20268G C20740A A23403G G29734C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455212
 2020-03-21 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_410/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G12550A C14408T A20268G C20740A A23403G G29734C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455213
 2020-03-21 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_411/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4586T G12550A C14408T G17808T A20268G C20740A A23403G G29734C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455214
 2020-03-21 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_412/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4586T G12550A C14408T A20268G C20740A A23403G C28253T G29734C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455699
 2020-03-21 2020-06-01
 Vietnam hCoV-19/Vietnam/VNHN_1492/2020
 C241T C3037T T3370A C14408T A23403G GGG28881AAC

EPI_ISL_456195
 2020-03-21 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1192/2020
 C241T C1059T C3037T C14408T C16937T A23403G G25563T A28841G C29421T

EPI_ISL_456197
 2020-03-21 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1272/2020
 C6312A G11083T C13730T C23929T C28311T

EPI_ISL_456198
 2020-03-21 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1273/2020
 C241T C3037T C14408T T19839C A23403G C24099T GGG28881AAC

EPI_ISL_456199
 2020-03-21 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1274/2020
 C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T C29774T

EPI_ISL_456219
 2020-03-21 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1452/2020
 C241T C3037T T11522G C14408T A20268G A23403G C28854T

EPI_ISL_457641
 2020-03-21 2020-06-02
 United Kingdom hCoV-19/England/SHEF-CA354/2020
 C241T C3037T C14408T G15780T A23403G

EPI_ISL_457823 MT646120
 2020-03-21 2020-06-02
 United States SARS-CoV-2/human/USA/DC-HP00137/2020
 C241T C2416T C3037T C14408T A23403G G25563T A28168R

EPI_ISL_457988
 2020-03-21 2020-06-02
 Oman hCoV-19/Oman/RESP-20-4153/2020
 C241T C3037T C4246T G10265A C14408T C16293T A23403G T23482C GGG28881AAC

EPI_ISL_457989
 2020-03-21 2020-06-02
 Oman hCoV-19/Oman/RESP-20-4252/2020
 C241T C3037T C14408T G18859T G21624T A23403G GGG28881AAC

EPI_ISL_457990
 2020-03-21 2020-06-02
 Oman hCoV-19/Oman/RESP-20-4400/2020
 G11083T C14805T T17247C G26144T

EPI_ISL_459860
 2020-03-21 2020-06-04
 Chile hCoV-19/Chile/PuenteAlto-29192/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10507T C14408T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_459975
 2020-03-21 2020-06-05
 Morocco hCoV-19/Morocco/6897/2020
 C241T C3037T C6594T C14408T A20268G A23403G T29726- AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_460052
 2020-03-21 2020-06-05
 United States hCoV-19/USA/MN-MDH-139/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- T490A AAGTCATTT686- C3177T C8782T T18736C G22801T C24034T T26729C C27635T G28077C T28144C A29567C A29700G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_460053
 2020-03-21 2020-06-05
 United States hCoV-19/USA/MN-MDH-148/2020
 ATTA1- C1238T C8782T C16466T C17747T A17858G C18060T T28144C T28924C GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_460146 MT520221
 2020-03-21 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00683/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C2416T C3037T T11526C C14408T A23403G G25563T G26233T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_461029
 2020-03-21 2020-06-06
 Netherlands hCoV-19/Netherlands/Limburg_41/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10956T A11438G C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461030
 2020-03-21 2020-06-06
 Netherlands hCoV-19/Netherlands/Limburg_42/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10956T A11438G C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461149
 2020-03-21 2020-06-06
 Netherlands hCoV-19/Netherlands/NoordBrabant_114/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- C26912T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461247
 2020-03-21 2020-06-06
 Netherlands hCoV-19/Netherlands/Zeeland_1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C11109T C14408T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_462295
 2020-03-21 2020-06-08
 Singapore hCoV-19/Singapore/177/2020
 C241T C1059T C3037T G12514T C14408T G15380T A23403G G25563T AAAAAAAAAAAA29892-

EPI_ISL_462296
 2020-03-21 2020-06-08
 Singapore hCoV-19/Singapore/178/2020
 C241T C678Y C1059T C1555T C3037T T6394C C10319T C14408T A23403G G25563T C27964T AAAAAAAAAAAA29892-

EPI_ISL_462297
 2020-03-21 2020-06-08
 Singapore hCoV-19/Singapore/179/2020
 A5618G C7609T C9474T A29622G AAAAAAAAAAAA29892-

EPI_ISL_462298
 2020-03-21 2020-06-08
 Singapore hCoV-19/Singapore/180/2020
 C2470T G11083T C14805T T17247C C18457Y C21789T G26144T AAAAAAAAAAAA29892-

EPI_ISL_462299
 2020-03-21 2020-06-08
 Singapore hCoV-19/Singapore/181/2020
 T637Y C6312A G11083T C13730T C18167T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_462300
 2020-03-21 2020-06-08
 Singapore hCoV-19/Singapore/182/2020
 C12897T T23487G AAAAAAAAAAAA29892-

EPI_ISL_462301
 2020-03-21 2020-06-08
 Singapore hCoV-19/Singapore/183/2020
 G1440A G2891A G5230K C10507T C12116T C17766T AAAAAAAAAAAA29892-

EPI_ISL_462376
 2020-03-21 2020-06-08
 Singapore hCoV-19/Singapore/258/2020
 C241T C3037T C4276T T8835Y C14408T G15906T T22321Y A23403G GGG28881AAC A29382R AAAAAAAAAAAA29892-

EPI_ISL_462385
 2020-03-21 2020-06-08
 Singapore hCoV-19/Singapore/267/2020
 C241T C3037T T8712Y C14408T C19170T G19509A A23403G G28077T GGG28881AAC G29425S GA29427KR AAAAAAAAAAAA29892-

EPI_ISL_462390
 2020-03-21 2020-06-08
 Singapore hCoV-19/Singapore/272/2020
 C241T C3037T A8580R A10948G C14408T A23403G C27542T GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_462391
 2020-03-21 2020-06-08
 Singapore hCoV-19/Singapore/273/2020
 C241T C3037T C4002T G8457R G10097A C13536T C14408T C21310M A23403G C23731T G28628T GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_462392
 2020-03-21 2020-06-08
 Singapore hCoV-19/Singapore/274/2020
 C241T C1059T C3037T G3351A C14408T A23403G G25563T AAAAAAAAAAAA29892-

EPI_ISL_462396
 2020-03-21 2020-06-08
 Singapore hCoV-19/Singapore/278/2020
 C241T C1059T C3037T C14408T G15760A A23403G G25563T AAAAAAAAAAAA29892-

EPI_ISL_462404
 2020-03-21 2020-06-08
 Singapore hCoV-19/Singapore/286/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T C25782Y G29425S GA29427KR AAAAAAAAAAAA29892-

EPI_ISL_462420
 2020-03-21 2020-06-08
 Singapore hCoV-19/Singapore/302/2020
 A8689R T8712Y C8782T C9811T C12741T C17747T A17858G C18060T C21516Y C21642T A22411R A24694T T28144C AAAAAAAAAAAA29892-

EPI_ISL_462422
 2020-03-21 2020-06-08
 Singapore hCoV-19/Singapore/304/2020
 A2480G C2558T C6151T A8596R T8875Y G11083T C14805T G26144T G28451S G29425S GA29427KR AAAAAAAAAAAA29892-

EPI_ISL_462431
 2020-03-21 2020-06-08
 Singapore hCoV-19/Singapore/313/2020
 A27G G72R C241T C3037T C14408T A23403G G23856K GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_462458
 2020-03-21 2020-06-08
 Bosnia and Herzegovina hCoV-19/Bosnia and Herzegovina/ChVir7352/2020
 ATTAAAGGTT1- C241T C3037T C14408T C15324T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_462459
 2020-03-21 2020-06-08
 Bosnia and Herzegovina hCoV-19/Bosnia and Herzegovina/ChVir7353/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_467965
 2020-03-21 2020-06-16
 United States hCoV-19/USA/CA-SR0438/2020
 C241T GTTATG515- C1059T C3037T C5467T C14408T A23403G G25563T T27863C T28135C

EPI_ISL_467970
 2020-03-21 2020-06-16
 United States hCoV-19/USA/CA-SR0445/2020
 C8782T C17747T A17858G C18060T A24694T T28144C

EPI_ISL_468134
 2020-03-21 2020-06-16
 Romania hCoV-19/Romania/Bucuresti-4105/2020
 A4- C241T C3037T C14408T T19839C A23403G GGG28881AAC -29904AAAAAAAAAA

EPI_ISL_468398 MT628134
 2020-03-21 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1427/2020
 C241T C1059T A2018G C3037T C14408T A23403G G25563T

EPI_ISL_468511 MT628234
 2020-03-21 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1581/2020
 ATT1- C4776T C8782T C17747Y A17858G C18060T G28086K T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_468513 MT628236
 2020-03-21 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1583/2020
 T26897W AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_469225
 2020-03-21 2020-06-18
 Canada hCoV-19/Canada/NL_83/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1918C T2264C C3037T C14408T C18877T A23403G G25563T ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_469227
 2020-03-21 2020-06-18
 Canada hCoV-19/Canada/NL_85/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T C25688T ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_469230
 2020-03-21 2020-06-18
 Canada hCoV-19/Canada/NL_88/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T C25688T ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_469231
 2020-03-21 2020-06-18
 Canada hCoV-19/Canada/NL_89/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T C25688T ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_469232
 2020-03-21 2020-06-18
 Canada hCoV-19/Canada/NL_90/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T C25688T ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_470846
 2020-03-21 2020-06-19
 Australia hCoV-19/Australia/WA29/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_470847
 2020-03-21 2020-06-19
 Australia hCoV-19/Australia/WA30/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C884T G1397A C7164T G8653T G11083T G13639A C20483T T28688C C29421T TTCACCGA29728- G29742T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_470856
 2020-03-21 2020-06-19
 Australia hCoV-19/Australia/WA39/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_471222
 2020-03-21 2020-06-19
 United States hCoV-19/USA/WI-WSLH-200057/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T9477A C14805T TTTGGGTGTTTA21982- G25979T T28144C C28657T C28863T AATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29849-

EPI_ISL_471254
 2020-03-21 2020-06-19
 United States hCoV-19/USA/WI-WSLH-200090/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471255
 2020-03-21 2020-06-19
 United States hCoV-19/USA/WI-WSLH-200091/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475074
 2020-03-21 2020-06-23
 Belgium hCoV-19/Belgium/UGent-114/2020
 C241T C2416T C3037T C14408T A23403G G25563T G26233T

EPI_ISL_475097
 2020-03-21 2020-06-23
 Sweden hCoV-19/Sweden/20-08311/2020
 C241T C3037T C14408T A23403G A26530G

EPI_ISL_475329
 2020-03-21 2020-06-23
 United Kingdom hCoV-19/England/PORT-2D1112/2020
 C241T C3037T C9857T C14408T A23403G A26530G

EPI_ISL_475856
 2020-03-21 2020-06-25
 Austria hCoV-19/Austria/CeMM0428/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A11768T C14408T A23403G G25563T C26681Y G29422T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475955
 2020-03-21 2020-06-25
 Singapore hCoV-19/Singapore/424/2020
 C241T C3037T T8119Y C14408T A23403G A26174M GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_477177
 2020-03-21 2020-06-29
 Singapore hCoV-19/Singapore/159nan/2020
 CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_478553
 2020-03-21 2020-06-30
 United Kingdom hCoV-19/England/NORT-284503/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G6653A C9170T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478555
 2020-03-21 2020-06-30
 United Kingdom hCoV-19/England/NORT-284521/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478556
 2020-03-21 2020-06-30
 United Kingdom hCoV-19/England/NORT-28461F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12241T C14408T G15243T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479275
 2020-03-21 2020-06-30
 United Kingdom hCoV-19/England/SHEF-D14EE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6573T C14408T A23403G C25528T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479912
 2020-03-21 2020-07-01
 Japan hCoV-19/Japan/PG-0212/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C8782T G16381A T17877C T28144C G28878A G29742A ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_479941
 2020-03-21 2020-07-01
 Japan hCoV-19/Japan/PG-0256/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- G621T C11752T C25665T C26447T TTA27698- T28912C ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_479982
 2020-03-21 2020-07-01
 Japan hCoV-19/Japan/PG-0307/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- G3179A C6982T C8782T C17474T T28144C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_479983
 2020-03-21 2020-07-01
 Japan hCoV-19/Japan/PG-0308/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- G3179A C6982T C8782T T28144C ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_479984
 2020-03-21 2020-07-01
 Japan hCoV-19/Japan/PG-0309/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- G3179A C6982T C8782T T28144C TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_480111
 2020-03-21 2020-07-01
 Japan hCoV-19/Japan/PG-0448/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- G3179A G4399T C6982T C8782T T28144C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_480112
 2020-03-21 2020-07-01
 Japan hCoV-19/Japan/PG-0449/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- G3179A C6982T C8782T T28144C TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_480113
 2020-03-21 2020-07-01
 Japan hCoV-19/Japan/PG-0450/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCT1- G3179A C6982T C8782T T28144C TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_480114
 2020-03-21 2020-07-01
 Japan hCoV-19/Japan/PG-0452/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- G3179A C6982T C8782T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480115
 2020-03-21 2020-07-01
 Japan hCoV-19/Japan/PG-0453/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- G3179A C6982T C8782T T28144C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_480116
 2020-03-21 2020-07-01
 Japan hCoV-19/Japan/PG-0454/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- G3179A C6982T C8782T T28144C TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_480297
 2020-03-21 2020-07-01
 Bulgaria hCoV-19/Bulgaria/06/2020
 C203T C241T C673T C3037T C14408T A23403G A28381C GGG28881AAC

EPI_ISL_480554
 2020-03-21 2020-07-02
 Senegal hCoV-19/Senegal/659/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T T8604C C14408T C15324T A23403G C24064T C27804T TATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29789-

EPI_ISL_482327
 2020-03-21 2020-07-03
 United States hCoV-19/USA/OR-PROV-045/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_482581
 2020-03-21 2020-07-04
 China hCoV-19/Hangzhou/HZCDC7155/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_482582
 2020-03-21 2020-07-04
 China hCoV-19/Hangzhou/HZCDCp145/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T T19839C A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_483060 MT706050
 2020-03-21 2020-07-05
 New Zealand SARS-CoV-2/human/NZL/20CHL869065O/2020
 ATTAAAGGTTTATACCTTCC1- C241T C3037T C14408T A20268G A23403G

EPI_ISL_483722
 2020-03-21 2020-07-08
 Israel hCoV-19/Israel/n14276/2020
 C241T A2514- T2737C C3737A T4885C T5818C C11960A C12123A C14408T C17304T C18877T C21707A G21839T AA23165- A23403G G26660- T28217C C28720A

EPI_ISL_484082
 2020-03-21 2020-07-08
 United Kingdom hCoV-19/England/GSTT-265DC22/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- T24024A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484085
 2020-03-21 2020-07-08
 United Kingdom hCoV-19/England/GSTT-265DC5F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484087
 2020-03-21 2020-07-08
 United Kingdom hCoV-19/England/GSTT-265DC7D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T G13627T C14805T C15540T G26144T A28338G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484692
 2020-03-21 2020-07-08
 United States hCoV-19/USA/MN-MDH-1289/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T G10870T C14408T A23403G G25563T A25859G AGTTTCCATTTGGAATCTTGATT27270- GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_488519
 2020-03-21 2020-07-14
 United Kingdom hCoV-19/England/NORT-2844AC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1406S A2480G C2558T C6151T G11083T C14805T T25202K G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488681
 2020-03-21 2020-07-14
 United Kingdom hCoV-19/England/NORT-2844CA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G27996T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488714
 2020-03-21 2020-07-14
 United Kingdom hCoV-19/England/NORT-28454F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T A23403G C23731T T25202K G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488773
 2020-03-21 2020-07-14
 United Kingdom hCoV-19/England/NORT-281919/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A A9741G C10507T G27906T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488777
 2020-03-21 2020-07-14
 United Kingdom hCoV-19/England/NORT-281937/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A C10507T G11083T T15966Y C16948Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488778
 2020-03-21 2020-07-14
 United Kingdom hCoV-19/England/NORT-2819BF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2869G C3037T G3074A C14408T G17278T A23403G GGG28881AAC C29095T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488781
 2020-03-21 2020-07-14
 United Kingdom hCoV-19/England/NORT-28190A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A C10507T -27904T G27906T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488787
 2020-03-21 2020-07-14
 United Kingdom hCoV-19/England/NORT-281955/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G C9223T G11083T C14805T T17247C G26144T G29751T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488811
 2020-03-21 2020-07-14
 United Kingdom hCoV-19/England/NORT-281894/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A C7926T C13530T T27404A A27669G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488812
 2020-03-21 2020-07-14
 United Kingdom hCoV-19/England/NORT-281946/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A C10507T A16687G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488814
 2020-03-21 2020-07-14
 United Kingdom hCoV-19/England/NORT-2818D0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488815
 2020-03-21 2020-07-14
 United Kingdom hCoV-19/England/NORT-2819DD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G27281T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488816
 2020-03-21 2020-07-14
 United Kingdom hCoV-19/England/NORT-281ACB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G G22225T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488822
 2020-03-21 2020-07-14
 United Kingdom hCoV-19/England/NORT-281A9E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G C5170T C9223T G11083T C14805T T17247C T25202K G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488832
 2020-03-21 2020-07-14
 United Kingdom hCoV-19/England/NORT-281973/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G C9223T G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491453
 2020-03-21 2020-07-17
 Costa Rica hCoV-19/Costa Rica/INC-0042/2020
 ATTAAAGGTTTATACCTTCCCA1- G24C A27T C241T C3037T C14408T G15732T T19143C A20268G A23403G ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_492111
 2020-03-21 2020-07-20
 Australia hCoV-19/Australia/SAP123/2020
 ATTAAAG1- T1368C C6990T G11083T C14805T C20736T C23707T G26144T

EPI_ISL_492128
 2020-03-21 2020-07-20
 Australia hCoV-19/Australia/SAP191/2020
 ATTAAAGGT1- C241T C1059T C3037T C14408T A23403G T24139A G25563T G25879T

EPI_ISL_492134
 2020-03-21 2020-07-20
 Australia hCoV-19/Australia/SAP369/2020
 A1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T

EPI_ISL_492135
 2020-03-21 2020-07-20
 Australia hCoV-19/Australia/SAP370/2020
 A1- C241T C2003T C3037T C14408T G18394T A20268G A23403G

EPI_ISL_492140
 2020-03-21 2020-07-20
 Australia hCoV-19/Australia/SAP375/2020
 AT1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T

EPI_ISL_492141
 2020-03-21 2020-07-20
 Australia hCoV-19/Australia/SAP376/2020
 AT1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T

EPI_ISL_492143
 2020-03-21 2020-07-20
 Australia hCoV-19/Australia/SAP378/2020
 ATT1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T

EPI_ISL_492146
 2020-03-21 2020-07-20
 Australia hCoV-19/Australia/SAP381/2020
 ATTA1- C241T C1059T C3037T C10851T C14408T G20931T A23403G C23439T G25563T

EPI_ISL_492147
 2020-03-21 2020-07-20
 Australia hCoV-19/Australia/SAP382/2020
 ATTA1- G210T A2480G C2558T G11083T C14805T G26144T

EPI_ISL_492150
 2020-03-21 2020-07-20
 Australia hCoV-19/Australia/SAP385/2020
 ATTAAAGG1- C4540T C8782T T9477A C9891T C14805T C19441T G25979T T28144C C28311T C28657T C28863T

EPI_ISL_492158
 2020-03-21 2020-07-20
 Australia hCoV-19/Australia/SAP393/2020
 ATT1- G374A C8782T C17747T A17858G C18060T T28144C

EPI_ISL_492159
 2020-03-21 2020-07-20
 Australia hCoV-19/Australia/SAP394/2020
 ATTA1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T CA28863TT

EPI_ISL_492164
 2020-03-21 2020-07-20
 Australia hCoV-19/Australia/SAP399/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C2558T G11083T C14805T G26144T

EPI_ISL_492979
 2020-03-21 2020-07-20
 Singapore hCoV-19/Singapore/484/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G C4633T C9223T C10626T G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493208
 2020-03-21 2020-07-21
 Taiwan hCoV-19/Taiwan/NCKUH-015/2020
 A1GGAGTGCTTAA A4G GGTTTAT7CA A14G C241T C3037T C14408T A23403G GGG28881AAC C29679T C29857T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873G

EPI_ISL_495332 MT791868
 2020-03-21 2020-07-22
 United States SARS-CoV-2/human/USA/FL-BPHL-0426/2020
 ATT1- C241T C2416T C3037T C14408T A23403G G25563T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_495333 MT791869
 2020-03-21 2020-07-22
 United States SARS-CoV-2/human/USA/FL-BPHL-0427/2020
 A1- C241T C1059T C3037T C14408T A23403G G24933T G25563T C27964T C28099T AATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29849-

EPI_ISL_495334 MT791870
 2020-03-21 2020-07-22
 United States SARS-CoV-2/human/USA/FL-BPHL-0428/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C241T C3037T T8296C C14408T C18877T A23403G G25563T G28027T G28690T AATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29818-

EPI_ISL_495347 MT791883
 2020-03-21 2020-07-22
 United States SARS-CoV-2/human/USA/FL-BPHL-0441/2020
 ATTAAAGGTTTA1- C1102T C8782T C17747T A17858G C18060T T22972C T28144C AAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29812-

EPI_ISL_495389 MT791844
 2020-03-21 2020-07-22
 United States SARS-CoV-2/human/USA/FL-BPHL-0483/2020
 ATTA1- C241T C1059T A1124C C3037T C14408T A23403G G25563T C28695T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_495390 MT791845
 2020-03-21 2020-07-22
 United States SARS-CoV-2/human/USA/FL-BPHL-0484/2020
 ATTA1- C241T C1059T C3037T C14408T A23403G G25563T ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_497798
 2020-03-21 2020-07-25
 China hCoV-19/Hong Kong/HKU-200723-031/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G7065A C14408T A17969G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_497813
 2020-03-21 2020-07-25
 China hCoV-19/Hong Kong/HKU-200723-046/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G15906T C18348T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498043
 2020-03-21 2020-07-26
 South Korea hCoV-19/Korea/KCDC2142/2020
 ATTAA1- A6G T4402C G5062T C8782T G17814T T28144C

EPI_ISL_498047
 2020-03-21 2020-07-26
 South Korea hCoV-19/Korea/KCDC2146/2020
 C241T C1059T C3037T C14408T C16260T G22205C A23403G T24139C G25563T C28821A

EPI_ISL_499466
 2020-03-21 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A62BB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- ATG1605- C20270T A29683W C29870A

EPI_ISL_499671
 2020-03-21 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A5FC4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T C18877T A23403G G25563T

EPI_ISL_499672
 2020-03-21 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A5FD3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C3369T G3431K C4158T C14408T A23403G GGG28881AAC

EPI_ISL_499673
 2020-03-21 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A5FE2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G1148T A1515G T2845Y C9223T G11083T C14805T T17247C T19617G G21255C G26144T

EPI_ISL_499674
 2020-03-21 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A600C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C10078Y C14408T A23403G C25350Y

EPI_ISL_499676
 2020-03-21 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A602A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T C15237Y A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_499677
 2020-03-21 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A6039/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G C25350T

EPI_ISL_499679
 2020-03-21 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A6066/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G C25350T C29870A

EPI_ISL_499680
 2020-03-21 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A6075/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C884T C3037T G10097A C14408T A23403G C23731T C27513T GGG28881AAC

EPI_ISL_499682
 2020-03-21 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A60B1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G1440A G2891R C4668T G7312R C26447T

EPI_ISL_499684
 2020-03-21 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A60EE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A2480G C2558T G11083T C14805T G26144T

EPI_ISL_499685
 2020-03-21 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A60FD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G11521T C14408T G15016T G21624K A23403G GGG28881AAC C29284T

EPI_ISL_499686
 2020-03-21 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A6109/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G10097A T13216G C14408T A23403G C23731T G25563A GGG28881AAC

EPI_ISL_499692
 2020-03-21 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A61DC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_499693
 2020-03-21 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A61EB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C8782T C9042T T28144C G28878A G29742A

EPI_ISL_499694
 2020-03-21 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A6215/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A2480G C2558T C6471Y G11083T C14805T T20988C C23280T G23405A G26144T

EPI_ISL_499695
 2020-03-21 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A6233/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A20268G A23403G G26501T C28854T

EPI_ISL_499696
 2020-03-21 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A6242/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T C21292T A23403G C25587T C27046T C28344A GGG28881AAC

EPI_ISL_499698
 2020-03-21 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A628E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T C3037T C14408T A19655G A23403G G25563T

EPI_ISL_499699
 2020-03-21 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A62AC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_500132
 2020-03-21 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A55FF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A1515G T7831C C9223T C11074Y G11083T C14805T T17247C A17799G G26144T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_500150
 2020-03-21 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A57AE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T C3037T C3411T C14408T A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_500505
 2020-03-21 2020-07-29
 United States hCoV-19/USA/NY-UW-MAYO26/2020
 ATTAAA1- C36Y C241T C3037T C14408T C14703T G15327T A23403G GGG28881AAC AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_500602
 2020-03-21 2020-07-29
 Australia hCoV-19/Australia/NSW2018/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500603
 2020-03-21 2020-07-29
 Australia hCoV-19/Australia/NSW2020/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500607
 2020-03-21 2020-07-29
 Australia hCoV-19/Australia/NSW2032/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T C18086T G26144T G28842T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500608
 2020-03-21 2020-07-29
 Australia hCoV-19/Australia/NSW2033/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T C18086T G26144T G28842T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500616
 2020-03-21 2020-07-29
 Australia hCoV-19/Australia/NSW2045/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500618
 2020-03-21 2020-07-29
 Australia hCoV-19/Australia/NSW2047/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3140T C14408T A23403G C26082A CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500619
 2020-03-21 2020-07-29
 Australia hCoV-19/Australia/NSW2049/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A23403G T25473C GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500649
 2020-03-21 2020-07-29
 Australia hCoV-19/Australia/NSW2185/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500650
 2020-03-21 2020-07-29
 Australia hCoV-19/Australia/NSW2187/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17747T A17858G C18060T A24694T T28144C CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500652
 2020-03-21 2020-07-29
 Australia hCoV-19/Australia/NSW2189/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3987T C14408T C22675T A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500653
 2020-03-21 2020-07-29
 Australia hCoV-19/Australia/NSW2191/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17747T A17858G C18060T A24694T T28144C CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500655
 2020-03-21 2020-07-29
 Australia hCoV-19/Australia/NSW2194/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500656
 2020-03-21 2020-07-29
 Australia hCoV-19/Australia/NSW2195/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4540T C8782T T9477A C14805T C23940T G25979T T28144C C28311T C28657T C28863T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500664
 2020-03-21 2020-07-29
 Australia hCoV-19/Australia/NSW2206/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17747T A17858G C18060T A24694T T28144C G29134A CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500665
 2020-03-21 2020-07-29
 Australia hCoV-19/Australia/NSW2207/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G15958T A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500666
 2020-03-21 2020-07-29
 Australia hCoV-19/Australia/NSW2208/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10851T C14408T A23403G G25563T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500667
 2020-03-21 2020-07-29
 Australia hCoV-19/Australia/NSW2212/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G374A C8782T C14599T C17747T A17858G C18060T G19656T C26013T T28144C CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500668
 2020-03-21 2020-07-29
 Australia hCoV-19/Australia/NSW2214/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4540T C8782T T9477A C14805T G25183T G25979T T28144C C28311T C28657T C28863T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500685
 2020-03-21 2020-07-29
 Australia hCoV-19/Australia/NSW2245/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17747T A17858G C18060T A24694T T28144C CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500695
 2020-03-21 2020-07-29
 Australia hCoV-19/Australia/NSW2258/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T11638C C14408T A23403G GGG28881AAC C29708T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500696
 2020-03-21 2020-07-29
 Australia hCoV-19/Australia/NSW2259/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1738T C3037T C14408T A23403G T25473C GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_501176
 2020-03-21 2020-07-31
 Malaysia hCoV-19/Malaysia/0121/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C313T C3037T C14408T G22132K A23403G GGG28881AAC TG29867AA C29870A

EPI_ISL_501227
 2020-03-21 2020-07-31
 Malaysia hCoV-19/Malaysia/9857/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C6312A G11083T C13730T C19524T C23929T C28311T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_501228
 2020-03-21 2020-07-31
 Malaysia hCoV-19/Malaysia/9886/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241Y C313Y C6312M C13730T C19524T C23929Y C24054Y GGG28881RRS C29870A

EPI_ISL_501570
 2020-03-21 2020-07-31
 United Kingdom hCoV-19/England/BRIS-130E93/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC C29296T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507705
 2020-03-21 2020-08-03
 United States hCoV-19/USA/MI-MDHHS-SC21451/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C3037T C14408T A23403G G25563T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_507708
 2020-03-21 2020-08-03
 United States hCoV-19/USA/MI-MDHHS-SC21454/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25563T C25976A TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_508123
 2020-03-21 2020-08-04
 Australia hCoV-19/Australia/SAP432/2020
 AT1- C222T C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T

EPI_ISL_508127
 2020-03-21 2020-08-04
 Australia hCoV-19/Australia/SAP436/2020
 ATTAAAGGTTTATACCT1- C241T C1059T C3037T C10851T C14408T A23403G G25563T

EPI_ISL_508129
 2020-03-21 2020-08-04
 Australia hCoV-19/Australia/SAP438/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C16289T A23403G G25429T T28053C

EPI_ISL_508133
 2020-03-21 2020-08-04
 Australia hCoV-19/Australia/SAP442/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C6312A A8651C G11083T C13730T C23929T C28311T C28844T

EPI_ISL_508142
 2020-03-21 2020-08-04
 Australia hCoV-19/Australia/SAP452/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTC1- C241T C1059T C3037T C10851T C14408T G20931T A23403G C23439T G25563T G28541T

EPI_ISL_508743 MT834625
 2020-03-21 2020-08-04
 United States SARS-CoV-2/human/USA/FL-BPHL-0540/2020
 AT1- C241T C601T C3037T C8389T C14408T A17521G A22206G A23403G G25563T G27915A GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_508744 MT834626
 2020-03-21 2020-08-04
 United States SARS-CoV-2/human/USA/FL-BPHL-0541/2020
 AT1- C241T C3037T A7757G C8389T C14408T A23403G G25563T G27915A C28550A C29323T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_508781 MT834623
 2020-03-21 2020-08-04
 United States SARS-CoV-2/human/USA/FL-BPHL-0577/2020
 ATTA1- C241T C313T C3037T C14408T A23403G GGG28881AAC C29614T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_508782 MT834624
 2020-03-21 2020-08-04
 United States SARS-CoV-2/human/USA/FL-BPHL-0578/2020
 A1- C241T C313T C3037T C14408T A23403G GGG28881AAC C29614T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_508786 MT834630
 2020-03-21 2020-08-04
 United States SARS-CoV-2/human/USA/FL-BPHL-0582/2020
 ATT1- C241T C1059T C3037T C14408T A23403G G25471C G25563T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_508790 MT834634
 2020-03-21 2020-08-04
 United States SARS-CoV-2/human/USA/FL-BPHL-0586/2020
 A1- C241T C1059T C3037T T3499C C11916T C14408T A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_508791 MT834635
 2020-03-21 2020-08-04
 United States SARS-CoV-2/human/USA/FL-BPHL-0587/2020
 AT1- C241T C1059T C3037T C14408T T22741C A23403G G25563T GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_508793 MT834637
 2020-03-21 2020-08-04
 United States SARS-CoV-2/human/USA/FL-BPHL-0589/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T C14408T C21110T A23403G G25563T C27964T C28846T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_508803 MT834647
 2020-03-21 2020-08-04
 United States SARS-CoV-2/human/USA/FL-BPHL-0599/2020
 AT1- C8782T C16457T C17747T A17858G C18060T T28144C T28204C CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_508949
 2020-03-21 2020-08-04
 France hCoV-19/France/ARA12155/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCA1- C241T C3037T C14408T C15324T A23403G AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_509005
 2020-03-21 2020-08-04
 France hCoV-19/France/ARA12151/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T C3037T C14408T A23403G G25563T G28423A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_509512
 2020-03-21 2020-08-05
 Australia hCoV-19/Australia/NSW2233/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G T25473C GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_509513
 2020-03-21 2020-08-05
 Australia hCoV-19/Australia/NSW2234/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1397A C2113T G10112T G11083T C14649T C18928T T28688C G29374A G29742T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_509514
 2020-03-21 2020-08-05
 Australia hCoV-19/Australia/NSW2235/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3140T C14408T A23403G C26082A CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_509703 MT844038
 2020-03-21 2020-08-05
 Guatemala SARS-CoV-2/human/GTM/CDC-1236/2020
 C241T C3037T C14408T A20268G A23403G C25624T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_510964
 2020-03-21 2020-08-07
 Portugal hCoV-19/Portugal/PT0705/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- T2233C A9634T G11083T C14805T C23707T G26144T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_510965
 2020-03-21 2020-08-07
 Portugal hCoV-19/Portugal/PT0706/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- A3859G C11074T G11083T C14805T C16551T T17247C G26144T C29067T A29598G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511085
 2020-03-21 2020-08-07
 Portugal hCoV-19/Portugal/PT0826/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G G25429T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511086
 2020-03-21 2020-08-07
 Portugal hCoV-19/Portugal/PT0827/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C2416T C3037T C14408T C14786T T18623C C19884T G22093A A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511087
 2020-03-21 2020-08-07
 Portugal hCoV-19/Portugal/PT0828/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C14408T G18756T A23403G C26058T A26530G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511089
 2020-03-21 2020-08-07
 Portugal hCoV-19/Portugal/PT0830/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A20453G A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511090
 2020-03-21 2020-08-07
 Portugal hCoV-19/Portugal/PT0831/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T G19677T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511091
 2020-03-21 2020-08-07
 Portugal hCoV-19/Portugal/PT0832/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511234
 2020-03-21 2020-08-07
 Portugal hCoV-19/Portugal/PT1273/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- G5665A C11001T G11083T G26144T G28001T A29763T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511236
 2020-03-21 2020-08-07
 Portugal hCoV-19/Portugal/PT1275/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C3045T G11083T T14295C C16985T C19273T G26144T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511237
 2020-03-21 2020-08-07
 Portugal hCoV-19/Portugal/PT1276/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G T25159C GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511397
 2020-03-21 2020-08-07
 Portugal hCoV-19/Portugal/PT1438/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511541
 2020-03-21 2020-08-08
 Portugal hCoV-19/Portugal/PT0993/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T G5230T C14408T A20268G A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_512412
 2020-03-21 2020-08-11
 United Kingdom hCoV-19/England/PORT-2D209C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1457T A2480G C2558T G11083T C14805T G26144T C26340T G28851A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_512495
 2020-03-21 2020-08-11
 United Kingdom hCoV-19/Wales/PHWC-169699/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C6990T C14408T A23403G C29200T

EPI_ISL_512658
 2020-03-21 2020-08-11
 Costa Rica hCoV-19/Costa Rica/INC-0052/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- C241T C3037T C14408T A18196C A23403G CCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29835-

EPI_ISL_513301 MT704819
 2020-03-21 2020-07-03
 Germany SARS-CoV-2/human/DEU/SCoV2_4ZK/2020
 C241T C3037T C14408T A23403G C27213T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_513479 MT886353
 2020-03-21 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0068/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAA1- C241T C1059T C3037T C14408T A23403G G25563T AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513480 MT886354
 2020-03-21 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0069/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAA1- C241T C3037T C14408T A23403G GGG28881AAC AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513495 MT886370
 2020-03-21 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0085/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAA1- C241T C1059T C3037T C11916T C14408T A23403G G25563T AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513500 MT886376
 2020-03-21 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0091/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCT1- C241T T1918C C3037T G11222T C14408T C18877T A23403G G25563T AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513501 MT886377
 2020-03-21 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0092/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAA1- C241T C1059T C3037T C14408T A23403G G25563T AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513502 MT886378
 2020-03-21 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0093/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAA1- C241T C1059T C3037T C14408T A23403G G25563T AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513503 MT886379
 2020-03-21 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0094/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAA1- C241T C3037T C14408T C22450T A23403G AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513504 MT886380
 2020-03-21 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0095/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGT1- C241T C3037T C14408T C22450T A23403G G26909T AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513507 MT886383
 2020-03-21 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0098/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAA1- C241T C3037T C5654T C14408T C22450T A23403G AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_514143 MT890280
 2020-03-21 2020-08-14
 United States SARS-CoV-2/human/USA/FL-BPHL-0797/2020
 A1- A187G C241T C3037T C14408T A15668G C20233T A23403G TCTCTA25707- GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_514486
 2020-03-21 2020-08-17
 United Kingdom hCoV-19/England/PORT-2D20E7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1457T A2480G C2558T G11083T C14805T G26144T C26340T G28851A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_515317
 2020-03-21 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0031/2020
 ATTA1- C8782T G11083T C17747T A17858G C18060T G20237T G22661T G25284T T28144C

EPI_ISL_515318
 2020-03-21 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0032/2020
 ATTA1- C241T C379A C1059T C3037T CC14407TT A23403G G25563T

EPI_ISL_515319
 2020-03-21 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0033/2020
 ATTA1- C241T C379A C1059T C3037T CC14407TT A23403G G25563T

EPI_ISL_515320
 2020-03-21 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0034/2020
 ATTAAAGGTTTATACCTTC1- C241T C379A C1059T C3037T CC14407TT A23403G G25563T

EPI_ISL_518822
 2020-03-21 2020-08-25
 Oman hCoV-19/Oman/RESP-20-4395/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T A6466G C14408T A23403G TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_518876 MT920015
 2020-03-21 2020-08-25
 United States SARS-CoV-2/human/USA/MN-MDH-1482/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23403G G25644T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_518878 MT920017
 2020-03-21 2020-08-25
 United States SARS-CoV-2/human/USA/MN-MDH-1484/2020
 A1- C241T C3037T C14408T A23403G G25644T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862C

EPI_ISL_518885 MT920025
 2020-03-21 2020-08-25
 United States SARS-CoV-2/human/USA/MN-MDH-1492/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C8782T A17858G C18060T T28144C GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_518886 MT920026
 2020-03-21 2020-08-25
 United States SARS-CoV-2/human/USA/MN-MDH-1493/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23403G G25644T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_518889 MT920029
 2020-03-21 2020-08-25
 United States SARS-CoV-2/human/USA/MN-MDH-1496/2020
 ATTA1- C241T C1059T C3037T C14408T A23403G G25563T ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_518891 MT920031
 2020-03-21 2020-08-25
 United States SARS-CoV-2/human/USA/MN-MDH-1498/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23403G G25644T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_523288
 2020-03-21 2020-08-26
 Netherlands hCoV-19/Netherlands/LI-EMC-83/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T C26305T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_524464
 2020-03-21 2020-08-28
 Brazil hCoV-19/Brazil/SP-276/2020
 TTAAAGGTTTATACCTTCCCAGGT2- C241T C3037T A6319G C14408T A23403G G25088T T26149C G28487A GGG28881AAC GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_525624
 2020-03-21 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-24516-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_525625
 2020-03-21 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-25458-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C2676T T6329C C8782T A22606T T28144C G28878A G29742A GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_528283
 2020-03-21 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42201233/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C12076T T12739C C14408T C15324T A23403G TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_528284
 2020-03-21 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42201257/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G C25046T G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528285
 2020-03-21 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42201258/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2416T C3037T C9693T C14408T T17838C A23403G G25563T G26450T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528286
 2020-03-21 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42201259/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2416T C3037T C9693T C14408T T17838C A23403G G25563T G26450T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528287
 2020-03-21 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42201261/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G6553T C8950T C13862T C14408T A23403G C28836T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_528288
 2020-03-21 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42201263/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G6553T C8950T C13862T C14408T A23403G C28836T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528292
 2020-03-21 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42201335/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_528293
 2020-03-21 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42201336/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T G1008T C3037T C14408T C15324T A23403G G24755T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528294
 2020-03-21 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42201408/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528296
 2020-03-21 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42201474/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528297
 2020-03-21 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42201508/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T A3305G A3904G C14408T C15324T A23403G T23489C AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528299
 2020-03-21 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42201528/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_528301
 2020-03-21 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42201578/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C22277A A23403G C27046T GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_528302
 2020-03-21 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42201579/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G ACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29761-

EPI_ISL_528304
 2020-03-21 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42201625/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_528309
 2020-03-21 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42201738/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T C15324T C21911T A23403G TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_528310
 2020-03-21 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42201769/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C8293T C14408T T18488C A23403G T24739C A26530G TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_528311
 2020-03-21 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42201771/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C7735T C14408T C15324T A23403G TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_528312
 2020-03-21 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42201778/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T C21846T A23403G AGAGGCGGCAGTCAAGCCTCTTCT28802- TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_528313
 2020-03-21 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42201781/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G T25715C GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_528325
 2020-03-21 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42202218/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T T5941A C14408T C15324T A23403G ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_528326
 2020-03-21 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42202238/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C14408T C15324T A23403G

EPI_ISL_528327
 2020-03-21 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42202239/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C13957T C14408T C15324T G15982T T18436C C21648T A23403G TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_530042
 2020-03-21 2020-09-10
 Spain hCoV-19/Spain/MD-LP113/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- T7098C T28835C ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_530260
 2020-03-21 2020-09-11
 Australia hCoV-19/Australia/QLD980/2020/P1
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C1059T C3037T C9996T C11074T G11083T C14408T A23403G G24781T G25563T G28077T

EPI_ISL_530262
 2020-03-21 2020-09-11
 Australia hCoV-19/Australia/QLD982/2020/P1
 AT1- G374A C8782T C17747T A17858G C18060T T28144C

EPI_ISL_534844
 2020-03-21 2020-09-14
 United Kingdom hCoV-19/England/OXON-B31FA/2020
 A1515G C3140T C9223T C10277T G11083T C14805T T17247C G25906T G26144T

EPI_ISL_534860
 2020-03-21 2020-09-14
 United Kingdom hCoV-19/England/OXON-B3497/2020
 C241T C3037T T12139C C14408T G22346T A23403G GGG28881AAC

EPI_ISL_534871
 2020-03-21 2020-09-14
 United Kingdom hCoV-19/England/OXON-B35D0/2020
 C241T C3037T G10097A C14408T C19862T A23403G C23731T G28580T GGG28881AAC C29686T A29903-

EPI_ISL_534889
 2020-03-21 2020-09-14
 United Kingdom hCoV-19/England/OXON-B37F8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C1913T A2224G G11083T C14805T G16075T G26144T G28842T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_535025
 2020-03-21 2020-09-14
 United Kingdom hCoV-19/England/PORT-2D208D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12025T C14408T C19170T G19509A A23403G G28077T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535902
 2020-03-21 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00229741/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535907
 2020-03-21 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00229952/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G11083T C14805T G17944T G24794T G26144T G29742T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535909
 2020-03-21 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00230020/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G2764T C3037T C14408T A23403G G25217T G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535910
 2020-03-21 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00230110/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T19839C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535911
 2020-03-21 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00230159/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C8782T A11600G T18736C C24034T T26729C C27635T G28077C T28144C A29567C A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535912
 2020-03-21 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00230189/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C1616T C3037T C14408T G16396T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535913
 2020-03-21 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00230299/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C884T G1397A G8653T G11083T T28688C G29742T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535914
 2020-03-21 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00230315/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G C25433T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535915
 2020-03-21 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00230319/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C1616T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535916
 2020-03-21 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00230351/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C9733T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535917
 2020-03-21 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00230444/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C337T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535918
 2020-03-21 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00230448/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T G27877T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535919
 2020-03-21 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00230472/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535920
 2020-03-21 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00230473/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3195G C12754T C14408T C14649T C18431T A20268G A23403G C27559T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535922
 2020-03-21 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00230506/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535923
 2020-03-21 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00230536/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1912T C3037T C14408T C19366T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535926
 2020-03-21 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00230647/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G29243A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535927
 2020-03-21 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00230666/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G18027A A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535928
 2020-03-21 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00230676/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G C9223T G11083T C14805T T17247C A17799G C23127T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535929
 2020-03-21 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00230720/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8208T G9267A T9667C C14408T A23403G G25947T G28361A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535930
 2020-03-21 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00230755/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535931
 2020-03-21 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00230787/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8208T G9267A T9667C C14408T A23403G G25947T G28361A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535932
 2020-03-21 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00230796/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8208T G9267A T9667C C14408T A23403G G25947T G28361A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535933
 2020-03-21 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00230798/2020
 ATT1- C241T C3037T C8208T G9267A T9667C C14408T A23403G G25947T G28361A C28695T GGG28881AAC TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_535934
 2020-03-21 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00230813/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8208T G9267A T9667C C14408T A23403G G25947T G28361A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535935
 2020-03-21 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00230821/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8208T G9267A T9667C C14408T A23403G G25947T G28361A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535936
 2020-03-21 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00230881/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G167T C241T C1059T C3037T C14408T G18534A A23403G C24157T G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535937
 2020-03-21 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00230882/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G3483A C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535938
 2020-03-21 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00230895/2020
 ATTA1- C241T C722T C3037T C5730T C8208T G9267A T9667C C14408T A23403G G25947T G28361A GGG28881AAC TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_535941
 2020-03-21 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00230998/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T G17280T C17747T A17858G C18060T A24694T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535942
 2020-03-21 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00231066/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C12885T C14408T A19526C A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535943
 2020-03-21 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00231068/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C12885T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535945
 2020-03-21 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00231156/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535959
 2020-03-21 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00231634/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535969
 2020-03-21 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00232004/2020
 ATTAAA1- C241T G669T C3037T C14408T G15732T T19143C A20268G A23403G TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_535989
 2020-03-21 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00232601/2020
 ATTAAA1- C241T C3037T C8208T G9267A T9667C C14408T A23403G G25947T G28361A GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_535991
 2020-03-21 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00232609/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C788Y A1515G C9223T G11083T C14805T T17247C A17799G G26144T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_536238
 2020-03-21 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00239209/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- A34W C241T G1186A C2416T C3037T C14408T A23403G G25563T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_536239
 2020-03-21 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00239235/2020
 ATTA1- C241T G1186A C2416T C3037T C14408T A23403G G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_536556
 2020-03-21 2020-09-16
 Peru hCoV-19/Peru/CAL-INS-163/2020
 ATTAAAG1- C843T C8782T C26088T T28144C

EPI_ISL_537841
 2020-03-21 2020-09-16
 Spain hCoV-19/Spain/RI-CSIC-98002322/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C1059T C3037T T13006C C14408T G17302T A23403G G25563T C25688T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_537842
 2020-03-21 2020-09-16
 Spain hCoV-19/Spain/RI-CSIC-98002323/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C14408T C18877T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_538443
 2020-03-21 2020-09-17
 Singapore hCoV-19/Singapore/916/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G11083T C14408T G17259T A23403G G25563T A27736G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538450
 2020-03-21 2020-09-17
 Singapore hCoV-19/Singapore/919/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T8788C C14408T A23403G G25563T G26951A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538991
 2020-03-21 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A83F0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539526
 2020-03-21 2020-09-18
 Spain hCoV-19/Spain/CM-ISCIII-202018188/2020
 C241T G1738T C3037T C14408T A20268G A23403G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_548979
 2020-03-21 2020-09-28
 Singapore hCoV-19/Singapore/971/2020
 ATTAAA1- T65Y C241T C2724T C3037T C14408T A20268G A23403G C28854T C29614T AAAAAAAAAAAA29892-

EPI_ISL_560624
 2020-03-21 2020-09-29
 France hCoV-19/France/GE8782/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G G28690T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561351
 2020-03-21 2020-09-30
 United States hCoV-19/USA/DE-DHSS-F918676/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C379A C1059T C3037T C14408T C22480T A23403G G25563T TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_568516
 2020-03-21 2020-10-02
 Peru hCoV-19/Peru/LIM-UPCH-0119/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C241T C3037T G10265A C14408T A23403G GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_569601
 2020-03-21 2020-10-02
 France hCoV-19/France/IHU-0580/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C14408T T19839C A23403G GGG28881AAC TGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29772-

MT345802
 2020-03-21 2020-04-14
 United States SARS-CoV-2/human/USA/UNKNOWN-UW-2069/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T A29901G A29903G

MT371570
 2020-03-21 2020-04-15
 Czech Republic SARS-CoV-2/human/CZE/CzechiaMotol_2448/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCAT1- C241T C3037T C14408T A21643C A23403G GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

MT477843
 2020-03-21 2020-05-14
 United States SARS-CoV-2/human/USA/AK037/2020
 ATTAAAGGTTTAT1- T2266C C6027T A10236G G11083T C14805T T17247C G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

MT509452
 2020-03-21 2020-05-22
 United States SARS-CoV-2/human/USA/MD-HP00016/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT509468
 2020-03-21 2020-05-22
 United States SARS-CoV-2/human/USA/MD-HP00032/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G11083T C14805T C18508T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT670021
 2020-03-21 2020-06-25
 Chile SARS-CoV-2/human/CHL/2020-29192/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10507T C14408T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706307
 2020-03-21 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-179/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C9510T G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706308
 2020-03-21 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-180/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706324
 2020-03-21 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-196/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT772088
 2020-03-21 2020-07-16
 United States SARS-CoV-2/human/USA/WI-UW-06/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C1929T C8782T G16381A T17877C C20316T G25500T T28144C G28878A G29742A CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

MT772089
 2020-03-21 2020-07-16
 United States SARS-CoV-2/human/USA/WI-UW-07/2020
 ATTA1- G8A C8782T G16381A T17877C C20316T G25500T G26211T T28144C G28878A G29742A CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

MT772090
 2020-03-21 2020-07-16
 United States SARS-CoV-2/human/USA/WI-UW-08/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T G3871T C14408T A23403G C29614T ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

MT772091
 2020-03-21 2020-07-16
 United States SARS-CoV-2/human/USA/WI-UW-09/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C8782T T10771C C17747T A17858G C18060T T28144C GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

MT810566
 2020-03-21 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0438-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- GTTATG515- C1059T C3037T C5467T C14408T A23403G G25563T T27863C T28135C CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810571
 2020-03-21 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0445-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C8782T C17747T A17858G C18060T A24694T T28144C CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810955
 2020-03-21 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0248-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810969
 2020-03-21 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0310-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T C16762T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MW030223
 2020-03-21 2020-09-22
 Peru SARS-CoV-2/human/PER/covper087/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGT1- C843T C8782T C26088T T28144C C29675- ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

NMDC60013260
 2020-03-21 2020-06-01
 China hCoV-19/Guangzhou/ID015/2020
 T2C C6312A G11083T C13730T G20274T C23929T C25669T C28311T A29850G G29868M

EPI_ISL_418648
 2020-03-22 2020-03-30
 Belgium hCoV-19/Belgium/ULG-9618/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C679T C3037T C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_418650
 2020-03-22 2020-03-30
 Belgium hCoV-19/Belgium/ULG-9620/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1957T C2113T C3037T C7765T C14408T C17690T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_418654
 2020-03-22 2020-03-30
 Belgium hCoV-19/Belgium/ULG-9694/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2113T C3037T C7765T C14408T C17690T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_418655
 2020-03-22 2020-03-30
 Belgium hCoV-19/Belgium/ULG-9714/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_418656
 2020-03-22 2020-03-30
 Belgium hCoV-19/Belgium/ULG-9715/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15277T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_418657
 2020-03-22 2020-03-30
 Belgium hCoV-19/Belgium/ULG-9716/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A618G C3037T C14408T C15024T C15324T A23403G C27679T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_418659
 2020-03-22 2020-03-30
 Belgium hCoV-19/Belgium/ULG-9725/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_418663
 2020-03-22 2020-03-30
 Belgium hCoV-19/Belgium/ULG-9739/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G C25433T C25703A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_419177
 2020-03-22 2020-04-01
 France hCoV-19/France/ARA12125/2020
 C241T C2416T C3037T G8371T C14408T A23403G G25563T G25909T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_419178
 2020-03-22 2020-04-01
 France hCoV-19/France/ARA12217/2020
 C241T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_419179
 2020-03-22 2020-04-01
 France hCoV-19/France/ARA12222/2020
 C241T C3037T C14408T A23403G G25563T G25690T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_419180
 2020-03-22 2020-04-01
 France hCoV-19/France/ARA12238/2020
 C241T C3037T C7844A C14408T C15324T C20178T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_419181
 2020-03-22 2020-04-01
 France hCoV-19/France/ARA12249/2020
 C241T C2416T C3037T G8371T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_419182
 2020-03-22 2020-04-01
 France hCoV-19/France/ARA12250/2020
 C241T C3037T C14408T C15324T A15860G A23403G AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_419183
 2020-03-22 2020-04-01
 France hCoV-19/France/ARA12253/2020
 C241T C1059T C3037T C14408T A23403G G25563T C29530A AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_419184
 2020-03-22 2020-04-01
 France hCoV-19/France/ARA12260/2020
 C241T C3037T C14408T A23403G G25563T T27296C AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_419185
 2020-03-22 2020-04-01
 France hCoV-19/France/ARA12264/2020
 C241T C3037T A11935C C14408T C15324T A23403G T27419C AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_419186
 2020-03-22 2020-04-01
 France hCoV-19/France/ARA12265/2020
 C241T C3037T A11935C C14408T C15324T A23403G G23628T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_419187
 2020-03-22 2020-04-01
 France hCoV-19/France/ARA12269/2020
 C241T C3037T C5544T A10990G C14408T A23403G G24751T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_419188
 2020-03-22 2020-04-01
 France hCoV-19/France/ARA12270/2020
 C241T C1059T C3037T C14408T C18029T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_419673
 2020-03-22 2020-04-03
 Austria hCoV-19/Austria/CeMM0020/2020
 C241T C920Y C3037T A5829R C14408T A20268G A23403G TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_419827 MT451038
 2020-03-22 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC134/2020
 ATTA1- C241T C2507T C3037T C3373A C14408T A23403G GGG28881AAC

EPI_ISL_419828 MT451039
 2020-03-22 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC135/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23403G A25449G GGG28881AAC C29870M

EPI_ISL_419829 MT451040
 2020-03-22 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC136/2020
 ATTAAAGGTTT1- C241T C3037T C14408T A23403G AA29902-

EPI_ISL_419830 MT451041
 2020-03-22 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC137/2020
 ATTA1- C241T C3037T C13740T C14408T C15324T C23206T A23403G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_419957 MT451160
 2020-03-22 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC264/2020
 ATTAAA1- C241T G613A C3037T C14408T G15898T G22346A A23403G

EPI_ISL_419958 MT451161
 2020-03-22 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC265/2020
 ATTA1- C8782T C17747T A17858G C18060T A24694T T28144C T28853K

EPI_ISL_419959 MT451162
 2020-03-22 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC266/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T G613A C3037T C14408T G22346A A23403G

EPI_ISL_419960 MT451163
 2020-03-22 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC267/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T G17562T A23403G G25563T

EPI_ISL_419961 MT451164
 2020-03-22 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC268/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C2110Y A7479G C11074T G11083T C14805T T17247C C25572T G26144T C28887T

EPI_ISL_419962 MT451165
 2020-03-22 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC269/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T C7732T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_419963 MT451166
 2020-03-22 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC270/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G C29739T

EPI_ISL_419964 MT451167
 2020-03-22 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC271/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C14408T A23403G C29739T

EPI_ISL_419965 MT451168
 2020-03-22 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC272/2020
 C1076T G1397A G11083T C27964T T28688C G29742T

EPI_ISL_419966 MT451169
 2020-03-22 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC273/2020
 A187G C241T C3037T C14408T A23403G C25916T

EPI_ISL_419967 MT451170
 2020-03-22 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC274/2020
 AT1- A4C C241T C3037T C6723T C14408T A23403G T26094C

EPI_ISL_419968 MT451171
 2020-03-22 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC275/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23403G G25429T C26461T

EPI_ISL_419969 MT451172
 2020-03-22 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC276/2020
 ATTAAAGGTTTA1- C6312A G11083T C13730T C21789T C23929T C23934T C28311T T28963A

EPI_ISL_419970 MT451173
 2020-03-22 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC277/2020
 AT1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T

EPI_ISL_419971 MT451174
 2020-03-22 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC278/2020
 ATTA1- C241T C3037T C7165T T11959C C14408T A20268G A23403G

EPI_ISL_419972 MT451175
 2020-03-22 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC279/2020
 A1- C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_419973 MT451176
 2020-03-22 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC280/2020
 ATTAAAGGTT1- C3096T G11083T C12781T G13627T C14805T C15540T G17944T G26144T A28338G

EPI_ISL_419974 MT451177
 2020-03-22 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC283/2020
 A1- C241T C3037T C14408T C15324T G15982T A23403G G28233T

EPI_ISL_419975 MT451178
 2020-03-22 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC284/2020
 ATTAA1- C241T C3037T C14408T A23403G C29739T

EPI_ISL_419976 MT451179
 2020-03-22 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC285/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C3037T C14408T C15324T A23403G

EPI_ISL_419977 MT451180
 2020-03-22 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC286/2020
 AT1- C241T C3037T C14408T C15324T A23403G C25710T

EPI_ISL_419978 MT451181
 2020-03-22 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC287/2020
 AT1- C241T C1059T C3037T C14408T A23403G C24797T G25563T

EPI_ISL_419979 MT451182
 2020-03-22 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC288/2020
 ATTAAAGGTTTATACC1- G957A A1547G G7042T C8782T C17747T A17858G C18060T T28144C

EPI_ISL_419980 MT451183
 2020-03-22 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC289/2020
 A1- C241T C3037T T7438C C14408T A23403G C29353T

EPI_ISL_420021 MT322418
 2020-03-22 2020-04-08
 United States SARS-CoV-2/human/USA/VA-DCLS-0039/2020
 ATTAAAG1- C241T C1059T C3037T C14408T C14925T A23403G G25563T C29870A

EPI_ISL_420022 MT322419
 2020-03-22 2020-04-08
 United States SARS-CoV-2/human/USA/VA-DCLS-0040/2020
 ATTA1- C241T C1059T C3037T C14408T C14925T A23403G G25563T A27421G C29870A

EPI_ISL_420032
 2020-03-22 2020-04-04
 Democratic Republic of the Congo hCoV-19/DRC/236/2020
 ATTAAA1- C241T C1218T C3037T C8293T C14408T T18488C A23403G T24739C A26530G GAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29755-

EPI_ISL_420033
 2020-03-22 2020-04-04
 Democratic Republic of the Congo hCoV-19/DRC/241/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T C14408T T19839C A23403G G23868T C24099T GGG28881AAC CGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29754-

EPI_ISL_420035
 2020-03-22 2020-04-04
 Democratic Republic of the Congo hCoV-19/DRC/248/2020
 ATTAAAGGTTTA1- C241T C3037T C14408T C15324T A23403G GAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29755-

EPI_ISL_420056
 2020-03-22 2020-04-04
 France hCoV-19/France/HF3138/2020
 C241T C1059T C3037T C14408T C23029T A23403G G25563T A26459G TAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29817-

EPI_ISL_420057
 2020-03-22 2020-04-04
 France hCoV-19/France/HF3141/2020
 C241T G914A C1059T C3037T C14408T A20766G G21220A A23403G G24332T G25563T G26262A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_420063
 2020-03-22 2020-04-04
 France hCoV-19/France/IDF3230/2020
 C241T C3037T C14408T C15324T A23403G C27208T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_420238
 2020-03-22 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C051C/2020
 C241T C1059T C3037T C10138T C14408T A23403G G25563T G25906T

EPI_ISL_420270
 2020-03-22 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C0707/2020
 C241T C2940T C3037T C14408T C19524T T21467C A23403G

EPI_ISL_420598
 2020-03-22 2020-04-06
 Argentina hCoV-19/Argentina/C3013/2020
 C241T C3037T T10561C C14408T C15324T A23403G C28844T

EPI_ISL_420605
 2020-03-22 2020-04-06
 France hCoV-19/France/ARA12384/2020
 C241T C3037T C14408T C15324T A15860G A23403G AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_420606
 2020-03-22 2020-04-06
 France hCoV-19/France/ARA12388/2020
 C241T C2416T C3037T G8371T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_420951
 2020-03-22 2020-04-07
 United Kingdom hCoV-19/Wales/PHWC-24CF3/2020
 G1440A G2891A C25669T G28851T AAA29901-

EPI_ISL_420960
 2020-03-22 2020-04-07
 United Kingdom hCoV-19/Wales/PHWC-24F72/2020
 G1440A G2891A C4795T G28851T AAAAAAAAA29895-

EPI_ISL_420961
 2020-03-22 2020-04-07
 United Kingdom hCoV-19/Wales/PHWC-24F81/2020
 ATTA1- G1440A G2891A C25669T G28851T G29737S

EPI_ISL_420969
 2020-03-22 2020-04-07
 United Kingdom hCoV-19/Wales/PHWC-25111/2020
 AT1- G1440A G2891A G28851T AAAAAAAAA29895-

EPI_ISL_420970
 2020-03-22 2020-04-07
 United Kingdom hCoV-19/Wales/PHWC-25120/2020
 G1186C G1440A G2891A T6954C C9857T T24685C G28851T

EPI_ISL_420974
 2020-03-22 2020-04-07
 United Kingdom hCoV-19/Wales/PHWC-2516C/2020
 A2480G C2558T G11083T C14805T G26144T

EPI_ISL_420976
 2020-03-22 2020-04-07
 United Kingdom hCoV-19/Wales/PHWC-251B7/2020
 C8290T G11083T C14805T T17247C G26144T

EPI_ISL_420977
 2020-03-22 2020-04-07
 United Kingdom hCoV-19/Wales/PHWC-2523C/2020
 C241T C3037T T3100G G10097A C14408T A22190R A23403G C23731T G25947T GGG28881AAC AAAAAAAAAAAAAAAAA29887-

EPI_ISL_420978
 2020-03-22 2020-04-07
 United Kingdom hCoV-19/Wales/PHWC-253B1/2020
 C241T C3037T C14408T C16260T G17944T C21622T A23403G

EPI_ISL_421295
 2020-03-22 2020-04-07
 United States hCoV-19/USA/WI-UW-37/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11417T C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421297
 2020-03-22 2020-04-07
 United States hCoV-19/USA/WI-UW-39/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17747T A17858G C18060T G20326A T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421303
 2020-03-22 2020-04-07
 United States hCoV-19/USA/WI-UW-45/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11417T T14073C C14408T A23403G A23947G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421304
 2020-03-22 2020-04-07
 United States hCoV-19/USA/WI-UW-46/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11417T T14073C C14408T A23403G A23947G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421323
 2020-03-22 2020-04-07
 United States hCoV-19/USA/WI-UW-65/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11417T T14073C C14408T A23403G A23947G A27338G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421334
 2020-03-22 2020-04-07
 United States hCoV-19/USA/WI-UW-76/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17747T A17858G C18060T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421485
 2020-03-22 2020-04-08
 Portugal hCoV-19/Portugal/PT0082/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- C241T C3037T C14408T A23403G GGG28881AAC CGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29754-

EPI_ISL_421486
 2020-03-22 2020-04-08
 Portugal hCoV-19/Portugal/PT0083/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_421487
 2020-03-22 2020-04-08
 Portugal hCoV-19/Portugal/PT0084/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- C241T C1473T C3037T C9073T G12014A C14408T A23403G GGG28881AAC CGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29754-

EPI_ISL_421488
 2020-03-22 2020-04-08
 Portugal hCoV-19/Portugal/PT0085/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C14408T A23403G G25593T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_421490
 2020-03-22 2020-04-08
 Portugal hCoV-19/Portugal/PT0087/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- C241T C3037T C14408T A23403G GGG28881AAC CGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29754-

EPI_ISL_421491
 2020-03-22 2020-04-08
 Portugal hCoV-19/Portugal/PT0088/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A20268G A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_421492
 2020-03-22 2020-04-08
 Portugal hCoV-19/Portugal/PT0089/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C6633T C14408T A20268G A23403G G29734C TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_421651
 2020-03-22 2020-04-09
 Taiwan hCoV-19/Taiwan/225/2020
 ATTAAA1- C241T C3037T C6861T C12754T C14408T C19170T G19509A A23403G GGG28881AAC ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_422519 MT371022
 2020-03-22 2020-04-11
 United States SARS-CoV-2/human/USA/NY-PV09151/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C1059T C1917T C3037T C14408T G20005A T21458C A23403G G25563T GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_422521 MT370930
 2020-03-22 2020-04-11
 United States SARS-CoV-2/human/USA/NY-PV09153/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTT1- C241T C1059T C3037T C14408T A23403G G25563T GGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29778-

EPI_ISL_422522 MT370922
 2020-03-22 2020-04-11
 United States SARS-CoV-2/human/USA/NY-PV09154/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- A2745T G11083T C14805T T17247C G26144T GTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29759-

EPI_ISL_422524 MT370978
 2020-03-22 2020-04-11
 United States SARS-CoV-2/human/USA/NY-PV09157/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T G21520T A23403G G25563T GTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29759-

EPI_ISL_422525 MT371034
 2020-03-22 2020-04-11
 United States SARS-CoV-2/human/USA/NY-PV09158/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_422529 MT371008
 2020-03-22 2020-04-11
 United States SARS-CoV-2/human/USA/NY-PV09165/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_422530 MT371025
 2020-03-22 2020-04-11
 United States SARS-CoV-2/human/USA/NY-PV09168/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C619T C1059T C3037T C5575T C14408T A14912G A23403G G25563T GTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29759-

EPI_ISL_422555 MT371002
 2020-03-22 2020-04-11
 United States SARS-CoV-2/human/USA/NY-PV09200/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C3037T C4575T C14408T C18486T A23403G TAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29775-

EPI_ISL_422559 MT370924
 2020-03-22 2020-04-11
 United States SARS-CoV-2/human/USA/NY-PV09305/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTG1- C241T C1059T C3037T C14408T A23403G G25563T AGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29763-

EPI_ISL_422560 MT370974
 2020-03-22 2020-04-11
 United States SARS-CoV-2/human/USA/NY-PV09307/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C3037T C10335T C14408T C18877T A23403G G25563T GTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29759-

EPI_ISL_422561 MT371016
 2020-03-22 2020-04-11
 United States SARS-CoV-2/human/USA/NY-PV09308/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C3037T C14408T A23403G C27046T GGG28881AAC AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_422562 MT371017
 2020-03-22 2020-04-11
 United States SARS-CoV-2/human/USA/NY-PV09309/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1267T C3037T G4255T C14408T T16456G C20051T A23403G A26530G GGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29778-

EPI_ISL_422706 LR877775
 2020-03-22 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_171/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G20275A A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422707 LR877786
 2020-03-22 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_172/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C3037T C14408T A23403G C25904T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422708 LR877776
 2020-03-22 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_173/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G24077T G28985T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422709 LR877774
 2020-03-22 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_174/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C11109T C14408T C19813T A20251G A23403G A24010C G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422711 LR877777
 2020-03-22 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_176/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C3037T C14408T A23403G C25904T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422712 LR877779
 2020-03-22 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_177/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11596T C14408T G23126T A23403G G25606T A26530G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422716 LR877789
 2020-03-22 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_181/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- C2485T C17410T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422719 LR877799
 2020-03-22 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_184/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G15438T A20268G A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_423712
 2020-03-22 2020-04-12
 United Kingdom hCoV-19/England/20132003204/2020
 C241T C3037T C14408T A23403G G25907K GGG28881AAC

EPI_ISL_423734
 2020-03-22 2020-04-12
 United Kingdom hCoV-19/England/20132018804/2020
 G11083T C14805T T17247C G26144T

EPI_ISL_423735
 2020-03-22 2020-04-12
 United Kingdom hCoV-19/England/20132018904/2020
 G11083T C14805T T17247C G26144T

EPI_ISL_423772
 2020-03-22 2020-04-12
 United Kingdom hCoV-19/England/20132032604/2020
 C21T C241T C313T C3037T G10105T G11221T C14408T A20055R A23403G C25904T GGG28881AAC

EPI_ISL_423775
 2020-03-22 2020-04-12
 United Kingdom hCoV-19/England/20132032904/2020
 A2480G C2558T C4586Y G11083T C14805T G26144T

EPI_ISL_423818
 2020-03-22 2020-04-12
 United Kingdom hCoV-19/England/20132090404/2020
 C241T C3037T C14408T A23403G G25429T

EPI_ISL_423823
 2020-03-22 2020-04-12
 United Kingdom hCoV-19/England/20132091704/2020
 C241T C3037T C6861T C14408T C19170T G19509A A23403G T27844G GGG28881AAC

EPI_ISL_423824
 2020-03-22 2020-04-12
 United Kingdom hCoV-19/England/20132091804/2020
 A1399T A2480G C2558T C7279T G11083T G14187A C14805T G26144T

EPI_ISL_424244 MT326169
 2020-03-22 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1770/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACG1- C241T C1059T C3037T C5005T C14408T A23403G G25563T A29903-

EPI_ISL_424256 MT326092
 2020-03-22 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1774/2020
 ATTAAAGGTTT1- C241T C1059T C1473T C3037T C14408T A23403G G23426A G25563T G29553A AA29902-

EPI_ISL_424257 MT326093
 2020-03-22 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1775/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- A34W C241T C3037T C14408T G16075T T18689A C20031A A23403G C27046T GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_424258 MT326094
 2020-03-22 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1778/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACT1- C8782T C17747T A17858G C18060T C25614T T28144C AAAAAA29898-

EPI_ISL_424259 MT326095
 2020-03-22 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1797/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C241T C1059T C3037T C14408T A23403G G25563T G29553A -29904ANATANA

EPI_ISL_424260 MT326096
 2020-03-22 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1779/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- AACC34TTTA C241T C1059T C3037T C10319T C14408T A20755C A23403G G25563T G25677T -29904G

EPI_ISL_424262 MT326098
 2020-03-22 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1782/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- CC36TA C8782T C17747T A17858G C18060T G21770T T27384C T28144C A29903-

EPI_ISL_424263 MT326099
 2020-03-22 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1799/2020
 ATTAAAGGT1- C241T C379A C1059T T2244C C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_424264 MT326100
 2020-03-22 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1805/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C8782T G17427T C17747T A17858G C18060T T28144C AAAAA29899-

EPI_ISL_424267 MT326103
 2020-03-22 2020-04-12
 United States SARS-CoV-2/human/USA/UNKNOWN-UW-1817/2020
 ATTAAAG1- G8C TACCTTCCCAGGTAACAAACCAACC13- C8782T C17747T A17858G C18060T T28144C C28887T AAA29901-

EPI_ISL_424268 MT326104
 2020-03-22 2020-04-12
 United States SARS-CoV-2/human/USA/UNKNOWN-UW-1816/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAG1- C8782T C17747T A17858G C18060T T28144C C28887T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_424269 MT326105
 2020-03-22 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1828/2020
 ATTAAAGGTTTAT1- CCCAGGTAACAAACCAA19- CC36TH C1457T A6693G C8266T C8782T C14877T C17747T A17858G C18060T C20148T T28144C A29188T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_424270 MT326106
 2020-03-22 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1831/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C241T C1059T C3037T C12880T C14408T C15480T A23403G G25563T G29553A -29904AAAAAAAAAGAA

EPI_ISL_424274
 2020-03-22 2020-04-12
 United States hCoV-19/USA/WA-UW-1824/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C36Y C241T C1059T C3037T C14408T -23192AATGGTTTAATAGGCACAGGTGTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN C23202T A23403G G25563T -28669GGTTGCAACTGAGGGAGCCTTGAATACACCAAAAGATCACATTGGCACCCGCAATCCTGCTAACTATGCTGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN A28733T G29553A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_424276 MT326111
 2020-03-22 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1822/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCA1- G3231T C8782T C17747T A17858G C18060T T28144C

EPI_ISL_424318 MT326071
 2020-03-22 2020-04-12
 United States SARS-CoV-2/human/USA/ID-UW-1938/2020
 ATTAAAGGTTTATAC1- AACC34HTTH C241T T833C C1059T C3037T GATATGGTT11267- C14408T A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_424331 MT326083
 2020-03-22 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1907/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGT1- C241T C1059T C3037T C12880T C14408T A23403G G25563T G29553A AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_424332 MT326084
 2020-03-22 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1917/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C3373A C9733T C12778T C14408T C20457T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_424649
 2020-03-22 2020-04-13
 Belgium hCoV-19/Belgium/ULG-10082/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_424650
 2020-03-22 2020-04-13
 Belgium hCoV-19/Belgium/ULG-10094/2020
 C241T C679T C3037T C6701T C14408T C15324T A22280C A23403G

EPI_ISL_424651
 2020-03-22 2020-04-13
 Belgium hCoV-19/Belgium/ULG-10095/2020
 G1440A G2891A C26340T

EPI_ISL_424660
 2020-03-22 2020-04-13
 Belgium hCoV-19/Belgium/ULG-10051/2020
 C241T C3037T G4255T C14408T G18756T A23403G A26530G

EPI_ISL_424661
 2020-03-22 2020-04-13
 Belgium hCoV-19/Belgium/ULG-10053/2020
 C241T C3037T C14408T T15978C G17049T A21868T A23403G G24794T GGG28881AAC

EPI_ISL_424662
 2020-03-22 2020-04-13
 Belgium hCoV-19/Belgium/ULG-10061/2020
 C241T C313T C3037T C14408T G19518T A23403G G28845T GGG28881AAC

EPI_ISL_425316
 2020-03-22 2020-04-14
 United Kingdom hCoV-19/England/CAMB-74614/2020
 A2480G C2558T G11083T C14805T G26144T

EPI_ISL_425317
 2020-03-22 2020-04-14
 United Kingdom hCoV-19/England/CAMB-74623/2020
 C1314T G11083T C14805T T17247C G26144T

EPI_ISL_425548
 2020-03-22 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10E46F/2020
 C241T C3037T A7877G T11798C C14408T C16289T A23403G G25429T

EPI_ISL_425549
 2020-03-22 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10E47E/2020
 A2480G C2558T G11083T C14805T G20580T G26144T G28878T

EPI_ISL_425551
 2020-03-22 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10E49C/2020
 A7479G G11083T C14805T T17247C C25572T G26144T C28887T

EPI_ISL_425554
 2020-03-22 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10E4C9/2020
 ATG1605- A1904G G2123A C5826T C8090T C10789T

EPI_ISL_425868
 2020-03-22 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB070/2020
 C241T C3037T C14408T T16203C A20268G A23403G G29734C

EPI_ISL_425892
 2020-03-22 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB102/2020
 C988T G11083T C14805T T17247C G26144T C26735T C29585T

EPI_ISL_425893
 2020-03-22 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB103/2020
 C241T C3037T C14408T A23403G C25433T

EPI_ISL_425896
 2020-03-22 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB108/2020
 A2480G C2558T G11083T C14805T G20679T G26144T

EPI_ISL_425897
 2020-03-22 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB109/2020
 C241T C1059T C1609T C3037T T3331C C5869T C12400T C14408T A23403G G25563T

EPI_ISL_425899
 2020-03-22 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB111/2020
 C241T C3037T C14408T C15324T C20555T A23403G G28374A C29171T

EPI_ISL_425900
 2020-03-22 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB113/2020
 C241T C3037T A3911G C14408T C16694T A23403G C26028T

EPI_ISL_425904
 2020-03-22 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB120/2020
 C241T C3037T T3100G G10097A G10870T C14408T C17939T A23403G C23731T G25947T GGG28881AAC

EPI_ISL_425917
 2020-03-22 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB149/2020
 C241T C3037T C14408T A23403G C25350T

EPI_ISL_426295
 2020-03-22 2020-04-15
 United States hCoV-19/USA/NY-Wadsworth-27073-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C11139T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426318
 2020-03-22 2020-04-15
 United States hCoV-19/USA/NY-Wadsworth-26551-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T C18877T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426670 MT451253
 2020-03-22 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC362/2020
 AT1- C241T C3037T G3259A C14408T C17397T A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_426672 MT451255
 2020-03-22 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC364/2020
 ATTA1- G374A C6936T C8782T C17747T A17858G C18060T C25546A T28144C

EPI_ISL_426673 MT451256
 2020-03-22 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC365/2020
 A1- G957A A1547G C8782T C10036T C17747T A17858G C18060T T28144C

EPI_ISL_426674 MT451257
 2020-03-22 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC366/2020
 ATTA1- C241T C3037T G3259A C14408T C17397T A23403G GGG28881AAC G28904T

EPI_ISL_426675 MT451258
 2020-03-22 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC367/2020
 A1- C8782T T9477A C14805T G25979T T28144C C28657T C28760A C28863T

EPI_ISL_426676 MT451259
 2020-03-22 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC368/2020
 ATTA1- C241T C3037T G3564T A4987G C14408T C18431T A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_426677 MT641664
 2020-03-22 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC369/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C1059T C3037T G3564T A5353W G11535T G13571K C14408T C17403T C21711T A23403G G24933T G25563T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_426680 MT451261
 2020-03-22 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC373/2020
 ATTA1- C241T A23403G G25979T

EPI_ISL_426682 MT451263
 2020-03-22 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC375/2020
 ATTAAAGGT1- C241T C3037T G3564T G9802T C14408T A20268G A23403G G24933T

EPI_ISL_426683 MT451264
 2020-03-22 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC376/2020
 ATTAAAG1- C241T G247T C379A C1059T C3037T C14408T C22224T A23403G G25563T G27163T

EPI_ISL_426684 MT451265
 2020-03-22 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC377/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T G3564K C14408T A23403G GGG28881AAC G29254T

EPI_ISL_426685 MT641665
 2020-03-22 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC378/2020
 C3096T G3564T G11083T C12781T G13627T C14805T C15540T G17944T G24933T G26144T A28338G

EPI_ISL_426706 MT641669
 2020-03-22 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC403/2020
 A1- C3096T G3564T G8790K G11083T C12781T G13627T C14805T C15540T G17944T G24933T G26144T A28338G

EPI_ISL_426779 MT641682
 2020-03-22 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC509/2020
 C3096T G3564T G11083T C12781T G13627T C14805T C15540T G17944T G24933T G26144T A28338G

EPI_ISL_427278
 2020-03-22 2020-04-17
 United States hCoV-19/USA/MN-MDH-138/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C15738T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_427282
 2020-03-22 2020-04-17
 United States hCoV-19/USA/MN-MDH-143/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C20762T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_427283
 2020-03-22 2020-04-17
 United States hCoV-19/USA/MN-MDH-144/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T T19527C A23403G G25563T C27964T C28099T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_427284
 2020-03-22 2020-04-17
 United States hCoV-19/USA/MN-MDH-145/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T T19527C A22512M A23403G G25563T C27964T C28099T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_427285
 2020-03-22 2020-04-17
 United States hCoV-19/USA/MN-MDH-146/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241Y C1059Y C3037Y C14408Y A23403R G25563K T28144Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_427298
 2020-03-22 2020-04-18
 Brazil hCoV-19/Brazil/DF-891/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T A23403G T27299C GGG28881AAC T29148C AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_427394
 2020-03-22 2020-04-18
 Taiwan hCoV-19/Taiwan/TSGH-07/2020
 C241T C3037T C14408T C15324T A22404T A23403G -29904TAAAAAAAAAAAAAAAAAAAAAAAAATAAACAAAAAAAAAAAAAAAAAAAAAAAACAAAAAGAGGAACAAATTAAAAAAAACAGAAAATAAGTGAAATCTGAAAGACGAAAAAAAAAGCAAAAGAAAAACCAAGAAAAAAAAAAAATAAAAAAC

EPI_ISL_427680
 2020-03-22 2020-04-19
 Australia hCoV-19/Australia/NSW90/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAA1- T1368C C6990T G11083T C14805T C20736T C23707T G26144T ATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29677-

EPI_ISL_428277
 2020-03-22 2020-04-20
 United States hCoV-19/USA/WI-UW-181/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428278
 2020-03-22 2020-04-20
 United States hCoV-19/USA/WI-UW-182/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428279
 2020-03-22 2020-04-20
 United States hCoV-19/USA/WI-UW-183/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C28310A G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428280
 2020-03-22 2020-04-20
 United States hCoV-19/USA/WI-UW-184/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C6040T C8782T G12478A T18736C C24034T T26729C G28077C T28144C C28896G G29315T A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428281
 2020-03-22 2020-04-20
 United States hCoV-19/USA/WI-UW-185/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428686
 2020-03-22 2020-04-21
 Spain hCoV-19/Spain/Madrid_H12_23/2020
 A1C AAGGTTTATACCTTCCCAGGT5- C241T C3037T C14408T A20268G A23403G T29848A ATAGCTT29850- C29857T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_428687
 2020-03-22 2020-04-21
 Spain hCoV-19/Spain/Madrid_H12_24/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A20268G A23403G C27538T G29734C T29848A A29850T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_428688
 2020-03-22 2020-04-21
 Spain hCoV-19/Spain/Madrid_H12_25/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T C25728T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857TC

EPI_ISL_428711
 2020-03-22 2020-04-21
 Spain hCoV-19/Spain/Madrid_H12_4112/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G12849A C14408T A20268G A23403G G26109T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428722
 2020-03-22 2020-04-21
 Turkey hCoV-19/Turkey/HSGM-8010/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C884T G1397A G8653T G11083T C12741T T28688C G29742T

EPI_ISL_428723
 2020-03-22 2020-04-21
 Turkey hCoV-19/Turkey/HSGM-8964/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- G881A C3037T C14408T C18877T C22444T A23403G G25563T C26735T C28854T

EPI_ISL_428887
 2020-03-22 2020-04-22
 Russia hCoV-19/Russia/Moscow-77610/2020
 C241T G1355T C3037T G10097A C14408T G17964T A23403G C23731T GGG28881AAC

EPI_ISL_428889
 2020-03-22 2020-04-22
 Russia hCoV-19/Russia/Moscow-77620/2020
 C241T G1355T C3037T G10097A C14408T G17964T A23403G C23731T GGG28881AAC

EPI_ISL_428903
 2020-03-22 2020-04-22
 Russia hCoV-19/Russia/Primorskiy-79001/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_428904
 2020-03-22 2020-04-22
 Russia hCoV-19/Russia/Vector_77628/2020
 C241T C1059T C3037T C14408T A18093G A23403G G25563T

EPI_ISL_429199
 2020-03-22 2020-04-23
 Switzerland hCoV-19/Switzerland/GE0636/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C14408T A23403G G25563T G27561T

EPI_ISL_429479
 2020-03-22 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI374/2020
 C241T C1059T C1302T C3037T C14408T A23403G G25563T C28854T

EPI_ISL_429480
 2020-03-22 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI375/2020
 C241T C1059T C3037T G4399T C14408T G19086T A23403G G25563T

EPI_ISL_429481
 2020-03-22 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI376/2020
 C241T C1059T C1302T C3037T C14408T A23403G G25563T

EPI_ISL_429482
 2020-03-22 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI377/2020
 C241T C1059T C1347T C3037T C14408T G19086T A23403G G25563T

EPI_ISL_429519
 2020-03-22 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI420A/2020
 C241T C1059T C1302T C3037T C14408T A23403G G25563T

EPI_ISL_429729
 2020-03-22 2020-04-24
 Luxembourg hCoV-19/Luxembourg/LNS0481305/2020
 C241T C300T C1059T C3037T T13006C C13458T C14408T A23403G G25563T C25688T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_429733
 2020-03-22 2020-04-24
 Luxembourg hCoV-19/Luxembourg/LNS4423730/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAA29886-

EPI_ISL_429760
 2020-03-22 2020-04-24
 Luxembourg hCoV-19/Luxembourg/LNS0211710/2020
 C241T C2940T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_429778
 2020-03-22 2020-04-24
 Luxembourg hCoV-19/Luxembourg/LNS2580723/2020
 C241T C3037T C14408T A23403G GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_429861
 2020-03-22 2020-04-24
 Turkey hCoV-19/Turkey/HSGM-8968/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T C18877T C22444T A23403G G25563T C26735T C28854T

EPI_ISL_429862
 2020-03-22 2020-04-24
 Turkey hCoV-19/Turkey/HSGM-8970/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A20268G A23403G

EPI_ISL_429863
 2020-03-22 2020-04-24
 Turkey hCoV-19/Turkey/HSGM-8975/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- G881A C3037T C14408T C18877T C22444T A23403G G25563T C26735T C28854T

EPI_ISL_429864
 2020-03-22 2020-04-24
 Turkey hCoV-19/Turkey/HSGM-8979/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- G944A C3037T C14408T A23403G GGG28881AAC

EPI_ISL_429870
 2020-03-22 2020-04-24
 Turkey hCoV-19/Turkey/HSGM-8990/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T C19170T A23403G C25275T GGG28881AAC

EPI_ISL_430242 MT632528
 2020-03-22 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S204/2020
 C241T C379A C1059T T2244C C3037T C14408T A23403G G25563T

EPI_ISL_430856
 2020-03-22 2020-04-28
 Sweden hCoV-19/Sweden/20-08687/2020
 C241T C3037T C14195A C14408T A23403G G28368A G28851T

EPI_ISL_430857
 2020-03-22 2020-04-28
 Sweden hCoV-19/Sweden/20-08691/2020
 G167T C241T C1059T C3037T C14408T A22780G A23403G G24368T G25563T

EPI_ISL_431782
 2020-03-22 2020-04-29
 China hCoV-19/Fujian/IM3520014T/2020
 ATTAAAGGTTTATAC1- C241T C1059T C3037T C14408T C17502T A23403G G25563T CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

EPI_ISL_432177
 2020-03-22 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-252F0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T C14408T G21624T A23403G GGG28881AAC G29861R A29865R

EPI_ISL_432182
 2020-03-22 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-2531B/2020
 C241T C3037T C6990T C14408T A23403G

EPI_ISL_432231
 2020-03-22 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-2532A/2020
 A2480G C2558T G11083T C14805T G26144T G26426A

EPI_ISL_433407
 2020-03-22 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB112/2020
 C241T C3037T C14408T C15324T C17410T A23403G T25766C G28374A C29171T

EPI_ISL_434456
 2020-03-22 2020-04-29
 Greece hCoV-19/Greece/48/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C8782T C9430T T9477A C14805T A22151G G25979T T28144C C28657T C28863T TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_434639
 2020-03-22 2020-04-30
 United States hCoV-19/USA/DC-HP00043/2020
 C241T C1059T C1917T C3037T C14408T A23403G G25563T

EPI_ISL_434691
 2020-03-22 2020-05-01
 United States hCoV-19/USA/DC-HP00022/2020
 A2480G C2558T A4912C G11083T C14805T C17010A C21575T G26144T

EPI_ISL_434843
 2020-03-22 2020-05-01
 United States hCoV-19/USA/TX-HMH144/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434844
 2020-03-22 2020-05-01
 United States hCoV-19/USA/TX-HMH145/2020
 C8782T C17747T A17858G C18060T A24694T T28144C

EPI_ISL_434845
 2020-03-22 2020-05-01
 United States hCoV-19/USA/TX-HMH146/2020
 T514C C17410T

EPI_ISL_434846
 2020-03-22 2020-05-01
 United States hCoV-19/USA/TX-HMH147/2020
 C241T C1059T C3037T C14408T G17808T A23403G G25563T T27384C C27964T

EPI_ISL_434847
 2020-03-22 2020-05-01
 United States hCoV-19/USA/TX-HMH148/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T

EPI_ISL_434849
 2020-03-22 2020-05-01
 United States hCoV-19/USA/TX-HMH150/2020
 C302T T490A C3177T C6040T C8782T C8950T G12478A T18736C C24034T T26729C G28077C T28144C C28896G C29451T A29700G

EPI_ISL_434850
 2020-03-22 2020-05-01
 United States hCoV-19/USA/TX-HMH151/2020
 C241T C1059T C3037T C14408T G21641T A23403G G25563T C27964T

EPI_ISL_434851
 2020-03-22 2020-05-01
 United States hCoV-19/USA/TX-HMH152/2020
 C241T C1059T C3037T C5575T C14408T G17808T A23403G G25563T C27964T

EPI_ISL_434852
 2020-03-22 2020-05-01
 United States hCoV-19/USA/TX-HMH153/2020
 C186T C241T C2416T C3037T C14408T A23403G G25563T G26233T C27881T

EPI_ISL_434853
 2020-03-22 2020-05-01
 United States hCoV-19/USA/TX-HMH154/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_435045 MT428551
 2020-03-22 2020-05-02
 Kazakhstan SARS-CoV-2/human/KAZ/NCB-1/2020
 C884T G1397A TTG3333- C4234T G8653T G11083T T16272G C17141A T28688C

EPI_ISL_435405
 2020-03-22 2020-05-04
 Hungary hCoV-19/Hungary/SRC-00126/2020
 C241T C313T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_435406
 2020-03-22 2020-05-04
 Hungary hCoV-19/Hungary/SRC-00175/2020
 C241T C3037T C8293T A11839G C14408T C16575T T19839C A23403G GGG28881AAC

EPI_ISL_435407
 2020-03-22 2020-05-04
 Hungary hCoV-19/Hungary/SRC-00183/2020
 C241T C1059T C3037T C14408T A23403G G25563T C28432T

EPI_ISL_435408
 2020-03-22 2020-05-04
 Hungary hCoV-19/Hungary/SRC-00186/2020
 C241T C313T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_436041
 2020-03-22 2020-05-05
 United States hCoV-19/USA/DC-CDC-9092/2020
 C241T C1059T C3037T C14408T A23403G G25563T G27147T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_436205
 2020-03-22 2020-05-06
 Spain hCoV-19/Spain/Valencia110/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C9515T C14408T A20268G A23403G TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_436207
 2020-03-22 2020-05-06
 Spain hCoV-19/Spain/Valencia112/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T G1882T C3037T C14408T A23403G C29144T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_436397
 2020-03-22 2020-05-06
 Spain hCoV-19/Spain/Valencia302/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C3037T C14408T A23403G C29144T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_436831 MT439268
 2020-03-22 2020-05-06
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20107/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C3253T C14408T A23403G G25563T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_436833 MT439282
 2020-03-22 2020-05-06
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20132/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- T177Y T490A C3177T C8782T T18736C G19684T C24034T T26729C C27635T G28077C T28144C A29700G CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_436834 MT439271
 2020-03-22 2020-05-06
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20160/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T T9370Y C14408T C18693Y A23403G G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_437093
 2020-03-22 2020-05-08
 Latvia hCoV-19/Latvia/014/2020
 C241T C3037T T9727C C14408T C19488T C22712T A23403G GGG28881AAC

EPI_ISL_437212
 2020-03-22 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0011/2020
 C241T C313T C3037T C13059T C14408T A23403G GGG28881AAC

EPI_ISL_437230
 2020-03-22 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0031/2020
 C241T C3037T C14408T A23403G A25065G C27046T C28344A GGG28881AAC C29541T

EPI_ISL_437236
 2020-03-22 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0037/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_437260
 2020-03-22 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0061/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_437468
 2020-03-22 2020-05-09
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Makkah20/2020
 ATTAAAGGTTTATA1- C241T C2113T C3037T C7765T C14408T C17690T C18877T A21137G A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871T

EPI_ISL_437560
 2020-03-22 2020-05-11
 United States hCoV-19/USA/CA-SR0250/2020
 C241T C1059T A2018G C3037T C14408T A23403G G25563T

EPI_ISL_437583
 2020-03-22 2020-05-11
 United States hCoV-19/USA/CA-SR0201/2020
 C241T C1059T C3037T C14408T A23403G G25563T C29870A

EPI_ISL_437595
 2020-03-22 2020-05-11
 United States hCoV-19/USA/CA-SR0182/2020
 C241T C379A C1059T C3037T C14408T A23403G G25563T C29870A

EPI_ISL_438083
 2020-03-22 2020-05-12
 Austria hCoV-19/Austria/CeMM0254/2020
 G11083T C14805T T17247C C21846T T22521K G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_438084
 2020-03-22 2020-05-12
 Austria hCoV-19/Austria/CeMM0255/2020
 C241Y C3037Y C14408Y C16017Y T17247Y G20378K C21846Y T22521K C22624M A23403R G26144K G26792K TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_438085
 2020-03-22 2020-05-12
 Austria hCoV-19/Austria/CeMM0256/2020
 C241T C3037T G12832A C14408T C20457T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_438086
 2020-03-22 2020-05-12
 Austria hCoV-19/Austria/CeMM0257/2020
 C241T C2003T C3037T C14408T A20268G T22521K A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_438087
 2020-03-22 2020-05-12
 Austria hCoV-19/Austria/CeMM0258/2020
 C241T C3037T C14408T A23403G C24642T C27046T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_438124
 2020-03-22 2020-05-12
 Austria hCoV-19/Austria/CeMM0361/2020
 C241T C3037T C12073T C14408T T22521K A23403G C24642T C27046T G28395K GGG28881AAC AAAAAAAAAAAAAAA29889-

EPI_ISL_439070
 2020-03-22 2020-05-12
 United Kingdom hCoV-19/Scotland/CVR388/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C12710T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_440018
 2020-03-22 2020-05-12
 United Kingdom hCoV-19/England/BRIS-122201/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A T25202K A27669G G29024K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_440202
 2020-03-22 2020-05-12
 United Kingdom hCoV-19/England/CAMB-734A2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T C11074T G11083T C14805T T25202K G26144T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_440231
 2020-03-22 2020-05-12
 United Kingdom hCoV-19/England/CAMB-73484/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G CC2558TT G11083T C14805T T25202K G26144T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_441371
 2020-03-22 2020-05-12
 United Kingdom hCoV-19/Northern Ireland/NIRE-102058/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C593Y C3037T C14408T A23403G GGG28881AAC

EPI_ISL_441372
 2020-03-22 2020-05-12
 United Kingdom hCoV-19/Northern Ireland/NIRE-102067/2020
 ATTA1- C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_441404
 2020-03-22 2020-05-12
 United Kingdom hCoV-19/Northern Ireland/NIRE-10235F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- C241T C3037T G10097A T13216G C14408T A23403G C23731T GGG28881AAC

EPI_ISL_443282
 2020-03-22 2020-05-12
 France hCoV-19/France/B5458/2020
 C241T C3037T C14408T G20024T A23403G C27923T GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_444611
 2020-03-22 2020-05-14
 Australia hCoV-19/Australia/QLDID937/2020
 ATTAAAGGTTTATACCTT1- C241T C313T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_444983
 2020-03-22 2020-05-14
 Spain hCoV-19/Spain/Barcelona_VH5994/2020
 ATTAAAGGTTTATACCTTC1- C241T C3037T C14408T A20268G A23403G

EPI_ISL_445166
 2020-03-22 2020-05-15
 United States hCoV-19/USA/CA-SR0312/2020
 C241T C3037T C14408T A21137G A23403G A26530G

EPI_ISL_445292
 2020-03-22 2020-05-15
 Chile hCoV-19/Chile/Punta_Arenas_11/2020
 ATTAAA1- C241T C1059T C3037T C14408T A23229G A23403G G25563T ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_445299
 2020-03-22 2020-05-15
 Chile hCoV-19/Chile/Punta_Arenas_15/2020
 ATT1GCA AA5CCT C241T C1059T C3037T C14408T A23403G G25563T C29358T G29861A ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_445355
 2020-03-22 2020-05-15
 Chile hCoV-19/Chile/Santiago_59/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C14408T A20268G A23348C A23403G TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_445368
 2020-03-22 2020-05-15
 Chile hCoV-19/Chile/Santiago_72/2020
 TTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATC2- C241T G1319A C3037T C8389T C14408T A23403G G25563T G27439K TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_447167 MT506663
 2020-03-22 2020-05-16
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20196/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_447174 MT506668
 2020-03-22 2020-05-16
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20203/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_447193 MT506666
 2020-03-22 2020-05-16
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20223/2020
 C241T C1059T C3037T G11083T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_447306
 2020-03-22 2020-05-17
 Israel hCoV-19/Israel/701002334/2020
 C241T C1059T C3037T C14408T G18079T G21123T A23403G G25563T AAAAAAAAAAAA29892-

EPI_ISL_447307
 2020-03-22 2020-05-17
 Israel hCoV-19/Israel/701002327/2020
 C241T C829T C1059T G2095A C3037T G7295T C14408T C16575T G19800T A23403G G25563T AAAAAAAAAAAA29892-

EPI_ISL_447319
 2020-03-22 2020-05-17
 Israel hCoV-19/Israel/51141225/2020
 C10369T G11083T C14805T T17247C C17676T G22865T G26144T G26660T C29627T AGT29746- AAAAAAAAAAAA29892-

EPI_ISL_447321
 2020-03-22 2020-05-17
 Israel hCoV-19/Israel/51141014/2020
 C241T C313T C3037T C14408T A23403G GGG28881AAC G28908T AAAAAAAAAAAA29892-

EPI_ISL_450008
 2020-03-22 2020-05-19
 United States hCoV-19/USA/NY-PV09316/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T C1059T C3037T C14408T A23403G G25563T GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_451084
 2020-03-22 2020-05-23
 Australia hCoV-19/Australia/SAP044/2020
 C241T C3037T C14408T C15324T G22918T A23403G G28690T

EPI_ISL_451195
 2020-03-22 2020-05-23
 Uganda hCoV-19/Uganda/UG013/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- CT92TY T104Y C106Y T115Y T141C T148Y T153Y T172Y T191Y C241T T249Y T262Y ACA328RSW C1473T AT2826RY C16523A A23403G G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_451411
 2020-03-22 2020-05-25
 United States hCoV-19/USA/NY-NYUMC696/2020
 C241T C2416T C3037T C14408T A23403G G25563T

EPI_ISL_451429
 2020-03-22 2020-05-25
 United States hCoV-19/USA/NY-NYUMC714/2020
 C241T C3037T C14408T C18877T A23403G G25563T

EPI_ISL_451448
 2020-03-22 2020-05-25
 United States hCoV-19/USA/NY-NYUMC733/2020
 C241T C1059T C3037T C11224T C14408T C15720T A23403G G25563T

EPI_ISL_451453
 2020-03-22 2020-05-25
 United States hCoV-19/USA/NY-NYUMC738/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_451964 MT635445
 2020-03-22 2020-05-26
 Russia SARS-CoV-2/human/RUS/SCPM-O-cDNA-02/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAG1- C241T C3037T C14408T A23403G CTA29788TGC AT29792GA -29796CTTCT GC29800AG AAT29805CG TGT29809CAA AT29815CG A29819C TTT29821GCC G29825C GT29828AA CTATCCC29831- GTG29841ACA T29846G T29848A -T29850CC GCT29853AGC C29857T TA29859CG G29862C A29866G ACAA29869GTCC AA29874GG AAAAAAAAAAAAAAAAAAAAAAAAAAA29877CG

EPI_ISL_451970 MT637143
 2020-03-22 2020-05-26
 Russia SARS-CoV-2/human/RUS/SCPM-O-cDNA-08/2020
 A1GGAGAACAGATCTACAAGAGA TA3CG -7AGTTGGTT C241T C3037T C3373A C14408T A23403G GGG28881AAC AA29872GT A29890T A29892C AAAAAAAA29894TTCTCTGC A29903GC

EPI_ISL_452181
 2020-03-22 2020-05-27
 Italy hCoV-19/Italy/VR_20COV10-41/2020
 ATTA1- C241T C3037T C8334T C14408T C20081T A23403G GCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29783-

EPI_ISL_452203
 2020-03-22 2020-05-27
 India hCoV-19/India/NIV-4367/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C7823T C8782T G22468T T28144C G28878A G29742A A29827T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830T

EPI_ISL_452339
 2020-03-22 2020-05-27
 China hCoV-19/Beijing/DT-travelUSA04/2020
 C241T C3037T A23403G

EPI_ISL_452341
 2020-03-22 2020-05-27
 China hCoV-19/Beijing/DT-travelMX01/2020
 C241T C3037T A23403G

EPI_ISL_452355
 2020-03-22 2020-05-27
 China hCoV-19/Beijing/DT-travelUK01/2020
 C241T T1372C C3037T T6552G C14408T A23403G GGG28881AAC

EPI_ISL_453484
 2020-03-22 2020-05-27
 United Kingdom hCoV-19/Northern Ireland/NIRE-102331/2020
 ATTA1- A187G C241T C3037T T8473C C14408T A23403G

EPI_ISL_453485
 2020-03-22 2020-05-27
 United Kingdom hCoV-19/Northern Ireland/NIRE-102340/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C6573T C14408T A23403G C25528T GGG28881AAC

EPI_ISL_454163
 2020-03-22 2020-05-28
 Portugal hCoV-19/Portugal/PT0439/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T G4201T C14408T A23403G C26527T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454243
 2020-03-22 2020-05-28
 Portugal hCoV-19/Portugal/PT0519/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G C26058T A26530G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454244
 2020-03-22 2020-05-28
 Portugal hCoV-19/Portugal/PT0520/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- A2480G C2558T G11083T C14805T G26144T AGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29687-

EPI_ISL_454949
 2020-03-22 2020-05-29
 China hCoV-19/Wuhan/HB-WH4-195/2020
 T12109C G17602T G29706T

EPI_ISL_455697
 2020-03-22 2020-06-01
 Vietnam hCoV-19/Vietnam/VNHN_1528/2020
 C241T C3037T C14408T A23403G C27635T C27874T GGG28881AAC

EPI_ISL_455963
 2020-03-22 2020-06-01
 Belgium hCoV-19/Belgium/ULG-10175/2020
 C241T C3037T C6840T C9180T C11866T C14408T A23403G C27046T GGG28881AAC C29311T

EPI_ISL_455969
 2020-03-22 2020-06-01
 Belgium hCoV-19/Belgium/ULG-10181/2020
 C241T G1274T C2113T C3037T C7765T C14408T T15225C C15928T C17690T C18877T A23403G G25563T

EPI_ISL_456187
 2020-03-22 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1076/2020
 C3096T G11083T C12781T G13627T C14805T C15540T G17944T G26144T A28338G A29731G

EPI_ISL_456188
 2020-03-22 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1078/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_456215
 2020-03-22 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1380/2020
 C8782T C17747T A17858G C18060T A24694T T28144C G28812T

EPI_ISL_456220
 2020-03-22 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1454/2020
 C3096T G11083T C12781T G13627T C14805T C15540T G17944T G26144T A28338G

EPI_ISL_456221
 2020-03-22 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1499/2020
 G1440A G2891A C10507T A28675T

EPI_ISL_456257
 2020-03-22 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1798/2020
 G11083T C14805T C14928T T17247C G26144T

EPI_ISL_456258
 2020-03-22 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1799/2020
 G11083T C14805T T17247C G26144T

EPI_ISL_457157
 2020-03-22 2020-06-02
 United Kingdom hCoV-19/England/EXET-135D0A/2020
 C241T C3037T C14408T A23403G C25350T C29028A

EPI_ISL_457991
 2020-03-22 2020-06-02
 Oman hCoV-19/Oman/RESP-20-4736/2020
 A1924G C8782T G11230T T28144C G28167A G28878A G29742A

EPI_ISL_457992
 2020-03-22 2020-06-02
 Oman hCoV-19/Oman/RESP-20-4810/2020
 C241T C3037T G10265A C14408T C16293T A23403G GGG28881AAC

EPI_ISL_458591
 2020-03-22 2020-06-04
 United Kingdom hCoV-19/England/NORT-288DBC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C2091T G11083T C14805T T17247C C25701T G26144T ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_459513
 2020-03-22 2020-06-04
 United Kingdom hCoV-19/Scotland/GCVR-170310/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G C5986T C9223T G11083T C14805T T17247C T22965C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_459867
 2020-03-22 2020-06-04
 Canada hCoV-19/Canada/ON_QGLO-02/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25217T G25563T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_460054
 2020-03-22 2020-06-05
 United States hCoV-19/USA/MN-MDH-150/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C5239T C14408T A23403G G25563T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_460097 MT520172
 2020-03-22 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00568/2020
 ATTAAAGGTTTATACCT1- C241T C2416T C3037T C14408T A23403G G25563T G26233T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_460118 MT520193
 2020-03-22 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00678/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C1059T C3037T C12809T C14408T A23403G G25563T C26625T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_460125 MT520200
 2020-03-22 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00562/2020
 ATTAAAGGTTTATA1- G105T C241T C3037T C14408T C18877T C21614T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_460140 MT520215
 2020-03-22 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00569/2020
 ATTAAAGGTTTATACCTTCCCAG1- G2144T A2480G C2558T G11083T C14805T G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_460180 MT520255
 2020-03-22 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00570/2020
 ATTAAAGGTTTAT1- C241T C1059T C3037T T6069C C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_460186 MT520261
 2020-03-22 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00563/2020
 ATTAAAGGTTTATACCTT1- T490A C3177T C6040T C8782T G12478A T18736C C24034T T26729C G28077C T28144C C28896G A29700G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_460231 MT520306
 2020-03-22 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00680/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C2416T C3037T C14408T A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_460232 MT520307
 2020-03-22 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00555/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- T490A C3177T C8782T G18106T T18736C C24034T T26729C G28077C T28144C C28697T G29440A A29700G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_460267 MT520342
 2020-03-22 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00681/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C1059T C3037T C14408T A23403G G25352T G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460285 MT520360
 2020-03-22 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00566/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- T490A C3177T C8782T A10317G T13180C C16084T T18736C C24034T T26729C G28077C T28144C A29700G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_460316 MT520391
 2020-03-22 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00134/2020
 ATTAAA1- C241T C2416T C3037T C11752T C14408T A23403G G25563T G26233T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_460423 MT520498
 2020-03-22 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00565/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T TGGTCATGTTATGGT508- C1059T C3037T C14408T A23403G G25563T G28980T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460465 MT520540
 2020-03-22 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00679/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T T956A C3037T C3241T C14408T T19225G A23403G A26530G G28851T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460695
 2020-03-22 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_522/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G20275A A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460697
 2020-03-22 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_524/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G20275A A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460700
 2020-03-22 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_527/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G20275A A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460820
 2020-03-22 2020-06-06
 Netherlands hCoV-19/Netherlands/Overijssel_30/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C7749T T13006C C14408T A23403G G25563T C25688T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461150
 2020-03-22 2020-06-06
 Netherlands hCoV-19/Netherlands/NoordBrabant_115/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- G14712T C16329T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461153
 2020-03-22 2020-06-06
 Netherlands hCoV-19/Netherlands/NoordBrabant_118/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- C17410T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461285
 2020-03-22 2020-06-06
 Netherlands hCoV-19/Netherlands/Zeeland_46/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1537C C3037T G4399T T13006C C14408T G19684T A23403G G25563T C25688T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461289
 2020-03-22 2020-06-06
 Netherlands hCoV-19/Netherlands/Zeeland_7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461291
 2020-03-22 2020-06-06
 Netherlands hCoV-19/Netherlands/Zeeland_9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4255T C14408T A23403G A26530G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_462209
 2020-03-22 2020-06-08
 Belgium hCoV-19/Belgium/DC-0322355/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C9836A G10098A G11083T C11580T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462265
 2020-03-22 2020-06-08
 Belgium hCoV-19/Belgium/MT-0322411/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3587T C14408T C21618T A23403G A24862G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462460
 2020-03-22 2020-06-08
 Bosnia and Herzegovina hCoV-19/Bosnia and Herzegovina/ChVir7354/2020
 ATTAAAGGTTT1- C241T C3037T C10336T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_462917
 2020-03-22 2020-06-08
 United States hCoV-19/USA/WY-WYPHL-00024/2020
 ATT1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T AA29902-

EPI_ISL_463742
 2020-03-22 2020-06-10
 Cyprus hCoV-19/Cyprus/002/2020
 C241T A2869G C3037T C14408T C17733T A23403G GGG28881AAC C29095T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_468135
 2020-03-22 2020-06-16
 Romania hCoV-19/Romania/Bucuresti-4284/2020
 ATTAAA1- C241T C3037T C14408T A20268G A23403G AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_468136
 2020-03-22 2020-06-16
 Romania hCoV-19/Romania/Bucuresti-4322/2020
 ATTA1- C241T C3037T A7201G C14408T A20268G A23403G C27707T -29904AAAAAAAAAA

EPI_ISL_468137
 2020-03-22 2020-06-16
 Romania hCoV-19/Romania/Suceava-4682/2020
 ATTA1- C241T C3037T C3225A C14408T A20268G A23403G A23734G C27707T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_468310
 2020-03-22 2020-06-16
 Brazil hCoV-19/Brazil/SPBR-144/2020
 G23T C241T C3037T G12111A C14408T A23403G T27299C GGG28881AAC T29148C AAAAAAAAAAAAA29891-

EPI_ISL_468515 MT628238
 2020-03-22 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1585/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C1091M C4776T C8782T C14267Y C17747T A17858G C18060T G28086T T28144C G29017K

EPI_ISL_469224
 2020-03-22 2020-06-18
 Canada hCoV-19/Canada/NL_82/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1918C C3037T C14408T C18877T A23403G G24926T G25563T G28703K ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_469226
 2020-03-22 2020-06-18
 Canada hCoV-19/Canada/NL_84/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T C25688T ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_469228
 2020-03-22 2020-06-18
 Canada hCoV-19/Canada/NL_86/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T C25688T ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_469233
 2020-03-22 2020-06-18
 Canada hCoV-19/Canada/NL_93/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T C25688T ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_469234
 2020-03-22 2020-06-18
 Canada hCoV-19/Canada/NL_95/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T10561C C14408T C15324T A23403G ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_469235
 2020-03-22 2020-06-18
 Canada hCoV-19/Canada/NL_96/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T C25688T ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_469236
 2020-03-22 2020-06-18
 Canada hCoV-19/Canada/NL_97/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T10561C C14408T C15324T A23403G ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_469237
 2020-03-22 2020-06-18
 Canada hCoV-19/Canada/NL_98/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T T19700Y A23403G G25563T T28930C ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_469238
 2020-03-22 2020-06-18
 Canada hCoV-19/Canada/NL_99/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T C25688T ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_469239
 2020-03-22 2020-06-18
 Canada hCoV-19/Canada/NL_100/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T C25688T ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_469240
 2020-03-22 2020-06-18
 Canada hCoV-19/Canada/NL_101/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T C26625T ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_470848
 2020-03-22 2020-06-19
 Australia hCoV-19/Australia/WA31/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C241T C1059T C3037T C10851T C14408T G20931T A23403G C23439T G25563T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_470872
 2020-03-22 2020-06-19
 Australia hCoV-19/Australia/WA55/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_471211
 2020-03-22 2020-06-19
 United States hCoV-19/USA/WI-WSLH-200046/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3871T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471213
 2020-03-22 2020-06-19
 United States hCoV-19/USA/WI-WSLH-200048/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C8782T T18736C C23525T C24034T T26729C A27234T C27635T G28077C T28144C A29567C A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471225
 2020-03-22 2020-06-19
 United States hCoV-19/USA/WI-WSLH-200060/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471545
 2020-03-22 2020-06-22
 Brazil hCoV-19/Brazil/SP-601/2020
 C241T C3037T A6319G C14408T A23403G G25088T T26149C GGG28881AAC GG29861CA AAAAAAAAAAAAA29891-

EPI_ISL_475098
 2020-03-22 2020-06-23
 Sweden hCoV-19/Sweden/20-08328/2020
 C241T C3037T C14408T G21786A A23403G G25494T G29009A

EPI_ISL_475140
 2020-03-22 2020-06-23
 Sweden hCoV-19/Sweden/20-08339/2020
 C241T C3037T T4171C C14195A C14408T T14462C TT14466CC T14476C T14555C A19810G A19812G A19840G T20459C T21217C A21390G A21415G A21417G A21421G A21436G A21444G A23403G

EPI_ISL_475330
 2020-03-22 2020-06-23
 United Kingdom hCoV-19/England/PORT-2D1121/2020
 C241T C3037T C14408T C16289T A23403G G25429T

EPI_ISL_475478
 2020-03-22 2020-06-23
 United Kingdom hCoV-19/England/SHEF-CF4F2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C12885T G17110T C19011T G28221T G29032A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475578
 2020-03-22 2020-06-23
 United States hCoV-19/USA/CA-CSMC103/2020
 C241T C1059T A2018G C3037T C14408T C18029T A19453G A23403G G25563T

EPI_ISL_475584
 2020-03-22 2020-06-23
 United States hCoV-19/USA/CA-CSMC109/2020
 C241T C8782T TTGA18737- GGG28881AAC

EPI_ISL_475586
 2020-03-22 2020-06-23
 United States hCoV-19/USA/CA-CSMC110/2020
 C1929T A2767G T5290C T7402C C8782T T8850C C14614T T15818G C17333A C17747T A19574C G19599T C19698T G20580T G20922T T22587G T23158A T23336C G23508T G25278T C26124T C26728T C26894T T27444C T28144C C28278T

EPI_ISL_475589
 2020-03-22 2020-06-23
 United States hCoV-19/USA/CA-CSMC113/2020
 C241T T348A A1631C A6018G T6791A G6793T C6797G T8620C C10541A A12413C C18877T A23403G G25563T

EPI_ISL_475716
 2020-03-22 2020-06-23
 United States hCoV-19/USA/CA-CSMC99/2020
 C241T C3037T C12420T C13436T C14408T C18877T G21533A A23403G G25563T G27750A G28812T

EPI_ISL_475845
 2020-03-22 2020-06-25
 Austria hCoV-19/Austria/CeMM0417/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5149K C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475864
 2020-03-22 2020-06-25
 Austria hCoV-19/Austria/CeMM0441/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G G24197T G25563T C26735T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476819
 2020-03-22 2020-06-26
 Singapore hCoV-19/Singapore/274nan/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G3351A C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477175
 2020-03-22 2020-06-29
 Singapore hCoV-19/Singapore/485/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- GTCATGTTA510- G29254A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477178
 2020-03-22 2020-06-29
 Singapore hCoV-19/Singapore/278nan/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G15760A A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477618
 2020-03-22 2020-06-29
 Hungary hCoV-19/Hungary/US-2587w/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C14937T C15324T T18495C A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477680
 2020-03-22 2020-06-29
 United States hCoV-19/USA/ID-UW-2047/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C241T T833C C1059T C3037T C10833T C14408T C21575T A23403G G25563T C27964T C29870-

EPI_ISL_477681
 2020-03-22 2020-06-29
 United States hCoV-19/USA/ID-UW-2067/2020
 TAAAGGTTTATACCTTCCCAGGTAACAAA3- C36T C241T C1059T C3037T C14408T A16387T A23403G T24749C G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_478558
 2020-03-22 2020-06-30
 United Kingdom hCoV-19/England/NORT-28463D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G27996T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478559
 2020-03-22 2020-06-30
 United Kingdom hCoV-19/England/NORT-28464C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1912T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478561
 2020-03-22 2020-06-30
 United Kingdom hCoV-19/England/NORT-284697/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479625
 2020-03-22 2020-07-01
 Canada hCoV-19/Canada/NB-202/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G11083T C14805T G26144T ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_482583
 2020-03-22 2020-07-04
 China hCoV-19/Hangzhou/HZCDC7184F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G C23575T A26939G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_483007
 2020-03-22 2020-07-06
 United States hCoV-19/USA/MN-MDH-1286/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C3037T C14408T A23403G G25563T C28291T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_483090
 2020-03-22 2020-07-07
 Australia hCoV-19/Australia/SAP303/2020
 AT1- C4540T C8782T T9477A C14805T G25979T G27204T T28144C C28311T C28657T C28863T

EPI_ISL_483122
 2020-03-22 2020-07-07
 Australia hCoV-19/Australia/SAP346/2020
 AT1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T

EPI_ISL_483124
 2020-03-22 2020-07-07
 Australia hCoV-19/Australia/SAP349/2020
 ATTA1- C241T C3037T T7438C C14408T A23403G C29353T

EPI_ISL_484763
 2020-03-22 2020-07-08
 United States hCoV-19/USA/MI-UM-2006S000935/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485945
 2020-03-22 2020-07-10
 United States hCoV-19/USA/ID-UW-2041/2020
 T2G A6C A31T C36T C8782T C17747T A17858G C18060T C23635T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_486424
 2020-03-22 2020-07-10
 Latvia hCoV-19/Latvia/041/2020
 C241T C504T C2416T C3037T C14408T A23403G G25563T A27421G

EPI_ISL_486425
 2020-03-22 2020-07-10
 Latvia hCoV-19/Latvia/042/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_486426
 2020-03-22 2020-07-10
 Latvia hCoV-19/Latvia/044/2020
 G18445A C19488T

EPI_ISL_486428
 2020-03-22 2020-07-10
 Latvia hCoV-19/Latvia/045/2020
 C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_486430
 2020-03-22 2020-07-10
 Latvia hCoV-19/Latvia/046/2020
 C241T C1218T C3037T C4230T T6168C G10447A C14408T C17104T C19813T A20268G A23403G T29317C G29734C

EPI_ISL_488490
 2020-03-22 2020-07-14
 United Kingdom hCoV-19/England/NORT-284688/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G6653A C9170T G11083T C14805T T25202K G26144T C26571T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488667
 2020-03-22 2020-07-14
 United Kingdom hCoV-19/England/NORT-2844F7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1350T A2480G C2558T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488747
 2020-03-22 2020-07-14
 United Kingdom hCoV-19/England/NORT-281991/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C19170T G19509A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488759
 2020-03-22 2020-07-14
 United Kingdom hCoV-19/England/NORT-281A8F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488813
 2020-03-22 2020-07-14
 United Kingdom hCoV-19/England/NORT-2819FB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488825
 2020-03-22 2020-07-14
 United Kingdom hCoV-19/England/NORT-2819A0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G116R C241T C3037T C14408T C14724T C19170T G19509A A23403G G28077T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489708
 2020-03-22 2020-07-14
 Czech Republic hCoV-19/Czech Republic/NRL_5556/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T9477A C14805T A22151G G25979T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492136
 2020-03-22 2020-07-20
 Australia hCoV-19/Australia/SAP371/2020
 A1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28744T C28863T

EPI_ISL_492142
 2020-03-22 2020-07-20
 Australia hCoV-19/Australia/SAP377/2020
 AT1- G1440A G2891A C4668T T6668C G11083T

EPI_ISL_492144
 2020-03-22 2020-07-20
 Australia hCoV-19/Australia/SAP379/2020
 ATT1- C4540T C8782T T9477A C14805T T19551C G25979T T28144C C28311T C28657T C28863T

EPI_ISL_492148
 2020-03-22 2020-07-20
 Australia hCoV-19/Australia/SAP383/2020
 ATTA1- C241T C1489T C3037T C14408T A20268G A23403G

EPI_ISL_492154
 2020-03-22 2020-07-20
 Australia hCoV-19/Australia/SAP389/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C11355T C14408T A23403G C23683T GGG28881AAC

EPI_ISL_492163
 2020-03-22 2020-07-20
 Australia hCoV-19/Australia/SAP398/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C4540T A8651C C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T

EPI_ISL_492607
 2020-03-22 2020-07-20
 United Kingdom hCoV-19/England/BRIS-130CA8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A11782G C14408T G22203T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492634
 2020-03-22 2020-07-20
 United Kingdom hCoV-19/England/BRIS-130C5D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T C9541Y G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_495012
 2020-03-22 2020-07-22
 Canada hCoV-19/Canada/LTRI-23/2020
 ATTAAAGGTTTAT1- C241T C1059T C1387T C3037T C14408T A20755C A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495595
 2020-03-22 2020-07-23
 United States hCoV-19/USA/MI-UM-2006S005727/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G7756T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_497738
 2020-03-22 2020-07-25
 Colombia hCoV-19/Colombia/84730/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_497808
 2020-03-22 2020-07-25
 China hCoV-19/Hong Kong/HKU-200723-041/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C228T G1397A G9479T A9514G G11083T A23712G G26720C T28688C T28835C G29742T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_497847
 2020-03-22 2020-07-25
 China hCoV-19/Hong Kong/HKU-200723-080/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C17750T C18744T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498044
 2020-03-22 2020-07-26
 South Korea hCoV-19/Korea/KCDC2143/2020
 ATT1- C241T C3037T C14408T T19839C C21575T A23403G GGG28881AAC G29751A

EPI_ISL_498045
 2020-03-22 2020-07-26
 South Korea hCoV-19/Korea/KCDC2144/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- C241T C1059T C3037T C14408T A23403G G25563T G26769A

EPI_ISL_498046
 2020-03-22 2020-07-26
 South Korea hCoV-19/Korea/KCDC2145/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_498049
 2020-03-22 2020-07-26
 South Korea hCoV-19/Korea/KCDC2148/2020
 A1- A3058G C4093T G4127A G11083T C14805T T17247C G20041A G26109T G26144T

EPI_ISL_498050
 2020-03-22 2020-07-26
 South Korea hCoV-19/Korea/KCDC2149/2020
 ATTA1- C241T C1059T C3037T T4063C C14408T A23403G G25563T C26124T

EPI_ISL_498051
 2020-03-22 2020-07-26
 South Korea hCoV-19/Korea/KCDC2150/2020
 C241T C3037T C14408T G20176T A23403G GGG28881AAC

EPI_ISL_498264
 2020-03-22 2020-07-27
 Thailand hCoV-19/Thailand/Bangkok-CONI-0192/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C3037T C14408T A23403G G24368T G25563T

EPI_ISL_499303
 2020-03-22 2020-07-28
 United Kingdom hCoV-19/England/PORT-2D221E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1457T A2480G C2558T G11083T C14805T G26144T C26340T G28851A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_499304
 2020-03-22 2020-07-28
 United Kingdom hCoV-19/England/PORT-2D222D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1457T A2480G C2558T C9165T C9180T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_500421
 2020-03-22 2020-07-28
 Spain hCoV-19/Spain/COV005987/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T G18816T A20268G A23403G C28854T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_500427
 2020-03-22 2020-07-28
 Spain hCoV-19/Spain/COV005995/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C1059T C3037T T13006C C14408T G17302T A23403G G25563T C25688T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_500428
 2020-03-22 2020-07-28
 Spain hCoV-19/Spain/COV005996/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C1059T C3037T T13006C C14408T G17302T A23403G G25563T C25688T GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_500515
 2020-03-22 2020-07-29
 United States hCoV-19/USA/GA-UW-MAYO64/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TH T490A C3177T A6355T C8782T T18736C C24034T T26729C C27635T G28077C T28144C A29700G CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_500599
 2020-03-22 2020-07-29
 Australia hCoV-19/Australia/NSW2013/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C17518T A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500600
 2020-03-22 2020-07-29
 Australia hCoV-19/Australia/NSW2014/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T2402A C3037T C14408T A20268G A23403G G29734C CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500609
 2020-03-22 2020-07-29
 Australia hCoV-19/Australia/NSW2037/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T C18086T G26144T G28842T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500610
 2020-03-22 2020-07-29
 Australia hCoV-19/Australia/NSW2038/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T C18086T G26144T G28842T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500611
 2020-03-22 2020-07-29
 Australia hCoV-19/Australia/NSW2039/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T C18086T G26144T G28842T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500620
 2020-03-22 2020-07-29
 Australia hCoV-19/Australia/NSW2050/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17747T A17858G C18060T A24694T T28144C CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500662
 2020-03-22 2020-07-29
 Australia hCoV-19/Australia/NSW2202/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500663
 2020-03-22 2020-07-29
 Australia hCoV-19/Australia/NSW2203/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17747T A17858G C18060T A24694T T28144C CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500679
 2020-03-22 2020-07-29
 Australia hCoV-19/Australia/NSW2237/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500680
 2020-03-22 2020-07-29
 Australia hCoV-19/Australia/NSW2238/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T C27128T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500681
 2020-03-22 2020-07-29
 Australia hCoV-19/Australia/NSW2239/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3261T C14408T A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500682
 2020-03-22 2020-07-29
 Australia hCoV-19/Australia/NSW2242/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10851T C14408T A23403G G25563T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500683
 2020-03-22 2020-07-29
 Australia hCoV-19/Australia/NSW2243/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10851T C14408T A23403G G25563T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500684
 2020-03-22 2020-07-29
 Australia hCoV-19/Australia/NSW2244/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T G25879T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500686
 2020-03-22 2020-07-29
 Australia hCoV-19/Australia/NSW2247/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500687
 2020-03-22 2020-07-29
 Australia hCoV-19/Australia/NSW2248/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10851T C14408T A23403G G25563T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500690
 2020-03-22 2020-07-29
 Australia hCoV-19/Australia/NSW2251/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A15175G A23403G G29315T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500691
 2020-03-22 2020-07-29
 Australia hCoV-19/Australia/NSW2252/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C14408T C14786T G20578T A23403G G25563T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500692
 2020-03-22 2020-07-29
 Australia hCoV-19/Australia/NSW2253/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8078T G10754A G11083T C14805T T17247C G26144T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500694
 2020-03-22 2020-07-29
 Australia hCoV-19/Australia/NSW2257/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500697
 2020-03-22 2020-07-29
 Australia hCoV-19/Australia/NSW2261/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C8782T T18736C G19684T C24034T T26729C C27635T G28068T G28077C T28144C A29700G CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500698
 2020-03-22 2020-07-29
 Australia hCoV-19/Australia/NSW2262/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4540T C8782T T9477A C14805T G25979T T28144C C28657T C28863T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500699
 2020-03-22 2020-07-29
 Australia hCoV-19/Australia/NSW2263/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4540T C8782T T9477A C14805T C17104T G25979T T28144C C28311T C28657T C28863T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500700
 2020-03-22 2020-07-29
 Australia hCoV-19/Australia/NSW2265/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T AAGTCATTT686- C1059T C3037T C14408T A23403G G25563T C27964T C28099T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500701
 2020-03-22 2020-07-29
 Australia hCoV-19/Australia/NSW2266/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C17518T A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_501177
 2020-03-22 2020-07-31
 Malaysia hCoV-19/Malaysia/0309/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T TA2922AT CA2937TG C3037T C14408T A23403G GGG28881AAC AACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29694-

EPI_ISL_507057
 2020-03-22 2020-08-03
 United Kingdom hCoV-19/England/LOND-124D14B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C20844T A23403G C26534T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_507058
 2020-03-22 2020-08-03
 United Kingdom hCoV-19/England/LOND-124D15A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23403G GGG28881AAC GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_507694
 2020-03-22 2020-08-03
 United States hCoV-19/USA/MI-MDHHS-SC21440/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T C1059T G1890K C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507704
 2020-03-22 2020-08-03
 United States hCoV-19/USA/MI-MDHHS-SC21450/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C14408T A23403G G25563T C27494T TGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29840-

EPI_ISL_507709
 2020-03-22 2020-08-03
 United States hCoV-19/USA/MI-MDHHS-SC21455/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25563T TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_507905
 2020-03-22 2020-08-03
 United States hCoV-19/USA/MI-MDHHS-SC21129/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T A6505T C14408T A23403G G25563T C25976A CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_508125
 2020-03-22 2020-08-04
 Australia hCoV-19/Australia/SAP434/2020
 ATTA1- G11083T C14805T G26144T C26606T G28842T A29903-

EPI_ISL_508126
 2020-03-22 2020-08-04
 Australia hCoV-19/Australia/SAP435/2020
 ATTA1- C28T C241T C3037T C14408T A23403G AA29902-

EPI_ISL_508139
 2020-03-22 2020-08-04
 Australia hCoV-19/Australia/SAP448/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T G15732T T19143C A20268G A23403G

EPI_ISL_508792 MT834636
 2020-03-22 2020-08-04
 United States SARS-CoV-2/human/USA/FL-BPHL-0588/2020
 ATTAAAGGT1- C241T C1059T C3037T C9924T C13911T C14408T G22363T A23403G G25563T C28948T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_508863
 2020-03-22 2020-08-04
 Madagascar hCoV-19/Madagascar/Antananarivo-01861/2020
 ATTAAAGGTTT1- T13Y C241T C2416T C3037T C5884T C14408T A23403R G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_508950
 2020-03-22 2020-08-04
 France hCoV-19/France/ARA12282/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C1426T C3037T C14408T C18029T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_508951
 2020-03-22 2020-08-04
 France hCoV-19/France/ARA12287/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCA1- C241T C3037T C14408T C14676T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_509006
 2020-03-22 2020-08-04
 France hCoV-19/France/ARA12197/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C3096T C14408T A16070G A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_509493
 2020-03-22 2020-08-05
 Australia hCoV-19/Australia/NSW2034/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T C18086T G26144T G28842T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_509494
 2020-03-22 2020-08-05
 Australia hCoV-19/Australia/NSW2051/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17747T A17858G C18060T A24694T T28144C CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_509515
 2020-03-22 2020-08-05
 Australia hCoV-19/Australia/NSW2236/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17747T A17858G C18060T A24694T T28144C CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_509516
 2020-03-22 2020-08-05
 Australia hCoV-19/Australia/NSW2241/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4540T C8782T T9477A C14805T G25979T C27999T T28144C C28311T C28657T C28863T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_509517
 2020-03-22 2020-08-05
 Australia hCoV-19/Australia/NSW2273/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17747T A17858G C18060T A24694T T28144C CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_509518
 2020-03-22 2020-08-05
 Australia hCoV-19/Australia/NSW2274/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17747T A17858G C18060T A24694T T28144C CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_510966
 2020-03-22 2020-08-07
 Portugal hCoV-19/Portugal/PT0707/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C6504A C14408T C15925T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511006
 2020-03-22 2020-08-07
 Portugal hCoV-19/Portugal/PT0747a/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGA1- C241T G376T C1059T C3037T T13006C C14408T A23403G G25563T C25688T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511008
 2020-03-22 2020-08-07
 Portugal hCoV-19/Portugal/PT0749/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTA1- G1440A C2143T G2891A C10507T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511092
 2020-03-22 2020-08-07
 Portugal hCoV-19/Portugal/PT0833/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511093
 2020-03-22 2020-08-07
 Portugal hCoV-19/Portugal/PT0834/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C2416T C3037T A13711G C14408T C14786T C19884T G22093A A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511094
 2020-03-22 2020-08-07
 Portugal hCoV-19/Portugal/PT0835/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC G29711A TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511095
 2020-03-22 2020-08-07
 Portugal hCoV-19/Portugal/PT0836/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- A7479G G11083T C14805T T17247C C25572T G26144T C28887T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511096
 2020-03-22 2020-08-07
 Portugal hCoV-19/Portugal/PT0837/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC C29025T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511097
 2020-03-22 2020-08-07
 Portugal hCoV-19/Portugal/PT0838/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G G26792T C26892T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511098
 2020-03-22 2020-08-07
 Portugal hCoV-19/Portugal/PT0839/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G G26792T C26892T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511099
 2020-03-22 2020-08-07
 Portugal hCoV-19/Portugal/PT0840/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511100
 2020-03-22 2020-08-07
 Portugal hCoV-19/Portugal/PT0841/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G319T C3037T C5284T C11788T C14408T G22205T A23403G A26530G C27476T C28854T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511101
 2020-03-22 2020-08-07
 Portugal hCoV-19/Portugal/PT0842/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C5167T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511102
 2020-03-22 2020-08-07
 Portugal hCoV-19/Portugal/PT0843/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511530
 2020-03-22 2020-08-08
 Portugal hCoV-19/Portugal/PT0981/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- G91A C241T C3037T G11083T C14408T C15324T A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511531
 2020-03-22 2020-08-08
 Portugal hCoV-19/Portugal/PT0983/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T A10323G A12475G C13680T C14408T A23403G A26530G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511532
 2020-03-22 2020-08-08
 Portugal hCoV-19/Portugal/PT0984/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T C17104T A20268G A23403G C27230T G29734C TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511533
 2020-03-22 2020-08-08
 Portugal hCoV-19/Portugal/PT0985/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T C16887T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511542
 2020-03-22 2020-08-08
 Portugal hCoV-19/Portugal/PT0994/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3140T G12442A C13059T C14408T A23403G G24077T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511543
 2020-03-22 2020-08-08
 Portugal hCoV-19/Portugal/PT0995/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3140T C13059T C14408T A23403G G24077T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511544
 2020-03-22 2020-08-08
 Portugal hCoV-19/Portugal/PT0996/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C11455T G13897T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511545
 2020-03-22 2020-08-08
 Portugal hCoV-19/Portugal/PT0997/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T T7852C C14408T C21242T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511546
 2020-03-22 2020-08-08
 Portugal hCoV-19/Portugal/PT0998/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T G11083T C14408T A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511549
 2020-03-22 2020-08-08
 Portugal hCoV-19/Portugal/PT1001/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511719
 2020-03-22 2020-08-08
 Portugal hCoV-19/Portugal/PT1173/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T C19884T A23403G G26792T C26892T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511720
 2020-03-22 2020-08-08
 Portugal hCoV-19/Portugal/PT1174/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T G13348T C14408T A20268G A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_512657
 2020-03-22 2020-08-11
 Costa Rica hCoV-19/Costa Rica/INC-0051/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC A29839G GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_513302 MT704820
 2020-03-22 2020-07-03
 Germany SARS-CoV-2/human/DEU/SCoV2_5ZK/2020
 C241T C3037T G3955T C14408T A23403G G25534T C27046T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_513303 MT704821
 2020-03-22 2020-07-03
 Germany SARS-CoV-2/human/DEU/SCoV2_6ZK/2020
 C241T C3037T T3478A G3955T C14408T A23403G G25534T C27046T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_513304 MT704822
 2020-03-22 2020-07-03
 Germany SARS-CoV-2/human/DEU/SCoV2_7ZK/2020
 C241T C3037T G3955T C14408T A23403G G25534T C27046T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_513497 MT886373
 2020-03-22 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0088/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTG1- C241T C3037T C14408T C22450T A23403G AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_514465
 2020-03-22 2020-08-17
 United Kingdom hCoV-19/England/PORT-2D175C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_515181
 2020-03-22 2020-08-18
 Ghana hCoV-19/Ghana/KATH23/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C203Y C8782T C24370T C25516Y G26363K T28144C G28878A G29402T G29742A CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_515321
 2020-03-22 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0036/2020
 AT1- C241T C1059T G1942T C2395A C3037T C12241T C14408T A23403G G25563T A26644C

EPI_ISL_515545
 2020-03-22 2020-08-19
 Brazil hCoV-19/Brazil/SP-533/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C3037T C13721A C14408T A23403G G25088T GGG28881AAC G29862A GAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29864-

EPI_ISL_515551
 2020-03-22 2020-08-19
 Brazil hCoV-19/Brazil/SP-544/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C13356T C14408T A23403G G25088T GGG28881AAC GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_516294
 2020-03-22 2020-08-20
 United States hCoV-19/USA/MI-MDHHS-SC21567/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C1059T C3037T C5301T C14408T G20356T A23403G G25563T TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_516302
 2020-03-22 2020-08-20
 United States hCoV-19/USA/MI-MDHHS-SC21575/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C5986T C14408T C16470T A23403G G25563T C26645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516306
 2020-03-22 2020-08-20
 United States hCoV-19/USA/MI-MDHHS-SC21579/2020
 ATTAAAGGTTTATACCT1- C241T C1059T C3037T C14408T A23403G G25563T ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_516803
 2020-03-22 2020-08-24
 Singapore hCoV-19/Singapore/831/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C3037T G13435A C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_518882 MT920022
 2020-03-22 2020-08-25
 United States SARS-CoV-2/human/USA/MN-MDH-1489/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25563T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_518883 MT920023
 2020-03-22 2020-08-25
 United States SARS-CoV-2/human/USA/MN-MDH-1490/2020
 ATTAAAGGTTTATACC1- C241T C379A C1059T C3037T C14408T G18340A A23403G G24332T G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_518884 MT920024
 2020-03-22 2020-08-25
 United States SARS-CoV-2/human/USA/MN-MDH-1491/2020
 C8782T G8792T A17858G C18060T A24694T T28144C AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_521887 MT969352
 2020-03-22 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC1845/2020
 ATTAAAGGTTT1- C3096T G11083T G13627T C14805T C15540T G26144T A27675C A28338G G29212T

EPI_ISL_525628
 2020-03-22 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-27593-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T G17242A A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_527010
 2020-03-22 2020-09-03
 Australia hCoV-19/Australia/NSW2254/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8078T G10754A G11083T C14805T T17247C G26144T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_528315
 2020-03-22 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42202026/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C9319T G11083T C14805T T17247C G26144T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_528316
 2020-03-22 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42202033/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T T14444C C15324T A23403G TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_528317
 2020-03-22 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42202078/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A20268G A23403G C25658T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_528318
 2020-03-22 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42202140/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T C21110T A23403G C28531T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528319
 2020-03-22 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42202147/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T T658C C3037T C14408T A23403G A24862G C28629T ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_528320
 2020-03-22 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42202148/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTT1- C241T C1059T C3037T C14408T A23403G G25563T TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_528323
 2020-03-22 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42202167/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- A187G C241T C3037T C14408T A23403G AATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29849-

EPI_ISL_528330
 2020-03-22 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42202260/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T C15324T A23403G G28881T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528331
 2020-03-22 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42202280/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C4893T C14408T A20268G C23380A A23403G G25483A C26509T TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_528332
 2020-03-22 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42202292/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C3037T C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528352
 2020-03-22 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42203375/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T C3037T C13957T C14408T C15324T G15982T T18436C A23403G TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_530043
 2020-03-22 2020-09-10
 Spain hCoV-19/Spain/MD-LP114/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T19839C A23403G GGG28881AAC ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_530269
 2020-03-22 2020-09-11
 Australia hCoV-19/Australia/QLD1009/2020/P1
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C14408T A23403G GGG28881AAC TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_530270
 2020-03-22 2020-09-11
 Australia hCoV-19/Australia/QLD1010/2020/P1
 AT1-S G2528A C6312A G11083T C13730T T14067C C23929T C28311T

EPI_ISL_530271
 2020-03-22 2020-09-11
 Australia hCoV-19/Australia/QLD1011/2020/P1
 AT1- C241T C313T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_534878
 2020-03-22 2020-09-14
 United Kingdom hCoV-19/England/OXON-B36A0/2020
 ATG1605- AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_534898
 2020-03-22 2020-09-14
 United Kingdom hCoV-19/England/OXON-B3A4A/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_535921
 2020-03-22 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00230482/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10360A C14408T C20404T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535944
 2020-03-22 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00231139/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1918C C3037T C14408T C18877T A23403G G25563T A29052T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535946
 2020-03-22 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00231158/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T A2219G C3037T C14408T C23185T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535947
 2020-03-22 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00231230/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535948
 2020-03-22 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00231249/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535949
 2020-03-22 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00231271/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25217T G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535952
 2020-03-22 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00231296/2020
 ATTA1- C241T C1059T C1387T C3037T C4993T C14408T A20755C A23403G G25563T TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_535954
 2020-03-22 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00231415/2020
 ATTAAA1- C241T C3037T C13517T C14408T A23403G C25350T C27673Y TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_535955
 2020-03-22 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00231416/2020
 ATTAAA1- C241T C3037T C8208T G9267A T9667C C14408T A23403G G25947T G28361A GGG28881AAC TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_535956
 2020-03-22 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00231456/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535957
 2020-03-22 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00231569/2020
 ATTAAA1- G4657A G11083T C14805T T17247C G26144T TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_535962
 2020-03-22 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00231779/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C28603T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535966
 2020-03-22 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00231946/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C593T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535967
 2020-03-22 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00231966/2020
 ATTAAA1- C241T C3037T C14408T C15324T A23403G C25433T T27444C C27847T TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_535971
 2020-03-22 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00232064/2020
 ATTAAA1- G5138T G11083T C14805T T17247C G26144T TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_535972
 2020-03-22 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00232070/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8293T C14408T T18488C A23403G T24739C A26530G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535973
 2020-03-22 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00232073/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8293T C14408T T18488C A23403G T24739C A26530G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535974
 2020-03-22 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00232080/2020
 ATTAAA1- C241T C3037T C14408T C15324T A23403G C25433T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_535975
 2020-03-22 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00232097/2020
 ATTAAA1- C241T C3037T C8208T G9267A T9667C C14408T A23403G G25947T G28361A GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_535976
 2020-03-22 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00232098/2020
 ATTAAA1- C241T C313T C3037T T13069G C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_535978
 2020-03-22 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00232107/2020
 AT1- C241T C3037T C8208T G9267A T9667C C14408T A23403G G25947T G28361A GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_535979
 2020-03-22 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00232113/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C313T C3037T T13069G C14408T A23403G GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_535981
 2020-03-22 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00232187/2020
 ATTA1- C241T C3037T C14408T C15324T A23403G A27675C A28765R CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_535982
 2020-03-22 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00232239/2020
 ATTAAA1- C241T C3037T C8208T G9267A T9667C C14408T A23403G G25947T G28361A GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_535983
 2020-03-22 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00232271/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- G7960T C8782T C17010T C17747T A17858G C18060T T28144C TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_535984
 2020-03-22 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00232310/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C635Y C3037T A6248C C14408T A20268G A23403G C25413T TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_535985
 2020-03-22 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00232405/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T C14408T A20268G A23403G C28854T TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_535986
 2020-03-22 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00232439/2020
 ATTAAAGGTTTATAC1- C241T C1059T C3037T C14408T A23403G G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_535987
 2020-03-22 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00232447/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1627Y C3037T C14408T A20268G A23403G C28854T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_535988
 2020-03-22 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00232511/2020
 ATTA1- C241T C3037T C8208T G9267A T9667C C10725T C14408T A23403G G25947T G28361A GGG28881AAC G29745T TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_535990
 2020-03-22 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00232603/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C3037T C14408T C15324T A23403G CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_535992
 2020-03-22 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00232614/2020
 ATTAAAG1- C241T C3037T C5184Y G6358K C14408T C15324T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_535994
 2020-03-22 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00232723/2020
 ATTAAAGGTTTATACCT1- C241T C3037T C14408T C19170T G19509A A23403G GGG28881AAC C29555Y TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_535995
 2020-03-22 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00232726/2020
 ATTAAA1- C3037Y G3113C G11083T C14805T T17247C G26144T TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_535998
 2020-03-22 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00232822/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C13620T C14408T C21772Y A23403G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_536002
 2020-03-22 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00232941/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T C8208T G9267A T9667C C14408T A23403G G25947T G28361A GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_536003
 2020-03-22 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00232949/2020
 ATTAAA1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_536005
 2020-03-22 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00232955/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T C14408T C23191T A23403G C27046T GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_536006
 2020-03-22 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00233003/2020
 ATTAAAGG1- C241T C3037T C8208T G9267A T9667C C14408T A23403G G25947T G28361A GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_536008
 2020-03-22 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00233063/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23403G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_536009
 2020-03-22 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00233115/2020
 ATTAAA1- C241T GTCATGTTA510- C3037T C8208T G9267A T9667C C14408T A23403G G25947T G28361A GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_536010
 2020-03-22 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00233169/2020
 ATTAAAGGTTTATACCTTCCCA1- C7321T C8782T C17747T A17858G C18060T A24694T T27968Y T28144C G28167R AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_536011
 2020-03-22 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00233171/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T C14408T A23403G G25563T C27964T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_536014
 2020-03-22 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00233281/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C3037T G8828A C12241Y C14408T G19009T A23403G G25563T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_536015
 2020-03-22 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00233316/2020
 ATTAAAGG1- A2480G C2558T G11083T C14805T G26144T G29742T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_536046
 2020-03-22 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00233970/2020
 ATTAAAGGTTT1- C241T C3037T C14408T C18877T G20083T A23403G G25563T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_536113
 2020-03-22 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00235866/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C14408T A23403G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_536114
 2020-03-22 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00235907/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- A1515G C9223T G11083T C14805T T17247C A17799G G26144T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_536230
 2020-03-22 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00239009/2020
 ATTAAAGGTTT1- C241T C3037T C14408T C15324T C16193T A22404T A23403G GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_536561
 2020-03-22 2020-09-16
 Peru hCoV-19/Peru/LIM-INS-168/2020
 A1- C4540T C8782T T9477A C14805T G25979T T28144C C28657T C28863T

EPI_ISL_537435
 2020-03-22 2020-09-16
 Spain hCoV-19/Spain/RI-CSIC-99005893/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C1059T C3037T T13006C C14408T G17302T A23403G G25563T C25688T GAGTACGATCGAGT29745- AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_537436
 2020-03-22 2020-09-16
 Spain hCoV-19/Spain/RI-CSIC-99005894/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_537440
 2020-03-22 2020-09-16
 Spain hCoV-19/Spain/RI-CSIC-99005901/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T T13006C C14408T G17302T A23403G G25563T C25688T C25734M AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_537809
 2020-03-22 2020-09-16
 Spain hCoV-19/Spain/CB-CSIC-98002760/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C679A C3037T C14408T A20268G A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_537810
 2020-03-22 2020-09-16
 Spain hCoV-19/Spain/CB-CSIC-98002761/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C6310T C10186Y C14408T G16078A C16887Y A20268G A23403G CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_538451
 2020-03-22 2020-09-17
 Singapore hCoV-19/Singapore/920/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T19839C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538822
 2020-03-22 2020-09-17
 United Kingdom hCoV-19/England/LEED-2AA0F7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C20270T A29683T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538965
 2020-03-22 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9E0D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539087
 2020-03-22 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A86CA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- AAGTCATTT686- C1190T G11083T C14805T G26144T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539284
 2020-03-22 2020-09-17
 Spain hCoV-19/Spain/VC-IBV-98003494/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A20268G A23403G C25452T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539285
 2020-03-22 2020-09-17
 Spain hCoV-19/Spain/VC-IBV-98003495/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C313T C3037T C4542M C13458Y C14408T G19150K A23403G GGG28881AAC C29585T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_539527
 2020-03-22 2020-09-18
 Spain hCoV-19/Spain/CM-ISCIII-202018234/2020
 C241T C3037T C14408T A20268G A23403G C26894T A29714G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_539528
 2020-03-22 2020-09-18
 Spain hCoV-19/Spain/CM-ISCIII-202018271/2020
 C241T C3037T C14408T A20268G T22440C A23403G G29734C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_539529
 2020-03-22 2020-09-18
 Spain hCoV-19/Spain/CM-ISCIII-202018315/2020
 T42A C241T C3037T T3577C C3583T T3668A C14408T T19538A A20268G T21195C A23403G G29734C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_539573
 2020-03-22 2020-09-19
 Gabon hCoV-19/Gabon/ITM-K011/2020
 C8782T G13148A G22468T T28144C G28878A G29742A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_542187
 2020-03-22 2020-09-23
 Italy hCoV-19/Italy/LOM-UniMI-L197/2020
 ATTAAAGGTTTATAC1- C241T C3037T C14408T A23403G C26681T GGG28881AAC AACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29767-

EPI_ISL_547449
 2020-03-22 2020-09-24
 Netherlands hCoV-19/Aruba/AW-RIVM-10122/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T C9170T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_548977
 2020-03-22 2020-09-28
 Singapore hCoV-19/Singapore/969/2020
 ATTAAAGGTTTATAC1- C6310A C6312A G11083T C13730T C19524T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_548980
 2020-03-22 2020-09-28
 Singapore hCoV-19/Singapore/972/2020
 ATTA1- C6312A G11083T C13730T C18167T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_548985
 2020-03-22 2020-09-28
 Singapore hCoV-19/Singapore/977/2020
 C241T C3037T C14408T A20268G A23403G C26895Y AAAAAAAAAAAA29892-

EPI_ISL_548988
 2020-03-22 2020-09-28
 Singapore hCoV-19/Singapore/980/2020
 ATTA1- C3990Y A5390G G6694A T10204C G12322R C14119T A27195G AAAAAAAAAAAA29892-

EPI_ISL_548990
 2020-03-22 2020-09-28
 Singapore hCoV-19/Singapore/982/2020
 ATT1- C241T C3037T C14408T A23403G GGG28881AAC C28896Y AAAAAAAAAAAA29892-

EPI_ISL_548991
 2020-03-22 2020-09-28
 Singapore hCoV-19/Singapore/983/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T T6394C C10319T C14408T A16560R A23403G G25563T C27964T AAAAAAAAAAAA29892-

EPI_ISL_548992
 2020-03-22 2020-09-28
 Singapore hCoV-19/Singapore/984/2020
 ATTA1- C241T C3037T T8604Y C12823T C14408T A23403G GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_548995
 2020-03-22 2020-09-28
 Singapore hCoV-19/Singapore/987/2020
 ATT1- T49W C241T C3037T C8595Y C14408T G20679T A23403G AAAAAAAAAAAA29892-

EPI_ISL_548999
 2020-03-22 2020-09-28
 Singapore hCoV-19/Singapore/991/2020
 ATTAAAGGTTTATACC1- A158R C241T C1707T C3037T C14408T A23403G G25429T C25916T AAAAAAAAAAAA29892-

EPI_ISL_549002
 2020-03-22 2020-09-28
 Singapore hCoV-19/Singapore/994/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_549003
 2020-03-22 2020-09-28
 Singapore hCoV-19/Singapore/995/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C12513T C14408T C19170T G19509A A23403G GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_560413
 2020-03-22 2020-09-29
 Canada hCoV-19/Canada/QC-LSPQ-L00232672/2020
 ATTAAAGGTTTATAC1- C241T C3037T T12190C C14408T C18877T A23403G G25563T TT27464- AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_560625
 2020-03-22 2020-09-29
 France hCoV-19/France/GE8783/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T G15894T G16741T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560697
 2020-03-22 2020-09-29
 United Kingdom hCoV-19/England/GSTT-5646/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1150T C3037T C14408T A22481T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560700
 2020-03-22 2020-09-29
 United Kingdom hCoV-19/England/GSTT-5658/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C25350T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560701
 2020-03-22 2020-09-29
 United Kingdom hCoV-19/England/GSTT-5659/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560705
 2020-03-22 2020-09-29
 United Kingdom hCoV-19/England/GSTT-5705/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C25350T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561335
 2020-03-22 2020-09-30
 United States hCoV-19/USA/DE-DHSS-F917656/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C2416T C3037T C14408T A23403G G25563T TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_563979
 2020-03-22 2020-09-30
 Australia hCoV-19/Australia/VIC2072/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C3096T G11083T G13627T C14805T C15540T G26144T A27675M A28338G G29212T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_569337
 2020-03-22 2020-10-02
 France hCoV-19/France/IHU-0151/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1059T C3037T G11083T C14408T C16394T C22458T A23403G G25563T C28651T C29363T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

MT380732
 2020-03-22 2020-04-24
 United States SARS-CoV-2/human/USA/DC-CDC-9092/2020
 C241T C1059T C3037T C14408T A23403G G25563T G27147T AAAAAAAAAAAAAAAAAAAAA29883-

MT459845
 2020-03-22 2020-05-11
 Greece SARS-CoV-2/human/GRC/48_35910/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C8782T C9430T T9477A C14805T A22151G G25979T T28144C C28657T C28863T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

MT509461
 2020-03-22 2020-05-22
 United States SARS-CoV-2/human/USA/DC-HP00043/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1917T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT509467
 2020-03-22 2020-05-22
 United States SARS-CoV-2/human/USA/DC-HP00022/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T A4912C G11083T C14805T C17010A C21575T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706158
 2020-03-22 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-37/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11417T C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706160
 2020-03-22 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-39/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17747T A17858G C18060T G20326A T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706166
 2020-03-22 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-45/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11417T T14073C C14408T A23403G A23947G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706167
 2020-03-22 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-46/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11417T T14073C C14408T A23403G A23947G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706186
 2020-03-22 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-65/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11417T T14073C C14408T A23403G A23947G A27338G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706197
 2020-03-22 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-76/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17747T A17858G C18060T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706309
 2020-03-22 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-181/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706310
 2020-03-22 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-182/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706311
 2020-03-22 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-183/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C28310A G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706312
 2020-03-22 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-184/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C6040T C8782T G12478A T18736C C24034T T26729C G28077C T28144C C28896G G29315T A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706313
 2020-03-22 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-185/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT810920
 2020-03-22 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0182-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C379A C1059T C3037T C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810933
 2020-03-22 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0201-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810957
 2020-03-22 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0250-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T A2018G C3037T C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810971
 2020-03-22 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0312-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A21137G A23403G A26530G CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MW030228
 2020-03-22 2020-09-22
 Peru SARS-CoV-2/human/PER/covper092/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGT1- C4540T C8782T T9477A C14805T G25979T T28144C C28657T C28863T C29675- ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

NMDC60013209
 2020-03-22 2020-06-01
 China hCoV-19/Guangzhou/ID017/2020
 C241T C3037T C14408T A23403G A24913G C28093T GGG28881AAC G29868M

NMDC60013213
 2020-03-22 2020-06-01
 China hCoV-19/Guangzhou/ID055/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C14408T A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

NMDC60013222
 2020-03-22 2020-06-01
 China hCoV-19/Guangzhou/ID072/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1314A C2416T C3037T C5654T C14408T G16846T A19314R A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

NMDC60013224
 2020-03-22 2020-06-01
 China hCoV-19/Guangzhou/ID021/2020
 T2C C241T C2416T C3037T C5654T C14408T G16846T A23403G G25563T G29868C

NMDC60013229
 2020-03-22 2020-06-01
 China hCoV-19/Guangzhou/ID016/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C1059T C2416T C3037T T12436A C14408T G14773C A23403G G25563T G29868A

EPI_ISL_417420
 2020-03-23 2020-03-25
 China hCoV-19/Chian/NanChang/JX216/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C11916T C14408T C18998T G19525A G29540A AAAAAAAAAAAA29892-

EPI_ISL_418186
 2020-03-23 2020-03-28
 United States hCoV-19/USA/WI-GMF-00227/2020
 T7084C C8782T C15738T C17747T A17858G C18060T T28144C

EPI_ISL_418187
 2020-03-23 2020-03-28
 United States hCoV-19/USA/WI-GMF-00228/2020
 T7084C C8782T C15546Y C15738T C17747T A17858G C18060T T28144C

EPI_ISL_418188
 2020-03-23 2020-03-28
 United States hCoV-19/USA/WI-GMF-00232/2020
 C241T C1059T C3037T C14408T A23403G G25563T G25785T C28369T

EPI_ISL_418317
 2020-03-23 2020-03-23
 United Kingdom hCoV-19/England/SHEF-BFFA9/2020
 C241T C3037T A5855G C14408T A23403G GGG28881AAC

EPI_ISL_419254 MT527184
 2020-03-23 2020-04-01
 Italy SARS-CoV-2/human/ITA/INMI6/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_419255 MT528235
 2020-03-23 2020-04-01
 Italy SARS-CoV-2/human/ITA/INMI7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- A187G C241T C3037T C14408T T21293Y C21575T A23403G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_419664
 2020-03-23 2020-04-03
 Austria hCoV-19/Austria/CeMM0011/2020
 C241T C3037T C5884Y C14408T A20268G A23403G GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_419834 MT451042
 2020-03-23 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC138/2020
 ATTA1- C8782T C26088T T28144C

EPI_ISL_419982
 2020-03-23 2020-04-03
 Australia hCoV-19/Australia/VIC291/2020
 ATTA1- C241T G558K G660K C1059T G3004K C3037T G3564T C5869T G5880K G7038K G8790K G9141K G11535K G12164K C12415T G13571K G14277K C14408T G15769K C16222T G17096K A23403G G24933K G25563T G28086K

EPI_ISL_419983 MT451184
 2020-03-23 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC292/2020
 ATTA1- C241T C1059T C2523T C3037T C14408T A23403G G25563T

EPI_ISL_419984 MT451185
 2020-03-23 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC293/2020
 ATTAA1- C8782T G10368A A15205G C17569T C26088T T28144C A28885G

EPI_ISL_419985 MT451186
 2020-03-23 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC294/2020
 ATTAA1- C1076T G1397A G11083T C27964T T28688C G29742T

EPI_ISL_419986 MT451187
 2020-03-23 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC295/2020
 AT1- C4540T C8782T T9477A G12274T C14805T G25979T T28144C C28311T C28657T C28863T

EPI_ISL_419987 MT451188
 2020-03-23 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC296/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T G18589T A23403G C25528T GGG28881AAC

EPI_ISL_419988 MT451189
 2020-03-23 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC297/2020
 ATTA1- C241T C1912T C3037T C3373A G3564K C11195T C14408T A23403G G24933K C28866T GGG28881AAC

EPI_ISL_419989 MT451190
 2020-03-23 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC298/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C2523T C3037T C14408T A23403G G25563T

EPI_ISL_419990 MT451191
 2020-03-23 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC299/2020
 AT1- C186A C2558T G11083T C14805T G26144T

EPI_ISL_419991 MT451192
 2020-03-23 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC300/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C3784T C14408T A20268G A23403G C28651T

EPI_ISL_419992 MT451193
 2020-03-23 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC301/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C2558T G11083T C14805T G26144T

EPI_ISL_419993 MT451194
 2020-03-23 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC302/2020
 ATTA1- C241T C3037T C14408T C15324T G22918T A23403G G28690T

EPI_ISL_419994 MT451195
 2020-03-23 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC303/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T G18318T A23403G G25429T C25916T

EPI_ISL_419995 MT451196
 2020-03-23 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC304/2020
 ATTA1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T

EPI_ISL_419996 MT451197
 2020-03-23 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC305/2020
 ATTAAAGGTTTA1- C140Y C3096T G11083T G13627T C14805T C15540T G26144T A28338G G29212T

EPI_ISL_419997 MT451198
 2020-03-23 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC306/2020
 C241T C1059T C2523T C3037T G3564K C14408T A23403G G24933K G25563T G28517K

EPI_ISL_419998 MT451199
 2020-03-23 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC307/2020
 ATT1- C241T C2416T C3037T G3564K G12274A C14408T C14786T G20578T A23403G G25563T C26681T

EPI_ISL_419999 MT451200
 2020-03-23 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC308/2020
 AT1- C241T C1059T C2523T C3037T C14408T G16206T A23403G G25563T G26398A

EPI_ISL_420000 MT451201
 2020-03-23 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC309/2020
 ATTAAAGGTTTA1- C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_420001 MT451202
 2020-03-23 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC310/2020
 ATTAAAGG1- C241T C3037T C14408T A23403G GGG28881AAC A29865R

EPI_ISL_420002 MT451203
 2020-03-23 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC311/2020
 ATTAAAG1- G8C C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_420003 MT451204
 2020-03-23 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC312/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T C14408T C15324T G22918T A23403G C23557T G28690T

EPI_ISL_420061
 2020-03-23 2020-04-04
 France hCoV-19/France/IDF3212/2020
 C241T C3037T C11414T C14408T A23403G G28001T TGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29809-

EPI_ISL_420064
 2020-03-23 2020-04-04
 France hCoV-19/France/IDF3235/2020
 C241T C560T C3037T C14408T C15324T A23403G C28253T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_420235
 2020-03-23 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C053A/2020
 C1457T A2480G C2558T G11083T C14805T G26144T C26340T

EPI_ISL_420236
 2020-03-23 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C0664/2020
 C241T A2869G C3037T C14408T A23403G GGG28881AAC C29095T

EPI_ISL_420237
 2020-03-23 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C0628/2020
 A1515G C9223T G11083T C14805T T17247C G26144T

EPI_ISL_420239
 2020-03-23 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C0770/2020
 ATG1605- A1904G C8090T C10789T A12796C

EPI_ISL_420240
 2020-03-23 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C0084/2020
 C241T C3037T T7438C G10097A C14408T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_420264
 2020-03-23 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C06FB/2020
 C241T C3037T T7438C G10097A C14408T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_420265
 2020-03-23 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C078F/2020
 C241T C1469T C3037T C14408T A23403G G24095T GGG28881AAC

EPI_ISL_420267
 2020-03-23 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C00DF/2020
 C241T C3037T T7438C G10097A C14408T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_420268
 2020-03-23 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C0093/2020
 T7438C G26840T GGG28881AAC

EPI_ISL_420269
 2020-03-23 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C04F1/2020
 C1457T A2480G C2558T G11083T C14805T G26144T C26340T

EPI_ISL_420371
 2020-03-23 2020-04-06
 Belgium hCoV-19/Belgium/VRJM-0323114/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420372
 2020-03-23 2020-04-06
 Belgium hCoV-19/Belgium/LPDC-0323115/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T C18904T C21742T A23403G G25606T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420373
 2020-03-23 2020-04-06
 Belgium hCoV-19/Belgium/EBN-0323116/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15026T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420386
 2020-03-23 2020-04-06
 Belgium hCoV-19/Belgium/MC-0323129/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1912T C3037T C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420396
 2020-03-23 2020-04-06
 Belgium hCoV-19/Belgium/GM-0323139/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G A28765G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420397
 2020-03-23 2020-04-06
 Belgium hCoV-19/Belgium/DB-0323140/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G G29477T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420398
 2020-03-23 2020-04-06
 Belgium hCoV-19/Belgium/NA-0323141/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8394T C14408T C15277T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420411
 2020-03-23 2020-04-06
 Belgium hCoV-19/Belgium/BEG-0323154/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T4011C G4261A C14408T C21110T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420416
 2020-03-23 2020-04-06
 Belgium hCoV-19/Belgium/FMC-0323159/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T4011C G4261A C14408T C21110T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420432
 2020-03-23 2020-04-06
 Belgium hCoV-19/Belgium/CJM-0323175/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11355T C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420508
 2020-03-23 2020-04-06
 United Kingdom hCoV-19/England/20132072802/2020
 C241T C3037T C14408T C18877T A23403G C24155Y G25563T C29625T

EPI_ISL_420568
 2020-03-23 2020-04-06
 Italy hCoV-19/Italy/6193/2020
 A39G T42C C44A C48M C241T C1023Y C3037T C14408T A23403G GGG28881AAC

EPI_ISL_420569
 2020-03-23 2020-04-06
 Italy hCoV-19/Italy/TE6195/2020
 TTT28881CAG C15T A35R A39W C48M C241T AC538WM C3037T C14408T A17346M A23403G GGG28881AAC

EPI_ISL_420583
 2020-03-23 2020-04-06
 Italy hCoV-19/Italy/TE6222/2020
 TTC42KYM C48A A55R C241T A538W C3037T T7396W TG8827WK C14408T A23403G T24084W A25449W GGG28881AAC A29903-

EPI_ISL_420604
 2020-03-23 2020-04-06
 France hCoV-19/France/ARA12371/2020
 C241T GTCATGTTA510- C3037T G6052A C14408T A22234G A23403G G25563T C29732T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_420607
 2020-03-23 2020-04-06
 France hCoV-19/France/ARA12485/2020
 C241T C3037T T10561C C14408T C15324T C16887T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_420608
 2020-03-23 2020-04-06
 France hCoV-19/France/ARA12499/2020
 C241T C3037T C14408T A23403G G25563T G28086T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_420609
 2020-03-23 2020-04-06
 France hCoV-19/France/ARA12524/2020
 C241T G248T C3037T C14408T C15324T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_420610
 2020-03-23 2020-04-06
 France hCoV-19/France/ARA12558/2020
 C241T A2522G C3037T A10874G C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_420611
 2020-03-23 2020-04-06
 France hCoV-19/France/ARA12576/2020
 G167T C241T C3037T C14408T C15324T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_420613
 2020-03-23 2020-04-06
 France hCoV-19/France/ARA12630/2020
 C241T C1059T C3037T C14408T A23403G G23611A G25563T G28109T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_420614
 2020-03-23 2020-04-06
 France hCoV-19/France/ARA12632/2020
 C241T C1059T C3037T C14408T A23403G G25563T G28423A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_420615
 2020-03-23 2020-04-06
 France hCoV-19/France/ARA12759/2020
 C241T C3037T C14408T A23403G G25340A G25563T C26013T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_420616
 2020-03-23 2020-04-06
 France hCoV-19/France/ARA1284/2020
 C241T C3037T C7093T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_420617
 2020-03-23 2020-04-06
 France hCoV-19/France/ARA12877/2020
 C241T C337T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_420618
 2020-03-23 2020-04-06
 France hCoV-19/France/ARA12915/2020
 C241T C3037T C6310T C14408T C15324T C16762T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_420619
 2020-03-23 2020-04-06
 France hCoV-19/France/ARA12973/2020
 C241T C3037T G6532T C14408T C15324T A15860G A23403G G28985T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_420620
 2020-03-23 2020-04-06
 France hCoV-19/France/ARA12996/2020
 C241T C3037T C14408T C15324T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_420630 MT322417
 2020-03-23 2020-04-08
 United States SARS-CoV-2/human/USA/VA-DCLS-0038/2020
 AT1- C241T C1059T C3037T C14408T C14925T A23403G G25563T

EPI_ISL_420640
 2020-03-23 2020-04-06
 United Kingdom hCoV-19/England/20136088602/2020
 T931C ATG1605- T12418C G20024A G26416C G29425A

EPI_ISL_420985
 2020-03-23 2020-04-07
 United Kingdom hCoV-19/Wales/PHWC-252B4/2020
 C241T C3037T C14408T A23403G T26512C

EPI_ISL_420988
 2020-03-23 2020-04-07
 United Kingdom hCoV-19/Wales/PHWC-253DF/2020
 A1- G1440A G2891A C25669T G28851T A29865R

EPI_ISL_420990
 2020-03-23 2020-04-07
 United Kingdom hCoV-19/Wales/PHWC-25418/2020
 A1- A2480G C2558T G11083T C14805T G26144T C28876T G29742A

EPI_ISL_420994
 2020-03-23 2020-04-07
 United Kingdom hCoV-19/Wales/PHWC-25463/2020
 G1440A G2891A G28851T

EPI_ISL_420995
 2020-03-23 2020-04-07
 United Kingdom hCoV-19/Wales/PHWC-25472/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G1440A G2891A C4993Y C21575T C25669T C28786T G28851T

EPI_ISL_421002
 2020-03-23 2020-04-07
 United Kingdom hCoV-19/Wales/PHWC-25524/2020
 ATTA1- G1440A G2891A C5467T C27046Y G28851T

EPI_ISL_421003
 2020-03-23 2020-04-07
 United Kingdom hCoV-19/Wales/PHWC-25542/2020
 C241T C3037T C4002T G10097A C11620T C13536T C14408T G21538T A23403G C23731T GGG28881AAC C29774T

EPI_ISL_421004
 2020-03-23 2020-04-07
 United Kingdom hCoV-19/Wales/PHWC-25551/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T T5573C G11801A C14408T T19839C A23403G G24586T G25552T GGG28881AAC A29865G

EPI_ISL_421006
 2020-03-23 2020-04-07
 United Kingdom hCoV-19/Wales/PHWC-2557F/2020
 A1- G1440A G2891A G4720T C16329T A27669G

EPI_ISL_421008
 2020-03-23 2020-04-07
 United Kingdom hCoV-19/Wales/PHWC-255AC/2020
 C241T C3037T C6990T C14408T A23403G C29200T

EPI_ISL_421010
 2020-03-23 2020-04-07
 United Kingdom hCoV-19/Wales/PHWC-255E8/2020
 ATTA1- G1440A G2891A C25669T G28851T

EPI_ISL_421196
 2020-03-23 2020-04-07
 Belgium hCoV-19/Belgium/ULG-10018/2020
 C241T C313T C3037T C14408T C19343T G20275T A23403G GGG28881AAC

EPI_ISL_421283
 2020-03-23 2020-04-07
 United States hCoV-19/USA/WI-UW-25/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G11083T C14805T C25046T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421291
 2020-03-23 2020-04-07
 United States hCoV-19/USA/WI-UW-33/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C8782T T18736C C24034T T26729C C27635T G28077C T28144C A29567C A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421313
 2020-03-23 2020-04-07
 United States hCoV-19/USA/WI-UW-55/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8818T A10995G G29711T T29804C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421316
 2020-03-23 2020-04-07
 United States hCoV-19/USA/WI-UW-58/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10188T C14408T A23403G T24982C G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421319
 2020-03-23 2020-04-07
 United States hCoV-19/USA/WI-UW-61/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T G16381A T17877C C20316T G25500T G26211T T28144C G28878A G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421338
 2020-03-23 2020-04-07
 United States hCoV-19/USA/WI-UW-79/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3429T C14408T A20268G A21137G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421495
 2020-03-23 2020-04-08
 Portugal hCoV-19/Portugal/PT0092/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- C241T C3037T C11663T C14408T A20268G A23403G G29734C CGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29754-

EPI_ISL_421507
 2020-03-23 2020-04-08
 France hCoV-19/France/IDF3274/2020
 ATTAAAG1- C36T C241T C1059T C3037T C3177T C11471T C14408T A23403G G23856T G25563T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_421508
 2020-03-23 2020-04-08
 France hCoV-19/France/IDF3276/2020
 C36T C241T C3037T C14408T C15324T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_421509
 2020-03-23 2020-04-08
 France hCoV-19/France/HF3290/2020
 ATTAAAGGTTTAT1- C241T C1059T C3037T C14408T C23029T A23403G G25563T A26459G T26483C C29724T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_421511
 2020-03-23 2020-04-08
 France hCoV-19/France/HF3295/2020
 ATTAAAGGTTTATACCTTCCC1- C241T C1059T C3037T G9141A C14408T A20766G A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_421512
 2020-03-23 2020-04-08
 France hCoV-19/France/IDF3324/2020
 ATTAAAGGTTT1- C241T C3037T C14408T C15324T A23403G AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_421513
 2020-03-23 2020-04-08
 France hCoV-19/France/IDF3345/2020
 ATTAAAGGTTTAT1- C241T C3037T T10339C C14408T A23403G G25563T C26461T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_421826
 2020-03-23 2020-04-09
 United Kingdom hCoV-19/England/201380276/2020
 G1440A C1887Y G2891R G6463T A17787W G25784T C27577T A27669G

EPI_ISL_421842
 2020-03-23 2020-04-09
 United Kingdom hCoV-19/England/20138086904/2020
 A2480G C2558T G11083T C14805T T25519A T25957C G26144T C29200Y

EPI_ISL_422714 LR877790
 2020-03-23 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_179/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A24862G G26660T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422715 LR877788
 2020-03-23 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_180/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- C2609T C17410T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422718 LR877796
 2020-03-23 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_183/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C26408T C27804T A27897G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422720 LR877798
 2020-03-23 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_185/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422721 LR877805
 2020-03-23 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_186/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422722 LR877809
 2020-03-23 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_187/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422724 LR877813
 2020-03-23 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_189/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6120T C14408T G20275A A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422725 LR877820
 2020-03-23 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_190/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A3859G G11083T C14805T T17247C C20233T G26144T A29598G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422726 LR877815
 2020-03-23 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_191/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T G15535T T17247C C23413T G26144T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422729 LR877814
 2020-03-23 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_194/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C19854T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422923 LR877794
 2020-03-23 2020-04-11
 Netherlands hCoV-19/Netherlands/ZuidHolland_55/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T10561C C14408T C15324T A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422924 LR877792
 2020-03-23 2020-04-11
 Netherlands hCoV-19/Netherlands/ZuidHolland_56/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C11109T C14408T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422925 LR877802
 2020-03-23 2020-04-11
 Netherlands hCoV-19/Netherlands/ZuidHolland_57/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A18801C A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422926 LR877795
 2020-03-23 2020-04-11
 Netherlands hCoV-19/Netherlands/ZuidHolland_58/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C24054T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422929 LR877806
 2020-03-23 2020-04-11
 Netherlands hCoV-19/Netherlands/ZuidHolland_61/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422930 LR877804
 2020-03-23 2020-04-11
 Netherlands hCoV-19/Netherlands/ZuidHolland_62/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C3037T C14408T C15720T A23403G C25904T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422932 LR877803
 2020-03-23 2020-04-11
 Netherlands hCoV-19/Netherlands/ZuidHolland_64/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1077T C3037T C14408T C18029T A23403G G25563T C25688T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422934 LR877812
 2020-03-23 2020-04-11
 Netherlands hCoV-19/Netherlands/ZuidHolland_66/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A24862G G26754T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422935 LR877816
 2020-03-23 2020-04-11
 Netherlands hCoV-19/Netherlands/ZuidHolland_67/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_423075
 2020-03-23 2020-04-12
 United Kingdom hCoV-19/England/20134007204/2020
 A7479G A8667G G11083T C14805T T17247C T22389Y C25572T G26144T C28887T

EPI_ISL_423096
 2020-03-23 2020-04-12
 United Kingdom hCoV-19/England/20134017904/2020
 C241T G2164A C3037T C14408T A23403G GGG28881AAC

EPI_ISL_423097
 2020-03-23 2020-04-12
 United Kingdom hCoV-19/England/20134018004/2020
 C241T G2164A C3037T G13571K C14408T A23403G GGG28881AAC

EPI_ISL_423099
 2020-03-23 2020-04-12
 United Kingdom hCoV-19/England/20134018602/2020
 C241T A1422R C3037T C14408T A23403G A26530R C26789T

EPI_ISL_423104
 2020-03-23 2020-04-12
 United Kingdom hCoV-19/England/20134019402/2020
 C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC G28908T

EPI_ISL_423105
 2020-03-23 2020-04-12
 United Kingdom hCoV-19/England/20134019502/2020
 C241T C2416T C3037T C14408T C14786T G20578T A23403G G25563T

EPI_ISL_423109
 2020-03-23 2020-04-12
 United Kingdom hCoV-19/England/20134020104/2020
 A2480G C2558T -11075TTT G11083T C14805T G26144T

EPI_ISL_423129
 2020-03-23 2020-04-12
 United Kingdom hCoV-19/England/20134025204/2020
 C241T A1977R C3037T C14408T A23403G GGG28881AAC

EPI_ISL_423136
 2020-03-23 2020-04-12
 United Kingdom hCoV-19/England/20134027504/2020
 A2480G C2558T G11083T C14805T G18078A G22661T G26144T

EPI_ISL_423147
 2020-03-23 2020-04-12
 United Kingdom hCoV-19/England/20134060504/2020
 C241T C2416T C3037T C14408T C14786T T17097C G20578T A23403G T25485C G25563T

EPI_ISL_423150
 2020-03-23 2020-04-12
 United Kingdom hCoV-19/England/20134064004/2020
 C241T C3037T C14408T G19684T A23403G GGG28881AAC

EPI_ISL_423163
 2020-03-23 2020-04-12
 United Kingdom hCoV-19/England/20134071804/2020
 C241T C1059T C3037T T13006C C14408T A23403G C24919Y G25563T C25688T

EPI_ISL_423648
 2020-03-23 2020-04-12
 United Kingdom hCoV-19/England/20130063804/2020
 A2480G C2558T G11083T C14805T A20216W G26144T

EPI_ISL_423717
 2020-03-23 2020-04-12
 United Kingdom hCoV-19/England/20132004804/2020
 C241T C3037T CC14407TT A23403G A26530R

EPI_ISL_423727
 2020-03-23 2020-04-12
 United Kingdom hCoV-19/England/20132017604/2020
 A2480G C2558T G11083T C14805T C20703T G26144T

EPI_ISL_423733
 2020-03-23 2020-04-12
 United Kingdom hCoV-19/England/20132018704/2020
 C241T C2416T C3037T C14408T C14786T G20578T A23403G T25485C G25563T

EPI_ISL_423761
 2020-03-23 2020-04-12
 United Kingdom hCoV-19/England/20132026904/2020
 C241T C3037T C14408T G21204T A23403G GGG28881AAC

EPI_ISL_423782
 2020-03-23 2020-04-12
 United Kingdom hCoV-19/England/20132047304/2020
 C241T A1307R C3037T C5869T C14408T A23403G G23593K G25429T

EPI_ISL_423787
 2020-03-23 2020-04-12
 United Kingdom hCoV-19/England/20132054704/2020
 G1440A G2891R A27669G

EPI_ISL_423796
 2020-03-23 2020-04-12
 United Kingdom hCoV-19/England/20132068204/2020
 C241T C1059T C1437T C3037T T13006C C14408T A23403G G25563T C25688T

EPI_ISL_423797
 2020-03-23 2020-04-12
 United Kingdom hCoV-19/England/20132068304/2020
 C241T C1059T C1437T C3037T T13006C C14408T A23403G G25563T C25688T

EPI_ISL_423799
 2020-03-23 2020-04-12
 United Kingdom hCoV-19/England/20132069104/2020
 C241T C3037T C14408T A23403G C27679T GGG28881AAC

EPI_ISL_423808
 2020-03-23 2020-04-12
 United Kingdom hCoV-19/England/20132080804/2020
 A2480G C2558T G11083T C14805T C18162T C24964T G26144T

EPI_ISL_423813
 2020-03-23 2020-04-12
 United Kingdom hCoV-19/England/20132082004/2020
 T586C G1043R A1123G G2448T G11083T G13627T C14805T C15540T G26144T A28338G T29729W

EPI_ISL_423817
 2020-03-23 2020-04-12
 United Kingdom hCoV-19/England/20132082504/2020
 A2480G C2558T G11083T C14805T G26144T

EPI_ISL_423819
 2020-03-23 2020-04-12
 United Kingdom hCoV-19/England/20132090504/2020
 G1440A G2891R C4668T A12976T C28657Y C28708T

EPI_ISL_423828
 2020-03-23 2020-04-12
 United Kingdom hCoV-19/England/20132095704/2020
 A2480G C2558T C7011T G11083T G11405A C14805T G26144T C28869T

EPI_ISL_423829
 2020-03-23 2020-04-12
 United Kingdom hCoV-19/England/20132096004/2020
 G1440A G2891R G5665A C20703T

EPI_ISL_423830
 2020-03-23 2020-04-12
 United Kingdom hCoV-19/England/20132096304/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_423834
 2020-03-23 2020-04-12
 United Kingdom hCoV-19/England/20132100404/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_423839
 2020-03-23 2020-04-12
 United Kingdom hCoV-19/England/20132105704/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_423844
 2020-03-23 2020-04-12
 United Kingdom hCoV-19/England/20132107304/2020
 C241T G487A C3037T C14408T G21204T A23403G GGG28881AAC

EPI_ISL_423847
 2020-03-23 2020-04-12
 United Kingdom hCoV-19/England/20132108004/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_423852
 2020-03-23 2020-04-12
 United Kingdom hCoV-19/England/20132108704/2020
 C241T C3037T C14408T C16289T A23403G G25429T

EPI_ISL_424251 MT326087
 2020-03-23 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1801/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- AACC34TTTA C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_424252 MT326088
 2020-03-23 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1840/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C8782T C10818T C14937T C17747T A17858G C18060T T28144C

EPI_ISL_424279 MT326034
 2020-03-23 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1850/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAA1- T1896C C8782T C11674T C17747T A17858G C18060T T28144C C28826T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_424280 MT326035
 2020-03-23 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1868/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACG1- A1079C G1397A C4456T T7225C C9319T G11083T C19862T T27384C T28688C G29742T A29869T A29903-

EPI_ISL_424281 MT326036
 2020-03-23 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1864/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTC1- C241T C3037T C14408T C18877T A23403G G25563T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_424284 MT326039
 2020-03-23 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1863/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACG1- C8782T G13571T C17747T A17858G C18060T A27924G T28144C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_424287 MT326042
 2020-03-23 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1843/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- G8602A C8782T C17747T A17858G C18060T C25418A G26152A T28144C AA29902-

EPI_ISL_424289 MT326044
 2020-03-23 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1860/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTG1- C8782T C17747T A17858G C18060T T28144C AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_424291 MT326046
 2020-03-23 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1854/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCA1- C241T C1059T C3037T C6040T C14408T A23403G G25563T A29869T

EPI_ISL_424293 MT326048
 2020-03-23 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1870/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- AACC34HTTH C241T C1059T C3037T C6040T C14408T A23403G G25563T A29903-

EPI_ISL_424294 MT326049
 2020-03-23 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1872/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C64T C241T C379A C1059T T2244C C3037T C11704T C14408T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_424296 MT326051
 2020-03-23 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1919/2020
 ATTAAAGGTTTATACCTTCCCA1- AACC34TTTH G8602A C8782T C17747T A17858G C18060T G21800T C25418A G26152A T28144C C29838T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_424297 MT326052
 2020-03-23 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1913/2020
 ATTAAAGGTT1- T13B ACC35TTH C8782T C10002T A10844G C17747T A17858G C18060T T28144C A29903-

EPI_ISL_424298 MT326053
 2020-03-23 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1920/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATA1- C2592T C8782T C17274T C17326T C17747T A17858G A17884G C18060T G19645T G19800A T28144C A29903-

EPI_ISL_424299 MT326054
 2020-03-23 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1904/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAA1- C241T C1059T C3037T G3947T C6040T C14184T C14408T A23403G G25563T C25844T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_424307 MT326061
 2020-03-23 2020-04-12
 United States SARS-CoV-2/human/USA/OR-UW-1885/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- AACC34HTTH C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T AAAAAAAA29896-

EPI_ISL_424310 MT326064
 2020-03-23 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1888/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAAC1- C1059T C3037T C14408T A23403G G25563T G29553A AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_424327
 2020-03-23 2020-04-12
 United States hCoV-19/USA/WA-UW-1947/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAAC19- C37H C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T -28087CTGGTTCTAAATCACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATTCTAAATGGTATATTAGAGTAGGAGCTAGAAAATCAGCACCTTTAATTGAATTGTGCGTGGATGAGT AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_424330 MT326082
 2020-03-23 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1865/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C241T C1059T C3037T C6255T C14408T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_425058
 2020-03-23 2020-04-14
 Belgium hCoV-19/Belgium/UGent-18/2020
 T514C ATG1605- G14622T C17410T T18723C

EPI_ISL_425570
 2020-03-23 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10E5F3/2020
 C241T C3037T C14408T A23403G

EPI_ISL_425571
 2020-03-23 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10E61E/2020
 C241T C3037T C14408T A23403G G25429T C27972T C28045T

EPI_ISL_425573
 2020-03-23 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10E64B/2020
 C241T C3037T C14408T T15351G G21518T A23403G

EPI_ISL_425775
 2020-03-23 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR462/2020
 A7990C G11083T C14805T T17247C G26144T

EPI_ISL_425786
 2020-03-23 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR562/2020
 ATG1605- C3787T C12025T C16362T

EPI_ISL_425902
 2020-03-23 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB118/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_425907
 2020-03-23 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB125/2020
 C241T C1059T C1076T C3037T C10582T C14408T A23403G G25563T

EPI_ISL_425911
 2020-03-23 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB132/2020
 C241T C1059T C3037T C10851T C14408T A23403G G25563T

EPI_ISL_425915
 2020-03-23 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB146/2020
 G227A C241T C3037T T3100G G10097A C14408T C14649T G15079A AT17199GA G17567A C17939T A23403G G23561A C23731T G24056A G25770A G25947T G26709A GGG28881AAC G29058A

EPI_ISL_425916
 2020-03-23 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB148/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_425922
 2020-03-23 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB157/2020
 A1691G A9744G G11083T C14805T T17247C G26144T

EPI_ISL_426060 MT345828
 2020-03-23 2020-04-14
 United States SARS-CoV-2/human/USA/ID-UW-2160/2020
 ATTAAAGGTTT1- C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T AAAAAAAA29896-

EPI_ISL_426061 MT345858
 2020-03-23 2020-04-14
 United States SARS-CoV-2/human/USA/ID-UW-2174/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C241T T833C C1059T C3037T C14408T C15928T A23403G G25563T C27964T -29904AAAAAAAAAA

EPI_ISL_426063 MT345866
 2020-03-23 2020-04-14
 United States SARS-CoV-2/human/USA/ID-UW-2255/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA AC163CG GT167CA C241T T833C C1059T C3037T C14408T A23403G C23557T G25563T C27964T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_426078
 2020-03-23 2020-04-14
 United States hCoV-19/USA/UN-UW-2139/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C1059T C3037T T3312C C14408T A23403G G25563T AAAAAAA29897-

EPI_ISL_426081 MT345805
 2020-03-23 2020-04-14
 United States SARS-CoV-2/human/USA/WA-UW-2078/2020
 ATTAAAG1- AACC34TTTA C241T C1059T C3037T C14408T G16912T A23403G G25563T G29553A AAAAAAAAAAAA29892-

EPI_ISL_426103 MT345799
 2020-03-23 2020-04-14
 United States SARS-CoV-2/human/USA/WA-UW-2169/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCG1- C241T C1059T C3037T C14408T A23403G G25563T G29553A AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_426119 MT345836
 2020-03-23 2020-04-14
 United States SARS-CoV-2/human/USA/WA-UW-2228/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA T490A C3177T C6040T C8782T G12478A T18736C C24034T T26729C G28077C T28144C C28896G A29700G A29903-

EPI_ISL_426133 MT345867
 2020-03-23 2020-04-14
 United States SARS-CoV-2/human/USA/WA-UW-2258/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA T7513C C8782T C17747T A17858G C18060T T28144C A29903-

EPI_ISL_426304
 2020-03-23 2020-04-15
 United States hCoV-19/USA/NY-Wadsworth-27162-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426454 MT350236
 2020-03-23 2020-04-17
 United States SARS-CoV-2/human/USA/VA-DCLS-0041/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2416T C3037T G4523A C10712T C14408T C16111T A23403G G25563T C29870A

EPI_ISL_426526
 2020-03-23 2020-04-17
 United States hCoV-19/USA/AZ-TG269824/2020
 C241T C1059T C3037T C14408T C21767T A23403G G24928T G25563T C27964T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426688 MT451268
 2020-03-23 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC381/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T

EPI_ISL_426689 MT451269
 2020-03-23 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC382/2020
 ATTA1- C241T C1059T C3037T G3564T G4678A C14408T A23403G C24844T G24933K G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_426690 MT451270
 2020-03-23 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC383/2020
 AT1- C241T C1059T C3037T C11919T C14408T C21711T A23403G G25563T TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_426691 MT451271
 2020-03-23 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC384/2020
 ATTAAAGGTT1- C241T C3037T C14408T G17944T A23403G A23922G T25051C AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_426692 MT451272
 2020-03-23 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC385/2020
 AT1- C3365T G3564T G11083T C14805T C23707T G24933T G26144T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_426694 MT451274
 2020-03-23 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC387/2020
 ATTA1- C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_426696 MT451276
 2020-03-23 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC389/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G3564T G11083T C14805T T17247C G24933T G26144T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_426765 MT451350
 2020-03-23 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC492/2020
 G3564T G11083T C14805T G24933T G26144T C26606T G28842T

EPI_ISL_426767 MT641676
 2020-03-23 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC494/2020
 G3564T C6312A G11083T C13730T C23929T G24933T C28311T

EPI_ISL_426770 MT641677
 2020-03-23 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC497/2020
 C241T C1059T C3037T G3564T G9968A G11535K C14408T A20755C A23403G G25563T C28093T

EPI_ISL_426771 MT451354
 2020-03-23 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC498/2020
 C241T C1059T C3037T G3564T C10851T C14408T A23403G G25563T

EPI_ISL_426775 MT451356
 2020-03-23 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC504/2020
 C241T C3037T C6723T C14408T A23403G T26094C

EPI_ISL_426786 MT641686
 2020-03-23 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC516/2020
 C241T C3037T G3564T G8790K G11535T C14408T A23403G G24933T C27046T GGG28881AAC

EPI_ISL_426789 MT451358
 2020-03-23 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC520/2020
 C241T C3037T G3564T T7438C C14408T A23403G G24933T C29353T

EPI_ISL_426796 MT451364
 2020-03-23 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC530/2020
 C241T C3037T C4809T C14408T A23403G A26530G

EPI_ISL_426798 MT451366
 2020-03-23 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC532/2020
 G374A C6936T C8782T C17747T A17858G C18060T T28144C

EPI_ISL_426804 MT451370
 2020-03-23 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC538/2020
 C241T C1059T C2523T C3037T C14408T A23403G G25563T

EPI_ISL_427271
 2020-03-23 2020-04-17
 United States hCoV-19/USA/AZ-TG271866/2020
 C241T C313T C3037T C14408T A23403G GGG28881AAC -29594AT AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_427272
 2020-03-23 2020-04-17
 United States hCoV-19/USA/AZ-TG271868/2020
 C241T C313T C3037T C14408T A23403G GGG28881AAC -29594AT AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_427286
 2020-03-23 2020-04-17
 United States hCoV-19/USA/MN-MDH-147/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C9661T C14408T A21845R A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_427287
 2020-03-23 2020-04-17
 United States hCoV-19/USA/MN-MDH-149/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T A2969G C3037T C14408T T22325W A23403G G25563T G26389T T26545C C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_427296
 2020-03-23 2020-04-18
 Brazil hCoV-19/Brazil/DF-861/2020
 ATTAAAGG1- C241T C3037T C7504T C14408T A23403G T27299C GGG28881AAC T29148C CTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29784-

EPI_ISL_427297
 2020-03-23 2020-04-18
 Brazil hCoV-19/Brazil/DF-862/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G T27299C GGG28881AAC T29148C GAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29781-

EPI_ISL_427395
 2020-03-23 2020-04-18
 Taiwan hCoV-19/Taiwan/TSGH-08/2020
 C241T C1059T C3037T C6926T C11916T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_427396
 2020-03-23 2020-04-18
 Taiwan hCoV-19/Taiwan/TSGH-09/2020
 T2C G7A T9A G1440A G2534A G2891A C4668T

EPI_ISL_427416
 2020-03-23 2020-04-18
 Qatar hCoV-19/Qatar/QA20/2020
 C9303Y C11074Y G11083K C14805Y G16537R C24245Y G25555S G26144K

EPI_ISL_427417
 2020-03-23 2020-04-18
 Qatar hCoV-19/Qatar/QA21/2020
 T356Y G11083K C13667Y C14805Y G16537R C19484Y C21304Y G26144K

EPI_ISL_428282
 2020-03-23 2020-04-20
 United States hCoV-19/USA/WI-UW-186/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428283
 2020-03-23 2020-04-20
 United States hCoV-19/USA/WI-UW-187/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428285
 2020-03-23 2020-04-20
 United States hCoV-19/USA/WI-UW-189/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C8782T T18736C C24034T T26729C C27635T G28077C T28144C A29567C A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428286
 2020-03-23 2020-04-20
 United States hCoV-19/USA/WI-UW-190/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C21110T A23403G G25563T C27964T C28846T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428287
 2020-03-23 2020-04-20
 United States hCoV-19/USA/WI-UW-191/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T2116A A10070C G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428288
 2020-03-23 2020-04-20
 United States hCoV-19/USA/WI-UW-192/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428289
 2020-03-23 2020-04-20
 United States hCoV-19/USA/WI-UW-193/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428303
 2020-03-23 2020-04-20
 United States hCoV-19/USA/WI-UW-207/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T2116A G11083T G23518A G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428349
 2020-03-23 2020-04-20
 France hCoV-19/France/IDF3386/2020
 C241T C2416T C3037T C12141A C14408T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_428352
 2020-03-23 2020-04-20
 France hCoV-19/France/IDF3518/2020
 C241T C3037T C14408T C15324T A23403G CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_428359
 2020-03-23 2020-04-20
 France hCoV-19/France/HF3677/2020
 C241T C3037T A6081G C14408T C15324T A23403G GAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29864-

EPI_ISL_428367
 2020-03-23 2020-04-20
 France hCoV-19/France/N4427/2020
 C241T C2536T C3037T C9448T C14408T T15696G A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_428892
 2020-03-23 2020-04-22
 Russia hCoV-19/Russia/Krasnodar-80902/2020
 C241T C1059T C3037T C10449T C14408T A20055G A23403G G25563T

EPI_ISL_428893
 2020-03-23 2020-04-22
 Russia hCoV-19/Russia/Kabardino-Balkaria-80501/2020
 C8782T G22468T T28144C G28878A G29742A

EPI_ISL_428898
 2020-03-23 2020-04-22
 Russia hCoV-19/Russia/Kabardino-Balkaria-80503/2020
 C8782T G22468T T28144C G28878A G29742A

EPI_ISL_428900
 2020-03-23 2020-04-22
 Russia hCoV-19/Russia/Moscow-80112/2020
 A187G C241T C3037T C14408T A23403G G29557T

EPI_ISL_428901
 2020-03-23 2020-04-22
 Russia hCoV-19/Russia/Crymea-80603/2020
 C241T C3037T G4201T C14408T A23403G C26527T

EPI_ISL_428902
 2020-03-23 2020-04-22
 Russia hCoV-19/Russia/Orenburg-80305/2020
 C241T C1059T C3037T C10449T C14408T A20055G A23403G G25563T

EPI_ISL_428905
 2020-03-23 2020-04-22
 Russia hCoV-19/Russia/Moscow-80402/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_428994 MT385418
 2020-03-23 2020-04-23
 United States SARS-CoV-2/human/USA/CA-CZB0703/2020
 C241T C313T C3037T C14408T A23403G G28086T GGG28881AAC

EPI_ISL_429016 MT385440
 2020-03-23 2020-04-23
 United States SARS-CoV-2/human/USA/CA-CZB0709/2020
 ATTAAAGG1- C241T C1059T C3037T G8102T C14408T G14712A C14877T A23403G G25563T G28851T A29884C AAAAA29899-

EPI_ISL_429022 MT385446
 2020-03-23 2020-04-23
 United States SARS-CoV-2/human/USA/CA-CZB0713/2020
 C241T G1145A C3037T C14408T A23403G GGG28881AAC

EPI_ISL_429024 MT385448
 2020-03-23 2020-04-23
 United States SARS-CoV-2/human/USA/CA-CZB0705/2020
 AT1- C241T C1059T C3037T C14408T A23403G G25563T C29614T AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_429034 MT385458
 2020-03-23 2020-04-23
 United States SARS-CoV-2/human/USA/CA-CZB0706/2020
 ATTAAAGGTTTA1- T13Y T21895Y AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_429038 MT385462
 2020-03-23 2020-04-23
 United States SARS-CoV-2/human/USA/CA-CZB0707/2020
 ATTAAAGGTTTATAC1- C241T C3037T C11674T C14408T A23403G C27046T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_429040 MT385464
 2020-03-23 2020-04-23
 United States SARS-CoV-2/human/USA/CA-CZB0701/2020
 ATTAAAGGT1- C6723T C8782T C14925T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_429042 MT385466
 2020-03-23 2020-04-23
 United States SARS-CoV-2/human/USA/CA-CZB0710/2020
 ATTAAAGGTTT1- C241T T833C C1059T C3037T C11008T C14408T A23403G C23557T G25563T C27964T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_429130
 2020-03-23 2020-04-23
 Sweden hCoV-19/Sweden/20-08683/2020
 C241T C1059T C1302T C3037T C14408T A23403G C25282T G25563T

EPI_ISL_429214
 2020-03-23 2020-04-23
 Switzerland hCoV-19/Switzerland/GE2759/2020
 ATTAAAGGTTT1- C241T C3037T C14408T C15324T A23403G G28881T GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_429215
 2020-03-23 2020-04-23
 Switzerland hCoV-19/Switzerland/GE4807/2020
 ATTAAAGG1- C241T A518G C3037T C8293T C14408T T18488C A23403G T24739C A26530G A29903-

EPI_ISL_429460
 2020-03-23 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI346/2020
 C241T C1059T C3037T C12885T C14408T A23403G G25563T

EPI_ISL_429461
 2020-03-23 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI347/2020
 C241T C1059T C3037T C4202T T8788C G13624T C14408T A23403G G25563T G26951A

EPI_ISL_429463
 2020-03-23 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI349/2020
 C241T C1059T C1302T C3037T C11074T C14408T T18731C A23403G G25563T

EPI_ISL_429464
 2020-03-23 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI351/2020
 C241T C1059T C3037T C3966T C14408T A23403G G25563T T29655C

EPI_ISL_429465
 2020-03-23 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI352/2020
 C241T C1059T C3037T T8788C C14408T A23403G G25563T G26951A

EPI_ISL_429466
 2020-03-23 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI354/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429468
 2020-03-23 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI357/2020
 C241T C1059T C3037T T8788C C14408T A23403G G25563T G26951A

EPI_ISL_429471
 2020-03-23 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI361/2020
 C241T C1059T C3037T C14408T G15380T A23403G G25563T

EPI_ISL_429472
 2020-03-23 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI364/2020
 C241T C1059T C1302T C3037T C14408T A23403G G25563T

EPI_ISL_429473
 2020-03-23 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI365/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_429474
 2020-03-23 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI366/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429476
 2020-03-23 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI370/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429477
 2020-03-23 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI371/2020
 C241T C1059T C1302T C3037T C14408T A23403G G25563T

EPI_ISL_429478
 2020-03-23 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI372/2020
 C241T C1059T C3037T T8788C C14408T C21575T A23403G G25563T G26951A

EPI_ISL_429490
 2020-03-23 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI395/2020
 C241T C3037T C7834T C14408T G16117T A23403G

EPI_ISL_429492
 2020-03-23 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI399/2020
 C241T C1059T C1302T G2632T C3037T C14408T A23403G G25563T

EPI_ISL_429493
 2020-03-23 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI400/2020
 C241T C1059T C1302T C3037T C14408T G22299T A23403G G25563T

EPI_ISL_429496
 2020-03-23 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI403A/2020
 C241T C1059T C1302T C3037T C14408T A23403G G25563T

EPI_ISL_429506
 2020-03-23 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI411A/2020
 C241T C1059T C1302T C3037T C14408T A23403G G25563T

EPI_ISL_429508
 2020-03-23 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI412A/2020
 C241T C1059T C3037T T8788C C14408T C19512T C23114T A23403G G25563T G26951A

EPI_ISL_429510
 2020-03-23 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI413A/2020
 C241T C1059T C3037T C14408T A23403G G25563T C29200T

EPI_ISL_429512
 2020-03-23 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI414A/2020
 C241T C1059T C3037T C14408T A23403G G25563T C29200T

EPI_ISL_429563
 2020-03-23 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI484/2020
 C241T C1059T C1302T C3037T C14408T A23403G G25563T

EPI_ISL_429566
 2020-03-23 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI489/2020
 C241T C1059T C3037T T8788C C14408T A23403G G25563T G26951A C27799T

EPI_ISL_429573
 2020-03-23 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI502/2020
 C241T C1059T C3037T C13366T C14408T C21772T A23403G G25563T

EPI_ISL_429583
 2020-03-23 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI515/2020
 G1440A G2891A C4668T G11083T A15553G

EPI_ISL_429766
 2020-03-23 2020-04-24
 Luxembourg hCoV-19/Luxembourg/LNS0814393/2020
 C241T A618G C3037T T12828C C14408T C15324T A23403G GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_429776
 2020-03-23 2020-04-24
 Luxembourg hCoV-19/Luxembourg/LNS8726389/2020
 C241T C3037T C14408T C15324T A23403G C25433T C26527T C29546T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_429871
 2020-03-23 2020-04-24
 Turkey hCoV-19/Turkey/HSGM-10241/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_429873
 2020-03-23 2020-04-24
 Turkey hCoV-19/Turkey/HSGM-11520/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1437T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_429883
 2020-03-23 2020-04-24
 Taiwan hCoV-19/Taiwan/108/2020
 A1- A4G C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_429996 MT811548
 2020-03-23 2020-04-24
 Jordan SARS-CoV-2/human/JOR/SEARCH-0036-JOR/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T A23403G G25563T C25904T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_430006 MT811557
 2020-03-23 2020-04-24
 Jordan SARS-CoV-2/human/JOR/SEARCH-0048-JOR/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C7169T C14408T A23403G G25563T C25904T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_430143 MT632630
 2020-03-23 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S289/2020
 C241T C1059T G2198A C3037T C14408T C16260T A23403G G25563T C28821A

EPI_ISL_430228 MT632544
 2020-03-23 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S190/2020
 C8782T T12530C C17747T A17858G C18060T G21255C T28144C

EPI_ISL_430246 MT632522
 2020-03-23 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S208/2020
 C241T C379A C1059T T2244C C3037T C14408T A23403G G25563T

EPI_ISL_430247 MT632532
 2020-03-23 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S209/2020
 C241T C379A C1059T T2244C C3037T C14408T A23403G G25563T

EPI_ISL_430256 MT632510
 2020-03-23 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S218/2020
 C241T C379A C1059T T2244C C3037T C3177T C14408T A23403G G25563T

EPI_ISL_430792
 2020-03-23 2020-04-27
 United States hCoV-19/USA/CA-CZB0716/2020
 ATTAA1- AAAATT6518- T23590C TT26159- G28178T G29711T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_432179
 2020-03-23 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-25384/2020
 A1- C241T C3037T G11801A C14408T T19839C A23403G G25552T GGG28881AAC

EPI_ISL_432188
 2020-03-23 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-25357/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23403G C25350T

EPI_ISL_432190
 2020-03-23 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-25393/2020
 ATTA1- G1440A G2891A C25669Y G28851T

EPI_ISL_432207
 2020-03-23 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-2530C/2020
 C241T G1264A C3037T G7936R C14408T A23403G

EPI_ISL_432220
 2020-03-23 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-25375/2020
 A1- C241T G680K C3037T C14408T A23403G GGG28881AAC

EPI_ISL_432864
 2020-03-23 2020-04-29
 United Kingdom hCoV-19/England/SHEF-C83ED/2020
 C241T C3037T C11941T C14408T C15324T A23403G

EPI_ISL_433288
 2020-03-23 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR392/2020
 G1274T ATG1605- C5826T C12710T C28854T

EPI_ISL_433289
 2020-03-23 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR397/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- A11991G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_433298
 2020-03-23 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR458/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17470T C26088T T28144C ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_433302
 2020-03-23 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR473/2020
 C241T C3037T C10798A C13862T C14408T A23403G C28836T

EPI_ISL_433303
 2020-03-23 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR487/2020
 ATG1605- C12710T A17460G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_433304
 2020-03-23 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR491/2020
 C241T C3037T C5812T C14408T A23403G GGG28881AAC

EPI_ISL_433433
 2020-03-23 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB129/2020
 C241T C3037T A3911G C14408T A23403G C26028T

EPI_ISL_434267 MT632864
 2020-03-23 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S507/2020
 C241T C1059T C3037T C14408T A23403G G25563T C26408T G29553A

EPI_ISL_434297 MT632913
 2020-03-23 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S537/2020
 C6312A T6880C G11083T C13730T C23929T C28311T

EPI_ISL_434299 MT632881
 2020-03-23 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S539/2020
 C5170T C8782T C16468T T17673C C17747T A17858G C18060T T28144C

EPI_ISL_434302 MT632947
 2020-03-23 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S542/2020
 C8782T G11083T C17747T A17858G C18060T T28144C

EPI_ISL_434306 MT633004
 2020-03-23 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S546/2020
 C8782T G11083T C17747T A17858G C18060T T28144C

EPI_ISL_434312 MT632906
 2020-03-23 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S552/2020
 C241T C1059T C3037T C14408T A23403G G25563T G29553A

EPI_ISL_434460
 2020-03-23 2020-04-29
 Greece hCoV-19/Greece/38/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T G5230T C14408T A20268G A23403G G28975T TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_434462
 2020-03-23 2020-04-29
 Greece hCoV-19/Greece/47/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- A2480G C2558T G11083T C14805T G18907T C20402T G26144T TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_434463
 2020-03-23 2020-04-29
 Greece hCoV-19/Greece/46/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGG28881AAC TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_434465
 2020-03-23 2020-04-29
 Greece hCoV-19/Greece/44/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGG28881AAC TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_434541 MT419810
 2020-03-23 2020-04-29
 United States SARS-CoV2/human/USA/PR-CDC-S1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGC1- C8782T C17747T A17858G C18060T C18115T A24694T T28144C A29863G AAAA29900-

EPI_ISL_434543 MT419812
 2020-03-23 2020-04-29
 United States SARS-CoV2/human/USA/PR-CDC-S3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGC1- C8782T C17747T A17858G C18060T T28144C AAAA29900-

EPI_ISL_434545 MT419814
 2020-03-23 2020-04-29
 United States SARS-CoV2/human/USA/PR-CDC-S5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGC1- C241T C1059T C3037T G7936T C14408T A23403G G25563T AAAA29900-

EPI_ISL_434549 MT419818
 2020-03-23 2020-04-29
 United States SARS-CoV2/human/USA/PR-CDC-S9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGC1- C241T C1059T C3037T C4113T C11916T C14408T C18998T A22278G A23403G G25563T G29540A AAAA29900-

EPI_ISL_434651
 2020-03-23 2020-04-30
 Sweden hCoV-19/Sweden/20-06306/2020
 C241T C3037T C14408T A23403G C26447T GGG28881AAC

EPI_ISL_434854
 2020-03-23 2020-05-01
 United States hCoV-19/USA/TX-HMH155/2020
 T490A C3177T C8782T T18736C T23677C C24034T T26729C C27635T G28077C T28144C A29700G

EPI_ISL_434855
 2020-03-23 2020-05-01
 United States hCoV-19/USA/TX-HMH156/2020
 T490A C3177T C6040T C7764T C8782T C8950T G12478A T18736C T19713C C24034T T26729C G28077C T28144C C28896G C29451T A29700G

EPI_ISL_434856
 2020-03-23 2020-05-01
 United States hCoV-19/USA/TX-HMH157/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T

EPI_ISL_434857
 2020-03-23 2020-05-01
 United States hCoV-19/USA/TX-HMH158/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T

EPI_ISL_434858
 2020-03-23 2020-05-01
 United States hCoV-19/USA/TX-HMH159/2020
 C241T C3037T C14408T G15243T A23403G

EPI_ISL_434859
 2020-03-23 2020-05-01
 United States hCoV-19/USA/TX-HMH160/2020
 C241T C3037T A6616G C14408T G15243T A23403G

EPI_ISL_434860
 2020-03-23 2020-05-01
 United States hCoV-19/USA/TX-HMH182/2020
 C241T C1059T C3037T C10188T C14408T A23403G T24982C G25563T C27964T

EPI_ISL_434863
 2020-03-23 2020-05-01
 United States hCoV-19/USA/TX-HMH185/2020
 C8782T C17747T A17858G C18060T A24694T T28144C

EPI_ISL_434864
 2020-03-23 2020-05-01
 United States hCoV-19/USA/TX-HMH186/2020
 C241T C3037T C6706T A13868G C14408T C18877T C21767T A23403G G25563T

EPI_ISL_434865
 2020-03-23 2020-05-01
 United States hCoV-19/USA/TX-HMH189/2020
 C241T C1684T C3037T G4631A C14408T G18898T A23403G A25315G GGG28881AAC

EPI_ISL_434867
 2020-03-23 2020-05-01
 United States hCoV-19/USA/TX-HMH192/2020
 T490A C3177T C6040T C8782T C8950T G12478A T18736C C24034T T26729C G28077C T28144C C28896G C29451T A29700G

EPI_ISL_434868
 2020-03-23 2020-05-01
 United States hCoV-19/USA/TX-HMH193/2020
 C241T C3037T C14408T G15243T A23403G

EPI_ISL_434870
 2020-03-23 2020-05-01
 United States hCoV-19/USA/TX-HMH195/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T

EPI_ISL_434871
 2020-03-23 2020-05-01
 United States hCoV-19/USA/TX-HMH196/2020
 C241T C3037T G11083T C14408T C18877T A23403G G25563T

EPI_ISL_435420
 2020-03-23 2020-05-04
 Hungary hCoV-19/Hungary/MBL-002/2020
 C241T C3037T C14408T A20268G A23403G G25483A

EPI_ISL_436044
 2020-03-23 2020-05-05
 United States hCoV-19/USA/LA-CDC-1894/2020
 C241T C1059T C3037T C10188T C14408T A23403G T24982C G25563T C27964T G29543T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_436098
 2020-03-23 2020-05-06
 Australia hCoV-19/Australia/QLDID936/2020
 A1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_436316
 2020-03-23 2020-05-06
 Spain hCoV-19/Spain/Valencia221/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C14408T A20268G A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_436466
 2020-03-23 2020-05-06
 United States hCoV-19/USA/PA-MGSC11-04/2020
 C241T C3037T C13019T C14408T A20268G A23403G C29585T AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_436476
 2020-03-23 2020-05-06
 United States hCoV-19/USA/PA-MGSC23-05/2020
 C241T C1059T C1387T C3037T C14408T A20755C T22114C A23403G G25563T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_436502
 2020-03-23 2020-05-06
 United States hCoV-19/USA/PA-MGSC55-05/2020
 C241T C1059T C3037T C14408T C15240T A23403G G25563T C28807T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_436838 MT439261
 2020-03-23 2020-05-06
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20117/2020
 ATTAAAGGTTTATACCTT1- C241T C1059T C3037T C10525T C14408T A23403G G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_436841 MT439262
 2020-03-23 2020-05-06
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20149/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25563T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_436842 MT439280
 2020-03-23 2020-05-06
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20152/2020
 ATTAAAGGTTTATACC1- C241T C703T C1059T C3037T C14408T A23403G G25563T G26713T C27679Y AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_436843 MT439270
 2020-03-23 2020-05-06
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20183/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25563T C25976A TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_436978
 2020-03-23 2020-05-08
 Denmark hCoV-19/Denmark/ALAB-SSI-579/2020
 C241T C3037T C13862T C14408T A23403G C28836T G28954A

EPI_ISL_437015
 2020-03-23 2020-05-08
 Denmark hCoV-19/Denmark/ALAB-SSI-643/2020
 C241T C1059T C3037T C11074T C14408T A23403G G25563T

EPI_ISL_437089
 2020-03-23 2020-05-08
 Latvia hCoV-19/Latvia/010/2020
 C241T C3037T C9344T C14408T A23403G

EPI_ISL_437091
 2020-03-23 2020-05-08
 Latvia hCoV-19/Latvia/012/2020
 C241T C3037T T9727C C14408T C19488T A23403G GGG28881AAC

EPI_ISL_437094
 2020-03-23 2020-05-08
 Latvia hCoV-19/Latvia/015/2020
 C241T C3037T TG13575CT C14408T A23403G GGG28881AAC

EPI_ISL_437095
 2020-03-23 2020-05-08
 Latvia hCoV-19/Latvia/016/2020
 C241T C1059T C1302T C3037T C14408T A23403G G25563T

EPI_ISL_437096
 2020-03-23 2020-05-08
 Latvia hCoV-19/Latvia/017/2020
 C241T C1968T C3037T C14408T A23403G C27769T GGG28881AAC

EPI_ISL_437237
 2020-03-23 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0038/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_437459
 2020-03-23 2020-05-09
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Makkah03/2020
 ATTAAAGGTTT1- C8782T G14122T G22468T T28144C G28878A G29742A AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_437460
 2020-03-23 2020-05-09
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Makkah04/2020
 ATTAAAGGTTTATACC1- C8782T G14122T G22468T T28144C G28878A G29742A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_437461
 2020-03-23 2020-05-09
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Makkah05/2020
 ATTAAAGGTT1- C8782T G14122T G22468T G25494T T28144C G28878A G29742A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_437462
 2020-03-23 2020-05-09
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Makkah06/2020
 ATTAAAGGTTTATACC1- C8782T G14122T G22468T C24904T T28144C G28878A G29742A AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_437463
 2020-03-23 2020-05-09
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Makkah09/2020
 ATTAAAGGTTTATACCTTCC1- C241T C2113T C3037T C7765T C14408T C18877T G20548T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_437464
 2020-03-23 2020-05-09
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Makkah10/2020
 ATTAAAGGTTTATACCTT1- C84T C241T C3037T C14408T C18877T A23403G G25563T C26735T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_437465
 2020-03-23 2020-05-09
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Makkah12/2020
 ATTAAAGGTTTATAC1- G5580T A6708T C8782T G9242T C12115T T12184C G19627A G22468T G24434T T28144C G28878A G29742A A29887C A29892C A29894G -29901T

EPI_ISL_437466
 2020-03-23 2020-05-09
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Makkah13/2020
 ATTA1- C8782T G14122T C14408T G22468T T28144C G28878A G29742A A29884C A29889C A29891G A29898T AA29902-

EPI_ISL_437467
 2020-03-23 2020-05-09
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Makkah18/2020
 ATTAAAGGTTTATAC1- C8782T G9242T C13119T G13286T G15190T G18017T G18020T C20429T G22468T G24434T T28144C G28878A G29742A A29884C A29889C A29891G A29898T AA29902-

EPI_ISL_437513
 2020-03-23 2020-05-11
 United States hCoV-19/USA/AK-PHL034/2020
 ATTAAAG1- C241T C1059T C3037T C14408T G15760A A23403G G25563T G26062T

EPI_ISL_437514
 2020-03-23 2020-05-11
 United States hCoV-19/USA/AK-PHL041/2020
 ATTAAAGGTTTATA1- C241T C313T C3037T C14408T G19518T A23403G G28845T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_437588
 2020-03-23 2020-05-11
 United States hCoV-19/USA/CA-SR0193/2020
 C241T C1059T C1887T C3037T C14408T A17615G A23403G G25563T C29870A

EPI_ISL_437594
 2020-03-23 2020-05-11
 United States hCoV-19/USA/CA-SR0184/2020
 C241T C1059T C3037T C14408T A23403G C24064T G25563T

EPI_ISL_437897 MT459903
 2020-03-23 2020-05-11
 Greece SARS-CoV-2/human/GRC/40_36244/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G A26114T GGG28881AAC C29364G C29754T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_437899 MT459905
 2020-03-23 2020-05-11
 Greece SARS-CoV-2/human/GRC/42_36236/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- A187G C241T C3037T C14408T A23403G C25916T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_437955
 2020-03-23 2020-05-12
 Austria hCoV-19/Austria/CeMM0094/2020
 C241T C1059T C3037T C6843T C14408T G20709T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_437956
 2020-03-23 2020-05-12
 Austria hCoV-19/Austria/CeMM0095/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_437957
 2020-03-23 2020-05-12
 Austria hCoV-19/Austria/CeMM0096/2020
 C241T C1059T C3037T T5422Y C14408T G20709K T22521K A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_438088
 2020-03-23 2020-05-12
 Austria hCoV-19/Austria/CeMM0259/2020
 C241T C3037T C14408T T19839C T22521K A23403G C27393T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_438089
 2020-03-23 2020-05-12
 Austria hCoV-19/Austria/CeMM0260/2020
 C241T C3037T C14408T A20268G T22521K A23403G G29734C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_438090
 2020-03-23 2020-05-12
 Austria hCoV-19/Austria/CeMM0261/2020
 C241T C3037T C14408T A20268G T22521K A23403G G29734C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_438092
 2020-03-23 2020-05-12
 Austria hCoV-19/Austria/CeMM0263/2020
 C1722Y C8782T T9530G C15017Y C16699S C18452Y T22521K C26088T T27801C T28144C G29736T TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_438093
 2020-03-23 2020-05-12
 Austria hCoV-19/Austria/CeMM0264/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC AAAAAAAAAA29894-

EPI_ISL_438094
 2020-03-23 2020-05-12
 Austria hCoV-19/Austria/CeMM0265/2020
 C241T C3037T C14408T T22521K A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_438155
 2020-03-23 2020-05-12
 United States hCoV-19/USA/WA-S602/2020
 C241T C1059T C3037T C11916T C14408T A23403G C24099T G25563T

EPI_ISL_438235
 2020-03-23 2020-05-12
 United States hCoV-19/USA/MD-HP00078/2020
 C241T C1059T C3037T C14408T G17808T A23403G G25563T

EPI_ISL_439066
 2020-03-23 2020-05-12
 United Kingdom hCoV-19/Scotland/CVR377/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- A11991G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_439076
 2020-03-23 2020-05-12
 United Kingdom hCoV-19/Scotland/CVR405/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A T13216G C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_439080
 2020-03-23 2020-05-12
 United Kingdom hCoV-19/Scotland/CVR453/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C3037T C14408T A23403G C29739A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_439081
 2020-03-23 2020-05-12
 United Kingdom hCoV-19/Scotland/CVR475/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C12525T C12710T C26447T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_439082
 2020-03-23 2020-05-12
 United Kingdom hCoV-19/Scotland/CVR519/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C988T G11083T C14805T T17247C G26144T C29095T C29585T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_439148
 2020-03-23 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB137/2020
 A2480G C2558T G11083T C14805T G26144T

EPI_ISL_439613
 2020-03-23 2020-05-12
 United Kingdom hCoV-19/England/CAMB-726DA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1113T ATG1605- A3569G A29771G CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_439635
 2020-03-23 2020-05-12
 United Kingdom hCoV-19/England/CAMB-72731/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G4185A G11083T C14805T T25202K G26144T C29013T AAAAA29899-

EPI_ISL_439644
 2020-03-23 2020-05-12
 United Kingdom hCoV-19/England/CAMB-72740/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G C9223T G11083T C14805T T17247C G26144T

EPI_ISL_439882
 2020-03-23 2020-05-12
 United Kingdom hCoV-19/England/CAMB-72704/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14120T C14408T A23403G T25202K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_439945
 2020-03-23 2020-05-12
 United Kingdom hCoV-19/England/CAMB-72573/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G16365T A20268G A23403G T25202K G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_441355
 2020-03-23 2020-05-12
 United Kingdom hCoV-19/Northern Ireland/NIRE-101EF5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- ATG1605- C17999T C26022T AAAAA29899-

EPI_ISL_441357
 2020-03-23 2020-05-12
 United Kingdom hCoV-19/Northern Ireland/NIRE-101F3E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T C8389Y C14408T A23403G GGG28881AAC

EPI_ISL_441359
 2020-03-23 2020-05-12
 United Kingdom hCoV-19/Northern Ireland/NIRE-101F6B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- ATG1605- C3486T C6696T C11001T C21846T

EPI_ISL_441360
 2020-03-23 2020-05-12
 United Kingdom hCoV-19/Northern Ireland/NIRE-101F7A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_441363
 2020-03-23 2020-05-12
 United Kingdom hCoV-19/Northern Ireland/NIRE-101FD4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- ATG1605- C6696T C11001T T22729C C25844T

EPI_ISL_441364
 2020-03-23 2020-05-12
 United Kingdom hCoV-19/Northern Ireland/NIRE-101FE3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- ATG1605- C6696T C11001T T22729C C23934T C25844T

EPI_ISL_441367
 2020-03-23 2020-05-12
 United Kingdom hCoV-19/Northern Ireland/NIRE-10201C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A1515R A2480R C2558Y C6664Y C9223Y G11083T C13517Y C14805T T17247Y G23069R G26144T G28325K

EPI_ISL_441370
 2020-03-23 2020-05-12
 United Kingdom hCoV-19/Northern Ireland/NIRE-102049/2020
 ATTAAAGGTTTATACC1- ATG1605- C7423T C28770T G29254T

EPI_ISL_441399
 2020-03-23 2020-05-12
 United Kingdom hCoV-19/Northern Ireland/NIRE-1022DA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1420T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_441402
 2020-03-23 2020-05-12
 United Kingdom hCoV-19/Northern Ireland/NIRE-102313/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C14408T A23403G C25350T

EPI_ISL_441403
 2020-03-23 2020-05-12
 United Kingdom hCoV-19/Northern Ireland/NIRE-102322/2020
 ATTAA1- ATG1605- T1927A C10989T C25546T

EPI_ISL_443270
 2020-03-23 2020-05-12
 France hCoV-19/France/B5353/2020
 C36T C241T C3037T C14408T C15324T C18904T A23403G G25606T C27893T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_443283
 2020-03-23 2020-05-12
 France hCoV-19/France/B5465/2020
 C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAA29882-

EPI_ISL_443301
 2020-03-23 2020-05-12
 France hCoV-19/France/IDF3359/2020
 AT1- T10C -12TA C241T C3037T C14408T C15324T G20238T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_443302
 2020-03-23 2020-05-12
 France hCoV-19/France/IDF3368/2020
 C241T C1059T C3037T A8998G C14408T A23403G G25563T C26873T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_443311
 2020-03-23 2020-05-12
 France hCoV-19/France/IDF4423/2020
 C241T AAGTCATTT686- C2416T C3037T G8371T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_443317
 2020-03-23 2020-05-12
 France hCoV-19/France/IDF4432/2020
 C241T C2416T C3037T G8371T C8905T C14408T C15738T A23403G G25563T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_444300
 2020-03-23 2020-05-13
 United Kingdom hCoV-19/England/BIRM-5E73B/2020
 C8782T T14996C C17747T A17858G C18060T T27384C T28144C G28632C

EPI_ISL_444612
 2020-03-23 2020-05-14
 Australia hCoV-19/Australia/QLDID938/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C1059T C3037T C14408T A23403G G25563T C27559T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_444984
 2020-03-23 2020-05-14
 Spain hCoV-19/Spain/Barcelona_VH6552/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCT1- C241T C3037T G5230T C14408T A20268G A23403G

EPI_ISL_444985
 2020-03-23 2020-05-14
 Spain hCoV-19/Spain/Barcelona_VH6837/2020
 ATTAAAGGTTTATACCTTC1- C241T C3037T C14408T A20268G A23403G G29734C

EPI_ISL_445079
 2020-03-23 2020-05-14
 United States hCoV-19/USA/TX_GCID_192000052/2020
 ATT1GCC A5T GG7- C241T C1059T C3037T G3892T C14408T A23403G G25563T A29883G A29889G A29891T A29893T A29895C

EPI_ISL_445081
 2020-03-23 2020-05-14
 United States hCoV-19/USA/TX_GCID_192000088/2020
 ATTAAAGGTT1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_445183 LC546038
 2020-03-23 2020-05-15
 Japan SARS-CoV-2/Hu/Kng/19-865
 ATTAAAGGTT1- C241T C3037T C14408T A16085G A20268G A23403G AAAAAAAAAAAAAAAAA29887-

EPI_ISL_445223
 2020-03-23 2020-05-15
 Sweden hCoV-19/Sweden/20-06208/2020
 C241T C3037T C12213T C14408T A23403G GGG28881AAC

EPI_ISL_445298
 2020-03-23 2020-05-15
 Chile hCoV-19/Chile/Rancagua_8/2020
 A1T -6T C241T C3037T G10265A C14408T G15846R C19554M A23403G GGG28881AAC G29398T T29840G GATTTTAATAGCTTCTTAGGAGAATG29843- AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_445300
 2020-03-23 2020-05-15
 Chile hCoV-19/Chile/Rancagua_9/2020
 A1T T3A A5T C241T T1606C C3037T A12506R C14408T A23403G GGG28881AAC G29861C AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_445328
 2020-03-23 2020-05-15
 Chile hCoV-19/Chile/Santiago_49/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGA1- C241T G1319A C3037T C8389T A12506R C14408T A23403G G25563T ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_445329
 2020-03-23 2020-05-15
 Chile hCoV-19/Chile/Santiago_50/2020
 A1GGTTTATGATCCTTTGCAACCTGAATTAGACTCA A4C T9C TAT11CTC CC15GT T76W T78K ATG1605- C23934T C24034T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_445330
 2020-03-23 2020-05-15
 Chile hCoV-19/Chile/Santiago_51/2020
 ATTAAAGGTTTATACCT1- C241T C3037T A12506R C14408T C17766T A23403G G25429T ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_445341
 2020-03-23 2020-05-15
 Chile hCoV-19/Chile/Temuco_6/2020
 A1CCAACAACACAGTTTATGATCCTTTGCAACCTGAATTACAA T3G C241T C3037T C8389T C14408T A23403G G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_447127
 2020-03-23 2020-05-16
 Belgium hCoV-19/Belgium/ULG-0184/2020
 G1440A G2891A C26340T

EPI_ISL_447128
 2020-03-23 2020-05-16
 Belgium hCoV-19/Belgium/ULG-0186/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_447168 MT506685
 2020-03-23 2020-05-16
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20197/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_447212 MT506681
 2020-03-23 2020-05-16
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20242/2020
 T490A G922A C3177T C8782T T18736C C24034T T26729C G28077C T28144C A29700G

EPI_ISL_447305
 2020-03-23 2020-05-17
 Israel hCoV-19/Israel/701002403/2020
 C241T C3037T C14408T A23403G AAAAAAAAAAAA29892-

EPI_ISL_447833 MT459834
 2020-03-23 2020-05-11
 Greece SARS-CoV-2/human/GRC/50_36277/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_447886 MT481992
 2020-03-23 2020-05-18
 United States SARS-CoV-2/human/USA/CA-CDC-0139/2020
 A12631G

EPI_ISL_447886 MT481992
 2020-03-23 2020-05-18
 United States SARS-CoV-2/human/USA/CA-CDC-0139/2020
 A12631G

EPI_ISL_448814
 2020-03-23 2020-05-19
 United Kingdom hCoV-19/England/OXON-AF14C/2020
 C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC G29422T

EPI_ISL_448821
 2020-03-23 2020-05-19
 United Kingdom hCoV-19/England/OXON-AF294/2020
 C2558T C6408T G11083T C14805T G26144T G28851T

EPI_ISL_450191
 2020-03-23 2020-05-20
 United States hCoV-19/USA/CA-SR0347/2020
 C241T C1059T C3037T C14408T C16762T A23403G G25563T

EPI_ISL_450462 MT499188
 2020-03-23 2020-05-21
 United States SARS-CoV-2/human/USA/CA-CZB-1213/2020
 ATTAAAGGTTT1- C241T C1059T C2980T C3037T C3096T A8882G C14408T C17125T A23403G G25563T C25587T

EPI_ISL_450463 MT499189
 2020-03-23 2020-05-21
 United States SARS-CoV-2/human/USA/CA-CZB-1214/2020
 A1- C241T C1059T C2980T C3037T C3096T A8882G C14408T C17125T A23403G G25563T C25587T

EPI_ISL_450464 MT499190
 2020-03-23 2020-05-21
 United States SARS-CoV-2/human/USA/CA-CZB-1215/2020
 T606C G1440A G2891A C7011T C18796T T21144C G28812T

EPI_ISL_450465 MT499191
 2020-03-23 2020-05-21
 United States SARS-CoV-2/human/USA/CA-CZB-1216/2020
 ATTAA1- C241T C1059T C3037T C14408T A21562G A23403G G25563T

EPI_ISL_450466 MT499192
 2020-03-23 2020-05-21
 United States SARS-CoV-2/human/USA/CA-CZB-1217/2020
 C241T C3037T C14408T G22021T A23403G GGG28881AAC

EPI_ISL_450467 MT499193
 2020-03-23 2020-05-21
 United States SARS-CoV-2/human/USA/CA-CZB-1218/2020
 A1- C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_451087
 2020-03-23 2020-05-23
 Australia hCoV-19/Australia/SAP048/2020
 C241T C3037T C14408T C15324T G22918T A23403G G28690T

EPI_ISL_451148
 2020-03-23 2020-05-23
 Australia hCoV-19/Australia/SAP154/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- T490A C3177T C8782T T18736C G19684T C23130A C24034T T26729C C27635T G28077C T28144C A29700G

EPI_ISL_451941
 2020-03-23 2020-05-25
 Germany hCoV-19/Germany/BAV-MVP0124/2020
 C241T C1059T C3037T C14408T G22340T A23403G G25563T T27384C

EPI_ISL_452121 MT512421
 2020-03-23 2020-05-26
 United States SARS-CoV-2/human/USA/VI-CDC-3661/2020
 C241T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_452122 MT512422
 2020-03-23 2020-05-26
 United States SARS-CoV-2/human/USA/VI-CDC-3705/2020
 C8782Y C17747T A17858G C18060T A24694T C25521Y T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_452123 MT512423
 2020-03-23 2020-05-26
 United States SARS-CoV-2/human/USA/VI-CDC-3688/2020
 C8782Y T10771C A11957G C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_452182
 2020-03-23 2020-05-27
 Italy hCoV-19/Italy/VR_20COV11-181/2020
 TTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATC2- C241T C3037T C14408T A23403G C26873Y C27046T GGG28881AAC TGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29785-

EPI_ISL_452230
 2020-03-23 2020-05-27
 Sweden hCoV-19/Sweden/20-06165/2020
 C241T C3037T C14195A C14408T A23403G

EPI_ISL_452231
 2020-03-23 2020-05-27
 Sweden hCoV-19/Sweden/20-06167/2020
 C241T AAGTCATTT686- C1059T C3037T C4965T C14408T A23403G G25563T

EPI_ISL_452232
 2020-03-23 2020-05-27
 Sweden hCoV-19/Sweden/20-06169/2020
 C241T C14195A C14408T A23403G

EPI_ISL_452233
 2020-03-23 2020-05-27
 Sweden hCoV-19/Sweden/20-06209/2020
 C241T C3037T C12213T C14408T A23403G GGG28881AAC

EPI_ISL_452553
 2020-03-23 2020-05-27
 Spain hCoV-19/Spain/COV001320/2020
 G376T C8782T T9477A G12707R C14805T G25979T T27328Y T28144C C28657T C28863T

EPI_ISL_453477
 2020-03-23 2020-05-27
 United Kingdom hCoV-19/Northern Ireland/NIRE-101EE6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- ATG1605- C6696T C11001T T22729C C25844T C29870M

EPI_ISL_453478
 2020-03-23 2020-05-27
 United Kingdom hCoV-19/Northern Ireland/NIRE-101F10/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1420T C3037T C6720Y C14408T A23403G GGG28881AAC

EPI_ISL_453479
 2020-03-23 2020-05-27
 United Kingdom hCoV-19/Northern Ireland/NIRE-101F2F/2020
 ATTAAAGGTTTATACCTTCCCAG1- ATG1605- C14183T G29747K

EPI_ISL_453480
 2020-03-23 2020-05-27
 United Kingdom hCoV-19/Northern Ireland/NIRE-101F4D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C12747T C14408T A23403G C25350T

EPI_ISL_453481
 2020-03-23 2020-05-27
 United Kingdom hCoV-19/Northern Ireland/NIRE-101F98/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- ATG1605- C6696T C11001T C13458T C29870M

EPI_ISL_453482
 2020-03-23 2020-05-27
 United Kingdom hCoV-19/Northern Ireland/NIRE-101FA7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- ATG1605- A2404T C6696T C11001T G26158A

EPI_ISL_453483
 2020-03-23 2020-05-27
 United Kingdom hCoV-19/Northern Ireland/NIRE-101FC5/2020
 ATTAAAGGTTTATACC1- ATG1605- C6696T C11001T

EPI_ISL_453489
 2020-03-23 2020-05-27
 United Kingdom hCoV-19/England/NORT-288DF8/2020
 C241T C3037T A11755G C14408T A23403G C27046T GGG28881AAC

EPI_ISL_453826
 2020-03-23 2020-05-28
 Portugal hCoV-19/Portugal/PT0110/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C7604T C14408T A20268G A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_453840
 2020-03-23 2020-05-28
 Portugal hCoV-19/Portugal/PT0124/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- C8782T C26088T T28144C CGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29754-

EPI_ISL_453844
 2020-03-23 2020-05-28
 Portugal hCoV-19/Portugal/PT0128/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C8140T C8782T C26088T T28144C TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_453846
 2020-03-23 2020-05-28
 Portugal hCoV-19/Portugal/PT0130/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C8140T C8782T C26088T T28144C TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454137
 2020-03-23 2020-05-28
 Portugal hCoV-19/Portugal/PT0413/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454167
 2020-03-23 2020-05-28
 Portugal hCoV-19/Portugal/PT0443/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T G4201T G10700A C14408T A23403G A23941T C26527T G28842T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454245
 2020-03-23 2020-05-28
 Portugal hCoV-19/Portugal/PT0521/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454246
 2020-03-23 2020-05-28
 Portugal hCoV-19/Portugal/PT0522/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454247
 2020-03-23 2020-05-28
 Portugal hCoV-19/Portugal/PT0523/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T T8041C C14408T G16117T A23403G G26792T C26892T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454248
 2020-03-23 2020-05-28
 Portugal hCoV-19/Portugal/PT0524/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454249
 2020-03-23 2020-05-28
 Portugal hCoV-19/Portugal/PT0525/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T C19862T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454355
 2020-03-23 2020-05-28
 United States hCoV-19/USA/PA-MGEL65/2020
 C241T C1059T C3037T C14408T A23403G G25563T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_454361
 2020-03-23 2020-05-28
 United States hCoV-19/USA/PA-MGEL75/2020
 T224C C8782T A18399G C18647T C25549T G25740T G25947T T26465C T28144C C29095T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_454766
 2020-03-23 2020-05-29
 Netherlands hCoV-19/Netherlands/Utrecht_10017/2020
 ATTAA1- C241T C3037T C4999T C14408T C19170T G19509A A23403G C26313T GGG28881AAC GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_454767
 2020-03-23 2020-05-29
 Netherlands hCoV-19/Netherlands/Utrecht_10018/2020
 ATTAAAGGTTT1- C241T C3037T C14408T A23403G A24862G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_454771
 2020-03-23 2020-05-29
 Netherlands hCoV-19/Netherlands/Utrecht_10022/2020
 ATTAAA1- C241T C3037T C14408T A23403G G24077T AAAAAA29898-

EPI_ISL_455588
 2020-03-23 2020-06-01
 Thailand hCoV-19/Thailand/Trang_5008/2020
 C241T C3037T C14408T C19170T G19509A A23014C A23403G GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_455701
 2020-03-23 2020-06-01
 Vietnam hCoV-19/Vietnam/VNHN_1713/2020
 C241T C3037T C14408T G21724T A23403G GGG28881AAC

EPI_ISL_456218
 2020-03-23 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1451/2020
 G1440A G2891A A6944G C9430T C26042T

EPI_ISL_456228
 2020-03-23 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1618/2020
 C241T C1427T C3037T G3419A C14408T A23403G GGG28881AAC

EPI_ISL_456236
 2020-03-23 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1626/2020
 C3096T G11083T C12781T G13627T C14805T C15540T G17944T G26144T A28338G A29731G

EPI_ISL_456255
 2020-03-23 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1796/2020
 C241T G370A C3037T G11083T C14408T C18877T A23403G G25563T G26834T

EPI_ISL_456256
 2020-03-23 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1797/2020
 C241T C1267T C3037T C14408T G14580T A23403G G28378A

EPI_ISL_456656
 2020-03-23 2020-06-01
 United States hCoV-19/USA/UN-NR-52282/2020
 ATTAAAGGTTTATA1- C1663T C8782T C12919T C21636T G22661T G23607A C24034T C24566G T26729C TTTTAAAGTTTCCATTTGGAATCTTGA27264- G28077C T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_457099
 2020-03-23 2020-06-02
 United Kingdom hCoV-19/England/EXET-1357C0/2020
 ATG1605- C20270T C28087T A29683T

EPI_ISL_458642
 2020-03-23 2020-06-04
 United Kingdom hCoV-19/England/NORT-288E40/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C2091T G7393T A10323G G11083T C14805T T17247C G26144T C28377T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_459559
 2020-03-23 2020-06-04
 United Kingdom hCoV-19/Scotland/GCVR-1704C2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C22879A A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_459696
 2020-03-23 2020-06-04
 United Kingdom hCoV-19/Scotland/GCVR-170107/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C988T G1857T A5570G A9483G G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_460055
 2020-03-23 2020-06-05
 United States hCoV-19/USA/MN-MDH-152/2020
 ATTA1- C241T C1059T C3037T C10319T C11575T C14408T A20262G G21305A A23403G G25563T C27964T C28868T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_460056
 2020-03-23 2020-06-05
 United States hCoV-19/USA/MN-MDH-156/2020
 ATTA1- C241T C1059T A2969G C3037T C14408T A23403G G25563T G26389T T26545C C27964T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_460057
 2020-03-23 2020-06-05
 United States hCoV-19/USA/MN-MDH-162/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C9430T C14408T C14925T C18652T A23403G G25563T TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_460058
 2020-03-23 2020-06-05
 United States hCoV-19/USA/MN-MDH-163/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C1238T C8782T C17747T A17858G C18060T T28144C T28924C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_460059
 2020-03-23 2020-06-05
 United States hCoV-19/USA/MN-MDH-164/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C14786T A23403G GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_460154 MT520229
 2020-03-23 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00013/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C241T C2416T C3037T G11083T C14408T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460174 MT520249
 2020-03-23 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00059/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C958T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_460264 MT520339
 2020-03-23 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00049/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C4551T C8782T C12890T C17747T A17858G C18060T A24694T T28144C ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_460271 MT520346
 2020-03-23 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00014/2020
 A1- C241T T2149C C2416T C3037T C14408T A23403G G25563T G26233T C27577T C29545T

EPI_ISL_460291 MT520366
 2020-03-23 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00048/2020
 ATTAAA1- C241T C313T C3037T C14408T C21058T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_460324 MT520399
 2020-03-23 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00024/2020
 ATTA1- C241T C3037T G8653T C14408T A23403G GGG28881AAC

EPI_ISL_460391 MT520466
 2020-03-23 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00083/2020
 ATTAAAGGTTTAT1- C241T C1059T C3037T C6762T C14408T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460446 MT520521
 2020-03-23 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00071/2020
 ATTAAA1- C8782T C17747T A17858G C18060T A24694T T28144C AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_460677
 2020-03-23 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_504/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T13006C C14408T G20433T A23403G G25563T C25688T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461151
 2020-03-23 2020-06-06
 Netherlands hCoV-19/Netherlands/NoordBrabant_116/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- C3876T G8353T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461152
 2020-03-23 2020-06-06
 Netherlands hCoV-19/Netherlands/NoordBrabant_117/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C14583T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_462263
 2020-03-23 2020-06-08
 Belgium hCoV-19/Belgium/DJ-0323409/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G17964T A23403G A24862G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462264
 2020-03-23 2020-06-08
 Belgium hCoV-19/Belgium/KWA-0323410/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C12534T C26088T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462462
 2020-03-23 2020-06-08
 Bosnia and Herzegovina hCoV-19/Bosnia and Herzegovina/ChVir7357/2020
 ATTAAAGGTTTATA1- C241T C3037T C14408T A23403G T25550A G25922T A26530G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_462924
 2020-03-23 2020-06-08
 United States hCoV-19/USA/WY-WYPHL-00031/2020
 ATTA1- C8782T A17858G C18060T A20465R A21141G A24694T T28144C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_463744
 2020-03-23 2020-06-10
 Cyprus hCoV-19/Cyprus/004/2020
 C241T A2869G C3037T C14408T C17733T A23403G GGG28881AAC C29095T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_465700
 2020-03-23 2020-06-11
 Canada hCoV-19/Canada/Qc-L00241214/2020
 ATT1- C241T C3037T G3539R C14408T A20268G A23403G G27204T C28854T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_467375
 2020-03-23 2020-06-13
 Indonesia hCoV-19/Indonesia/MND-EIJK06/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAG1- G242T T12283C G29853T AAAAAAAAAAAAAAAAAAAAAA29882-

EPI_ISL_468308
 2020-03-23 2020-06-16
 Brazil hCoV-19/Brazil/SPBR-141/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C3037T C3885T C14408T A23403G G25088T GGG28881AAC AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_468313
 2020-03-23 2020-06-16
 Brazil hCoV-19/Brazil/SPBR-148/2020
 GT24CA C241T C3037T C14408T A23403G G25088T GGG28881AAC C29774T A29860G AAAAAAAAAAAAA29891-

EPI_ISL_468399 MT628135
 2020-03-23 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1428/2020
 C241T C379A C1059T C3037T C14408T A23403G G25012A G25563T

EPI_ISL_468400 MT628136
 2020-03-23 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1430/2020
 C8782T C17747T A17858G C18060T T27384C T28144C C28977Y TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_468402 MT628138
 2020-03-23 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1432/2020
 C241T C1059T C2536T C3037T C14408T G16852T A23403G G25563T C27964T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_468727
 2020-03-23 2020-06-17
 Belgium hCoV-19/Belgium/UGent-76/2020
 T514C ATG1605- G14622T C17410T T18723C

EPI_ISL_468817
 2020-03-23 2020-06-17
 Spain hCoV-19/Spain/Zaragoza2425/2020
 C7945T C8782T G11146C C17470T G25939T C26088T T26187C G27659R T28144C C28844T

EPI_ISL_471256
 2020-03-23 2020-06-19
 United States hCoV-19/USA/WI-WSLH-200092/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6027T A10236G G11083T C14805T C16887T T17247C G21624C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471550
 2020-03-23 2020-06-22
 Czech Republic hCoV-19/Czech Republic/NRL_5240/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A C25703T A27669G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471975
 2020-03-23 2020-06-23
 United Kingdom hCoV-19/England/EXET-137403/2020
 C241T G2164A C3037T C14408T A23403G GGG28881AAC

EPI_ISL_475076
 2020-03-23 2020-06-23
 Belgium hCoV-19/Belgium/UGent-116/2020
 C241T C1059T C3037T C9891T C14408T G19384A A23403G G25563T

EPI_ISL_475077
 2020-03-23 2020-06-23
 Belgium hCoV-19/Belgium/UGent-117/2020
 C241T C3037T C5730T C14408T G14829T C15324T C20178T A23403G

EPI_ISL_475099
 2020-03-23 2020-06-23
 Sweden hCoV-19/Sweden/20-08387/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T

EPI_ISL_475141
 2020-03-23 2020-06-23
 Sweden hCoV-19/Sweden/20-50457/2020
 C241T C3037T C14408T C21855T A23403G C27046T GGG28881AAC

EPI_ISL_475378
 2020-03-23 2020-06-23
 United Kingdom hCoV-19/England/SHEF-C4C5F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G11083T C14805T G26144T C26735T C26885T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475509
 2020-03-23 2020-06-23
 United Kingdom hCoV-19/England/SHEF-D333A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C2558T G11083T C14805T G26144T C29167T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476772
 2020-03-23 2020-06-25
 United States hCoV-19/USA/CA-CZB-1755/2020
 ATTAAAGGTTTATACC1- GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_476787
 2020-03-23 2020-06-25
 United States hCoV-19/USA/CA-CZB-1770/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_476898
 2020-03-23 2020-06-26
 United States hCoV-19/USA/AK-PHL141/2020
 ATTAAAGGTTTATACCTTCC1- A4236G G11083T C14805T C18032A T25655C G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_476899
 2020-03-23 2020-06-26
 United States hCoV-19/USA/AK-PHL142/2020
 ATT1- C241T T833C C1059T C3037T C14408T G15913T A23403G G25563T C27964T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_477199
 2020-03-23 2020-06-29
 Italy hCoV-19/Italy/IZSPB_2167/2020
 A1CCGCCCGA C241T C3037T C7834T C14408T A23403G GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_477200
 2020-03-23 2020-06-29
 Italy hCoV-19/Italy/IZSPB_2161/2020
 ATTAAAGGTTT1- C241T C3037T C7834T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_477201
 2020-03-23 2020-06-29
 Italy hCoV-19/Italy/IZSPB_2144/2020
 A1CCCTGA C241T C3037T C14408T A23403G AAAAA29871CTTCT A29877G AAA29881GTG AAAAAAAAAAAAAAAAAAA29885-

EPI_ISL_477696
 2020-03-23 2020-06-29
 United States hCoV-19/USA/WA-UW-2036/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A31T C36T C241T C1059T C3037T C14408T A23403G G25523T G25563T T27869C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_478565
 2020-03-23 2020-06-30
 United Kingdom hCoV-19/England/NORT-284767/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G11083T C14805T G26144T C27208T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478566
 2020-03-23 2020-06-30
 United Kingdom hCoV-19/England/NORT-284785/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478567
 2020-03-23 2020-06-30
 United Kingdom hCoV-19/England/NORT-2847B2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G7459T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478571
 2020-03-23 2020-06-30
 United Kingdom hCoV-19/England/NORT-2848BF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G545A C4755T G7405T G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479642
 2020-03-23 2020-07-01
 Canada hCoV-19/Canada/NB-226/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C289T C1059T C3037T C14408T A23403G G25563T ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_479667 MT679201
 2020-03-23 2020-06-29
 United States SARS-CoV-2/human/USA/NYU-VC-010/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T C11916T C14408T A23403G G25563T G29540A AAAAAAAAAAAAA29891-

EPI_ISL_479927
 2020-03-23 2020-07-01
 Japan hCoV-19/Japan/PG-0232/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- T42C C8782T C12081T G16381A T17877C T28144C G28878A G29742A AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_479936
 2020-03-23 2020-07-01
 Japan hCoV-19/Japan/PG-0251/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C2416T C3037T C14408T C21575T A23403G G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_479943
 2020-03-23 2020-07-01
 Japan hCoV-19/Japan/PG-0259/2020
 ATTAAAG1- C241T C313T C3037T C9430T C14408T G22199T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479962
 2020-03-23 2020-07-01
 Japan hCoV-19/Japan/PG-0283/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G A23977G GGG28881AAC G29764T TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_479963
 2020-03-23 2020-07-01
 Japan hCoV-19/Japan/PG-0284/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C2902T C3037T C14408T A23403G GGG28881AAC TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_479964
 2020-03-23 2020-07-01
 Japan hCoV-19/Japan/PG-0285/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C11752T C25665T C26447T TTA27698- T28912C GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_479965
 2020-03-23 2020-07-01
 Japan hCoV-19/Japan/PG-0286/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C11752T C25665T C26447T TTA27698- T28912C ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_479990
 2020-03-23 2020-07-01
 Japan hCoV-19/Japan/PG-0315/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C241T C313T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480000
 2020-03-23 2020-07-01
 Japan hCoV-19/Japan/PG-0325/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C3037T C14408T G16221T C17439T A17829T A23403G A26530G TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_480017
 2020-03-23 2020-07-01
 Japan hCoV-19/Japan/PG-0345/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480226
 2020-03-23 2020-07-01
 Japan hCoV-19/Japan/PG-0198/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A652G C2061T -4149T C6312A G11083T C13730T A22742T C23929T C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480389 MT772556
 2020-03-23 2020-07-01
 United States SARS-CoV-2/human/USA/WI-UW-407/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481742
 2020-03-23 2020-07-03
 Canada hCoV-19/Canada/NB_243/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11851T C14408T A23403G G25429T ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_482313
 2020-03-23 2020-07-03
 United States hCoV-19/USA/OR-PROV-030/2020
 A187G C241T C1616T C3037T C14408T A23403G

EPI_ISL_482328
 2020-03-23 2020-07-03
 United States hCoV-19/USA/OR-PROV-046/2020
 A187G C241T C1616T C3037T C14408T A23403G

EPI_ISL_482329
 2020-03-23 2020-07-03
 United States hCoV-19/USA/OR-PROV-048/2020
 A2480G C2558T G11083T C14805T G26144T C27012T

EPI_ISL_482331
 2020-03-23 2020-07-03
 United States hCoV-19/USA/OR-PROV-051/2020
 A2550G G11083T C14805T G26144T

EPI_ISL_482449
 2020-03-23 2020-07-03
 United States hCoV-19/USA/OR-PROV-207/2020
 C8782T C17747T A17858G C18060T T28144C C29769T

EPI_ISL_482467
 2020-03-23 2020-07-03
 United States hCoV-19/USA/OR-PROV-232/2020
 A187G C241T C1616T C3037T C14408T A23403G C25688T G29737T

EPI_ISL_482480
 2020-03-23 2020-07-03
 Canada hCoV-19/Canada/MB_75/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C1616T C3037T C14408T A23403G ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_482745 MT705206
 2020-03-23 2020-07-04
 Netherlands SARS-CoV-2/human/NLD/Leiden-0008/2020
 ATTAA1- C241T C3037T C5467Y C12846T C14408T C18928Y A23403G

EPI_ISL_483008
 2020-03-23 2020-07-06
 United States hCoV-19/USA/MN-MDH-1287/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G24368T G25563T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_483009
 2020-03-23 2020-07-06
 United States hCoV-19/USA/MN-MDH-1288/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- A38G C241T C1059T C3037T G11083T C14408T A23403G G25563T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_483065 MT710714
 2020-03-23 2020-07-06
 Brazil SARS-CoV-2/human/BRA/RJ01/2020
 ATTAAAGGTTTA1- C241T G598T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A AAAAAAAAAAAAA29891-

EPI_ISL_483080
 2020-03-23 2020-07-07
 Australia hCoV-19/Australia/SAP239/2020
 AT1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T

EPI_ISL_483089
 2020-03-23 2020-07-07
 Australia hCoV-19/Australia/SAP296/2020
 ATTA1- C241T C3037T C10078T C14408T C19170T G19509A A23403G GGG28881AAC

EPI_ISL_483113
 2020-03-23 2020-07-07
 Australia hCoV-19/Australia/SAP336/2020
 ATTAAAGGT1- C241T T2998A C3037T C14408T A23403G

EPI_ISL_483116
 2020-03-23 2020-07-07
 Australia hCoV-19/Australia/SAP339/2020
 ATT1- C4540T C8782T T9477A C13584T C14805T G25979T T28144C C28311T C28657T C28863T

EPI_ISL_483117
 2020-03-23 2020-07-07
 Australia hCoV-19/Australia/SAP340/2020
 ATT1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T

EPI_ISL_483119
 2020-03-23 2020-07-07
 Australia hCoV-19/Australia/SAP342/2020
 AT1- C241T G677A C3037T C14408T G14580T A23403G

EPI_ISL_483121
 2020-03-23 2020-07-07
 Australia hCoV-19/Australia/SAP345/2020
 AT1- C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_483126
 2020-03-23 2020-07-07
 Australia hCoV-19/Australia/SAP352/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- G1440A G2891A C28868T

EPI_ISL_483129
 2020-03-23 2020-07-07
 Australia hCoV-19/Australia/SAP357/2020
 A1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T

EPI_ISL_483723
 2020-03-23 2020-07-08
 Israel hCoV-19/Israel/n14277/2020
 C241T A404T C1059T -1290A A2514- C5365T G5558T -5818T A9373G A10536G T12157G G12355T G13390T C14408T C18481- G19849T A23403G G25563T A27646- A28811G

EPI_ISL_483971
 2020-03-23 2020-07-08
 United Kingdom hCoV-19/England/GSTT-265D509/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G11083T A11781G C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_483976
 2020-03-23 2020-07-08
 United Kingdom hCoV-19/England/GSTT-265D554/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G11083T C13009T C14805T G26144T A27388G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_483982
 2020-03-23 2020-07-08
 United Kingdom hCoV-19/England/GSTT-265D5BE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T C11074T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485975
 2020-03-23 2020-07-10
 United States hCoV-19/USA/WA-UW-2022/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C241T C1059T C3037T C13620T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_486435
 2020-03-23 2020-07-10
 Latvia hCoV-19/Latvia/051/2020
 C241T C3037T C14408T A23403G A28779G GGG28881AAC

EPI_ISL_487828
 2020-03-23 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5634/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488510
 2020-03-23 2020-07-14
 United Kingdom hCoV-19/England/NORT-284794/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G431A ATG1605- C1616T C20270T C24642G A29683T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488669
 2020-03-23 2020-07-14
 United Kingdom hCoV-19/England/NORT-2847FE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G C9223T G11083T C14805T T17247C T25202K G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488701
 2020-03-23 2020-07-14
 United Kingdom hCoV-19/England/NORT-2849AD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C673T C9962T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488753
 2020-03-23 2020-07-14
 United Kingdom hCoV-19/England/NORT-281C7A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488790
 2020-03-23 2020-07-14
 United Kingdom hCoV-19/England/NORT-281BE6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4327T G11083T G11365T C14805T G26144T G29528A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488802
 2020-03-23 2020-07-14
 United Kingdom hCoV-19/England/NORT-281C98/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488819
 2020-03-23 2020-07-14
 United Kingdom hCoV-19/England/NORT-281C01/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G G25507K C26882T G26951T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488830
 2020-03-23 2020-07-14
 United Kingdom hCoV-19/England/NORT-281B40/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3792T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489594
 2020-03-23 2020-07-14
 United Kingdom hCoV-19/Scotland/GCVR-16FEF5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17470T C26088T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_490978
 2020-03-23 2020-07-15
 United States hCoV-19/USA/AR-UW-MAYO83/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- AAC34TTT C241T C2416T C3037T C10712T C14408T A23403G G25563T C28890T AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_491004
 2020-03-23 2020-07-15
 United States hCoV-19/USA/VT-UW-MAYO49/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T C3037T C14408T A23403G G25563T G29688A AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_491456
 2020-03-23 2020-07-17
 Costa Rica hCoV-19/Costa Rica/INC-0045/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- C241T C1059T C3037T C5365T C14408T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_491910 MT776404
 2020-03-23 2020-07-17
 United States SARS-CoV-2/human/USA/VA_NIDDL_2677/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4231G C14408T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492186
 2020-03-23 2020-07-20
 United Kingdom hCoV-19/England/BRIS-132839/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A C10507T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492507
 2020-03-23 2020-07-20
 United Kingdom hCoV-19/England/BRIS-130CB7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T2032G A2480G C2558T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492508
 2020-03-23 2020-07-20
 United Kingdom hCoV-19/England/BRIS-130D2D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492523
 2020-03-23 2020-07-20
 United Kingdom hCoV-19/England/BRIS-130C4E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T C5849T G11083T C14805T C25583T G26062C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492591
 2020-03-23 2020-07-20
 United Kingdom hCoV-19/England/BRIS-130C3F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1426T A2480G C2558T G11083T G14710T C14805T G16852T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492615
 2020-03-23 2020-07-20
 United Kingdom hCoV-19/England/BRIS-130D0F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492642
 2020-03-23 2020-07-20
 United Kingdom hCoV-19/England/BRIS-130D1E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T433C C541T C1059T C3037T G11083T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492660
 2020-03-23 2020-07-20
 United Kingdom hCoV-19/England/BRIS-130D4B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492676
 2020-03-23 2020-07-20
 United Kingdom hCoV-19/England/BRIS-130CD5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C11471T C25342A C27942T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492683
 2020-03-23 2020-07-20
 United Kingdom hCoV-19/England/BRIS-130CE4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C541T C1059T C3037T G11083T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492727
 2020-03-23 2020-07-20
 United Kingdom hCoV-19/England/BRIS-130C11/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6582T C14408T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493203
 2020-03-23 2020-07-21
 Taiwan hCoV-19/Taiwan/NCKUH-009/2020
 AT1CCTTGAAACTGCTCAAAA A4T T490A C3177T C6040T C8782T C8950T G12478A T18736C T19713C C24034T T26729C G28077C T28144C C28896G C29451T A29700G AAAAAA29871GTGGCC AAA29878TGT A29882G -29886CATTTTACCC -A29890TTACAATCTAGTCAAGCGTGGCAACCGGGTGTTGCTATGCCTAATCTTTC AAA29896TGC A29902G

EPI_ISL_493204
 2020-03-23 2020-07-21
 Taiwan hCoV-19/Taiwan/NCKUH-010/2020
 ATTAAAGGTTT1- T490A C3177T C6040T C8782T C8950T G12478A T18736C T19713C C24034T T26729C G28077C T28144C C28896G C29451T A29700G AA29881TG -AA29884CTTTAACCTTGTGGCTTG AA29889GT A29892C -29895TTATGAACCTCT A29897C A29899C A29902G -29904CCATGTTGACATACTAGGACCTCTTTCTGCTCAAACTG

EPI_ISL_494617
 2020-03-23 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1461/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T C3037T C14408T C16762T A23403G G25563T

EPI_ISL_494714
 2020-03-23 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1649/2020
 AT1- C241T C3037T C14408T A20268G A23403G T24076C C27630T C28854T

EPI_ISL_494747
 2020-03-23 2020-07-22
 Taiwan hCoV-19/Taiwan/NCKUH-008/2020
 AT1GC A4T A2480G C2558T G11083T C14805T G26144T A27386- AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871C

EPI_ISL_495342 MT791878
 2020-03-23 2020-07-22
 United States SARS-CoV-2/human/USA/FL-BPHL-0436/2020
 ATTA1- C241T C1059T C3037T C14408T A23403G G25563T C26013T TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_495344 MT791880
 2020-03-23 2020-07-22
 United States SARS-CoV-2/human/USA/FL-BPHL-0438/2020
 ATTAAAGGT1- C241T C3037T G7641A C14408T C21575T A23403G GGG28881AAC AATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29818-

EPI_ISL_495360 MT791896
 2020-03-23 2020-07-22
 United States SARS-CoV-2/human/USA/FL-BPHL-0454/2020
 AT1- C241T C3037T C7267T C14408T G17259T C18877T A23403G G25563T C28308T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_495611
 2020-03-23 2020-07-23
 United States hCoV-19/USA/MN-MDH-1312/2020
 ATTAAAGGTTTA1- A2480G C2558T C10908T G11083T C14805T G26144T G28851C GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_495657 MT821783
 2020-03-23 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1482/2020
 ATTAAAGGTTT1- C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496920
 2020-03-23 2020-07-24
 United States hCoV-19/USA/MN-MDH-1334/2020
 AT1- C8782T C17747T A17858G C18060T T28144C GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_497744
 2020-03-23 2020-07-25
 Colombia hCoV-19/Colombia/85082/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498042
 2020-03-23 2020-07-26
 South Korea hCoV-19/Korea/KCDC2141/2020
 A1- T3A C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_498048
 2020-03-23 2020-07-26
 South Korea hCoV-19/Korea/KCDC2147/2020
 AT1- G11083T C12115T G13627T C14805T C15540T G26144T A28338G

EPI_ISL_498052
 2020-03-23 2020-07-26
 South Korea hCoV-19/Korea/KCDC2151/2020
 ATTA1- C241T C1059T C3037T C9214T C10889T C14408T A23403G G25563T C25821T

EPI_ISL_498053
 2020-03-23 2020-07-26
 South Korea hCoV-19/Korea/KCDC2152/2020
 AT1- C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_498153
 2020-03-23 2020-07-26
 Colombia hCoV-19/Colombia/87973/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498177
 2020-03-23 2020-07-27
 Vietnam hCoV-19/Vietnam/HCMC-05006/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C3037T C14408T C15324T A23403G GAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29711-

EPI_ISL_499306
 2020-03-23 2020-07-28
 United Kingdom hCoV-19/England/PORT-2D22B4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1461G C3037T C5730T C14408T G19542T A23403G G24328A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_499307
 2020-03-23 2020-07-28
 United Kingdom hCoV-19/England/PORT-2D22C3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A C10507T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_499308
 2020-03-23 2020-07-28
 United Kingdom hCoV-19/England/PORT-2D22D2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C19170T G19509A A23403G G28077T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_500688
 2020-03-23 2020-07-29
 Australia hCoV-19/Australia/NSW2249/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500689
 2020-03-23 2020-07-29
 Australia hCoV-19/Australia/NSW2250/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17747T A17858G C18060T A24694T T28144C CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500693
 2020-03-23 2020-07-29
 Australia hCoV-19/Australia/NSW2256/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C619T C1059T C3037T C14408T A14912G A23403G G25563T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_501167
 2020-03-23 2020-07-30
 United States hCoV-19/USA/TX-GCID-192000051B/2020
 ATTAAAGGTTTA1- TA13CC C16A T490A C3177T C4320T C6040T C8782T C8950T C9438T G12478A T18736C C24034T T26729C G28077C T28144C C28896G C29451T A29700G ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_501178
 2020-03-23 2020-07-31
 Malaysia hCoV-19/Malaysia/0478/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C6312A T10966W C10969Y G11083T C13730T C15216Y C19524T C23929T C28311T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_501179
 2020-03-23 2020-07-31
 Malaysia hCoV-19/Malaysia/0784/2020
 ATTAAAGGTTTATACCTTCCC1- TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_501180
 2020-03-23 2020-07-31
 Malaysia hCoV-19/Malaysia/0931/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C6312A T7621C G11083T C13730T C23929T C25549T C28311T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_501563
 2020-03-23 2020-07-31
 United Kingdom hCoV-19/England/BRIS-130DA5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A11782G C14408T G22203T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501572
 2020-03-23 2020-07-31
 United Kingdom hCoV-19/England/BRIS-130D69/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G13926T C14408T C22792T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501596
 2020-03-23 2020-07-31
 United Kingdom hCoV-19/England/BRIS-130E48/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A A27669G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501599
 2020-03-23 2020-07-31
 United Kingdom hCoV-19/England/BRIS-130DE1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1802R C2416T C3037T C14408T C14786T G20578T C20762Y A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501607
 2020-03-23 2020-07-31
 United Kingdom hCoV-19/England/BRIS-130EFD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501626
 2020-03-23 2020-07-31
 United Kingdom hCoV-19/England/EKHU-260EF63/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6286T C14408T A23403G G27281T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501629
 2020-03-23 2020-07-31
 United Kingdom hCoV-19/England/EKHU-260EF72/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A C4668T A10304W C20480T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_506965
 2020-03-23 2020-08-02
 South Korea hCoV-19/Korea/KCDC2171/2020
 C241T C3037T C14408T A23403G C25350T C27610T

EPI_ISL_506966
 2020-03-23 2020-08-02
 South Korea hCoV-19/Korea/KCDC2172/2020
 ATTA1- C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_506967
 2020-03-23 2020-08-02
 South Korea hCoV-19/Korea/KCDC2173/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_506968
 2020-03-23 2020-08-02
 South Korea hCoV-19/Korea/KCDC2174/2020
 AT1- C241T C1059T C3037T C3253T C14408T C18060T C22388T A23403G G25563T

EPI_ISL_506969
 2020-03-23 2020-08-02
 South Korea hCoV-19/Korea/KCDC2175/2020
 C241T C832T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_506970
 2020-03-23 2020-08-02
 South Korea hCoV-19/Korea/KCDC2176/2020
 ATT1- C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_507014 MT820465
 2020-03-23 2020-07-30
 Saudi Arabia SARS-CoV-2/human/SAU/KAIMRC08/2020
 ATTAAAGGTTTATACCTTCC1- C241T C3037T A10786G C14408T C15720T A23403G GGG28881AAC A29382T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_507059
 2020-03-23 2020-08-03
 United Kingdom hCoV-19/England/LOND-124D169/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23403G A23534G C26534T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_507060
 2020-03-23 2020-08-03
 United Kingdom hCoV-19/England/LOND-124D178/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A20268G A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_507062
 2020-03-23 2020-08-03
 United Kingdom hCoV-19/England/LOND-124D1A5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23403G C26534T GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_507063
 2020-03-23 2020-08-03
 United Kingdom hCoV-19/England/LOND-124D1B4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T G21850T A23403G C26534T G28001T GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_507064
 2020-03-23 2020-08-03
 United Kingdom hCoV-19/England/LOND-124D1C3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G1440A G2891A CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_507065
 2020-03-23 2020-08-03
 United Kingdom hCoV-19/England/LOND-124D1D2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23403G C26534T GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_507066
 2020-03-23 2020-08-03
 United Kingdom hCoV-19/England/LOND-124D1E1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C20844T A23403G C26534T C27503A GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_507067
 2020-03-23 2020-08-03
 United Kingdom hCoV-19/England/LOND-124D1F0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C207T ATG1605- C8917T C17898T C19011T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_507068
 2020-03-23 2020-08-03
 United Kingdom hCoV-19/England/LOND-124D20C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- A1515G G11083T C14805T T17247C G26144T T26318C G28979T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_507069
 2020-03-23 2020-08-03
 United Kingdom hCoV-19/England/LOND-124D21B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C19694T A23403G C26534T GGG28881AAC CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_507137
 2020-03-23 2020-08-03
 United Kingdom hCoV-19/England/PORT-2D225A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1457T A2480G C2558T G11083T C14805T G26144T C26340T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507139
 2020-03-23 2020-08-03
 United Kingdom hCoV-19/England/PORT-2D2296/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1457T A2480G C2558T C9360T G11083T C14805T G26144T C26340T G28851A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507140
 2020-03-23 2020-08-03
 United Kingdom hCoV-19/England/PORT-2D22A5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16289T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507700
 2020-03-23 2020-08-03
 United States hCoV-19/USA/MI-MDHHS-SC21446/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507974
 2020-03-23 2020-08-03
 United States hCoV-19/USA/MN-MDH-1387/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C3037T C14408T A23403G G25563T TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_508787 MT834631
 2020-03-23 2020-08-04
 United States SARS-CoV-2/human/USA/FL-BPHL-0583/2020
 ATTAAAGGT1- C241T C1059T C3037T G3692T C11916T C14408T A23403G G25563T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_508800 MT834644
 2020-03-23 2020-08-04
 United States SARS-CoV-2/human/USA/FL-BPHL-0596/2020
 AT1- C241T C1059T C3037T C14408T A23403G G25563T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_508802 MT834646
 2020-03-23 2020-08-04
 United States SARS-CoV-2/human/USA/FL-BPHL-0598/2020
 ATTA1- A2480G C2558T A4912C G11083T C14805T C17010A C21575T G26144T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_508952
 2020-03-23 2020-08-04
 France hCoV-19/France/ARA12638/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCT1- C241T C1059T C3037T C14408T A23403G G25563T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_508953
 2020-03-23 2020-08-04
 France hCoV-19/France/ARA12742/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCT1- C241T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_509007
 2020-03-23 2020-08-04
 France hCoV-19/France/ARA1276/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C3037T C14408T C21017T A23403G G23429T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_509008
 2020-03-23 2020-08-04
 France hCoV-19/France/ARA12740/2020
 ATTAAAGGTTTATACCTT1- C241T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_509434 MT827202
 2020-03-23 2020-07-30
 Brazil SARS-CoV-2/human/BRA/RJ-DCVN1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- C241T G598T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A A29897C AA29902-

EPI_ISL_509751 MT846455
 2020-03-23 2020-08-05
 United States SARS-CoV-2/human/USA/FL-BPHL-0693/2020
 ATTA1- C241T C1059T C1457T C3037T C10851T C14408T A23403G C25275T G25563T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_510923
 2020-03-23 2020-08-07
 Portugal hCoV-19/Portugal/PT0664/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C7604T C14408T A20268G T21886C A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511009
 2020-03-23 2020-08-07
 Portugal hCoV-19/Portugal/PT0750/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T G4162T C14408T A23403G A26530G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511011
 2020-03-23 2020-08-07
 Portugal hCoV-19/Portugal/PT0752/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3738T G4162T C14408T C16042T A23403G A26530G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511012
 2020-03-23 2020-08-07
 Portugal hCoV-19/Portugal/PT0753/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTC1- C241T C3037T G4162T C14408T A23403G A26530G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511014
 2020-03-23 2020-08-07
 Portugal hCoV-19/Portugal/PT0755/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T G4162T C14408T A23403G A26530G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511016
 2020-03-23 2020-08-07
 Portugal hCoV-19/Portugal/PT0757/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C2416T C3037T G8371T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511186
 2020-03-23 2020-08-07
 Portugal hCoV-19/Portugal/PT0929/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511238
 2020-03-23 2020-08-07
 Portugal hCoV-19/Portugal/PT1277/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C11674T C14408T A23403G G25273T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511239
 2020-03-23 2020-08-07
 Portugal hCoV-19/Portugal/PT1278/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- A2480G C2558T G11083T C14805T T21571C G26144T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511241
 2020-03-23 2020-08-07
 Portugal hCoV-19/Portugal/PT1280/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T C16733T C19152T C21621T A23403G A26530G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511242
 2020-03-23 2020-08-07
 Portugal hCoV-19/Portugal/PT1281/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G A28779G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511243
 2020-03-23 2020-08-07
 Portugal hCoV-19/Portugal/PT1282/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G A26927G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511367
 2020-03-23 2020-08-07
 Portugal hCoV-19/Portugal/PT1408/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3924T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511483
 2020-03-23 2020-08-08
 Portugal hCoV-19/Portugal/PT0659a/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C3140T C14408T A23403G G24077T C28512T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511536
 2020-03-23 2020-08-08
 Portugal hCoV-19/Portugal/PT0988/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511537
 2020-03-23 2020-08-08
 Portugal hCoV-19/Portugal/PT0989/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511539
 2020-03-23 2020-08-08
 Portugal hCoV-19/Portugal/PT0991/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G G26792T C26892T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511569
 2020-03-23 2020-08-08
 Portugal hCoV-19/Portugal/PT1022/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3140T C14408T A23403G C23601T G24077T C28512T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511571
 2020-03-23 2020-08-08
 Portugal hCoV-19/Portugal/PT1024/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G G25650T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511721
 2020-03-23 2020-08-08
 Portugal hCoV-19/Portugal/PT1175/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T G13348T C14408T A20268G A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511722
 2020-03-23 2020-08-08
 Portugal hCoV-19/Portugal/PT1176/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G G25593T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511897
 2020-03-23 2020-08-10
 Vietnam hCoV-19/Vietnam/VNHN_1863/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C2558T G11083T A13922T C14805T G26144T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_512507
 2020-03-23 2020-08-11
 United Kingdom hCoV-19/Wales/PHWC-16975A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C6990T C14408T A23403G C29200T

EPI_ISL_513473 MT886347
 2020-03-23 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0062/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATC1- G204T C241T C1059T C3037T G8676T C14408T G17302T G23126T A23403G C23733A G25563T AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513481 MT886355
 2020-03-23 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0070/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATT1- C241T C1059T C3037T C14408T A23403G G25563T AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513482 MT886356
 2020-03-23 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0071/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATC1- C241T C3037T C14408T C18877T A23403G G25563T AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513508 MT886384
 2020-03-23 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0099/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAA1- C241T C1722T C3037T G11083T C14408T A23403G AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513509 MT886385
 2020-03-23 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0100/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAA1- C241T C3037T C14408T C17992A C18877T A23403G G25563T C25702T AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_514466
 2020-03-23 2020-08-17
 United Kingdom hCoV-19/England/PORT-2D176B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_514640 MT892987
 2020-03-23 2020-08-17
 United States SARS-CoV-2/human/USA/MN-MDH-1421/2020
 ATTAAAGGTTTA1- C241T AAGTCATTT686- C3037T C14408T A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_514641 MT892988
 2020-03-23 2020-08-17
 United States SARS-CoV-2/human/USA/MN-MDH-1422/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T C14408T A23403G C25810A GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_514642 MT892989
 2020-03-23 2020-08-17
 United States SARS-CoV-2/human/USA/MN-MDH-1423/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T C14408T A23403G C25810A GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_514661 MT893008
 2020-03-23 2020-08-17
 United States SARS-CoV-2/human/USA/MN-MDH-1442/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- G204T C241T C1059T C3037T G8676T C14408T G22442K A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_515322
 2020-03-23 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0039/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C8782T C17747T A17858G C18060T A24694T T28144C

EPI_ISL_515324
 2020-03-23 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0041/2020
 ATTA1- C241T C3037T C14408T C14786T C21233T A23403G GGG28881AAC

EPI_ISL_515325
 2020-03-23 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0042/2020
 A1- C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_515526
 2020-03-23 2020-08-19
 Brazil hCoV-19/Brazil/SP-602/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T C21575T A23403G G25088T GGG28881AAC TC29856CT TAG29859GTC GAATG29864AGTCA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_515541
 2020-03-23 2020-08-19
 Brazil hCoV-19/Brazil/SP-627/2020
 TTAAAGGTTTATACCTTCCCAGGT2- C241T C3037T C14408T A23403G G25088T GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857TC

EPI_ISL_515544
 2020-03-23 2020-08-19
 Brazil hCoV-19/Brazil/SP-629/2020
 TTAAAGGTTTATACCTTCCCAGGT2- T115C C241T C3037T C12053T C14408T A23403G G25088T GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857T

EPI_ISL_515897
 2020-03-23 2020-08-20
 United States hCoV-19/USA/CA-CDPH004/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C1059T C3037T C14408T A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_516308
 2020-03-23 2020-08-20
 United States hCoV-19/USA/MI-MDHHS-SC21581/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516311
 2020-03-23 2020-08-20
 United States hCoV-19/USA/MI-MDHHS-SC21584/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTC1- C241T C1059T C3037T A7255T C14408T C14790T C15037T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_517297
 2020-03-23 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A9968/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A2480G C2558T A4501G T10480C G11083T C14805T T26130C G26144T C27559T

EPI_ISL_517345
 2020-03-23 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A9C8D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_517359
 2020-03-23 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A9D8A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T G680A C3037T C14408T G15438T A20268G A23403G C27600Y TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_517366
 2020-03-23 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A9DF3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_517448
 2020-03-23 2020-08-24
 United Kingdom hCoV-19/England/LIVE-AA3E1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T C15237T A23403G G26398T GGG28881AAC

EPI_ISL_517449
 2020-03-23 2020-08-24
 United Kingdom hCoV-19/England/LIVE-AA3F0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_518823
 2020-03-23 2020-08-25
 Oman hCoV-19/Oman/RESP-20-4941/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T G10265A C14408T C16293T A23403G GGG28881AAC -29851T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_518860 MT919999
 2020-03-23 2020-08-25
 United States SARS-CoV-2/human/USA/MN-MDH-1466/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- T490A C3177T C8782T G14186T T18736C G18781A G19684T C24034T T26729C C27635T G28077C T28144C A29700G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_518863 MT920002
 2020-03-23 2020-08-25
 United States SARS-CoV-2/human/USA/MN-MDH-1469/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- T490A C3177T C8782T G14186T T18736C G18781A G19684T C24034T T26729C C27635T G28077C T28144C A29700G GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_518869 MT920008
 2020-03-23 2020-08-25
 United States SARS-CoV-2/human/USA/MN-MDH-1475/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- A7966G C8782T A17858G C18060T A22422G T28144C GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_518887 MT920027
 2020-03-23 2020-08-25
 United States SARS-CoV-2/human/USA/MN-MDH-1494/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C3037T C14408T A20268G A23403G GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_518888 MT920028
 2020-03-23 2020-08-25
 United States SARS-CoV-2/human/USA/MN-MDH-1495/2020
 ATTAAAGGTT1- C241T C379A C1059T G2687A C3037T G5194T C14408T A23403G G24332T G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_523290
 2020-03-23 2020-08-26
 Netherlands hCoV-19/Netherlands/LI-EMC-85/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T C26305T AGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29827-

EPI_ISL_525425
 2020-03-23 2020-08-29
 Oman hCoV-19/Oman/RESP-20-4943/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C3037T G10265A C14408T TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_525626
 2020-03-23 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-26730-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- T490A C3177T C8782T T18736C G19684T C24034T T26729C C27635T C28006T G28077C T28144C A29700G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_525627
 2020-03-23 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-27452-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C2416T C3037T C3168T C14408T A23403G G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_525629
 2020-03-23 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-27938-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C1917T C3037T C7768T C14408T A19892C G20005A A23403G G25563T TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_527035
 2020-03-23 2020-09-03
 Australia hCoV-19/Australia/NSW2519/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T G14656C C17747T A17858G C18060T A24694T T28144C CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_527858
 2020-03-23 2020-09-05
 Brazil hCoV-19/Brazil/SP-279/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C337T C3037T C14408T A23403G T27299C GGG28881AAC G29000T T29148C GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_527874
 2020-03-23 2020-09-05
 Nigeria hCoV-19/Nigeria/ED02-CV156/2020
 ATTAAA1- A2480G C2558T G11083T C14805T G26144T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_528340
 2020-03-23 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42202970/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C3037T C14408T C15324T A23403G CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_528341
 2020-03-23 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42203020/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T T3011C C3037T C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528343
 2020-03-23 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42203098/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C14408T C15324T A23403G TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_528344
 2020-03-23 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42203106/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C14408T C15324T A23403G TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_528345
 2020-03-23 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42203155/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C5979T C14408T C15324T A23403G TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_528347
 2020-03-23 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42203196/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C2773T C3037T C14408T C18348T A23403G G24236T G29737T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_528348
 2020-03-23 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42203282/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T T19839C A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528349
 2020-03-23 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42203345/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G6404T C8208T G13723T C14408T C15324T C19145T A23403G C29362T AAAAAAAAAAAAA29891-

EPI_ISL_528350
 2020-03-23 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42203355/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T A3538G C14183T C14408T C15324T G22708C A23403G ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_528351
 2020-03-23 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42203366/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G G28690T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528354
 2020-03-23 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42203381/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A263G C1191T C3037T C14408T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528359
 2020-03-23 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42203579/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1856G C3037T C14408T A23403G C27046T GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_528360
 2020-03-23 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42203612/2020
 ATTAAAGGTTTA1- C241T C3037T C12676T C14408T C15324T G22035A A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528362
 2020-03-23 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42203645/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T A3078T C14408T C15324T A18425C A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528363
 2020-03-23 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42203656/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- A187G C241T C1568T C3037T C14408T A23403G TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_528364
 2020-03-23 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42203665/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- A187G C241T C3037T C14408T A23403G ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_528365
 2020-03-23 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42203696/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G4285A C14408T C15324T A23403G ATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29850-

EPI_ISL_528366
 2020-03-23 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42203703/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G6404T C8208T G13723T C14408T C15324T C19145T A23403G C29362T TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_528367
 2020-03-23 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42203738/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C643T C3037T C3787T C11518T C14408T C15324T C16726T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528368
 2020-03-23 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42203765/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C13138G C14408T C15324T A23403G ATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29850-

EPI_ISL_528369
 2020-03-23 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42203802/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T C20594T A23403G TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_528370
 2020-03-23 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42203813/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T G6404T C8208T G13723T C14408T C15324T C19145T A23403G C29362T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_528371
 2020-03-23 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42204170/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C2933T C3037T C14408T C15324T A23403G ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_528373
 2020-03-23 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42204989/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T G6352T C14408T C15324T C18788T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528381
 2020-03-23 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-65238783/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25563T C26607T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528927
 2020-03-23 2020-09-09
 Italy hCoV-19/Italy/ABR-IZSGC-TE6202/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATC1- C241T C3037T C14408Y A23403G GGG28881AAC AGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29763-

EPI_ISL_528928
 2020-03-23 2020-09-09
 Italy hCoV-19/Italy/ABR-IZSGC-TE6218/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATC1- C241T C3037T C14408Y A23403G GGG28881AAC TGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29785-

EPI_ISL_529218
 2020-03-23 2020-09-10
 United Kingdom hCoV-19/England/BIRM-61AC3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- A1904G C5826T C6026T C8090T C10789T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530044
 2020-03-23 2020-09-10
 Spain hCoV-19/Spain/MD-LP40/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T14313C C14408T A20268G A23403G ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_530263
 2020-03-23 2020-09-11
 Australia hCoV-19/Australia/QLD983/2020/P1
 ATTA1- C241T C619T C1059T C3037T C14408T A14912G A23403G G25563T

EPI_ISL_534835
 2020-03-23 2020-09-14
 United Kingdom hCoV-19/England/OXON-B3075/2020
 C241T C3037T C14408T C20740A C22986T A23403G GGG28881AAC

EPI_ISL_534839
 2020-03-23 2020-09-14
 United Kingdom hCoV-19/England/OXON-B3145/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTT1- C241T C3037T C14408T A23403G GGG28881AAC G29868R A29872W A29874M A29877M A29880M AAAAAAAAAAAAAAAAAA29886-

EPI_ISL_534872
 2020-03-23 2020-09-14
 United Kingdom hCoV-19/England/OXON-B35EF/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_534903
 2020-03-23 2020-09-14
 United Kingdom hCoV-19/England/OXON-B3B47/2020
 C241T C3037T C14408T G22592T A23403G GGG28881AAC AAAAAAAAAAAAAAA29889-

EPI_ISL_534910
 2020-03-23 2020-09-14
 United Kingdom hCoV-19/England/OXON-B3D50/2020
 T13C A2410C G11083T C14805T C18086T G25691T G26144T G28842T A29898R

EPI_ISL_534925
 2020-03-23 2020-09-14
 United Kingdom hCoV-19/England/OXON-B4038/2020
 C241T C3037T C9561T C14408T A23403G GGG28881AAC AAA29881MMM AA29889WM AAAAAAAA29896-

EPI_ISL_534947
 2020-03-23 2020-09-14
 United Kingdom hCoV-19/England/OXON-B434E/2020
 C241T C3037T C14408T T19839C A23403G C25731T C26681T GGG28881AAC

EPI_ISL_534982
 2020-03-23 2020-09-14
 United Kingdom hCoV-19/England/OXON-B491F/2020
 C241T C3037T C14408T C15540T A23403G GGG28881AAC ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_534983
 2020-03-23 2020-09-14
 United Kingdom hCoV-19/England/OXON-B492E/2020
 C241T C2455T C3037T A10972C C14408T A23403G G25429T C28253T C29730T

EPI_ISL_534985
 2020-03-23 2020-09-14
 United Kingdom hCoV-19/England/OXON-B49D3/2020
 ATTAAAGGTTTATACCTTC1- C241T C2416T C3037T C14408T A23403G G25563T A29898W AAAA29900-

EPI_ISL_535007
 2020-03-23 2020-09-14
 United Kingdom hCoV-19/England/OXON-B4D04/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_535996
 2020-03-23 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00232810/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C3037T CC14407TT C15324T A23403G C25433T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_536000
 2020-03-23 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00232917/2020
 ATTAAAGGT1- C241T C3037T C14408T C15324T A23403G C25433T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_536001
 2020-03-23 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00232925/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C3037T CC14407TT C15324T A23403G C25433T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_536004
 2020-03-23 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00232952/2020
 ATTAAA1- T10W T13W C241T C3037T C14408T C23191T A23403G C27046T GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_536013
 2020-03-23 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00233253/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1404T C3037T C14408T G15732T T19143C A20268G A23403G TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_536017
 2020-03-23 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00233333/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C1912T C3037T C14408T A23403G G25563T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_536018
 2020-03-23 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00233340/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C3037T C11916T C14408T A23403G G25563T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_536020
 2020-03-23 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00233357/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C313T C3037T C5575Y C14408T A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_536021
 2020-03-23 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00233380/2020
 ATTAAA1- A187G C241T C1616T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_536022
 2020-03-23 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00233398/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C2416T C3037T C5055T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_536023
 2020-03-23 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00233422/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C313T C3037T C14408T C21997Y A23403G C25904T GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_536024
 2020-03-23 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00233493/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T A2015R C3037T C11916T A13711R C14408T C18998T A23403G G25563T G29540A CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_536025
 2020-03-23 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00233496/2020
 ATTAAA1- C241T C1059T C3037T C14408T A23403G G25563T T27901Y AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_536028
 2020-03-23 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00233567/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T C14408T C18877T A23403G G25563T TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_536029
 2020-03-23 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00233585/2020
 ATTAAAGGTTTATACCTTCCCA1- G204T C241T C3037T C14408T C15324T A23403G TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_536031
 2020-03-23 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00233661/2020
 ATTAAA1- C241T C3037T C14408T T19381Y A20268G A23403G C28854T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_536032
 2020-03-23 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00233681/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C3037T C14408T C15324T A23403G C25433T A26487G TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_536033
 2020-03-23 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00233683/2020
 ATTAA1- C241T C3037T CC14407TT C15324T A23403G C25433T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_536034
 2020-03-23 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00233695/2020
 ATTAAA1- C241T C3037T C14408T G16117K A20268G A23403G C28854T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_536035
 2020-03-23 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00233702/2020
 ATTAAA1- C241T C1059T C3037T G8828A C12241T C14408T G19009T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_536037
 2020-03-23 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00233721/2020
 ATTAAA1- C241T C3037T CC14407TT C15324T C21110T A23403G C25433T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_536038
 2020-03-23 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00233734/2020
 ATTAAA1- C241T C3037T C7564T C14408T A20268G A23403G C23635T G29734C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_536039
 2020-03-23 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00233793/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G G28690T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_536040
 2020-03-23 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00233812/2020
 C241T C1059T C3037T C14408T A17910R G20487K A23403G G25217T G25563T C29835T A29865R AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_536041
 2020-03-23 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00233835/2020
 ATT1- C241T C3037T C3176T C14408T A23403G GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_536042
 2020-03-23 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00233849/2020
 ATTAAA1- C241T C1059T C3037T T3952C C5183T C14408T A23403G G25563T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_536044
 2020-03-23 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00233867/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C3037T C14408T C23191T A23403G C27046T GGG28881AAC GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_536045
 2020-03-23 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00233870/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T C14408T C16877T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_536047
 2020-03-23 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00234248/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- A2480G C2558T G11083T C14805T G26144T G29742T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_536049
 2020-03-23 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00234287/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C8782T C17747T A17858G C18060T C18657T T28144C TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_536050
 2020-03-23 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00234302/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C8208T G9267A T9667C C14408T A23403G G25947T G28361A GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_536051
 2020-03-23 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00234333/2020
 ATTAAAGGTTTATACC1- C241T C3037T C3373A G10201T C14408T A23403G GGG28881AAC C29520T C29585T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_536052
 2020-03-23 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00234347/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C8208T G9267A T9667C C14408T A23403G G25947T G28361A GGG28881AAC TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_536054
 2020-03-23 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00234442/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C8208T G9267A T9667C C14408T A23403G G25947T G28361A GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_536055
 2020-03-23 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00234460/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C3037T C14408T A23403G G25563T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_536056
 2020-03-23 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00234533/2020
 ATTAAAGGTTTATACC1- C36S C241T C3037T C14408T C15324T A23403G GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_536058
 2020-03-23 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00234540/2020
 ATTAAAGGTTTA1- C4475Y C8782T C16293T C20178T T28144C G28878A G29742A TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_536059
 2020-03-23 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00234574/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C8782T C17747T A17858G C18060T C18657T T28144C GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_536062
 2020-03-23 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00234611/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C14408T C18687T A20268G A23403G GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_536063
 2020-03-23 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00234621/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C313T C3037T C14408T A23403G C25904T GGG28881AAC TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_536064
 2020-03-23 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00234627/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C1059T C3037T G3335A C14408T C21789Y A23403G G25563T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_536065
 2020-03-23 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00234639/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T C8208T G9267A T9667C C14408T A23403G G25947T G28361A GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_536066
 2020-03-23 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00234652/2020
 ATTAAAGGT1- C241T C3037T C5730T C8208T G9267A T9667C C14408T A23403G G25947T G28361A GGG28881AAC GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_536067
 2020-03-23 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00234655/2020
 ATTAAAGGT1- C241T C1059T G1148T C3037T C14408T C21575T A23403G G25217T G25563T C26150T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_536068
 2020-03-23 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00234676/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C14408T A23403G TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_536069
 2020-03-23 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00234776/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T T3670C C14408T C18877T A23403G G25563T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_536071
 2020-03-23 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00234851/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C3037T C14408T C18877T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_536076
 2020-03-23 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00234877/2020
 A1- C241T C3037T C8208T G9267A T9667C C14408T A23403G G25947T G28361A GGG28881AAC AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_536086
 2020-03-23 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00235107/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C3037T C5730T C8208T G9267A T9667C C14408T A23403G G25278K G25947T G28361A GGG28881AAC GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_536108
 2020-03-23 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00235800/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T G2333T C3037T C14408T C19170T G19509A A23403G GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_536111
 2020-03-23 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00235849/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C8782T C17747T A17858G C18060T G25660T T28144C CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_536112
 2020-03-23 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00235855/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C8782T C17747T A17858G C18060T G23285T G25660T T28144C GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_536115
 2020-03-23 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00235965/2020
 ATTAAAGGTTT1- C241T C3037T A5097M G10265A C14408T A23403G GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_537492
 2020-03-23 2020-09-16
 United States hCoV-19/USA/CA-UCLA-152/2020
 ATTAAAGGTTT1- C241T C3037T C3923T C14408T C19813T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_538452
 2020-03-23 2020-09-17
 Singapore hCoV-19/Singapore/921/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A895G G1172A C2942T G4390T C8782T C9598T G20134T G24047A T28144C A29412G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538765
 2020-03-23 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9EA3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A T13216G C14408T C18486T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539058
 2020-03-23 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8B8F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C2558T G11083T C14805T G26144T G28851T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539148
 2020-03-23 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8D6B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A C1959T G2891A C10507T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539215
 2020-03-23 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8439/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539493
 2020-03-23 2020-09-18
 Czech Republic hCoV-19/Czech Republic/NRL-5555/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C541T C1059T C3037T G11083T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540986
 2020-03-23 2020-09-22
 Peru hCoV-19/Peru/LAL-UPCH-0109/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T C3037T C7869T C14408T G17338T A23403G C24621T GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_547465
 2020-03-23 2020-09-24
 Netherlands hCoV-19/Netherlands/GE-RIVM-10124/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11596T C14408T C15342T A23403G A26530G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547473
 2020-03-23 2020-09-24
 Netherlands hCoV-19/Netherlands/LI-RIVM-10119/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A C4655T G8422A C9246T A9484G C29546A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547515
 2020-03-23 2020-09-24
 Netherlands hCoV-19/Netherlands/UT-RIVM-10054/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T1606C C12068T C12621T G17523T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547532
 2020-03-23 2020-09-24
 Netherlands hCoV-19/Netherlands/UT-RIVM-10123/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G24077T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_548247
 2020-03-23 2020-09-25
 Sweden hCoV-19/Sweden/20-08331/2020
 C241T AAGTCATTT686- C3037T C14408T A23403G C25350T

EPI_ISL_548346
 2020-03-23 2020-09-26
 United States hCoV-19/USA/CA-CZB-3640/2020
 C241T G545T C3037T C14408T A23403G TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_548355
 2020-03-23 2020-09-26
 United States hCoV-19/USA/CA-CZB-3641/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G545T C3037T C14408T A23403G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_548983
 2020-03-23 2020-09-28
 Singapore hCoV-19/Singapore/975/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T G12514T C14408T G15380T A23403G G25563T C29503Y AAAAAAAAAAAA29892-

EPI_ISL_548994
 2020-03-23 2020-09-28
 Singapore hCoV-19/Singapore/986/2020
 ATTAAAGGTTTATACCTTCCC1- C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_548997
 2020-03-23 2020-09-28
 Singapore hCoV-19/Singapore/989/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T A5490R C14408T A18562C A23403G GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_549004
 2020-03-23 2020-09-28
 Singapore hCoV-19/Singapore/996/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C6310A C6312A A8887R G11083T C13730T C19524T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_560415
 2020-03-23 2020-09-29
 Canada hCoV-19/Canada/QC-LSPQ-L00234169/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T GTCATGTTAT510- G520K AAGTCATTT686- C3037T G6374A C14408T A20268G G20730T A23403G G24368T C25658Y A26667G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_560592
 2020-03-23 2020-09-29
 France hCoV-19/France/HDF8233/2020
 ATTAAAGGTTTATACCTTCC1- C28T C241T C2416T C3037T C14408T A23403G G25563T T28105C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_568681
 2020-03-23 2020-10-02
 United States hCoV-19/USA/FL-BPHL-1583/2020
 ATTA1- C241T C1059T C3037T C14408T A23403G G25563T C27619T GTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29810-

MT345816
 2020-03-23 2020-04-14
 United States SARS-CoV-2/human/USA/UNKNOWN-UW-2139/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C1059T C3037T T3312C C14408T A23403G G25563T AAAAAAA29897-

MT380734
 2020-03-23 2020-04-24
 United States SARS-CoV-2/human/USA/LA-CDC-1894/2020
 C241T C1059T C3037T C10188T C14408T A23403G T24982C G25563T C27964T G29543T AAAAAAAAAAAAAAAAAAAAA29883-

MT459840
 2020-03-23 2020-05-11
 Greece SARS-CoV-2/human/GRC/38_36178/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T G5230T C14408T A20268G A23403G G28975T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

MT459842
 2020-03-23 2020-05-11
 Greece SARS-CoV-2/human/GRC/44_36073/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

MT459843
 2020-03-23 2020-05-11
 Greece SARS-CoV-2/human/GRC/46_36230/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

MT459844
 2020-03-23 2020-05-11
 Greece SARS-CoV-2/human/GRC/47_36060/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- A2480G C2558T G11083T C14805T G18907T C20402T G26144T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

MT477842
 2020-03-23 2020-05-14
 United States SARS-CoV-2/human/USA/AK034/2020
 ATTAAAG1- C241T C1059T C3037T C14408T G15760A A23403G G25563T G26062T

MT477845
 2020-03-23 2020-05-14
 United States SARS-CoV-2/human/USA/AK041/2020
 ATTAAAGGTTTATA1- C241T C313T C3037T C14408T G19518T A23403G G28845T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

MT509493
 2020-03-23 2020-05-22
 United States SARS-CoV-2/human/USA/MD-HP00078/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G17808T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT627930
 2020-03-23 2020-06-16
 United States SARS-CoV-2/human/USA/WA-S602/2020
 ATTAAA1- C241T C1059T C3037T C11916T C14408T A23403G C24099T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

MT671811
 2020-03-23 2020-06-26
 United States SARS-CoV-2/human/USA/CA-CZB-1755/2020
 ATTAAAGGTTTATACC1- GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

MT671824
 2020-03-23 2020-06-26
 United States SARS-CoV-2/human/USA/CA-CZB-1770/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT675289
 2020-03-23 2020-06-26
 United States SARS-CoV-2/human/USA/COVID19-AK141/2020
 ATTAAAGGTTTATACCTTCC1- A4236G G11083T C14805T C18032A T25655C G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

MT675517
 2020-03-23 2020-06-26
 United States SARS-CoV-2/human/USA/COVID19-AK142/2020
 ATT1- C241T T833C C1059T C3037T C14408T G15913T A23403G G25563T C27964T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

MT706146
 2020-03-23 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-25/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G11083T C14805T C25046T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706154
 2020-03-23 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-33/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C8782T T18736C C24034T T26729C C27635T G28077C T28144C A29567C A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706176
 2020-03-23 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-55/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8818T A10995G G29711T T29804C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706179
 2020-03-23 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-58/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10188T C14408T A23403G T24982C G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706182
 2020-03-23 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-61/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T G16381A T17877C C20316T G25500T G26211T T28144C G28878A G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706200
 2020-03-23 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-79/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3429T C14408T A20268G A21137G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706314
 2020-03-23 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-186/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706315
 2020-03-23 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-187/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706317
 2020-03-23 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-189/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C8782T T18736C C24034T T26729C C27635T G28077C T28144C A29567C A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706318
 2020-03-23 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-190/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C21110T A23403G G25563T C27964T C28846T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706319
 2020-03-23 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-191/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T2116A A10070C G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706320
 2020-03-23 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-192/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706321
 2020-03-23 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-193/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706335
 2020-03-23 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-207/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T2116A G11083T G23518A G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT810519
 2020-03-23 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1649-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A20268G A23403G T24076C C27630T C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810835
 2020-03-23 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1461-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T C16762T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810922
 2020-03-23 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0184-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T A23403G C24064T G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810928
 2020-03-23 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0193-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C1887T C3037T C14408T A17615G A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810973
 2020-03-23 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0347-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T C16762T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

NMDC60013223
 2020-03-23 2020-06-01
 China hCoV-19/Guangzhou/ID057/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C5654T C14408T G16846T A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

NMDC60013262
 2020-03-23 2020-06-01
 China hCoV-19/Guangzhou/ID026/2020
 C6312A G11083T C13730T C23929T C28311T TG29867-A

EPI_ISL_418302
 2020-03-24 2020-03-24
 United Kingdom hCoV-19/England/SHEF-BFE9D/2020
 G11083T C20270T A29683T

EPI_ISL_418304
 2020-03-24 2020-03-24
 United Kingdom hCoV-19/England/SHEF-BFEBB/2020
 C11747T T24364G G29032A

EPI_ISL_418307
 2020-03-24 2020-03-24
 United Kingdom hCoV-19/England/SHEF-BFF03/2020
 A12556G C20270T T22391C A29683T

EPI_ISL_418313
 2020-03-24 2020-03-24
 United Kingdom hCoV-19/England/SHEF-BFF6D/2020
 C241T C3037T C14408T C15952T A23403G

EPI_ISL_418861 MT359866
 2020-03-24 2020-03-31
 Spain SARS-CoV-2/human/ESP/VH198152683/2020
 ATTAAAGGTT1- C241T C313T C3037T C14408T A23403G A27302G GGG28881AAC

EPI_ISL_418891 MT263404
 2020-03-24 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW324/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- A4236G G11083T C14805T T25655C G26144T AAAAAA29898-

EPI_ISL_419259
 2020-03-24 2020-04-01
 Belgium hCoV-19/Belgium/UGent-11/2020
 T514C ATG1605- C17410T T18723C

EPI_ISL_419265
 2020-03-24 2020-04-01
 Belgium hCoV-19/Belgium/UGent-6/2020
 C241T C3037T A13947T C14408T A23403G GGG28881AAC

EPI_ISL_419266
 2020-03-24 2020-04-01
 Belgium hCoV-19/Belgium/UGent-4/2020
 C241T C3037T C14408T C19269T T19839C A23403G C24099T GGG28881AAC

EPI_ISL_419674
 2020-03-24 2020-04-03
 Austria hCoV-19/Austria/CeMM0021/2020
 C241T C1059T C3037T C14408T A23403G G25563T TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_420004 MT451205
 2020-03-24 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC313/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G660K G1018K C1076T G1397A G2036K C3551Y G5378K G5399T G5425K C5427Y G7017K G8790K G9141K G9249K G10986K G11083T G11535K G12041K G14277K G16068K G16508K G24933K C27964T T28688C G29742T

EPI_ISL_420005 MT451206
 2020-03-24 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC314/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- A404W C1076T G1397A G11083T C27964T G29737C

EPI_ISL_420006 MT451207
 2020-03-24 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC315/2020
 A1- C241T C3037T C14408T C16848T A23403G GGG28881AAC C29837T A29865R

EPI_ISL_420007 MT451208
 2020-03-24 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC316/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G374A C8782T C17747T A17858G C18060T T28144C C29353T

EPI_ISL_420008 MT451209
 2020-03-24 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC317/2020
 ATTA1- G374A C8782T C17747T A17858G C18060T T28144C

EPI_ISL_420009 MT451210
 2020-03-24 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC318/2020
 AT1- C241T C3037T T7438C C14408T A23403G C29353T

EPI_ISL_420010 MT451211
 2020-03-24 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC319/2020
 A1- C241T C3037T T7438C C14408T A23403G A26864G C29353T

EPI_ISL_420011 MT451212
 2020-03-24 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC320/2020
 ATTA1- C241T C3037T T7438C C14408T A23403G C29353T

EPI_ISL_420012 MT451213
 2020-03-24 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC321/2020
 ATTAA1- C241T C1059T C3037T C10851T C14408T A23403G G25563T

EPI_ISL_420013 MT451214
 2020-03-24 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC322/2020
 ATTA1- T380K A1515G T6079C C9223T G11083T A14224G C14805T T17247C G26144T

EPI_ISL_420014 MT451215
 2020-03-24 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC323/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T T7438C C14408T A23403G A26864R C29353T

EPI_ISL_420015 MT451216
 2020-03-24 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC324/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C3037T C14408T A23403G A25449G GGG28881AAC

EPI_ISL_420016 MT451217
 2020-03-24 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC325/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C3096T G11083T G13627T C14805T C15540T G26144T A28338G G29212T

EPI_ISL_420017 MT451218
 2020-03-24 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC326/2020
 A1- C3096T G11083T G13627T C14805T C15540T G26144T A28338G G29212T

EPI_ISL_420171
 2020-03-24 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C08B9/2020
 C241T C3037T C14408T C18713T A23403G GGG28881AAC

EPI_ISL_420173
 2020-03-24 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C08F5/2020
 C241T C3037T C14408T C18713T A23403G GGG28881AAC

EPI_ISL_420252
 2020-03-24 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C01AF/2020
 C2558T G11083T C14805T A25822G G26144T C29167T

EPI_ISL_420259
 2020-03-24 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C0172/2020
 C6027T G11083T C14805T T18771C G26144T

EPI_ISL_420260
 2020-03-24 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C0181/2020
 C241T C3037T C7504T C14408T A20268G A23403G

EPI_ISL_420262
 2020-03-24 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C0752/2020
 C241T C3037T C4002T G10097A G11083T C13536T C14408T A23403G C23731T C27513T GGG28881AAC

EPI_ISL_420263
 2020-03-24 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C04E2/2020
 A2480G C2558T C8078T C8917T G11083T C14805T G26144T

EPI_ISL_420295
 2020-03-24 2020-04-06
 Slovenia hCoV-19/Slovenia/12304/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C2113T C3037T C14408T TTA21991- A23403G GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_420374
 2020-03-24 2020-04-06
 Belgium hCoV-19/Belgium/DV-0324117/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G11083T C14805T G24095T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420375
 2020-03-24 2020-04-06
 Belgium hCoV-19/Belgium/VHV-0324118/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420376
 2020-03-24 2020-04-06
 Belgium hCoV-19/Belgium/CF-0324119/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T G29291A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420377
 2020-03-24 2020-04-06
 Belgium hCoV-19/Belgium/SEM-0324120/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3350G C6145T A11839G C14408T T19839C A23403G G28077T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420378
 2020-03-24 2020-04-06
 Belgium hCoV-19/Belgium/MSE-0324121/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1912T C25047T C26022T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420381
 2020-03-24 2020-04-06
 Belgium hCoV-19/Belgium/FFJ-0324124/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2488T C3037T G11083T C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420382
 2020-03-24 2020-04-06
 Belgium hCoV-19/Belgium/UNJP-0324125/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G A28765G T29244C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420383
 2020-03-24 2020-04-06
 Belgium hCoV-19/Belgium/NJC-0324126/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C16192T A23403G G25563T G29291A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420387
 2020-03-24 2020-04-06
 Belgium hCoV-19/Belgium/MNL-0324130/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A3859G G5950T G11083T C14805T T17247C G26144T A29598G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420388
 2020-03-24 2020-04-06
 Belgium hCoV-19/Belgium/MSE-0324131/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T T12244C T13402G C13740T C14408T C16869T A23403G C27263T G27870A TG28026AC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_420389
 2020-03-24 2020-04-06
 Belgium hCoV-19/Belgium/GMJ-0324132/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G A28765G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420390
 2020-03-24 2020-04-06
 Belgium hCoV-19/Belgium/LV-0324133/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420391
 2020-03-24 2020-04-06
 Belgium hCoV-19/Belgium/MS-0324134/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4201T C14408T A23403G C26527T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420392
 2020-03-24 2020-04-06
 Belgium hCoV-19/Belgium/DME-0324135/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A3859G G11083T C14805T T17247C G26144T A29598G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420393
 2020-03-24 2020-04-06
 Belgium hCoV-19/Belgium/VWJM-0324136/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420395
 2020-03-24 2020-04-06
 Belgium hCoV-19/Belgium/RS-0324138/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G C28290T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420399
 2020-03-24 2020-04-06
 Belgium hCoV-19/Belgium/MAC-0324142/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T19839C A23403G G27112C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420401
 2020-03-24 2020-04-06
 Belgium hCoV-19/Belgium/PM-0324144/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T C14408T C15324T T20295C A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_420406
 2020-03-24 2020-04-06
 Belgium hCoV-19/Belgium/BEG-0324149/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T C14408T C15324T A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_420407
 2020-03-24 2020-04-06
 Belgium hCoV-19/Belgium/CK-0324150/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8394T C14408T C15277T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420408
 2020-03-24 2020-04-06
 Belgium hCoV-19/Belgium/HCM-0324151/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T C13536T C14408T G22988A A23403G C23731T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_420412
 2020-03-24 2020-04-06
 Belgium hCoV-19/Belgium/BJ-0324192/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T G2891A C4095T G13413C G13415C C14408T T24171G A28676C G29033T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_420417
 2020-03-24 2020-04-06
 Belgium hCoV-19/Belgium/BCM-0324160/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1471T C3037T C4320T C14408T A23403G G25563T C25688T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420418
 2020-03-24 2020-04-06
 Belgium hCoV-19/Belgium/NIM-0324161/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A11839G C14408T T19839C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420420
 2020-03-24 2020-04-06
 Belgium hCoV-19/Belgium/DCB-0324163/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G24794T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420421
 2020-03-24 2020-04-06
 Belgium hCoV-19/Belgium/ML-0324164/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A11839G C14408T T19839C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420424
 2020-03-24 2020-04-06
 Belgium hCoV-19/Belgium/CCM-0324167/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1142T C3037T C14408T C15324T A23403G C27434T A28765G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420425
 2020-03-24 2020-04-06
 Belgium hCoV-19/Belgium/RC-0324168/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C2094T C3037T T8022G T9283G C14408T C15654T A21651G T22515C A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_420426
 2020-03-24 2020-04-06
 Belgium hCoV-19/Belgium/NMA-0324169/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T11638C C14408T A23403G GGG28881AAC C29708T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420427
 2020-03-24 2020-04-06
 Belgium hCoV-19/Belgium/STM-0324170/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420429
 2020-03-24 2020-04-06
 Belgium hCoV-19/Belgium/NKMA-0324172/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6573T C8394T C14408T C15277T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420430
 2020-03-24 2020-04-06
 Belgium hCoV-19/Belgium/QL-0324173/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7420T C9170T C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420431
 2020-03-24 2020-04-06
 Belgium hCoV-19/Belgium/AGR-0324174/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14120T C14408T C15324T C20844A A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420433
 2020-03-24 2020-04-06
 Belgium hCoV-19/Belgium/DNS-0324176/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C14408T T19697C A23403G G26690T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420434
 2020-03-24 2020-04-06
 Belgium hCoV-19/Belgium/RHA-0324177/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G7829T C11355T C12085T C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420436
 2020-03-24 2020-04-06
 Belgium hCoV-19/Belgium/GLA-0324179/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6573T C8394T C14408T C15277T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420621
 2020-03-24 2020-04-06
 France hCoV-19/France/ARA1307/2020
 C241T C3037T C3170T C14408T A23403G G25563T C26464T C29250T C29732T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_420623
 2020-03-24 2020-04-06
 France hCoV-19/France/ARA13095/2020
 C241T C3037T T4684C C14408T C15324T T16342C C18312T A23403G G28202A AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_420624
 2020-03-24 2020-04-06
 France hCoV-19/France/ARA13160/2020
 C241T C3037T C14408T C15324T A15860G A23403G AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_420625
 2020-03-24 2020-04-06
 France hCoV-19/France/ARA1322/2020
 C241T C1059T C3037T C3787T C14408T A23403G C25553T G25563T G29751C AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_420636
 2020-03-24 2020-04-06
 United Kingdom hCoV-19/England/20136085404/2020
 A187G C241T C3037T C14408T A23403G

EPI_ISL_420876
 2020-03-24 2020-04-07
 Australia hCoV-19/Australia/VIC-CBA2/2020
 C241T C2416T C3037T G4510T C7765T C14408T G20578T A23403G G25563T G27670T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_420878
 2020-03-24 2020-04-07
 Australia hCoV-19/Australia/QLDID929/2020
 ATTAAA1- A2480G C2558T G11083T C14805T G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_421214
 2020-03-24 2020-04-07
 Belgium hCoV-19/Belgium/ULG-10047/2020
 C241T C3037T C14408T C15277T C15324T G18972T A23403G G25249T C25797T

EPI_ISL_421287
 2020-03-24 2020-04-07
 United States hCoV-19/USA/WI-UW-29/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G15760A A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421290
 2020-03-24 2020-04-07
 United States hCoV-19/USA/WI-UW-32/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11417T T14073C C14408T A23403G A23947G A27338G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421293
 2020-03-24 2020-04-07
 United States hCoV-19/USA/WI-UW-35/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11417T T14073C C14408T A23403G A23947G C24310T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421298
 2020-03-24 2020-04-07
 United States hCoV-19/USA/WI-UW-40/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11417T T14073C C14408T A23403G A23947G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421317
 2020-03-24 2020-04-07
 United States hCoV-19/USA/WI-UW-59/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C13019T C16457T C17747T A17858G C18060T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421321
 2020-03-24 2020-04-07
 United States hCoV-19/USA/WI-UW-63/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421322
 2020-03-24 2020-04-07
 United States hCoV-19/USA/WI-UW-64/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11417T T14073C C14408T A23403G A23947G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421324
 2020-03-24 2020-04-07
 United States hCoV-19/USA/WI-UW-66/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T G16381A T17877C C20316T G25500T T28144C G28878A G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421326
 2020-03-24 2020-04-07
 United States hCoV-19/USA/WI-UW-68/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421329
 2020-03-24 2020-04-07
 United States hCoV-19/USA/WI-UW-71/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T G16381A T17877C C20316T G25500T T28144C G28878A G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421331
 2020-03-24 2020-04-07
 United States hCoV-19/USA/WI-UW-73/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T G16381A T17877C C20316T G25500T T28144C G28878A G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421336
 2020-03-24 2020-04-07
 United States hCoV-19/USA/WI-UW-78/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A263G C1191T C3037T C14408T C20325T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421339
 2020-03-24 2020-04-07
 United States hCoV-19/USA/WI-UW-80/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3871T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421343
 2020-03-24 2020-04-07
 United States hCoV-19/USA/WI-UW-84/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C14408T T15366C C18481T A23403G G25563T G25687A C29296T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421496
 2020-03-24 2020-04-08
 Portugal hCoV-19/Portugal/PT0093/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G A27751T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_421497
 2020-03-24 2020-04-08
 Portugal hCoV-19/Portugal/PT0094/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G A27751T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_421498
 2020-03-24 2020-04-08
 Portugal hCoV-19/Portugal/PT0095/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G A27751T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_421499
 2020-03-24 2020-04-08
 Portugal hCoV-19/Portugal/PT0096/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_421768
 2020-03-24 2020-04-09
 United Kingdom hCoV-19/England/201360017/2020
 C241T C3037T T10738Y C14408T A23403G GGG28881AAC

EPI_ISL_422039
 2020-03-24 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-25779/2020
 G1440A G2891A C25669T G28851T

EPI_ISL_422045
 2020-03-24 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-25AF8/2020
 G11083T C14805T C23707T A25056G G26144T

EPI_ISL_422049
 2020-03-24 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-2575B/2020
 AT1- G1440A G2891A C25669T G28851T

EPI_ISL_422053
 2020-03-24 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-25ABC/2020
 G431A ATG1605- G16396T C20270T C28725T A29088G A29683T

EPI_ISL_422065
 2020-03-24 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-2566D/2020
 C241T C1648T C3037T C14408T A23403G

EPI_ISL_422066
 2020-03-24 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-2573D/2020
 AT1- G1440A G2891A C25669T G28851T

EPI_ISL_422067
 2020-03-24 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-25973/2020
 C241T C3037T C14408T C14741T A23403G

EPI_ISL_422071
 2020-03-24 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-257B5/2020
 ATTAAAGGTTTATACCTTCCCA1- A7479G C11074T G11083T C14805T T17247C C25572T G26144T C28887T

EPI_ISL_422073
 2020-03-24 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-260AA/2020
 ATTA1- C241T C3037T T7168C G11801A C14408T T19839C A23403G G25552T GGG28881AAC

EPI_ISL_422116
 2020-03-24 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-25B04/2020
 ATTAAAGG1- C875T ATG1605- C6255T A20637G

EPI_ISL_422727 LR877817
 2020-03-24 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_192/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T658C C3037T C14408T C18570T A23403G A24862G C28629T C29253T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422728 LR877818
 2020-03-24 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_193/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- C17410T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422730 LR877823
 2020-03-24 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_195/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422736 LR877975
 2020-03-24 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_201/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T T17247C G26144T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422747 LR877900
 2020-03-24 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_212/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2113T C3037T C7765T C14408T C17690T C18877T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422938 LR877888
 2020-03-24 2020-04-11
 Netherlands hCoV-19/Netherlands/ZuidHolland_70/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G12550A C14408T A20268G C20740A A23403G G26501T G29734C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422939 LR877889
 2020-03-24 2020-04-11
 Netherlands hCoV-19/Netherlands/ZuidHolland_71/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3047T C8818T C14408T A20268G A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_423042
 2020-03-24 2020-04-12
 Thailand hCoV-19/Thailand/Bangkok-0021/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C11916Y C14408T C14786T A23403G G25563T G28857A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_423045
 2020-03-24 2020-04-12
 United Kingdom hCoV-19/England/20134000804/2020
 A2480G C2558T G11083T C14805T G26144T T26301C

EPI_ISL_423065
 2020-03-24 2020-04-12
 United Kingdom hCoV-19/England/20134004904/2020
 C241T C3037T C14408T G21204T A23403G GGG28881AAC

EPI_ISL_423067
 2020-03-24 2020-04-12
 United Kingdom hCoV-19/England/20134005104/2020
 C228T G1397A G9479T A9514G G11083T C26533Y G26720C T28688C T28835C G29742T

EPI_ISL_423072
 2020-03-24 2020-04-12
 United Kingdom hCoV-19/England/20134006704/2020
 C241T C3037T C14408T A23403G C27679T GGG28881AAC

EPI_ISL_423073
 2020-03-24 2020-04-12
 United Kingdom hCoV-19/England/20134007004/2020
 C241T C3037T C14408T A23403G C26534Y GGG28881AAC

EPI_ISL_423074
 2020-03-24 2020-04-12
 United Kingdom hCoV-19/England/20134007104/2020
 C241T C3037T C14408T A23403G C26534Y GGG28881AAC

EPI_ISL_423076
 2020-03-24 2020-04-12
 United Kingdom hCoV-19/England/20134009504/2020
 A2480G C2558T G11083T C14805T G26144T C29675T

EPI_ISL_423081
 2020-03-24 2020-04-12
 United Kingdom hCoV-19/England/201340120/2020
 A2480G C2558T C11074T G11083T C14805T G26144T G28079T

EPI_ISL_423084
 2020-03-24 2020-04-12
 United Kingdom hCoV-19/England/201340127/2020
 A2480G C2558T A10828C G11083T C14805T G26144T

EPI_ISL_423086
 2020-03-24 2020-04-12
 United Kingdom hCoV-19/England/20134015704/2020
 C241T C1059T C3037T C14408T A23403G G24368T C25156T G25563T

EPI_ISL_423091
 2020-03-24 2020-04-12
 United Kingdom hCoV-19/England/20134016802/2020
 A1194R G11083T G12832T C14805T C17004Y T17247C C25214T G26144T

EPI_ISL_423092
 2020-03-24 2020-04-12
 United Kingdom hCoV-19/England/20134016902/2020
 C241T G1245A C3037T C14408T G21159A A23403G A23670G GGG28881AAC

EPI_ISL_423102
 2020-03-24 2020-04-12
 United Kingdom hCoV-19/England/20134019202/2020
 C241T C3037T C14408T A23403G T23488Y C25350T

EPI_ISL_423110
 2020-03-24 2020-04-12
 United Kingdom hCoV-19/England/20134020504/2020
 A2480G C2558T G5665A C6151T G11083T T11748A C14805T G26144T

EPI_ISL_423112
 2020-03-24 2020-04-12
 United Kingdom hCoV-19/England/20134021004/2020
 AAGTCATTT686- A4060W G11083T G13627T C14805T C15540T C17550Y G26144T A28338G

EPI_ISL_423113
 2020-03-24 2020-04-12
 United Kingdom hCoV-19/England/20134021104/2020
 A2480G C2558T G11083T C14805T G26144T

EPI_ISL_423117
 2020-03-24 2020-04-12
 United Kingdom hCoV-19/England/20134021804/2020
 C241T C1059T C3037T C14408T A23403G C25214T G25563T

EPI_ISL_423122
 2020-03-24 2020-04-12
 United Kingdom hCoV-19/England/20134023104/2020
 G411R A2480G C2558T G11083T C14805T G26144T C26801G

EPI_ISL_423123
 2020-03-24 2020-04-12
 United Kingdom hCoV-19/England/20134023204/2020
 G411R A2480G C2558T G11083T C14805T G26144T C26801G

EPI_ISL_423126
 2020-03-24 2020-04-12
 United Kingdom hCoV-19/England/20134024104/2020
 A2480G C2558T G11083T C14805T G26144T

EPI_ISL_423132
 2020-03-24 2020-04-12
 United Kingdom hCoV-19/England/20134025904/2020
 C241T C3037T C14408T A23403G G27281T GGG28881AAC

EPI_ISL_423148
 2020-03-24 2020-04-12
 United Kingdom hCoV-19/England/20134060804/2020
 A2480G C2558T C4827T G11083T C14805T C18508T C18713T G26144T

EPI_ISL_423151
 2020-03-24 2020-04-12
 United Kingdom hCoV-19/England/20134064204/2020
 A2480G C2558T C4084T G11083T C14805T G25494T G26144T A26319T

EPI_ISL_423152
 2020-03-24 2020-04-12
 United Kingdom hCoV-19/England/20134064904/2020
 A1230G A2480G C2558T A10323G G11083T C14805T C18652T G26144T C27791T C28473Y

EPI_ISL_423154
 2020-03-24 2020-04-12
 United Kingdom hCoV-19/England/20134067304/2020
 C241T C3037T C11681T C14408T A23403G C25350T C27005T

EPI_ISL_423158
 2020-03-24 2020-04-12
 United Kingdom hCoV-19/England/20134068604/2020
 A2480G C2558T C4827T G11083T C14805T C18508T C18713T G26144T

EPI_ISL_423160
 2020-03-24 2020-04-12
 United Kingdom hCoV-19/England/20134068904/2020
 A2480G C2558T G3863A A10323G G11083T C14805T C18652T G26144T T28852C

EPI_ISL_423172
 2020-03-24 2020-04-12
 United Kingdom hCoV-19/England/20134078004/2020
 C241T C313T C3037T C14408T A23403G GGG28881AAC G28960T

EPI_ISL_423174
 2020-03-24 2020-04-12
 United Kingdom hCoV-19/England/20134078404/2020
 A2480G C2558T C7011T C10615Y G11083T G11405A C14805T A19476G G26144T C28076Y C28869T

EPI_ISL_423178
 2020-03-24 2020-04-12
 United Kingdom hCoV-19/England/20134079504/2020
 A2480G C2558T C7011T G11083T G11405A C14805T A19476R G26144T C27769Y C28869T

EPI_ISL_423231
 2020-03-24 2020-04-12
 United Kingdom hCoV-19/England/201360178/2020
 A2480G C2558T G11083T A11090T C14805T G26144T A28175G C29739T

EPI_ISL_423238
 2020-03-24 2020-04-12
 United Kingdom hCoV-19/England/201360201/2020
 C241T A2480G C2558T G11083T C14805T C23638T G26144T

EPI_ISL_423241
 2020-03-24 2020-04-12
 United Kingdom hCoV-19/England/201360206/2020
 C241T C3037T C14408T G21204T A23403G GGG28881AAC

EPI_ISL_423741
 2020-03-24 2020-04-12
 United Kingdom hCoV-19/England/20132021004/2020
 C241T C2416T C3037T C14408T C14786T G20578T A23403G T25485C G25563T

EPI_ISL_423771
 2020-03-24 2020-04-12
 United Kingdom hCoV-19/England/20132032504/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_423809
 2020-03-24 2020-04-12
 United Kingdom hCoV-19/England/20132081104/2020
 C241T C3037T C14408T A23403G

EPI_ISL_423837
 2020-03-24 2020-04-12
 United Kingdom hCoV-19/England/20132104104/2020
 C241T C3037T C14408T G21204T A23403G GGG28881AAC

EPI_ISL_423845
 2020-03-24 2020-04-12
 United Kingdom hCoV-19/England/20132107704/2020
 A2480G C2558T G11083T C14805T C18979T G26144T

EPI_ISL_424301
 2020-03-24 2020-04-12
 United States hCoV-19/USA/WA-UW-1948/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA GTT669- C884T G1397A G8653T G11083T A19073G G27915T T28688C C29077T G29742T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_424302 MT326056
 2020-03-24 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1878/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAA29897-

EPI_ISL_424304 MT326058
 2020-03-24 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1930/2020
 ATTAAAGG1- ATACCTTCCCAGGTAACAAACCAACC12- C241T C1059T G1736A C3037T C14408T C16260T A23403G G25563T C28821A AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_424305 MT326059
 2020-03-24 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1877/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCC1- C241T C1059T C3037T C14408T A23403G TTG25532- G25563T G29553A AAAAAAAAAAA29893-

EPI_ISL_424309 MT326063
 2020-03-24 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1881/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- AACC34HTTH C241T C1059T C3037T C14408T G16912T A23403G G25563T G29553A

EPI_ISL_424311 MT326065
 2020-03-24 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1880/2020
 ATTAAA1- AAC34TTT C241T C1059T C3037T C14408T G19962C A23403G G25563T T28144C C29311T AAAAA29899-

EPI_ISL_424312 MT326066
 2020-03-24 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1955/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- AACC34HTTH C241T C1059T C3037T C14408T A23403G G25563T G29553A AA29902-

EPI_ISL_424313 MT326067
 2020-03-24 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1956/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- AACC34HTTH C241T C1059T C3037T C14408T A23403G G25563T G29553A AA29902-

EPI_ISL_424314 MT326068
 2020-03-24 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1921/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- AACC34HTTH C241T C1059T C3037T C14408T A23403G G25563T C27630T G29553A AAAAAAAA29896-

EPI_ISL_424316 MT326069
 2020-03-24 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1890/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- AACC34HTTH C241T C1059T C3037T C12880T C14408T A23403G G25563T G29553A -29904GANANANANA

EPI_ISL_424317 MT326070
 2020-03-24 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1928/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C241T C1059T C3037T C14408T A23403G G25563T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_424323 MT326076
 2020-03-24 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1944/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C8782T C17326T C17747T A17858G A17884G C18060T G19645T T28144C T29758C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_424325 MT326078
 2020-03-24 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1954/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- AACC34HTTH C241T C1059T C3037T C6040T C12242T C14408T A23403G G25563T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_424329 MT326081
 2020-03-24 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1984/2020
 ATTAAAGGT1- TACCTTCCCAGGTAACAAACCAACC13- C8782T C17747T A17858G C18060T T28144C C28887T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_424333 MT326023
 2020-03-24 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-2006/2020
 ATTAAAGGTTTATA1- AACC34TTTA C241T C1059T C3037T C7164T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_424334 MT326024
 2020-03-24 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1994/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCT1- C241T C1059T C3037T C12880T C14408T A23403G G25563T G29553A AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_424335 MT326025
 2020-03-24 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1998/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACT1- C1059T C3037T C14408T C16750T A23403G G25563T TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_424337 MT326027
 2020-03-24 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1977/2020
 ATTAAA1- AACC34TTTH C241T C1059T C3037T C14408T G16912T A23403G G25563T G29553A CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_424338 MT326028
 2020-03-24 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1986/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- G1820A C8782T C17747T A17858G C18060T T28144C C28887T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_424339 MT326029
 2020-03-24 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-2016/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C14408T C18176T A23403G G25563T GA29868VT A29903-

EPI_ISL_424340 MT326030
 2020-03-24 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-2009/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C241T C1059T C3037T C14408T A23403G G25563T G29553A

EPI_ISL_424341 MT326031
 2020-03-24 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-2008/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTA1- C241T C1059T C3037T G4975T C14408T A23403G G25523T G25563T T27869C T29194C A29869T -29904A

EPI_ISL_424538
 2020-03-24 2020-04-13
 Iceland hCoV-19/Iceland/516/2020
 

EPI_ISL_425048
 2020-03-24 2020-04-14
 Belgium hCoV-19/Belgium/UGent-1/2020
 T514C ATG1605- G14622T C17410T T18723C

EPI_ISL_425050
 2020-03-24 2020-04-14
 Belgium hCoV-19/Belgium/UGent-2/2020
 C241T C3037T C14408T T17126C A20268G A23403G C28546A

EPI_ISL_425059
 2020-03-24 2020-04-14
 Belgium hCoV-19/Belgium/UGent-19/2020
 T514C ATG1605- C6312T G14622T C17410T T18723C

EPI_ISL_425062
 2020-03-24 2020-04-14
 Belgium hCoV-19/Belgium/UGent-22/2020
 C241T C3037T C14408T A23403G G24794T

EPI_ISL_425063
 2020-03-24 2020-04-14
 Belgium hCoV-19/Belgium/UGent-24/2020
 C241T C3037T C14408T G14580T A23403G

EPI_ISL_425315
 2020-03-24 2020-04-14
 United Kingdom hCoV-19/England/CAMB-74605/2020
 A187G C241T C3037T C14408T A23403G

EPI_ISL_425575
 2020-03-24 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10E669/2020
 C241T C3037T C9246T G10097A C14408T A23403G C23731T G27378T G28580T GGG28881AAC

EPI_ISL_425576
 2020-03-24 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10E678/2020
 C2558T G11083T C14805T C18501T G26144T

EPI_ISL_425581
 2020-03-24 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10E6C3/2020
 C241T C3037T A7877G T11798C C14408T C16289T A23403G G25429T

EPI_ISL_425584
 2020-03-24 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10E71B/2020
 ATG1605- C6696T C11001T

EPI_ISL_425586
 2020-03-24 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10E739/2020
 A1515G C3619T C9223T G11083T C14805T T17247C G26144T

EPI_ISL_425587
 2020-03-24 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10E748/2020
 A2480G C2558T G11083T C14805T G26144T

EPI_ISL_425918
 2020-03-24 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB150/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_425919
 2020-03-24 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB151/2020
 C241T C683T C3037T C14408T A20268G G21123T A23403G C28854T

EPI_ISL_425924
 2020-03-24 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB162/2020
 C241T C1415T C3037T C14408T C22879A A23403G

EPI_ISL_425925
 2020-03-24 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB168/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_425927
 2020-03-24 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB181/2020
 C241T C3037T C14408T A23403G C25433T C27476T

EPI_ISL_426058 MT345817
 2020-03-24 2020-04-14
 United States SARS-CoV-2/human/USA/ID-UW-2134/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA T153G C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T AAAAAAAAAAA29893-

EPI_ISL_426084 MT345798
 2020-03-24 2020-04-14
 United States SARS-CoV-2/human/USA/WA-UW-2091/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_426087 MT345814
 2020-03-24 2020-04-14
 United States SARS-CoV-2/human/USA/WA-UW-2104/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTA1- C241T C1059T C3037T C14408T C14697T A23403G G25563T G29553A A29903R

EPI_ISL_426089 MT345811
 2020-03-24 2020-04-14
 United States SARS-CoV-2/human/USA/WA-UW-2108/2020
 ATTAAAGGTTTATA1- C241T C1059T C3037T G3259T C14408T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_426094 MT345815
 2020-03-24 2020-04-14
 United States SARS-CoV-2/human/USA/WA-UW-2137/2020
 ATTAAAGGTTTATACCT1- AACC34HTTH A187G C241T C1616T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_426106 MT345844
 2020-03-24 2020-04-14
 United States SARS-CoV-2/human/USA/WA-UW-2180/2020
 AT1- AGGT6- CCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGG15- T150C T153G G237D C241T C3037T G3871T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_426122 MT345846
 2020-03-24 2020-04-14
 United States SARS-CoV-2/human/USA/WA-UW-2234/2020
 ATTAAAGGTTTATA1- CCCAGG19- CAAACCAACCAA28T G219T C241T C1059T C3037T C14408T A23403G G25563T AAA29901-

EPI_ISL_426123 MT345849
 2020-03-24 2020-04-14
 United States SARS-CoV-2/human/USA/WA-UW-2235/2020
 ATTAAAGGTTTAT1- A14G CT16TC CAGGTAACAAACCA21T ACC35TTA C241T C1059T C1329T C3037T A6277G G8102T C14408T G14712A C14877T A23403G G25563T AAAAAA29898-

EPI_ISL_426125 MT345848
 2020-03-24 2020-04-14
 United States SARS-CoV-2/human/USA/WA-UW-2238/2020
 ATTAAAGGTTT1- TT76AC C84G TCT232YMY C241T C1059T C3037T G3410A C14408T A23403G G25563T G29553A AC29869TH AAAA29900-

EPI_ISL_426129 MT345841
 2020-03-24 2020-04-14
 United States SARS-CoV-2/human/USA/WA-UW-2247/2020
 A1C TAAAGG3- TT9YY AAC34HWY C8782T C17747T A17858G C18060T A27924G T28144C AAAAAAAAAAAAAAA29889-

EPI_ISL_426130 MT345840
 2020-03-24 2020-04-14
 United States SARS-CoV-2/human/USA/WA-UW-2249/2020
 ATTAAA1- AACC34HTTH C8782T C17747T A17858G C18060T T22516C A27924G T28144C AAAA29900-

EPI_ISL_426131 MT345842
 2020-03-24 2020-04-14
 United States SARS-CoV-2/human/USA/WA-UW-2250/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTC1- C8782T C17747T A17858G C18060T A27924G T28144C A29903-

EPI_ISL_426132 MT345847
 2020-03-24 2020-04-14
 United States SARS-CoV-2/human/USA/WA-UW-2253/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C1059T C3037T A10579G C14408T A23403G G25563T AAA29872TTT A29903-

EPI_ISL_426485
 2020-03-24 2020-04-17
 United States hCoV-19/USA/AZ-TG271872/2020
 C241T ATG518- C1059T C3037T C14408T C21648T A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426541
 2020-03-24 2020-04-17
 United States hCoV-19/USA/AZ-TG271870/2020
 C241T C1059T C3037T C14408T C21648T A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426543
 2020-03-24 2020-04-17
 United States hCoV-19/USA/AZ-TG271880/2020
 C241T C1059T C3037T C14408T C17825T A23403G G25563T G25767C C27964T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426697 MT451278
 2020-03-24 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC394/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C3037T C3373A C11195T C14408T A17940T A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_426698 MT451279
 2020-03-24 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC395/2020
 ATT1- C241T C1059T T2561C C3037T G3564T C11916T C14408T C19018T A23403G G24933T G25563T

EPI_ISL_426699 MT641666
 2020-03-24 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC396/2020
 ATTA1- ATG1605- G3564T C5007T C6852T G8790T C8917T G13571K C17898T G24933T

EPI_ISL_426701 MT451281
 2020-03-24 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC398/2020
 ATTA1- C241T C3037T C14408T A23403G A26530G

EPI_ISL_426702 MT451282
 2020-03-24 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC399/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G3564T C14408T C15324T A23403G G24933T C25710T

EPI_ISL_426703 MT641667
 2020-03-24 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC400/2020
 C241T C3037T G3564T G8790K G13571T C14408T A23403G G24933T C27046T G28557T GGG28881AAC C29666T

EPI_ISL_426705 MT451283
 2020-03-24 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC402/2020
 ATTA1- C241T G660K C1059T C3037T G3564T G8790T G11535T G13571T G14277T C14408T A23403G G24933T G25563T C29364T

EPI_ISL_426707 MT451284
 2020-03-24 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC404/2020
 ATTAAAGGTTTATACC1- C241T C3037T C14408T A23403G G27358T GGG28881AAC

EPI_ISL_426745 MT451317
 2020-03-24 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC449/2020
 C241T C3037T C14408T C15324T G15982T A23403G G28233T

EPI_ISL_426772 MT451355
 2020-03-24 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC500/2020
 C241T C3037T G11534A C14408T A23403G G27703T GGG28881AAC

EPI_ISL_426793 MT451361
 2020-03-24 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC527/2020
 C241T C3037T C6723T C14408T A23403G T26094C

EPI_ISL_426797 MT451365
 2020-03-24 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC531/2020
 C241T C1059T C3037T C10851T C14408T A23403G G25563T

EPI_ISL_426802 MT451369
 2020-03-24 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC536/2020
 C241T C3037T G3564T C14408T C22446Y A23403G G24933T A26530G

EPI_ISL_426805 MT641689
 2020-03-24 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC540/2020
 C241T C1059T C3037T G3564T C14408T C21648T A23403G C23673T G24933T G25563T C26176T

EPI_ISL_426806 MT451371
 2020-03-24 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC541/2020
 C241T C3037T G3564T C14408T C15324T A23403G

EPI_ISL_426824 MT451388
 2020-03-24 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC563/2020
 C241T C3037T T7438C C14408T A23403G A26864G C29353T

EPI_ISL_426881 MT451630
 2020-03-24 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC912/2020
 C241T C3037T T7438C C14408T A23403G A26864G C29353T

EPI_ISL_426904 MT641661
 2020-03-24 2020-04-17
 Australia SARS-CoV-2/human/AUS/NT17/2020
 C241T C3037T C14408T A23403G A24862G

EPI_ISL_426942 MT451448
 2020-03-24 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC646/2020
 T490A C3177T C6285T C8782T C15960T T18736C G19684T C24034T C27635T G28077C T28144C A29700G

EPI_ISL_427081 MT451569
 2020-03-24 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC807/2020
 C241T C2416T C3037T G4510T C7765T C14408T G20578T A23403G G25563T G27670T

EPI_ISL_427308
 2020-03-24 2020-04-18
 Russia hCoV-19/Russia/StPetersburg-RII4307V/2020
 C241T C3037T C14408T G14593A A23403G A27426G GGG28881AAC

EPI_ISL_427309
 2020-03-24 2020-04-18
 Russia hCoV-19/Russia/StPetersburg-RII4308V/2020
 C241T C3037T C14408T G14593A A23403G A27426G GGG28881AAC

EPI_ISL_427397
 2020-03-24 2020-04-18
 Taiwan hCoV-19/Taiwan/TSGH-10/2020
 T2G A5C GT8A A12G C15T -18CGATGCTTATAACATGATGATCTCAGCTGGCTTTAGCTTGTGGGTTTACAAACAATTTGA A2480G C2558T G11083T C14805T G26144T -29904TAAACAAAAAAAAAAAAAAAATTTTAAAAAAAAAAAAAAAATTAAAATAAAACAAAGAATTTTT

EPI_ISL_427622
 2020-03-24 2020-04-19
 United States hCoV-19/USA/AK-PHL118/2020
 ATTAAAGGTTTAT1- C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_428231
 2020-03-24 2020-04-20
 Taiwan hCoV-19/Taiwan/TSGH-14/2020
 C241T C3037T G7017T C14408T C14675G A18794T C18877T A23403G G25563T

EPI_ISL_428290
 2020-03-24 2020-04-20
 United States hCoV-19/USA/WI-UW-194/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428291
 2020-03-24 2020-04-20
 United States hCoV-19/USA/WI-UW-195/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C14408T A23403G A23592G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428293
 2020-03-24 2020-04-20
 United States hCoV-19/USA/WI-UW-197/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428294
 2020-03-24 2020-04-20
 United States hCoV-19/USA/WI-UW-198/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25793T T27299C GGG28881AAC T29148C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428295
 2020-03-24 2020-04-20
 United States hCoV-19/USA/WI-UW-199/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C3736T C8655T G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428296
 2020-03-24 2020-04-20
 United States hCoV-19/USA/WI-UW-200/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C11916T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428306
 2020-03-24 2020-04-20
 United States hCoV-19/USA/WI-UW-210/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T21024C G29711T A29725G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428350
 2020-03-24 2020-04-20
 France hCoV-19/France/HF3419/2020
 C241T C1059T C3037T C14408T C14925T C16045T C18167T A23403G C23589T C25047T G25563T G28817A AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_428351
 2020-03-24 2020-04-20
 France hCoV-19/France/IDF3509/2020
 C241T C1059T C3037T C10582T C14408T A23403G C23707T G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_428353
 2020-03-24 2020-04-20
 France hCoV-19/France/HF3534/2020
 C241T C2416T C3037T T12722C C14408T A23403G G25563T C27925T G28925T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_428358
 2020-03-24 2020-04-20
 France hCoV-19/France/HF3598/2020
 C241T C2416T C3037T C7224T C9430T C14408T G16846T G22014T A23403G G25563T GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_428726
 2020-03-24 2020-04-21
 United States hCoV-19/USA/WI-UW-252/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C8782T T18736C G19684T C24034T T26729C C27635T G28077C T28144C A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428895
 2020-03-24 2020-04-22
 Russia hCoV-19/Russia/Perm-82707/2020
 C241T A2497G C3037T C11919T C14408T A23403G GGG28881AAC

EPI_ISL_428897
 2020-03-24 2020-04-22
 Russia hCoV-19/Russia/StPetersburg-82005/2020
 G2286A C5907T G11083T C14805T G26144T G28842T

EPI_ISL_428917
 2020-03-24 2020-04-22
 Russia hCoV-19/Russia/Tatarstan-82208/2020
 C48A C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_429134
 2020-03-24 2020-04-23
 Sweden hCoV-19/Sweden/20-08693/2020
 C241T C1059T C1302T C3037T C14408T C15895T C21364T A23403G G25563T T25885G

EPI_ISL_429211
 2020-03-24 2020-04-23
 Switzerland hCoV-19/Switzerland/GE5708/2020
 ATT1- C241T C3037T C4551T C14408T C15324T A23403G

EPI_ISL_429212
 2020-03-24 2020-04-23
 Switzerland hCoV-19/Switzerland/GE0056/2020
 ATTAAAG1- C241T C3037T C14408T C15324T A23403G

EPI_ISL_429231
 2020-03-24 2020-04-23
 Italy hCoV-19/Italy/TE6571/2020
 A39G T42C C44A C48A C241T A639R C3037T G3056R A3341R C3737Y T4902W C5621Y C6021S TG8827WK A9397R T11134Y TT12827YY C14408T T14830Y A17346M T18936W T19491Y C19495Y T22045Y C22730M G22854R A23403G C23520Y A24440R TC26532WY GGG28881AAC AA29902-

EPI_ISL_429232
 2020-03-24 2020-04-23
 Italy hCoV-19/Italy/TE6572/2020
 A39G TTC42CYA C48A A55R C241T C3037T C4668M C14408T A23403G GGG28881AAC

EPI_ISL_429469
 2020-03-24 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI358/2020
 C241T C1059T T2572C C3037T C14408T G22801T A23403G G25563T

EPI_ISL_429483
 2020-03-24 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI383/2020
 C241T C1059T C1302T C3037T C14408T A23403G G25563T

EPI_ISL_429484
 2020-03-24 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI384/2020
 C241T C3037T G10265A C14408T A23403G GGG28881AAC

EPI_ISL_429485
 2020-03-24 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI385/2020
 C241T C1059T C1302T C3037T C14408T A23403G G25563T

EPI_ISL_429486
 2020-03-24 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI390/2020
 C241T C3037T C14408T C15857T A23403G GGG28881AAC C29296T

EPI_ISL_429488
 2020-03-24 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI393/2020
 C241T C1059T C1302T C3037T C14408T A23403G G25563T

EPI_ISL_429489
 2020-03-24 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI394/2020
 C241T C1059T C1302T C3037T C7029T C14408T A23403G G25563T

EPI_ISL_429524
 2020-03-24 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI425A/2020
 C241T C3037T C7834T C14408T G15243T A23403G

EPI_ISL_429526
 2020-03-24 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI430/2020
 C241T C3037T C7834T C14408T A23403G

EPI_ISL_429527
 2020-03-24 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI431/2020
 C241T C1059T C1093T C1302T C3037T C14408T A23403G G25563T G28487A

EPI_ISL_429528
 2020-03-24 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI432/2020
 C241T C1059T C3037T C12781T C14408T C15842A A23403G A23975G G25563T

EPI_ISL_429529
 2020-03-24 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI434/2020
 C241T C1059T C3037T T8788C C14408T A23403G G25563T G26951A

EPI_ISL_429537
 2020-03-24 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI450/2020
 C241T G611A C3037T C14408T A23403G

EPI_ISL_429565
 2020-03-24 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI488/2020
 C241T C1059T C3037T T8788C C14408T G19199A A23403G G25563T G26951A

EPI_ISL_429569
 2020-03-24 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI494/2020
 C241T C1059T C3037T C3966T C14408T A23403G G25563T

EPI_ISL_429570
 2020-03-24 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI495/2020
 C241T C1059T C3037T T8788C C14408T A23403G A23796G G25563T G26951A

EPI_ISL_429572
 2020-03-24 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI501/2020
 C241T C1059T C3037T T8788C C14408T A23403G G25563T G26951A

EPI_ISL_429581
 2020-03-24 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI513/2020
 C241T C1059T C3037T T4630C C14408T G19086T A23403G G25563T

EPI_ISL_429758
 2020-03-24 2020-04-24
 Luxembourg hCoV-19/Luxembourg/LNS8167314/2020
 G23A C241T C3037T C3261T C14408T A23403G T24151C GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_429759
 2020-03-24 2020-04-24
 Luxembourg hCoV-19/Luxembourg/LNS9455951/2020
 C241T C3037T G4255T C14408T A23403G A26530G GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_429777
 2020-03-24 2020-04-24
 Luxembourg hCoV-19/Luxembourg/LNS0994857/2020
 C241T C313T C2980T C3037T A3076T C14408T A23403G GGG28881AAC C29249T GAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29864-

EPI_ISL_429991 MT598174
 2020-03-24 2020-04-24
 United States SARS-CoV-2/human/USA/SEARCH-0017-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A23403G GGG28881AAC CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_430015 MT811565
 2020-03-24 2020-04-24
 Jordan SARS-CoV-2/human/JOR/SEARCH-0057-JOR/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C2048T T7270C G11083T C14805T G26144T G28842T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_430016 MT598173
 2020-03-24 2020-04-24
 United States SARS-CoV-2/human/USA/SEARCH-0016-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- ATG1605- A21137G G26266A CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_431017
 2020-03-24 2020-04-29
 United States hCoV-19/USA/AK-PHL040/2020
 ATTAAAGGTTTA1- C241T C1059T C3037T C3293T C14408T A21825C A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_432183
 2020-03-24 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-25366/2020
 ATTA1- C241T A2869G C3037T C14408T A23403G GGG28881AAC C29095T

EPI_ISL_433074
 2020-03-24 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB153/2020
 C241T C1059T C3037T G13445T C14408T A23403G G25563T C29311T

EPI_ISL_433305
 2020-03-24 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR495/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C12710T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_433307
 2020-03-24 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR507/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- A10770G C12710T C25466T T27761C C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_433308
 2020-03-24 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR512/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2196C G11083T C14805T C17172A T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_434262 MT632826
 2020-03-24 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S502/2020
 C241T C1059T C3037T G7560A C14408T G19999T G21452T A23403G G25563T

EPI_ISL_434271 MT632835
 2020-03-24 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S511/2020
 C241T C379A C1059T T2244C C3037T C14408T C16859T A23403G G25563T

EPI_ISL_434277 MT632791
 2020-03-24 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S517/2020
 C241T C1059T C3037T G7560A C14408T G19999T G21452T A23403G G25563T

EPI_ISL_434289 MT632820
 2020-03-24 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S529/2020
 G6530A C8782T A11595G C16163T C17747T A17858G C18060T T23010C T28144C

EPI_ISL_434291 MT632929
 2020-03-24 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S531/2020
 C241T C1059T C3037T C7164T C14408T A23403G G25563T G29553A

EPI_ISL_434296 MT632831
 2020-03-24 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S536/2020
 C241T C379A C1059T T2244C C3037T C14408T G21123T A23403G G25563T

EPI_ISL_434300 MT632816
 2020-03-24 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S540/2020
 C241T C1059T C3037T G7560A C14408T G19999T G21452T A23403G G25563T

EPI_ISL_434301 MT632912
 2020-03-24 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S541/2020
 C241T C1059T C3037T C14408T A23403G G25563T G29553A

EPI_ISL_434303 MT632799
 2020-03-24 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S543/2020
 C241T C1059T C3037T G7560A C14408T G19999T G21452T A23403G G25563T C29253T

EPI_ISL_434307 MT632878
 2020-03-24 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S547/2020
 C241T C1059T C3037T G7560A C14408T G19999T G21452T A23403G G25563T

EPI_ISL_434310 MT632780
 2020-03-24 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S550/2020
 C241T C1059T C3037T A3421G G7560A C14408T G19999T G21452T A23403G G25563T

EPI_ISL_434311 MT632814
 2020-03-24 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S551/2020
 C241T C1059T C3037T G7560A C14408T G19999T G21452T A23403G G25563T

EPI_ISL_434320 MT632808
 2020-03-24 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S560/2020
 C241T C1059T C3037T G7560A C14408T G19999T G21452T A23403G G25563T

EPI_ISL_434322 MT632844
 2020-03-24 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S562/2020
 C241T C379A C1059T C3037T G6036A C14408T C17949T A23403G G25563T

EPI_ISL_434324 MT632854
 2020-03-24 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S564/2020
 C241T C1059T C3037T G7560A C14408T G19999T G21452T A23403G G25563T

EPI_ISL_434330 MT632935
 2020-03-24 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S570/2020
 C241T C1059T C3037T C14408T A23403G G25563T G29553A

EPI_ISL_434339 MT633001
 2020-03-24 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S579/2020
 C8782T C17747T A17858G C18060T T28144C C28311T

EPI_ISL_434343 MT632943
 2020-03-24 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S583/2020
 A3492C C8782T A14199G C17747T A17858G C18060T T28144C

EPI_ISL_434546 MT419815
 2020-03-24 2020-04-29
 United States SARS-CoV2/human/USA/PR-CDC-S6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGC1- C241T C3037T C14408T A23403G GGG28881AAC AAAA29900-

EPI_ISL_434547 MT419816
 2020-03-24 2020-04-29
 United States SARS-CoV2/human/USA/PR-CDC-S7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGC1- A8728G C8782T G17280T C17747T A17858G C18060T A24694T G25687T A25806T T28144C AAAA29900-

EPI_ISL_434551 MT419820
 2020-03-24 2020-04-29
 United States SARS-CoV2/human/USA/PR-CDC-S11/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGC1- C241T C1059T A1632T C3037T C14408T A23403G G25563T AAAA29900-

EPI_ISL_434587
 2020-03-24 2020-04-30
 United States hCoV-19/USA/MD-HP00037/2020
 C241T C1059T C3037T C14408T A20755C A23403G G25563T

EPI_ISL_434640
 2020-03-24 2020-04-30
 United States hCoV-19/USA/MD-HP00044/2020
 C241T C3037T T9172C A10948G C14408T A23403G G26730T GGG28881AAC

EPI_ISL_434653
 2020-03-24 2020-04-30
 Sweden hCoV-19/Sweden/20-06376/2020
 C241T C3037T C14408T A23403G GGG28881AAC G29705T

EPI_ISL_434873
 2020-03-24 2020-05-01
 United States hCoV-19/USA/TX-HMH198/2020
 T490A C3177T C6040T C7334T C8782T G12478A T18736C C24034T T26729C G28077C T28144C C28896G A29700G

EPI_ISL_434876
 2020-03-24 2020-05-01
 United States hCoV-19/USA/TX-HMH201/2020
 C241T C3037T A6616G G14118T C14408T G15243T A23403G

EPI_ISL_434877
 2020-03-24 2020-05-01
 United States hCoV-19/USA/TX-HMH202/2020
 C241T C2388T C3037T C14408T A23403G C23707T C29441G

EPI_ISL_434878
 2020-03-24 2020-05-01
 United States hCoV-19/USA/TX-HMH203/2020
 C241T C3037T C14408T G15243T G17252T A23403G

EPI_ISL_434879
 2020-03-24 2020-05-01
 United States hCoV-19/USA/TX-HMH204/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T

EPI_ISL_434881
 2020-03-24 2020-05-01
 United States hCoV-19/USA/TX-HMH206/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_434882
 2020-03-24 2020-05-01
 United States hCoV-19/USA/TX-HMH207/2020
 T490A C3177T C6040T C8782T C8950T G12478A T18736C T19713C C24034T T26729C G28077C T28144C C28896G C29451T A29700G

EPI_ISL_434883
 2020-03-24 2020-05-01
 United States hCoV-19/USA/TX-HMH208/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434884
 2020-03-24 2020-05-01
 United States hCoV-19/USA/TX-HMH209/2020
 T490A C3177T C6040T C8782T C8950T G12478A T18736C C24034T T26729C G28077C T28144C C28896G C29451T A29700G

EPI_ISL_434885
 2020-03-24 2020-05-01
 United States hCoV-19/USA/TX-HMH210/2020
 C241T C1059T C3037T C10319T C14408T A23403G G25563T C25904T C27964T

EPI_ISL_434887
 2020-03-24 2020-05-01
 United States hCoV-19/USA/TX-HMH212/2020
 T490A C3177T C7124T C8782T C9561T T18736C C24034T C25433T T26729C C26895T G28077C T28144C A29700G

EPI_ISL_434888
 2020-03-24 2020-05-01
 United States hCoV-19/USA/TX-HMH213/2020
 C241T C1059T C3037T C14408T G15638A A15640T A23403G G25563T C27964T

EPI_ISL_434889
 2020-03-24 2020-05-01
 United States hCoV-19/USA/TX-HMH214/2020
 C241T C3037T C14408T C15324T A23403G

EPI_ISL_434891
 2020-03-24 2020-05-01
 United States hCoV-19/USA/TX-HMH234/2020
 T490A C3177T C6040T C8782T C8950T A9244G G12478A T18736C C24034T C26447T T26729C G28077C T28144C C28896G C29451T A29700G

EPI_ISL_434960
 2020-03-24 2020-05-01
 United States hCoV-19/USA/TX-HMH369/2020
 C241T C3037T C14408T A23403G

EPI_ISL_435145
 2020-03-24 2020-05-03
 Italy hCoV-19/Italy/TE6644/2020
 C241T C3037T A6866W A6869T C7224T C14408T C18167T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_436103
 2020-03-24 2020-05-06
 Taiwan hCoV-19/Taiwan/TSGH-18/2020
 A1G -5CGGCGCCGATCTAAAGTCATTTGACTTAGGCGACGAGCTTGGCACTGATCCTTATGAAGATT C241T C2416T C3037T C14408T A23403G T25514C G25563T

EPI_ISL_436287
 2020-03-24 2020-05-06
 Spain hCoV-19/Spain/Valencia192/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C14408T A20268G A23403G G29734C AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_436478
 2020-03-24 2020-05-06
 United States hCoV-19/USA/PA-MGSC25-05/2020
 C241T C3037T C14408T A23403G G25563T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_436495
 2020-03-24 2020-05-06
 United States hCoV-19/USA/PA-MGSC47-05/2020
 C241T C1059T C3037T C14408T A23403G G25563T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_436501
 2020-03-24 2020-05-06
 United States hCoV-19/USA/PA-MGSC53-05/2020
 C241T C1059T C3037T C14408T A23403G G25563T C28836T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_436627 MT706439
 2020-03-24 2020-05-06
 United States SARS-CoV-2/human/USA/WI-UW-333/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A994G G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_436628 MT706440
 2020-03-24 2020-05-06
 United States SARS-CoV-2/human/USA/WI-UW-334/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A994G G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_436629 MT706441
 2020-03-24 2020-05-06
 United States SARS-CoV-2/human/USA/WI-UW-335/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T G25660T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_436847 MT439293
 2020-03-24 2020-05-06
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20116/2020
 ATTAAAGGTTTATACCTTCC1- G713S C8782T C17010T C17747Y A17858G C18060T T28144C AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_436850 MT439284
 2020-03-24 2020-05-06
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20124/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C8782T G16381A T17877C C22323Y G25500T C25854T T28144C G28878A G29742A AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_436852 MT439279
 2020-03-24 2020-05-06
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20134/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_436853 MT439283
 2020-03-24 2020-05-06
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20138/2020
 ATTAAAGGTTTATACCT1- C241T C3037T C14408T A23403G T27299C GGG28881AAC T29148C TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_436854 MT439297
 2020-03-24 2020-05-06
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20140/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATC1- C241T C1059T C3037T T6905G C14408T A23403G G25563T T29678Y ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_436855 MT439296
 2020-03-24 2020-05-06
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20142/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_436856 MT439273
 2020-03-24 2020-05-06
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20148/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A20268G A23403G C26313T C28863T GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_436859 MT439287
 2020-03-24 2020-05-06
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20180/2020
 ATTAAAGGTT1- C241T C1059T C3037T C14408T A23403G G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_436995
 2020-03-24 2020-05-08
 Denmark hCoV-19/Denmark/ALAB-SSI-613/2020
 C241T C1059T C1302T C3037T C14408T A23403G G25563T

EPI_ISL_436996
 2020-03-24 2020-05-08
 Denmark hCoV-19/Denmark/ALAB-SSI-614/2020
 C241T C1059T C1889T C3037T C14408T A23403G G25563T

EPI_ISL_436997
 2020-03-24 2020-05-08
 Denmark hCoV-19/Denmark/ALAB-SSI-615/2020
 C241T C1059T C3037T C3393T A6058G G9176A G11083T C14408T G17427T C20016T A23403G G25563T

EPI_ISL_437001
 2020-03-24 2020-05-08
 Denmark hCoV-19/Denmark/ALAB-SSI-620/2020
 C241T C3037T G10265A G12514T C14408T A15972G C19718T A23403G T28759C GGG28881AAC

EPI_ISL_437003
 2020-03-24 2020-05-08
 Denmark hCoV-19/Denmark/ALAB-SSI-623/2020
 C241T C1059T C1302T C3037T C14408T A23403G G25563T

EPI_ISL_437004
 2020-03-24 2020-05-08
 Denmark hCoV-19/Denmark/ALAB-SSI-624/2020
 C241T C1059T C3037T C14408T G19086T A23403G G25563T

EPI_ISL_437006
 2020-03-24 2020-05-08
 Denmark hCoV-19/Denmark/ALAB-SSI-626/2020
 C241T C1059T C3037T T6469C T8788C C14408T A23403G G25563T G26951A

EPI_ISL_437007
 2020-03-24 2020-05-08
 Denmark hCoV-19/Denmark/ALAB-SSI-628/2020
 C241T C1059T C3037T G10465A C14408T C21742T A23403G G25563T

EPI_ISL_437090
 2020-03-24 2020-05-08
 Latvia hCoV-19/Latvia/011/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_437197
 2020-03-24 2020-05-08
 Austria hCoV-19/Austria/Graz-MUG1/2020
 C241T C14408T A23403G

EPI_ISL_437263
 2020-03-24 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0064/2020
 C241T C3037T C14408T G19825T A23403G A28855G GGG28881AAC

EPI_ISL_437334
 2020-03-24 2020-05-08
 Turkey hCoV-19/Turkey/HSGM-10232/2020
 ATTAAA1- C228T G1397A C3903T A9514G G11083T A13376G C13476T C19484T C26549Y G26720C T28688C T28835C G29742T AAAAAAAAAA29894-

EPI_ISL_437516
 2020-03-24 2020-05-11
 United States hCoV-19/USA/AK-PHL122/2020
 ATTAAAGGTTTATACCTTCC1- C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T C28606T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_437564
 2020-03-24 2020-05-11
 United States hCoV-19/USA/CA-SR0245/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_437566
 2020-03-24 2020-05-11
 United States hCoV-19/USA/CA-SR0240/2020
 C241T C1059T C3037T G10533A C14408T C16289T C16762T A23403G G25563T C29460A

EPI_ISL_437586
 2020-03-24 2020-05-11
 United States hCoV-19/USA/CA-SR0197/2020
 C241T C1059T C3037T A4198T C14408T T19791C A23403G G25563T C25710T

EPI_ISL_437589
 2020-03-24 2020-05-11
 United States hCoV-19/USA/CA-SR0192/2020
 C241T C1059T C3037T C14408T C16762T A23403G G25563T C29870A

EPI_ISL_437596
 2020-03-24 2020-05-11
 United States hCoV-19/USA/CA-SR0181/2020
 C241T C3037T C14408T A23403G C23595T C29870A

EPI_ISL_437626 MT457402
 2020-03-24 2020-05-11
 India SARS-CoV-2/human/IND/GMC-KP1125/2020
 C241T C3037T C14408T C18877T T19538Y A23403G G25563T G29868R C29870A

EPI_ISL_437946
 2020-03-24 2020-05-12
 Austria hCoV-19/Austria/CeMM0078/2020
 C241T C3037T C3373A G11516A C14408T T22521K A23403G G25269T GGG28881AAC T29772C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_437947
 2020-03-24 2020-05-12
 Austria hCoV-19/Austria/CeMM0080/2020
 T514C G1806R A2661W C12488Y C15341Y T22521K G26109T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_437948
 2020-03-24 2020-05-12
 Austria hCoV-19/Austria/CeMM0083/2020
 C241T C3037T C14408T C18526T A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_437949
 2020-03-24 2020-05-12
 Austria hCoV-19/Austria/CeMM0084/2020
 C241T C1059T C3037T C14408T T22521K A23403G G25563T ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_437950
 2020-03-24 2020-05-12
 Austria hCoV-19/Austria/CeMM0086/2020
 C241T C3037T C14408T T22521K A23403G C23802Y C24715T C27630T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_437951
 2020-03-24 2020-05-12
 Austria hCoV-19/Austria/CeMM0088/2020
 C241T C1059T C3037T C14408T A23403G G25563T A27020G AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_437952
 2020-03-24 2020-05-12
 Austria hCoV-19/Austria/CeMM0089/2020
 C241T C3037T C14408T T22521K A23403G GGG28881AAC G29540T A29865R AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_438095
 2020-03-24 2020-05-12
 Austria hCoV-19/Austria/CeMM0266/2020
 G1440A G2891A C7011T T22521K G25593C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_438096
 2020-03-24 2020-05-12
 Austria hCoV-19/Austria/CeMM0267/2020
 C241T C3037T C14408T T22521K A23403G A24862G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_438097
 2020-03-24 2020-05-12
 Austria hCoV-19/Austria/CeMM0269/2020
 C241T C3037T C14408T A20268G T22521K A23403G C24333Y TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_438098
 2020-03-24 2020-05-12
 Austria hCoV-19/Austria/CeMM0271/2020
 C241T C2509T C3037T C14408T T22521K A23403G C27046T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_438099
 2020-03-24 2020-05-12
 Austria hCoV-19/Austria/CeMM0272/2020
 C241T C3037T G4510T C12073T C14408T T22521K A23403G C24642T C27046T G28395T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_438100
 2020-03-24 2020-05-12
 Austria hCoV-19/Austria/CeMM0273/2020
 C241T C3037T C14408T T22521K A23403G C27046T GGG28881AAC G29543K ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_438101
 2020-03-24 2020-05-12
 Austria hCoV-19/Austria/CeMM0274/2020
 C241T C1059T C3037T C3261A C12525T C14408T T22521K A23403G G25563T G29422T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_438102
 2020-03-24 2020-05-12
 Austria hCoV-19/Austria/CeMM0275/2020
 C241T C3037T C14408T T22521K A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_441416
 2020-03-24 2020-05-12
 United Kingdom hCoV-19/Northern Ireland/NIRE-FB3B4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C988T G11083T C14805T T17247C G26144T C29870A

EPI_ISL_441427
 2020-03-24 2020-05-12
 United Kingdom hCoV-19/Northern Ireland/NIRE-FB475/2020
 ATTA1- C241T C1420T C3037T C14408T A23403G GGG28881AAC C29870A

EPI_ISL_441984
 2020-03-24 2020-05-12
 United Kingdom hCoV-19/England/SHEF-C5F19/2020
 C241T C3037T C14408T A23403G C25350T

EPI_ISL_443271
 2020-03-24 2020-05-12
 France hCoV-19/France/B5355/2020
 C241T C3037T C14408T G20024T A23403G C27923T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_443272
 2020-03-24 2020-05-12
 France hCoV-19/France/B5359/2020
 C241T C690T C1059T C3037T T13006C C14408T A23403G G25563T C25688T G28378T AAAAAAAAAAAAAAAAAAAAAA29882-

EPI_ISL_443273
 2020-03-24 2020-05-12
 France hCoV-19/France/B5363/2020
 C241T C1059T C3037T T13006C C14408T A23403G G25563T C25688T G28378T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_443312
 2020-03-24 2020-05-12
 France hCoV-19/France/CVL4430/2020
 C241T C1059T C3037T G8179T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_444793
 2020-03-24 2020-05-14
 Australia hCoV-19/Australia/QLDID939/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C1059T C3037T C14408T G19599T A23403G G25563T CAT27294- C27964T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_444999
 2020-03-24 2020-05-14
 United States hCoV-19/Guam/GU_NHG_02/2020
 C6312A G11083T C13730T C23929T C28311T

EPI_ISL_445082
 2020-03-24 2020-05-14
 United States hCoV-19/USA/TX_GCID_192000119/2020
 ATTAAAGGTTTA1- C8782T A15246G C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_445083
 2020-03-24 2020-05-14
 United States hCoV-19/USA/TX_GCID_192000124/2020
 ATTAAAGG1- TT9CC CCTT15- C241T C1059T C3037T C9166T G12521A C14408T A23403G G25563T C27964T T29867A ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_445105
 2020-03-24 2020-05-15
 United States hCoV-19/USA/CA-SR0111/2020
 C241T C1059T C3037T C7945T CC14407TT C17850T A23403G G25563T

EPI_ISL_447134
 2020-03-24 2020-05-16
 Belgium hCoV-19/Belgium/ULG-0544/2020
 C241T C2113T C3037T C7765T C14408T C17690T C18877T C21575T A23403G G25563T

EPI_ISL_447135
 2020-03-24 2020-05-16
 Belgium hCoV-19/Belgium/ULG-0546/2020
 C241T C2113T C3037T C7765T C10369T C14408T C17690T C18877T A23403G G25563T C26042T

EPI_ISL_447136
 2020-03-24 2020-05-16
 Belgium hCoV-19/Belgium/ULG-7921/2020
 C241T C3037T C14408T C15324T G21793T A23403G G28690T

EPI_ISL_447209 MT506683
 2020-03-24 2020-05-16
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20239/2020
 C241T C1059T C3037T C14408T C18795T A23403G G25563T G28392K

EPI_ISL_447211 MT506687
 2020-03-24 2020-05-16
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20241/2020
 C241T C1059T C3037T C14408T C17550T A23403G G25563T

EPI_ISL_447296
 2020-03-24 2020-05-17
 Israel hCoV-19/Israel/701002462/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAA29892-

EPI_ISL_447297
 2020-03-24 2020-05-17
 Israel hCoV-19/Israel/701002458/2020
 C241T C1059T C3037T C14408T C20091T A23403G G25563T AAAAAAAAAAAA29892-

EPI_ISL_447299
 2020-03-24 2020-05-17
 Israel hCoV-19/Israel/701002455/2020
 C241T C3037T C14408T A23403G AAAAAAAAAAAA29892-

EPI_ISL_447300
 2020-03-24 2020-05-17
 Israel hCoV-19/Israel/701002442/2020
 C241T C3037T G9692A C14408T C18877T A23403G G25563T G29688T AAAAAAAAAAAA29892-

EPI_ISL_447301
 2020-03-24 2020-05-17
 Israel hCoV-19/Israel/701002440/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAA29892-

EPI_ISL_447302
 2020-03-24 2020-05-17
 Israel hCoV-19/Israel/701002431/2020
 C241T C313T C3037T C14408T G14874T A23403G GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_447303
 2020-03-24 2020-05-17
 Israel hCoV-19/Israel/701002426/2020
 C241T C1059T C3037T C14408T G19429T A23403G G25563T AAAAAAAAAAAA29892-

EPI_ISL_447594
 2020-03-24 2020-05-18
 Australia hCoV-19/Australia/QLDID941/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C241T C3037T C14408T A23403G GGG28881AAC G29540T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_447595
 2020-03-24 2020-05-18
 Australia hCoV-19/Australia/QLDID942/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C8626T C14408T A23403G C27046T GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_447832 MT459832
 2020-03-24 2020-05-11
 Greece SARS-CoV-2/human/GRC/34_36284/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_448817
 2020-03-24 2020-05-19
 United Kingdom hCoV-19/England/OXON-AF188/2020
 G600A G1820A A2480G C2558T T8599C G11083T C14805T G26144T

EPI_ISL_448820
 2020-03-24 2020-05-19
 United Kingdom hCoV-19/England/OXON-AF249/2020
 C241T C3037T C5817T C14408T A23403G GGG28881AAC

EPI_ISL_448822
 2020-03-24 2020-05-19
 United Kingdom hCoV-19/England/OXON-AF2A3/2020
 G600A G1820A A2480G C2558T T8599C G11083T C14805T G26144T

EPI_ISL_450026
 2020-03-24 2020-05-19
 United States hCoV-19/USA/NY-PV09338/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T G5554A C14408T A23403G C25463T G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450027
 2020-03-24 2020-05-19
 United States hCoV-19/USA/NY-PV09339/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTT1- C241T C1059T C3037T C14408T A23403G G25563T G26746T TAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29775-

EPI_ISL_450028
 2020-03-24 2020-05-19
 United States hCoV-19/USA/NY-PV09340/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C11224T C11900T C14408T A23403G G25563T C29546T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450029
 2020-03-24 2020-05-19
 United States hCoV-19/USA/NY-PV09341/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATC1- C241T C1059T C3037T C14408T A23403G G25563T GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_450030
 2020-03-24 2020-05-19
 United States hCoV-19/USA/NY-PV09342/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C11916T C14408T C18998T A20553G A23403G G25563T G29540A AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450031
 2020-03-24 2020-05-19
 United States hCoV-19/USA/NY-PV09343/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T C1059T C3037T C14408T C21145T A23403G G25563T GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_450032
 2020-03-24 2020-05-19
 United States hCoV-19/USA/NY-PV09344/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450033
 2020-03-24 2020-05-19
 United States hCoV-19/USA/NY-PV09345/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T C1059T C1170T C3037T C14408T A23403G G25563T GGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29778-

EPI_ISL_450034
 2020-03-24 2020-05-19
 United States hCoV-19/USA/NY-PV09346/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G G25563T AGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29776-

EPI_ISL_450035
 2020-03-24 2020-05-19
 United States hCoV-19/USA/NY-PV09347/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTT1- C241T C1059T C3037T C14408T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450036
 2020-03-24 2020-05-19
 United States hCoV-19/USA/NY-PV09348/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450037
 2020-03-24 2020-05-19
 United States hCoV-19/USA/NY-PV09349/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCT1- C241T G2672T C3037T C14408T C18877T C22000T A23403G G25563T GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_450038
 2020-03-24 2020-05-19
 United States hCoV-19/USA/NY-PV09350/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T C1059T C3037T C14408T C21575T A23403G G25563T GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_450039
 2020-03-24 2020-05-19
 United States hCoV-19/USA/NY-PV09351/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G A23796G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450040
 2020-03-24 2020-05-19
 United States hCoV-19/USA/NY-PV09352/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C1059T C3037T C6664A G7675T C10851T C14408T A17697T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450041
 2020-03-24 2020-05-19
 United States hCoV-19/USA/NY-PV09353/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C3037T C14408T A23403G TACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29760-

EPI_ISL_450042
 2020-03-24 2020-05-19
 United States hCoV-19/USA/NY-PV09354/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T C1059T C1387T C3037T C14408T A20755C A23403G G25563T AGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29763-

EPI_ISL_450348
 2020-03-24 2020-05-20
 Norway hCoV-19/Norway/Trondheim-S10/2020
 ATTAAAGGTTTATACCTTCC1- C241T C1059T C3037T A6400G C14408T A23403G G25563T AAAAAAAAAAAAAAA29889-

EPI_ISL_450453 MT499179
 2020-03-24 2020-05-21
 United States SARS-CoV-2/human/USA/CA-CZB-1204/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C7528T C14408T A23403G G25563T

EPI_ISL_450454 MT499180
 2020-03-24 2020-05-21
 United States SARS-CoV-2/human/USA/CA-CZB-1205/2020
 C241T C3037T T9172C A10948G C14408T A23403G G26730T GGG28881AAC

EPI_ISL_450460 MT499186
 2020-03-24 2020-05-21
 United States SARS-CoV-2/human/USA/CA-CZB-1211/2020
 ATTA1- C900T G11083T C14805T T17247C C21575T G26144T

EPI_ISL_450484 MT394528
 2020-03-24 2020-04-27
 United States SARS-CoV-2/human/USA/CA-CZB-59X002/2020
 ATTAAAG1- C9924T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_450485 MT394529
 2020-03-24 2020-04-27
 United States SARS-CoV-2/human/USA/CA-CZB-59X001/2020
 ATTAAAGGTTT1- C9924T C23816Y AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_450616 MT509683
 2020-03-24 2020-05-21
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20337/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_451137
 2020-03-24 2020-05-23
 Australia hCoV-19/Australia/SAP130/2020
 ATTAAAGGTTTA1- G374A C8782T C17747T A17858G C18060T T28144C

EPI_ISL_451140
 2020-03-24 2020-05-23
 Australia hCoV-19/Australia/SAP136/2020
 ATTAAAGG1- C4540T C8782T T9477A C14805T G23120T G25979T T28144C C28311T C28657T C28863T

EPI_ISL_452183
 2020-03-24 2020-05-27
 Italy hCoV-19/Italy/VR_20COV17-11/2020
 AT1- C241T C3037T C14408T A23403G GGG28881AAC TGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29785-

EPI_ISL_452184
 2020-03-24 2020-05-27
 Italy hCoV-19/Italy/VR_20COV18-48/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C48A C98T C241T C3037T C14408T A23403G TGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29785-

EPI_ISL_452272
 2020-03-24 2020-05-27
 United States hCoV-19/USA/MI-MDHHS-SC20398/2020
 C241T C1059T C3037T C14408T G22094R A23403G G25563T

EPI_ISL_452274
 2020-03-24 2020-05-27
 United States hCoV-19/USA/MI-MDHHS-SC20400/2020
 C241T C1059T C3037T C14408T C23277T A23403G G25563T

EPI_ISL_452337
 2020-03-24 2020-05-27
 China hCoV-19/Beijing/DT-travelFR02/2020
 C241T C3037T C10619A A11862G A23403G G28881A

EPI_ISL_452556
 2020-03-24 2020-05-27
 Spain hCoV-19/Spain/COV001217/2020
 C241T C3037T C14408T A20268G A23403G

EPI_ISL_452557
 2020-03-24 2020-05-27
 Spain hCoV-19/Spain/COV001216/2020
 C8782T T9477A C14805T G25979T G28109T T28144C C28657T C28863T

EPI_ISL_452561
 2020-03-24 2020-05-27
 Spain hCoV-19/Spain/COV001209/2020
 C8782T T9477A G10787T C14805T C22227T G25979T T28144C C28657T C28863T

EPI_ISL_453467
 2020-03-24 2020-05-27
 United Kingdom hCoV-19/Northern Ireland/NIRE-101E31/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C20436T A23403G GGG28881AAC

EPI_ISL_453468
 2020-03-24 2020-05-27
 United Kingdom hCoV-19/Northern Ireland/NIRE-101E40/2020
 A1- C241T C3037T C14408T T17126C A20268G G20274T A23403G G24197A

EPI_ISL_453469
 2020-03-24 2020-05-27
 United Kingdom hCoV-19/Northern Ireland/NIRE-101E6E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- A1515G C9223T G11083T G11464A C14805T T17247C G26144T

EPI_ISL_453470
 2020-03-24 2020-05-27
 United Kingdom hCoV-19/Northern Ireland/NIRE-101E7D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- C241T C3037T C10078T C14408T C19170T G19509A A23403G GGG28881AAC

EPI_ISL_453471
 2020-03-24 2020-05-27
 United Kingdom hCoV-19/Northern Ireland/NIRE-101E8C/2020
 ATTA1- C241T G2177R C3037T C14408T A23403G GGG28881AAC

EPI_ISL_453473
 2020-03-24 2020-05-27
 United Kingdom hCoV-19/Northern Ireland/NIRE-101EAA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T G713T C3037T C14408T A23403G GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_453475
 2020-03-24 2020-05-27
 United Kingdom hCoV-19/Northern Ireland/NIRE-101EC8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C19118T A23403G C27046T GGG28881AAC

EPI_ISL_453476
 2020-03-24 2020-05-27
 United Kingdom hCoV-19/Northern Ireland/NIRE-101ED7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_453813
 2020-03-24 2020-05-28
 Portugal hCoV-19/Portugal/PT0097/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C14408T A23403G C26873T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_453814
 2020-03-24 2020-05-28
 Portugal hCoV-19/Portugal/PT0098/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1059T C3037T G11083T T14394C C14408T G16852T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_453817
 2020-03-24 2020-05-28
 Portugal hCoV-19/Portugal/PT0101/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C14408T A23403G A27751T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_453865
 2020-03-24 2020-05-28
 Portugal hCoV-19/Portugal/PT0149/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C1059T C3037T C5348T C11824T C14097T C14408T A23403G G25563T C28528T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454142
 2020-03-24 2020-05-28
 Portugal hCoV-19/Portugal/PT0418/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T C15925T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454300
 2020-03-24 2020-05-28
 Portugal hCoV-19/Portugal/PT0577/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C14408T C18175T A20268G A23403G C25658T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454301
 2020-03-24 2020-05-28
 Portugal hCoV-19/Portugal/PT0578/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T C18175T A20268G A23403G C25658T G29751T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454302
 2020-03-24 2020-05-28
 Portugal hCoV-19/Portugal/PT0579/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T C18175T A20268G A23403G C25658T G26918A TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454343
 2020-03-24 2020-05-28
 Portugal hCoV-19/Portugal/PT0620/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3045T C3140T C9665T C14408T A23403G G24077T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454534
 2020-03-24 2020-05-28
 India hCoV-19/India/NIV-4622/2020
 C8782T C17440T G19816T G22468T T28144C G28878A CAAT29675AGCC G29688A C29696A GG29794AC

EPI_ISL_454609 MT533206
 2020-03-24 2020-05-28
 United States SARS-CoV-2/human/USA/CA-CZB-1272/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C2511Y G3521K G3638R C12403T G16822S C23799Y C27874T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_454769
 2020-03-24 2020-05-29
 Netherlands hCoV-19/Netherlands/Utrecht_10020/2020
 ATTAAA1- C241T C3037T C14408T C19170T G19509A A23403G C26313T GGG28881AAC AAAAAA29898-

EPI_ISL_454790
 2020-03-24 2020-05-29
 Netherlands hCoV-19/Netherlands/Utrecht_10041/2020
 ATTAAAGGTTTATA1- C241T C3037T C14408T A23403G A24862G C26801T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_454948
 2020-03-24 2020-05-29
 China hCoV-19/Wuhan/HB-WH4-194/2020
 T383C C14554T C17690T

EPI_ISL_455215
 2020-03-24 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_413/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C478T C3037T G12550A C14408T A20268G C20740A A23403G C25578T G29734C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455216
 2020-03-24 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_414/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C20031A A23403G C27046T GGG28881AAC G29706T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455257
 2020-03-24 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_455/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1997T C3037T C14408T A23403G G29422T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455688 MT407654
 2020-03-24 2020-04-27
 China SARS-CoV-2/human/CHN/OS1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATC1- G11083T G26144T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_455689 MT407655
 2020-03-24 2020-04-27
 China SARS-CoV-2/human/CHN/OS5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATC1- A2480G C2558T G11083T C14805T G26144T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_455690 MT407656
 2020-03-24 2020-04-27
 China SARS-CoV-2/human/CHN/OS6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATC1- C241T C3037T C14408T C14980T T16413C A20268G A23403G A29874C AAAAAAAAAAAAAAAAAAAA29884-

EPI_ISL_455691 MT407657
 2020-03-24 2020-04-27
 China SARS-CoV-2/human/CHN/OS3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATC1- C241T C3037T A4297G C14408T A20268G A23403G G29734C GTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29825-

EPI_ISL_455692 MT407658
 2020-03-24 2020-04-27
 China SARS-CoV-2/human/CHN/OS2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATC1- C8782T T28144C ATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29819-

EPI_ISL_455693 MT407659
 2020-03-24 2020-04-27
 China SARS-CoV-2/human/CHN/OS4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATC1- C241T C3037T C14408T T19839C A23403G GGG28881AAC CA29870TG AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_456217
 2020-03-24 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1450/2020
 C241T C1059T A2439G C3037T C14408T A23403G G25563T C26625T

EPI_ISL_456222
 2020-03-24 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1561/2020
 C241T C2416T C3037T C4755T C14408T A21801C A23403G G25563T

EPI_ISL_456223
 2020-03-24 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1581/2020
 C241T C3037T C14408T T19839C A23403G G25552T GGG28881AAC

EPI_ISL_456224
 2020-03-24 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1597/2020
 G1085T T1368C C6990T G11083T C14805T C20736T G26144T

EPI_ISL_456233
 2020-03-24 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1623/2020
 A2568T C3096T G11083T C12781T G13627T C14805T C15540T G17944T C26013T G26144T A28338G

EPI_ISL_456238
 2020-03-24 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1756/2020
 C241T C3037T C14408T A23403G G25644T C26942T GGG28881AAC

EPI_ISL_457707
 2020-03-24 2020-06-02
 Oman hCoV-19/Oman/205024076/2020
 ATTAAAGGTTTATACCTTCCCAG1- G24T C241T C1059T C2110T C3037T C14408T A23403G G24368T G25563T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_457736
 2020-03-24 2020-06-02
 Italy hCoV-19/Italy/5062/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_457769 MT646054
 2020-03-24 2020-06-02
 United States SARS-CoV-2/human/USA/MD-HP00114/2020
 C241T C3037T A4589C C13730T C14408T A23403G G25429T

EPI_ISL_457801 MT646073
 2020-03-24 2020-06-02
 United States SARS-CoV-2/human/USA/DC-HP00059/2020
 C241T C1059T C3037T G4504T C5869T C14408T A23403G G25563T C27964T

EPI_ISL_457816 MT646087
 2020-03-24 2020-06-02
 United States SARS-CoV-2/human/USA/MD-HP00127/2020
 C241T C1059T C3037T G11401T C14408T C16260T A23403G G25563T G26690T C28821A

EPI_ISL_457817 MT646088
 2020-03-24 2020-06-02
 United States SARS-CoV-2/human/USA/MD-HP00128/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_457824
 2020-03-24 2020-06-02
 Turkey hCoV-19/Turkey/Istanbul-BezmCoV1/2020
 C241T AAGTCATTT686- C3037T C7765T C14408T C17690T C18877T A23403G G25563T C28432T

EPI_ISL_457993
 2020-03-24 2020-06-02
 Oman hCoV-19/Oman/RESP-20-5414/2020
 C8782T G11230T T28144C G28167A G28878A G29742A

EPI_ISL_458029
 2020-03-24 2020-06-03
 Taiwan hCoV-19/Taiwan/TSGH-38/2020
 C241T C1059T C3037T G11083T C14408T A23403G G25563T

EPI_ISL_458700
 2020-03-24 2020-06-04
 United Kingdom hCoV-19/England/NORT-288F5C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T2327K C3037T C14408T A16172R A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_459686
 2020-03-24 2020-06-04
 United Kingdom hCoV-19/Scotland/GCVR-17027D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C14408T A23403G C26895T GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_459868
 2020-03-24 2020-06-04
 Canada hCoV-19/Canada/ON_QGLO-04/2020
 TTAAAGGTTTATACCTTCCCAGGT2- C241T C1059T C3037T C14408T A23403G G25217T G25563T G29688T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_460145 MT520220
 2020-03-24 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00086/2020
 ATTAA1- C241T C2416T C3037T C14408T T19026G A19155G A23403G G25563T

EPI_ISL_460149 MT520224
 2020-03-24 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00023/2020
 ATTAAA1- C241T C3037T C14408T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_460214 MT520289
 2020-03-24 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00063/2020
 ATTAAA1- C8782T C17747T A17858G C18060T A24694T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_460240 MT520315
 2020-03-24 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00037/2020
 AT1- C241T C2416T C3037T C14408T A23403G G25563T G26233T

EPI_ISL_460281 MT520356
 2020-03-24 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00094/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C1059T C3037T T6069C C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_460326 MT520401
 2020-03-24 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00097/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C2416T C3037T C14408T A23403G G25563T G26233T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_460334 MT520409
 2020-03-24 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00039/2020
 A1- C241T C2416T C3037T C14408T A23403G G25563T G26233T AAA29901-

EPI_ISL_460661
 2020-03-24 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_488/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1997T C3037T C14408T A23403G G29422T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460662
 2020-03-24 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_489/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C478T C3037T G12550A C14408T A20268G C20740A A23403G G29734C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460674
 2020-03-24 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_501/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1997T C3037T C14408T A19359G A23403G G29422T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460684
 2020-03-24 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_511/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1997T C3037T C14408T A23403G G29422T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460686
 2020-03-24 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_513/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1997T C3037T C14408T A23403G G29422T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460763
 2020-03-24 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_600/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6310T C14408T C20148T A23403G G29422T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460782
 2020-03-24 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_619/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18788T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461155
 2020-03-24 2020-06-06
 Netherlands hCoV-19/Netherlands/NoordBrabant_120/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461182
 2020-03-24 2020-06-06
 Netherlands hCoV-19/Netherlands/NoordBrabant_147/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T A12820G C13119T C14805T T17247C G26144T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461255
 2020-03-24 2020-06-06
 Netherlands hCoV-19/Netherlands/Zeeland_17/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C11109T C14408T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461257
 2020-03-24 2020-06-06
 Netherlands hCoV-19/Netherlands/Zeeland_19/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C C1426T ATG1605- C27425G C27945T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461258
 2020-03-24 2020-06-06
 Netherlands hCoV-19/Netherlands/Zeeland_2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C11109T C14408T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461260
 2020-03-24 2020-06-06
 Netherlands hCoV-19/Netherlands/Zeeland_21/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4255T C14408T A23403G A26530G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461266
 2020-03-24 2020-06-06
 Netherlands hCoV-19/Netherlands/Zeeland_28/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T G25618A GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461283
 2020-03-24 2020-06-06
 Netherlands hCoV-19/Netherlands/Zeeland_44/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1537C C3037T T13006C C14408T G19684T A23403G G25563T C25688T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461284
 2020-03-24 2020-06-06
 Netherlands hCoV-19/Netherlands/Zeeland_45/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1537C C3037T T13006C C14408T G19684T A23403G G25563T C25688T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461436
 2020-03-24 2020-06-06
 United States hCoV-19/USA/WA-UW-5455/2020
 ATTAAAGGTTTATACCTT1- C241T C1059T C3037T C6040T C14408T A23403G G25563T GG29861AA G29864A TG29867AA C29870A -29904AAAAAAAAAAAAAAAAAA

EPI_ISL_462187
 2020-03-24 2020-06-08
 Belgium hCoV-19/Belgium/DWJ-0324333/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T19839C A23403G C24099T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462358
 2020-03-24 2020-06-08
 Singapore hCoV-19/Singapore/240/2020
 C6312A G11083T C13730T C19524T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_462359
 2020-03-24 2020-06-08
 Singapore hCoV-19/Singapore/241/2020
 C6312A A8364R G11083T C13730T C19524T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_462448
 2020-03-24 2020-06-08
 Spain hCoV-19/Spain/IrsiCaixa-sp142/2020
 C241T C3037T G5230T C11563T C14408Y A20268G A23403G CGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29750-

EPI_ISL_463972
 2020-03-24 2020-06-11
 Canada hCoV-19/Canada/ON_MU-S181/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T AAGTCATTT686- C1059T T2379Y TGAAGCTGTTGAAGCT2578- C2667S C3037T AT3744MW T8835- ACAAGAGAAGTGGGTTTTGTCGTGCCTGGTTTGCCTGGCACGATATTACGC8840- C14408T C16616T TTGTATGTAAATAAACATGCATTCCACACACCAGCTTTTGATAAAAGTGCTTTTGTTAATTTAAAACAATTACCATTTTTCTATTACTCTGACAGTCCATG19294- TCTCATGGAAAACAAGTAGTGTCAGATATAGATTATGTACCACTAAAGTCTGCTACGTGTATAACACGTTGCAATTTAGGTGGTGCTGTCTGTAGACATCAT19399- A19505G G19507T GTACAGATTGTATCTCGATGCTTATAACATGATGATCTCAGC19509A AA21550MW A23403G G25563T T27638K TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_465818
 2020-03-24 2020-06-11
 United Kingdom hCoV-19/England/20136016104/2020
 A2480G C2558T A10323G G11083T C14805T C18652T C25480Y G26144T

EPI_ISL_465819
 2020-03-24 2020-06-11
 United Kingdom hCoV-19/England/20136016204/2020
 A2480G C2558T A10323G G11083T C14805T C18652T G26144T

EPI_ISL_467444
 2020-03-24 2020-06-14
 South Africa hCoV-19/South Africa/KRISP-0055/2020
 C241T C3037T C14408T A23403G AAAAAAAAAAA29893-

EPI_ISL_467957
 2020-03-24 2020-06-16
 United States hCoV-19/USA/CA-SR0426/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_468002
 2020-03-24 2020-06-16
 Australia hCoV-19/Australia/SAP244/2020
 C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC G28908T

EPI_ISL_468401 MT628137
 2020-03-24 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1431/2020
 C241T C3037T C5467T C8389T C14408T C17550T C21997Y A23403G G25563T

EPI_ISL_468403 MT628139
 2020-03-24 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1433/2020
 A1- C241T C3037T G11401T C14408T A23403G C28603T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_468440 MT628173
 2020-03-24 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1490/2020
 ATTAAA1- C241T C3037T C14097Y C14408T A18174R A23403G TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_468441
 2020-03-24 2020-06-16
 United States hCoV-19/USA/CA-CZB-1491/2020
 C241T C3037T ATCCTACCATACAGAAAGACGTTCTTGAGTGTAATGTGAAAACTACCGAAGTTGTAGGAGAC6426- C6648M C6926T C13551T C14408T C19170T A19338R G19509A A23403G T25272C GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_468442
 2020-03-24 2020-06-16
 United States hCoV-19/USA/CA-CZB-1492/2020
 ATTA1- C241T C3037T ATCCTACCATACAGAAAGACGTTCTTGAGTGTAATGTGAAAACTACCGAAGTTGTAGGAGAC6426- C6926T C13517Y C14408T C19170T G19509A A23403G T25272C GGG28881AAC

EPI_ISL_468443
 2020-03-24 2020-06-16
 United States hCoV-19/USA/CA-CZB-1493/2020
 C241T C3037T ATCCTACCATACAGAAAGACGTTCTTGAGTGTAATGTGAAAACTACCGAAGTTGTAGGAGAC6426- C6926T C13551T C14220Y C14408T C19170T G19509A A23403G T25272C GGG28881AAC GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_468445
 2020-03-24 2020-06-16
 United States hCoV-19/USA/CA-CZB-1495/2020
 C241T C3037T ATCCTACCATACAGAAAGACGTTCTTGAGTGTAATGTGAAAACTACCGAAGTTGTAGGAGAC6426- C6926T C13551T C14408T C19170T G19509A A23403G T25272C GGG28881AAC

EPI_ISL_468519 MT628242
 2020-03-24 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1589/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C3037T T6450Y C14408T A23403G G25563T A28841G C29421T

EPI_ISL_468771
 2020-03-24 2020-06-17
 Spain hCoV-19/Spain/Zaragoza2487/2020
 C241T C3037T T8797C C12473Y C14408T A20268G A23403G G29734C

EPI_ISL_468779
 2020-03-24 2020-06-17
 Spain hCoV-19/Spain/Zaragoza2472/2020
 C4226A C8782T C17470T G22349A C26088T T28144C

EPI_ISL_468815
 2020-03-24 2020-06-17
 Spain hCoV-19/Spain/Zaragoza2422/2020
 C241T C3037T C14408T A20268G A23403G G29734C

EPI_ISL_468859
 2020-03-24 2020-06-17
 Spain hCoV-19/Spain/Zaragoza2423/2020
 C241T C2416T C3037T C14408T C20480T A23403G G25563T G26233T

EPI_ISL_469278
 2020-03-24 2020-06-18
 United Arab Emirates hCoV-19/United Arab Emirates/L4711/2020
 C884T G1397A G8653T G11083T A19073G T28688C G29742T

EPI_ISL_470840
 2020-03-24 2020-06-19
 Australia hCoV-19/Australia/WA22/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_470873
 2020-03-24 2020-06-19
 Australia hCoV-19/Australia/WA56/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C241T AAGTCATTT686- C1059T G2808A C3037T C14408T A23403G G25563T A26433G CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_475100
 2020-03-24 2020-06-23
 Sweden hCoV-19/Sweden/20-08461/2020
 C241T C1059T C3037T T10288A C14408T A23403G G24368T G25563T

EPI_ISL_475101
 2020-03-24 2020-06-23
 Sweden hCoV-19/Sweden/20-08357/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25537T G25563T

EPI_ISL_475102
 2020-03-24 2020-06-23
 Sweden hCoV-19/Sweden/20-08358/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T

EPI_ISL_475103
 2020-03-24 2020-06-23
 Sweden hCoV-19/Sweden/20-08359/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T C28833T

EPI_ISL_475104
 2020-03-24 2020-06-23
 Sweden hCoV-19/Sweden/20-08361/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T

EPI_ISL_475341
 2020-03-24 2020-06-23
 United Kingdom hCoV-19/England/PORT-2D12A6/2020
 C241T C1170T C3037T C14408T C16260T T19839C A23403G C26681T GGG28881AAC C29585T

EPI_ISL_475492
 2020-03-24 2020-06-23
 United Kingdom hCoV-19/England/SHEF-D0DA8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G11083T C14805T G26144T C26735T C26885T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475618
 2020-03-24 2020-06-23
 United States hCoV-19/USA/CA-CSMC14/2020
 C241T A1096G C3037T C14408T C18877T A23403G G25563T C27494T

EPI_ISL_476140
 2020-03-24 2020-06-25
 Sweden hCoV-19/Sweden/20-08356/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25537T G25563T

EPI_ISL_476141
 2020-03-24 2020-06-25
 Sweden hCoV-19/Sweden/20-08360/2020
 C241T C1059T C3037T C12068T C14408T A23403G G24368T G25537T G25563T

EPI_ISL_476142
 2020-03-24 2020-06-25
 Sweden hCoV-19/Sweden/20-08362/2020
 C241T C1059T C3037T C12870T C14408T A23403G G24368T G25563T

EPI_ISL_477698
 2020-03-24 2020-06-29
 United States hCoV-19/USA/WA-UW-2045/2020
 ATTAAA1- A31T C36T C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_477699
 2020-03-24 2020-06-29
 United States hCoV-19/USA/WA-UW-2048/2020
 AT1GA C36T C2263T C8782T C17747T A17858G C18060T T23010C T25542A T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_477700
 2020-03-24 2020-06-29
 United States hCoV-19/USA/WA-UW-2056/2020
 AT1-D A4D C36T C8782T C17747T A17858G C18060T T28144C C29870A -29904AAAAAAAAAAAAAAAAA

EPI_ISL_477701
 2020-03-24 2020-06-29
 United States hCoV-19/USA/WA-UW-2059/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C36T C241T C1059T C3037T G11417T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAA29885-

EPI_ISL_477727
 2020-03-24 2020-06-30
 United Kingdom hCoV-19/England/BIRM-5E407/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T TT27264- C27697T

EPI_ISL_478564
 2020-03-24 2020-06-30
 United Kingdom hCoV-19/England/NORT-2846E2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A7479G G11083T C14805T T17247C C25572T G26144T C28887T G29744T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478568
 2020-03-24 2020-06-30
 United Kingdom hCoV-19/England/NORT-2847C1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478569
 2020-03-24 2020-06-30
 United Kingdom hCoV-19/England/NORT-2847D0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478573
 2020-03-24 2020-06-30
 United Kingdom hCoV-19/England/NORT-2848EC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G C9223T G11083T G12331A C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479175
 2020-03-24 2020-06-30
 United Kingdom hCoV-19/England/PORT-2D12B5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G21724T A23403G C24096T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479176
 2020-03-24 2020-06-30
 United Kingdom hCoV-19/England/PORT-2D12C4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1457T A2480G C2558T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479179
 2020-03-24 2020-06-30
 United Kingdom hCoV-19/England/PORT-2D12F1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C19170T G19509A A23403G G28077T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479187
 2020-03-24 2020-06-30
 United Kingdom hCoV-19/England/PORT-2D1376/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1457T A2480G C2558T G11083T A12286G C14805T G26144T G28089T G28812T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479190
 2020-03-24 2020-06-30
 United Kingdom hCoV-19/England/PORT-2D13A3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1457T A2480G C2558T A9634T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479193
 2020-03-24 2020-06-30
 United Kingdom hCoV-19/England/PORT-2D13EF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T19839C A23403G C26681T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479644
 2020-03-24 2020-07-01
 Canada hCoV-19/Canada/NB-231/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2210T C3037T C3792T C14408T G17027A A23403G ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_479646
 2020-03-24 2020-07-01
 Canada hCoV-19/Canada/NB-233/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A T13216G C14408T A23403G C23731T GGG28881AAC ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_479668 MT679202
 2020-03-24 2020-06-29
 United States SARS-CoV-2/human/USA/NYU-VC-014/2020
 ATTAAAGG1- G167A C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29616A TGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29785-

EPI_ISL_479672 MT679206
 2020-03-24 2020-06-29
 United States SARS-CoV-2/human/USA/NYU-VC-018/2020
 C241T C1059T C3037T C14408T A20979T A23403G G25563T AA29902-

EPI_ISL_479942
 2020-03-24 2020-07-01
 Japan hCoV-19/Japan/PG-0258/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C9430T C14408T G22199T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_479985
 2020-03-24 2020-07-01
 Japan hCoV-19/Japan/PG-0310/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T C313T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480003
 2020-03-24 2020-07-01
 Japan hCoV-19/Japan/PG-0328/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C241T C2706T C3037T C14408T A23403G G25429T C28887T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_480036
 2020-03-24 2020-07-01
 Japan hCoV-19/Japan/PG-0366/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C6312A C13730T C17678T T19785C C23929T C26425T C28311T TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_480037
 2020-03-24 2020-07-01
 Japan hCoV-19/Japan/PG-0367/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACT1- C241T C313T C3037T C14408T A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_481743
 2020-03-24 2020-07-03
 Canada hCoV-19/Canada/NB_245/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T A2018G C3037T C14408T T21995C A23403G G25563T A29139G ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_482330
 2020-03-24 2020-07-03
 United States hCoV-19/USA/OR-PROV-050/2020
 C241T C1267T C3037T C6278T C14408T A17496G A23403G GGG28881AAC

EPI_ISL_482332
 2020-03-24 2020-07-03
 United States hCoV-19/USA/OR-PROV-052/2020
 A4236G G11083T C14805T T25655C G26144T

EPI_ISL_482584
 2020-03-24 2020-07-04
 China hCoV-19/Hangzhou/HZCDC7328/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T C1917T C3037T C14408T G21850T A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_483010
 2020-03-24 2020-07-06
 United States hCoV-19/USA/MN-MDH-1290/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C14408T A20268G A23403G CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_483011
 2020-03-24 2020-07-06
 United States hCoV-19/USA/MN-MDH-1291/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25563T T27504A AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_483012
 2020-03-24 2020-07-06
 United States hCoV-19/USA/MN-MDH-1292/2020
 ATTAA1- T490A C3177T C6040T C8782T T8944C G12478A T18736C C24034T C25803T T26729C G28077C T28144C C28507T C28896G G28985T A29700G GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_483013
 2020-03-24 2020-07-06
 United States hCoV-19/USA/MN-MDH-1293/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T G1463A C3037T G7557A C8818T C14408T A23403G G25563T C29803T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_483014
 2020-03-24 2020-07-06
 United States hCoV-19/USA/MN-MDH-1294/2020
 ATTA1- C241T C1059T C3037T C14408T A23403G G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_483015
 2020-03-24 2020-07-06
 United States hCoV-19/USA/MN-MDH-1295/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- A4236G G11083T C14805T T25655C G26144T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_483016
 2020-03-24 2020-07-06
 United States hCoV-19/USA/MN-MDH-1296/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C14408T A23403G G25563T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_483017
 2020-03-24 2020-07-06
 United States hCoV-19/USA/MN-MDH-1297/2020
 ATTAAA1- C8123T C8782T C17010T A17858G C18060T T28144C GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_483068
 2020-03-24 2020-07-07
 Australia hCoV-19/Australia/SAP195/2020
 ATTAAAGGTTTA1- T1368C C6990T G11083T C14805T C20736T C23707T G26144T

EPI_ISL_483094
 2020-03-24 2020-07-07
 Australia hCoV-19/Australia/SAP312/2020
 AT1- C4540T C8782T T9477A C13584T C14805T G25979T T28144C C28311T C28657T C28863T

EPI_ISL_483120
 2020-03-24 2020-07-07
 Australia hCoV-19/Australia/SAP344/2020
 ATTA1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T

EPI_ISL_483137
 2020-03-24 2020-07-07
 Australia hCoV-19/Australia/SAP366/2020
 ATT1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T

EPI_ISL_483706
 2020-03-24 2020-07-08
 Israel hCoV-19/Israel/n4278/2020
 C1059T C3037T C4999G G9173T T10426C C11109T C12115T -21782A A21892G C23525T T23620A C24308T A24684- G25563T C29555T

EPI_ISL_483986
 2020-03-24 2020-07-08
 United Kingdom hCoV-19/England/GSTT-265D5FA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C25350T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_483992
 2020-03-24 2020-07-08
 United Kingdom hCoV-19/England/GSTT-265D651/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A10948G C14408T A23403G C27542T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484008
 2020-03-24 2020-07-08
 United Kingdom hCoV-19/England/GSTT-265D76D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C635T G11083T G13627T C14805T C15540T G26144T A28338G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484012
 2020-03-24 2020-07-08
 United Kingdom hCoV-19/England/GSTT-265D7A9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G13617T C14408T A23403G C25350T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484709
 2020-03-24 2020-07-08
 United States hCoV-19/USA/MI-UM-2006S000850/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484753
 2020-03-24 2020-07-08
 United States hCoV-19/USA/MI-UM-2006S000915/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485974
 2020-03-24 2020-07-10
 United States hCoV-19/USA/WA-UW-2020/2020
 ATTAAAGG1- C21T A1808G C8782T C15240T C17747T A17858G C18060T C21774T T28144C AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_485976
 2020-03-24 2020-07-10
 United States hCoV-19/USA/WA-UW-2029/2020
 TTA2GGC AAC34TTT C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_485977
 2020-03-24 2020-07-10
 United States hCoV-19/USA/WA-UW-2034/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C241T C1059T C3037T C14408T A23403G G25563T G29553A AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_485978
 2020-03-24 2020-07-10
 United States hCoV-19/USA/WA-UW-2053/2020
 ATTAAA1- C6696T C8782T C17747T A17858G C18060T T28144C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_485979
 2020-03-24 2020-07-10
 United States hCoV-19/USA/WA-UW-2068/2020
 AT1GA A4T AA30CT C36T C241T C1059T C3037T C14408T G16912T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_487822
 2020-03-24 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5629/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T G9928T C26088T G27870T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487965
 2020-03-24 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5630/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C6696T C11001T C12357T C18652T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488189
 2020-03-24 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F9B4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488455
 2020-03-24 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F9A5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488470
 2020-03-24 2020-07-14
 United Kingdom hCoV-19/England/NORT-2849E9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C673Y C3037T C8895Y G10097A T13216G C14408T A19960G A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488475
 2020-03-24 2020-07-14
 United Kingdom hCoV-19/England/NORT-284934/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G C9223T G11083T C14805T T17247C A17799G C19170T C25427T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488611
 2020-03-24 2020-07-14
 United Kingdom hCoV-19/England/NORT-2846F1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G18859T G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488658
 2020-03-24 2020-07-14
 United Kingdom hCoV-19/England/NORT-28472B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3792T C14408T A23403G T25202K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488682
 2020-03-24 2020-07-14
 United Kingdom hCoV-19/England/NORT-28206E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C10790T C17747T A17858G C18060T T25202K T27384C T28144C G29747T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488725
 2020-03-24 2020-07-14
 United Kingdom hCoV-19/England/NORT-284846/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A G6463T A27669G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488768
 2020-03-24 2020-07-14
 United Kingdom hCoV-19/England/NORT-281DFF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G22468T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488780
 2020-03-24 2020-07-14
 United Kingdom hCoV-19/England/NORT-281F08/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488795
 2020-03-24 2020-07-14
 United Kingdom hCoV-19/England/NORT-281E1A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T G13627T C14805T C15540T G25302T G26144T A28338G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488796
 2020-03-24 2020-07-14
 United Kingdom hCoV-19/England/NORT-281D59/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G G22225T A23403G C29535T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491033
 2020-03-24 2020-07-15
 United States hCoV-19/USA/WA-UW-3534/2020
 ATTAAAGGTTTATA1- C36T C241T C3037T T6136C A10393G C14408T C14786T A23403G A28096G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_491172
 2020-03-24 2020-07-16
 Peru hCoV-19/Peru/INS-019/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAA1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T C27769T GGG28881AAC ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_491428
 2020-03-24 2020-07-16
 Peru hCoV-19/Peru/INS-022/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAA1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_491430
 2020-03-24 2020-07-16
 Peru hCoV-19/Peru/INS-025/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAA1- C8782T C10029T T12364A A19719T C26088T T28144C ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_492570
 2020-03-24 2020-07-20
 United Kingdom hCoV-19/England/BRIS-130D3C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492627
 2020-03-24 2020-07-20
 United Kingdom hCoV-19/England/BRIS-130CC6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G21724T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492682
 2020-03-24 2020-07-20
 United Kingdom hCoV-19/England/BRIS-130CF3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1426T A2480G C2558T G11083T G14710T C14805T G26144T T29680G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492879
 2020-03-24 2020-07-20
 United Kingdom hCoV-19/England/LOND-124C416/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A10948G C14408T A23403G C27542T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_494718
 2020-03-24 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1654/2020
 ATTA1- C241T C1059T C3037T G11138T C14408T C16762T A23403G G25563T

EPI_ISL_494727
 2020-03-24 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1667/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C1059T C3037T A8252G C14408T A23403G G25563T

EPI_ISL_494728
 2020-03-24 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1668/2020
 ATTA1-

EPI_ISL_494732
 2020-03-24 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1672/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T C16762T A23403G G25563T

EPI_ISL_494735
 2020-03-24 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1675/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_495359 MT791895
 2020-03-24 2020-07-22
 United States SARS-CoV-2/human/USA/FL-BPHL-0453/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C1059T C3037T C5884T G7936T C13487T C14408T G20060T C22858T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_495363 MT791899
 2020-03-24 2020-07-22
 United States SARS-CoV-2/human/USA/FL-BPHL-0457/2020
 AT1- C241T C1059T C3037T C14408T G18583T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_495395 MT791850
 2020-03-24 2020-07-22
 United States SARS-CoV-2/human/USA/FL-BPHL-0489/2020
 ATTAAAGGTT1- C241T C3037T C14408T C18877T C21727T A23403G G25563T G27987T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_495396 MT791851
 2020-03-24 2020-07-22
 United States SARS-CoV-2/human/USA/FL-BPHL-0490/2020
 AT1- C241T C1059T C3037T C14408T G18859T A23403G G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_495613
 2020-03-24 2020-07-23
 United States hCoV-19/USA/MN-MDH-1314/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C8782T C17747T A17858G C18060T C21614T A24694T T28144C GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_495614
 2020-03-24 2020-07-23
 United States hCoV-19/USA/MN-MDH-1315/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C6861T C14408T C19170T G19509A A23403G GGG28881AAC GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_495616
 2020-03-24 2020-07-23
 United States hCoV-19/USA/MN-MDH-1317/2020
 ATTAAAGGTTTA1- A2480G C2558T C3096T C9170T G11083T C14805T G26144T C29171T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_495619
 2020-03-24 2020-07-23
 United States hCoV-19/USA/MN-MDH-1320/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- T490A C3177T C8782T T18736C C24034T T26729C C26735T C27635T G28077C T28144C A29567C A29700G AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_495661 MT821781
 2020-03-24 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1486/2020
 ATTAAAGGTTTAT1- C241T C1059T C3037T C11916T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496921
 2020-03-24 2020-07-24
 United States hCoV-19/USA/MN-MDH-1335/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C1059T C3037T C14408T A23403G G25563T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_496922
 2020-03-24 2020-07-24
 United States hCoV-19/USA/MN-MDH-1336/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G1440A G2891A A27669G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_496923
 2020-03-24 2020-07-24
 United States hCoV-19/USA/MN-MDH-1337/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T C1059T C3037T C14408T A23403G G25563T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_501182
 2020-03-24 2020-07-31
 Malaysia hCoV-19/Malaysia/1121/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C6312A G11083T C13730T C19524T C23929T C28311T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_501183
 2020-03-24 2020-07-31
 Malaysia hCoV-19/Malaysia/1204/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A3180C C6312A G11083T C13730T C19524T C23929T C28311T

EPI_ISL_501560
 2020-03-24 2020-07-31
 United Kingdom hCoV-19/England/BRIS-130FDC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- A1904G C8090T C10789T C11008T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501561
 2020-03-24 2020-07-31
 United Kingdom hCoV-19/England/BRIS-130E66/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1426T A2480G C2558T C5310T G11083T G14710T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501566
 2020-03-24 2020-07-31
 United Kingdom hCoV-19/England/BRIS-130FFA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4148T C14408T A23403G GGG28881AAC G29737T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501581
 2020-03-24 2020-07-31
 United Kingdom hCoV-19/England/BRIS-131032/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501586
 2020-03-24 2020-07-31
 United Kingdom hCoV-19/England/BRIS-130F27/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C14408T C14786T G20578T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501588
 2020-03-24 2020-07-31
 United Kingdom hCoV-19/England/BRIS-130E1B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G C25433T C29546T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501592
 2020-03-24 2020-07-31
 United Kingdom hCoV-19/England/BRIS-130E57/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18131T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501597
 2020-03-24 2020-07-31
 United Kingdom hCoV-19/England/BRIS-130EC0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC A29078G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501601
 2020-03-24 2020-07-31
 United Kingdom hCoV-19/England/BRIS-130D78/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501609
 2020-03-24 2020-07-31
 United Kingdom hCoV-19/England/BRIS-130FAF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C28754T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501611
 2020-03-24 2020-07-31
 United Kingdom hCoV-19/England/BRIS-130EB1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501615
 2020-03-24 2020-07-31
 United Kingdom hCoV-19/England/EKHU-260F14E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T C11074T G11083T C14805T C24026Y G26144T C28313Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_506971
 2020-03-24 2020-08-02
 South Korea hCoV-19/Korea/KCDC2177/2020
 AT1- C241T C3037T C3602T C14408T T19839C C21575T A23403G GGG28881AAC

EPI_ISL_506972
 2020-03-24 2020-08-02
 South Korea hCoV-19/Korea/KCDC2178/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_506973
 2020-03-24 2020-08-02
 South Korea hCoV-19/Korea/KCDC2179/2020
 ATTAAAG1- C241T C3037T C14408T A23403G G25429T

EPI_ISL_507012 MT820463
 2020-03-24 2020-07-30
 Saudi Arabia SARS-CoV-2/human/SAU/KAIMRC03/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C3037T C14408T A23403G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_507016 MT820467
 2020-03-24 2020-07-30
 Saudi Arabia SARS-CoV-2/human/SAU/KAIMRC10/2020
 ATTAAAGGTTTATAC1- C241T C3037T C14408T A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_507089
 2020-03-24 2020-08-03
 United Kingdom hCoV-19/England/LOND-124D372/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- G1440A G2891A G6463T A24178G A27669G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_507090
 2020-03-24 2020-08-03
 United Kingdom hCoV-19/England/LOND-124D381/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_507141
 2020-03-24 2020-08-03
 United Kingdom hCoV-19/England/PORT-2D23FD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1457T A2480G C2558T G11083T C14805T G26144T C26340T G28851A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507712
 2020-03-24 2020-08-03
 United States hCoV-19/USA/MI-MDHHS-SC21458/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T C3037T C5892T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507916
 2020-03-24 2020-08-03
 United States hCoV-19/USA/MI-MDHHS-SC21140/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C14408T A23403G G25563T TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_507930
 2020-03-24 2020-08-03
 United States hCoV-19/USA/MI-MDHHS-SC21154/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T G960A C1059T C3037T C14408T G22708T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_508794 MT834638
 2020-03-24 2020-08-04
 United States SARS-CoV-2/human/USA/FL-BPHL-0590/2020
 A1- C241T C3037T C14408T C22450T T22588C A23403G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_508795 MT834639
 2020-03-24 2020-08-04
 United States SARS-CoV-2/human/USA/FL-BPHL-0591/2020
 AT1- C241T C3037T C14408T C22450T T22588C A23403G CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_508796 MT834640
 2020-03-24 2020-08-04
 United States SARS-CoV-2/human/USA/FL-BPHL-0592/2020
 ATTAA1- C241T C3037T C14408T C22450T T22588C A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_508797 MT834641
 2020-03-24 2020-08-04
 United States SARS-CoV-2/human/USA/FL-BPHL-0593/2020
 AT1- C241T C3037T C14408T C22450T T22588C A23403G GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_508798 MT834642
 2020-03-24 2020-08-04
 United States SARS-CoV-2/human/USA/FL-BPHL-0594/2020
 A1- C241T C3037T C14408T C18131T C22450T T22588C A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_508799 MT834643
 2020-03-24 2020-08-04
 United States SARS-CoV-2/human/USA/FL-BPHL-0595/2020
 ATTAAAGGT1- T490A C3177T C6040T C8782T C11124T G12478A T18736C C24034T T26729C G28077C T28144C C28896G A29700G TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_508801 MT834645
 2020-03-24 2020-08-04
 United States SARS-CoV-2/human/USA/FL-BPHL-0597/2020
 ATTAAAGGTTT1- T490A C3177T C6040T C8782T C11124T G12478A T18736C C24034T T26729C G28077C T28144C C28896G A29700G TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_508886
 2020-03-24 2020-08-04
 France hCoV-19/France/ARA14353/2020
 ATTAAAG1- C241T C1059T C3037T C14408T A23403G G25563T G29705T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_508954
 2020-03-24 2020-08-04
 France hCoV-19/France/ARA13353/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGG1- C241T C3037T C14408T C15324T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_508955
 2020-03-24 2020-08-04
 France hCoV-19/France/ARA13367/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGC1- C241T C3037T C14408T C15324T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_508956
 2020-03-24 2020-08-04
 France hCoV-19/France/ARA13374/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGT1- C241T C3037T A3291G C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_508957
 2020-03-24 2020-08-04
 France hCoV-19/France/ARA13515/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACG1- C241T C3037T C14408T C15324T G17722A A23403G AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_509706 MT844046
 2020-03-24 2020-08-05
 United States SARS-CoV-2/human/USA/WI-CDC-0953/2020
 C241T C1059T C14408T A23403G G25563T G25660T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_509730 MT846434
 2020-03-24 2020-08-05
 United States SARS-CoV-2/human/USA/FL-BPHL-0672/2020
 A1- C241T C1059T C3037T C14408T A23403G G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_509731 MT846435
 2020-03-24 2020-08-05
 United States SARS-CoV-2/human/USA/FL-BPHL-0673/2020
 A1- C241T C3037T C7858T C14408T C22450T T22588C A23403G GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_509732 MT846436
 2020-03-24 2020-08-05
 United States SARS-CoV-2/human/USA/FL-BPHL-0674/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C22450T T22588C A23403G TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_509734 MT846438
 2020-03-24 2020-08-05
 United States SARS-CoV-2/human/USA/FL-BPHL-0676/2020
 ATTA1- T490A C3177T C6040T C8782T C11124T G12478A T18736C C24034T T26729C G28077C T28144C C28896G A29700G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_509735 MT846439
 2020-03-24 2020-08-05
 United States SARS-CoV-2/human/USA/FL-BPHL-0677/2020
 ATTAAAGG1- C241T C1059T C3037T C14408T C16260T A23403G G25563T C28821A TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_510891
 2020-03-24 2020-08-07
 Portugal hCoV-19/Portugal/PT0630/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T C3037T C3045T C3140T C14408T A23403G G24077T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_510893
 2020-03-24 2020-08-07
 Portugal hCoV-19/Portugal/PT0632/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_510935
 2020-03-24 2020-08-07
 Portugal hCoV-19/Portugal/PT0676/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T T2482C C3037T T11205G C13944T C14408T A20268G A23403G G29734C TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_510936
 2020-03-24 2020-08-07
 Portugal hCoV-19/Portugal/PT0677/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T C21242T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_510970
 2020-03-24 2020-08-07
 Portugal hCoV-19/Portugal/PT0711/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3140T C14408T A23403G G24077T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_510975
 2020-03-24 2020-08-07
 Portugal hCoV-19/Portugal/PT0716/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- G662T ATG1605- C20270T G22785T A29683T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511245
 2020-03-24 2020-08-07
 Portugal hCoV-19/Portugal/PT1284/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- A2480G C2558T G11083T C14805T G26144T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511248
 2020-03-24 2020-08-07
 Portugal hCoV-19/Portugal/PT1287/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C313T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511249
 2020-03-24 2020-08-07
 Portugal hCoV-19/Portugal/PT1288/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A18298G A23403G A27751T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511250
 2020-03-24 2020-08-07
 Portugal hCoV-19/Portugal/PT1289/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511252
 2020-03-24 2020-08-07
 Portugal hCoV-19/Portugal/PT1291/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C6936T G9584T G11083T G26144T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511253
 2020-03-24 2020-08-07
 Portugal hCoV-19/Portugal/PT1292/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C3045T G11083T T14295C C16985T C19273T G26144T C26299T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511254
 2020-03-24 2020-08-07
 Portugal hCoV-19/Portugal/PT1293/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATC1- C241T A1230G C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511255
 2020-03-24 2020-08-07
 Portugal hCoV-19/Portugal/PT1294/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C3045T G11083T T14295C C16985T C19273T G26144T C27263T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511326
 2020-03-24 2020-08-07
 Portugal hCoV-19/Portugal/PT1367/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGA1- C241T C3037T C3045T C3140T C14408T A23403G G24077T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511327
 2020-03-24 2020-08-07
 Portugal hCoV-19/Portugal/PT1368/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C14408T C21575T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511328
 2020-03-24 2020-08-07
 Portugal hCoV-19/Portugal/PT1369/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511363
 2020-03-24 2020-08-07
 Portugal hCoV-19/Portugal/PT1404/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511368
 2020-03-24 2020-08-07
 Portugal hCoV-19/Portugal/PT1409/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- A2480G C2558T G11083T C14805T G26144T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511390
 2020-03-24 2020-08-07
 Portugal hCoV-19/Portugal/PT1431/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T G21761T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511392
 2020-03-24 2020-08-07
 Portugal hCoV-19/Portugal/PT1433/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C9438T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511393
 2020-03-24 2020-08-07
 Portugal hCoV-19/Portugal/PT1434/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511400
 2020-03-24 2020-08-07
 Portugal hCoV-19/Portugal/PT1441/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511402
 2020-03-24 2020-08-07
 Portugal hCoV-19/Portugal/PT1443/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T G4559A C7735T C14408T A23403G T27384C GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511425
 2020-03-24 2020-08-07
 Portugal hCoV-19/Portugal/PT1466/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C753T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511510
 2020-03-24 2020-08-08
 Portugal hCoV-19/Portugal/PT0961/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C2416T C3037T C14408T C14786T C19884T G22093A A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511723
 2020-03-24 2020-08-08
 Portugal hCoV-19/Portugal/PT1177/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C8782T T9477A C14805T A22151G G25979T T28144C C28657T C28863T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511724
 2020-03-24 2020-08-08
 Portugal hCoV-19/Portugal/PT1178/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC C29025T C29523T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511725
 2020-03-24 2020-08-08
 Portugal hCoV-19/Portugal/PT1180/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T C21242T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_514643 MT892990
 2020-03-24 2020-08-17
 United States SARS-CoV-2/human/USA/MN-MDH-1424/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1917T C3037T C14408T A23403G G25563T T26819C GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_514644 MT892991
 2020-03-24 2020-08-17
 United States SARS-CoV-2/human/USA/MN-MDH-1425/2020
 ATT1- A2480G C2558T T10480C G11083T C14805T T26130C G26144T C27559T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_514650 MT892997
 2020-03-24 2020-08-17
 United States SARS-CoV-2/human/USA/MN-MDH-1431/2020
 AT1- T383C C1238T C8782T A17858G C18060T T28144C T28924C TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_515327
 2020-03-24 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0044/2020
 ATT1- C8782T C17747T A17858G C18060T A24694T T28144C

EPI_ISL_515328
 2020-03-24 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0045/2020
 ATTA1- C241T C2416T C3037T C11651T C14408T C16111T A23403G G25563T

EPI_ISL_515329
 2020-03-24 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0046/2020
 ATTA1- C241T C2416T C3037T C11651T C14408T C16111T A23403G G25563T

EPI_ISL_515330
 2020-03-24 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0047/2020
 ATTAAA1- C241T C2416T C3037T C11651T C14408T C16111T A23403G G25563T

EPI_ISL_515331
 2020-03-24 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0048/2020
 AT1- C241T C379A C1059T C3037T C14408T A23403G G25563T

EPI_ISL_515332
 2020-03-24 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0049/2020
 ATTA1- C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_515529
 2020-03-24 2020-08-19
 Brazil hCoV-19/Brazil/SP-626/2020
 TTAAAGGTTTATACCTTCCCAGGT2- C241T C3037T C14408T A23403G G25088T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_515555
 2020-03-24 2020-08-19
 Brazil hCoV-19/Brazil/SP-154/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C12053T C14408T A23403G G25088T GGG28881AAC TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_515564
 2020-03-24 2020-08-19
 Brazil hCoV-19/Brazil/SP-187/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G G24535K G25088T T25745C GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_515565
 2020-03-24 2020-08-19
 Brazil hCoV-19/Brazil/SP-188/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G G25088T GGG28881AAC TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_515898
 2020-03-24 2020-08-20
 United States hCoV-19/USA/CA-CDPH005/2020
 ATTA1- C4540T C8782T T9477A C14805T C25685M G25979T T28144C C28311T C28657T C28863T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_515899
 2020-03-24 2020-08-20
 United States hCoV-19/USA/CA-CDPH006/2020
 ATT1- C241T G545T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_516804
 2020-03-24 2020-08-24
 Singapore hCoV-19/Singapore/832/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6310A C6312A G11083T C13730T C19524T C23929T C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_517302
 2020-03-24 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A99B3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C959T C2062T A2480G C2558T G11083T C12880T C14805T G22801R G26144T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_517303
 2020-03-24 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A99C2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G11083T C11776T C14805T C15017T G26144T

EPI_ISL_517308
 2020-03-24 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A9A1A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T A12533G C14408T A23403G C25350T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_517309
 2020-03-24 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A9A29/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T C20767T A23403G A28771W GGG28881AAC

EPI_ISL_517310
 2020-03-24 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A9A38/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A2480G C2558T G11083T T14655C C14805T G26144T G26918T

EPI_ISL_517312
 2020-03-24 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A9A56/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_517313
 2020-03-24 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A9A65/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G4436R C14408T C15237Y A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_517314
 2020-03-24 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A9A74/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_517315
 2020-03-24 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A9A83/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C2536Y C3037T C14408T C15324Y A20268G C21575Y A23403G G29734C

EPI_ISL_517319
 2020-03-24 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A9ACF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T T19869C A23403G GGG28881AAC

EPI_ISL_517320
 2020-03-24 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A9ADE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G C25350T C29870A

EPI_ISL_517323
 2020-03-24 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A9B08/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G1440A G2891R C4668T C28708T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_517324
 2020-03-24 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A9B17/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T C16289T A23403G G25429T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_517326
 2020-03-24 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A9B35/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G1440A G2891R G8785A

EPI_ISL_517327
 2020-03-24 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A9B44/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A18812C A20268G A23403G AAAAAAAAAAA29893-

EPI_ISL_517328
 2020-03-24 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A9B53/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C8782T C14599Y C17747Y A17858G C18060Y T28144C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_517329
 2020-03-24 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A9B71/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T T8168A C13862T C14408T A23403G C27294T C28836T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_517330
 2020-03-24 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A9B80/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A2480G C2558T A10323G G11083T C14805T G26144T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_517336
 2020-03-24 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A9BF9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G10097A C14408T A23403G C23731T G24386T G28580T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_517337
 2020-03-24 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A9C05/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- ATG1605- A9707G G11083T C23603T A26702G G26730T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_517338
 2020-03-24 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A9C14/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C875A C2416T C3037T C14408T C14786T G20578T A23403G G25563T

EPI_ISL_517344
 2020-03-24 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A9C7E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C3619T C14408T A20268G A23403G G29734C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_517347
 2020-03-24 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A9CAB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A7479G G11083T C14805T T17247C C25572T G26144T C28887T

EPI_ISL_517350
 2020-03-24 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A9CD8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C8814T G11083T A19476G G26144T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_517352
 2020-03-24 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A9CF6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T C15237Y A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_517358
 2020-03-24 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A9D5D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T C21058T A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_517360
 2020-03-24 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A9D99/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C13862T C14408T T14742A A23403G C25854T C28836T

EPI_ISL_517361
 2020-03-24 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A9DA8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_517363
 2020-03-24 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A9DC6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_517364
 2020-03-24 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A9DD5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1288Y C3037T G10097A C14408T A23403G C23731T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_517365
 2020-03-24 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A9DE4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G10097A C14408T A23403G C23731T GGG28881AAC

EPI_ISL_517369
 2020-03-24 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A9E4B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G1440A G2891R C10507T A17205G

EPI_ISL_517470
 2020-03-24 2020-08-24
 United Kingdom hCoV-19/England/LIVE-AA5BE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T G1264R C3037T G10097A C14408T T18573A T19989W T22573C A23403G C23731T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_517471
 2020-03-24 2020-08-24
 United Kingdom hCoV-19/England/LIVE-AA5CD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C7609T C14408T T17055C A20268G A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_517472
 2020-03-24 2020-08-24
 United Kingdom hCoV-19/England/LIVE-AA5DC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C8025T C13019Y C14408T A20268G A23403G C29108T GA29734CG

EPI_ISL_517473
 2020-03-24 2020-08-24
 United Kingdom hCoV-19/England/LIVE-AA5EB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G10097A C14408T A23403G C23731T G24386T G28580T GGG28881AAC

EPI_ISL_517475
 2020-03-24 2020-08-24
 United Kingdom hCoV-19/England/LIVE-AA606/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G10097A C14408T A23403G C23731T C25096Y GGG28881AAC

EPI_ISL_517476
 2020-03-24 2020-08-24
 United Kingdom hCoV-19/England/LIVE-AA615/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T G680A C3037T C14408T G15438T A20268G A23403G

EPI_ISL_517480
 2020-03-24 2020-08-24
 United Kingdom hCoV-19/England/LIVE-AA651/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C884T C3037T G10097A C14408T A23403G C23731T C27513Y GGG28881AAC

EPI_ISL_517482
 2020-03-24 2020-08-24
 United Kingdom hCoV-19/England/LIVE-AA67F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G10097A A12458G T13216G C14408T A23403G C23731T C26606T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_517484
 2020-03-24 2020-08-24
 United Kingdom hCoV-19/England/LIVE-AA69D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T G2293T C3037T C14408T A23403G G25993R T27348C

EPI_ISL_517485
 2020-03-24 2020-08-24
 United Kingdom hCoV-19/England/LIVE-AA6AC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G C25587T C27046T C28344A GGG28881AAC

EPI_ISL_517486
 2020-03-24 2020-08-24
 United Kingdom hCoV-19/England/LIVE-AA6BB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C7165T G10097A C14408T A23403G C23731T C26873T G28580T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_517487
 2020-03-24 2020-08-24
 United Kingdom hCoV-19/England/LIVE-AA6CA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A7479G G11083T C12242Y C14805T T17247C A22234G C25572T T25852A G26144T C28887T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_517488
 2020-03-24 2020-08-24
 United Kingdom hCoV-19/England/LIVE-AA6D9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C9996Y C14408T A23403G C23731Y C25587Y C27046Y C28344M G28580K GGG28881AAC

EPI_ISL_517489
 2020-03-24 2020-08-24
 United Kingdom hCoV-19/England/LIVE-AA6E8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C884T C3037T G10097A C14408T A23403G C23731T C27513T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_517496
 2020-03-24 2020-08-24
 United Kingdom hCoV-19/England/LIVE-AA75E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C9996T G10097A C14408T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_517500
 2020-03-24 2020-08-24
 United Kingdom hCoV-19/England/LIVE-AA79A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C8814T G11083T A19476G G26144T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_517501
 2020-03-24 2020-08-24
 United Kingdom hCoV-19/England/LIVE-AA7A9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_517505
 2020-03-24 2020-08-24
 United Kingdom hCoV-19/England/LIVE-AA7E5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C7764T G10097A C14408T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_517506
 2020-03-24 2020-08-24
 United Kingdom hCoV-19/England/LIVE-AA7F4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C4455T A10948G C14408T A23403G C27542T GGG28881AAC

EPI_ISL_517507
 2020-03-24 2020-08-24
 United Kingdom hCoV-19/England/LIVE-AA800/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_517508
 2020-03-24 2020-08-24
 United Kingdom hCoV-19/England/LIVE-AA81F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G10097A C14408T A23403G C23731T GGG28881AAC

EPI_ISL_517788 MT966110
 2020-03-24 2020-08-24
 United States SARS-CoV-2/human/USA/FL-BPHL-0898/2020
 ATTAAAGGTT1- T490A C2942T C3177T C8782T T18736C G19684T C24034T C25572T T26729C C27635T C27999T G28077C T28144C A29700G ACGCGGAGTACGATCGAGTGT29740- CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_518858 MT919997
 2020-03-24 2020-08-25
 United States SARS-CoV-2/human/USA/MN-MDH-1464/2020
 ATTAA1- C241T C1059T C3037T C3044T C14408T A23403G G25523T G25563T T27869C TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_518871 MT920010
 2020-03-24 2020-08-25
 United States SARS-CoV-2/human/USA/MN-MDH-1477/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- T490A C3177T C8782T G14186T T18736C G18781A G18984T G19684T C24034T T26729C C27635T G28077C T28144C A29700G GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_518893 MT920033
 2020-03-24 2020-08-25
 United States SARS-CoV-2/human/USA/MN-MDH-1500/2020
 ATTA1- C241T G598T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_522547
 2020-03-24 2020-08-26
 France hCoV-19/Reunion/RUN-PIMIT1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T10561C C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_522548
 2020-03-24 2020-08-26
 France hCoV-19/Reunion/RUN-PIMIT2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T10561C C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_522550
 2020-03-24 2020-08-26
 France hCoV-19/Reunion/RUN-PIMIT8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1666C C3037T C14408T T18375C A23403G A24820G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_523963
 2020-03-24 2020-08-27
 Brazil hCoV-19/Brazil/SP-165/2020
 ATTAAAGG1- A12C AC14TG C19T CA21GT C241T C1059T C3037T C14408T A23403G G25563T G29861T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_524430
 2020-03-24 2020-08-28
 United States hCoV-19/USA/NC-200414/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C2416T C3037T T12112C C14408T G21974C G23224T A23403G G25563T G26233T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_524797
 2020-03-24 2020-08-28
 Brazil hCoV-19/Brazil/MA-IEC-162157/2020
 C241T C3037T C14408T A23403G T27299C GGG28881AAC T29148C

EPI_ISL_525630
 2020-03-24 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-28157-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- T490A C3177T C8782T T18736C G19684T C24034T T26729C C27635T C28006T G28077C T28144C A29700G TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_525631
 2020-03-24 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-29389-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_526434
 2020-03-24 2020-09-01
 United Kingdom hCoV-19/England/PORT-2D13C1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C19170T G19509A A23403G G28077T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529221
 2020-03-24 2020-09-10
 United Kingdom hCoV-19/England/BIRM-61C09/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C26936T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529597
 2020-03-24 2020-09-10
 United Kingdom hCoV-19/England/BIRM-61A87/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A G13213A C14408T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529599
 2020-03-24 2020-09-10
 United Kingdom hCoV-19/England/BIRM-61B75/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C5055T G8371T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529600
 2020-03-24 2020-09-10
 United Kingdom hCoV-19/England/BIRM-61BA2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529602
 2020-03-24 2020-09-10
 United Kingdom hCoV-19/England/BIRM-61C27/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530045
 2020-03-24 2020-09-10
 Spain hCoV-19/Spain/MD-LP41/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T87G C4540T C8782T T9477A T13279C T13914C C14805T G25979T T27919C T28144C C28657T C28863T ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_530264
 2020-03-24 2020-09-11
 Australia hCoV-19/Australia/QLD984/2020/P1
 C241T C3037T C14408T T17126C A20268G A23403G C28546A G28817T

EPI_ISL_530265
 2020-03-24 2020-09-11
 Australia hCoV-19/Australia/QLD985/2020/P1
 ATTAAAGGT1- C241T C3037T C14408T A23403G G25429T G25471T C26461T

EPI_ISL_530266
 2020-03-24 2020-09-11
 Australia hCoV-19/Australia/QLD986/2020/P1
 AT1- A187G C241T G520A C3037T C14408T A23403G C25916T

EPI_ISL_534820
 2020-03-24 2020-09-14
 United Kingdom hCoV-19/England/OXON-B2E7C/2020
 C241T C3037T C10818T C14408T A23403G G24781T GGG28881AAC

EPI_ISL_534830
 2020-03-24 2020-09-14
 United Kingdom hCoV-19/England/OXON-B2F79/2020
 ATT1- C241T C3037T T11638C C14408T A23403G GGG28881AAC C29708T

EPI_ISL_534853
 2020-03-24 2020-09-14
 United Kingdom hCoV-19/England/OXON-B334F/2020
 A1515G C9223T C10277T G11083T C14805T T17247C G26144T

EPI_ISL_534857
 2020-03-24 2020-09-14
 United Kingdom hCoV-19/England/OXON-B344C/2020
 C241T C3037T C14408T A23403G G25429T C26461T

EPI_ISL_534867
 2020-03-24 2020-09-14
 United Kingdom hCoV-19/England/OXON-B3585/2020
 C241T C3037T C14408T G22592T A23403G GGG28881AAC AAAAAAAAA29895-

EPI_ISL_534870
 2020-03-24 2020-09-14
 United Kingdom hCoV-19/England/OXON-B35C1/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_534886
 2020-03-24 2020-09-14
 United Kingdom hCoV-19/England/OXON-B378F/2020
 A2480G C2558T G9188T G11083T C14805T G26144T

EPI_ISL_534890
 2020-03-24 2020-09-14
 United Kingdom hCoV-19/England/OXON-B3813/2020
 C241T G626A C1059T C3037T C5144T C14408T A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_534897
 2020-03-24 2020-09-14
 United Kingdom hCoV-19/England/OXON-B3A2C/2020
 T1600C A2480G C2558T G11083T C14805T G26144T A29320C

EPI_ISL_534953
 2020-03-24 2020-09-14
 United Kingdom hCoV-19/England/OXON-B440F/2020
 C241T A2869G C3037T C12120T C14408T A23403G GGG28881AAC C29095T T29817C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_536072
 2020-03-24 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00234853/2020
 ATTAAAGGTTTA1- C241T C1059T T1623C C3037T C6730T G14028K C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_536077
 2020-03-24 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00234878/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C14408T A23403G C28603T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_536080
 2020-03-24 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00234905/2020
 ATTAAA1- C241T C3037T C14408T A23403G TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_536082
 2020-03-24 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00234990/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C3037T C14408T C18377T A23403G G25563T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_536083
 2020-03-24 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00235020/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C8782T C17747T A17858G C18060T C18657Y T28144C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_536084
 2020-03-24 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00235027/2020
 A1- C241T C1059T C3037T G11335T C14408T A23403G G25217T G25563T C27643T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_536087
 2020-03-24 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00235132/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C3037T C14408T A23403G G25563T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_536088
 2020-03-24 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00235136/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G C25433T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_536090
 2020-03-24 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00235218/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C14408T A23403G GGG28881AAC C29247T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_536092
 2020-03-24 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00235261/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T C14408T C14676T A23403G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_536094
 2020-03-24 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00235295/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T C14408T A23403G C25613T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_536095
 2020-03-24 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00235378/2020
 ATTA1- C241T C3037T C8293T C14408T T18488C A23403G T24739C C25571T A26530R AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_536096
 2020-03-24 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00235380/2020
 ATTAAAG1- C241T C3037T C8293T C14408T T18488C A23403G T24739C A26530G GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_536097
 2020-03-24 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00235424/2020
 ATTAA1- C241T C3037T C5512T T9667C C14408T A23403G G25947T G28361A GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_536098
 2020-03-24 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00235430/2020
 ATTAAAGGTTTATACCTTCCC1- C241T C1059T C3037T A13581R C14408T A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_536099
 2020-03-24 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00235552/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C3037T C14408T A23403G GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_536101
 2020-03-24 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00235561/2020
 ATTAAAGGTTTA1- C241T C3037T C14408T G15732T T19143C A20268G A23403G TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_536102
 2020-03-24 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00235607/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T A1034G C3037T C5512T T9667C C14408T A23403G G25947T G28361A GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_536104
 2020-03-24 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00235639/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C14408T T19839C A23403G G25522A GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_536105
 2020-03-24 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00235671/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- A1515G C9223T G11083T C14805T C15654Y T17247C A17799G C23127T G26144T G29477T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_536109
 2020-03-24 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00235802/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- A1515G C9223T G11083T C14805T T17247C A17799G G26144T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_536110
 2020-03-24 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00235815/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T C14408T C15324T C19662T A23403G C25433T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_536121
 2020-03-24 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00236215/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C3037T C5512T T9667C C14408T A23403G G25947T G28361A GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_536124
 2020-03-24 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00236367/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C14408T A23403G GGG28881AAC C29421T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_536126
 2020-03-24 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00236394/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C14408T G15766T A20268G A23403G C25096T G29734C GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_536127
 2020-03-24 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00236396/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C3037T C14408T G14580T A23403G GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_536129
 2020-03-24 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00236426/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T C14408T A23403G TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_536130
 2020-03-24 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00236430/2020
 ATTAAAGGTTTATACCTTCCC1- C241T C1473T C3037T C14408T A23403G GGG28881AAC G29473A AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_536131
 2020-03-24 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00236439/2020
 ATTAAAGGTTTATACC1- C241T C3037T G11335T C14408T A23403G A23923C GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_536132
 2020-03-24 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00236526/2020
 ATTAAAGGTTTA1- C241T C3037T C14408T A20268G A23403G C28854T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_536134
 2020-03-24 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00236536/2020
 AT1- C241T C3037T C8208T C8266T G9267A T9667C C14408T A23403G G25947T G28361A GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_536137
 2020-03-24 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00236558/2020
 ATTAAAGGTTTATACC1- C8782T C17747T A17858G C18060T C18657Y T28144C TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_536138
 2020-03-24 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00236573/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T C14408T A23403G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_536139
 2020-03-24 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00236582/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- T2702W C8782T C17747T A17858G C18060T C18657T T28144C TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_536143
 2020-03-24 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00236601/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T C11916T C14408T C14925T C18998T A23403G G25563T G29540A TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_536144
 2020-03-24 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00236620/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C2388Y C3037T C8208T G9267A T9667C C11788T C14408T A23403G G25947T G28361A G28374A GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_536206
 2020-03-24 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00238246/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T C14408T C18877T A23403G G25563T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_536246
 2020-03-24 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00239391/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C3037T C14408T C15324T A23403G C25433T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_536248
 2020-03-24 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00239397/2020
 ATTA1- C241T C1059T C3037T C14408T A23403G G25217T G25563T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_536250
 2020-03-24 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00239407/2020
 ATTAAAGGTTTATAC1- A158C C241T C3037T CC14407TT C15324T A23403G C25433T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_536251
 2020-03-24 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00239412/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C3037T C14408T C15324T A23403G C25433T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_536252
 2020-03-24 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00239413/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C3037T C14408T A20268G A23403G C26313T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_537437
 2020-03-24 2020-09-16
 Spain hCoV-19/Spain/RI-CSIC-99005897/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T T6023C T13006C C14408T G17302T A23403G G25563T C25688T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_537693
 2020-03-24 2020-09-16
 Spain hCoV-19/Spain/CN-CSIC-97006476/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C8293T C8782T T9477A C12924T C14805T T14814C G25979T C26681T G27670T T28144C C28657T C28863T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_538444
 2020-03-24 2020-09-17
 Singapore hCoV-19/Singapore/917/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6312A G11083T C13730T C23422T C23929T C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538453
 2020-03-24 2020-09-17
 Singapore hCoV-19/Singapore/922/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6310A C6312A G11083T C13730T C19524T C23929T C28311T C28758T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538454
 2020-03-24 2020-09-17
 Singapore hCoV-19/Singapore/923/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C16750T A23403G G25563T G29705T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538762
 2020-03-24 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9EC1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C583T C2416T C3037T G8371T G11083T C14408T C22477T A23403G G24794K G25563T C29253T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538766
 2020-03-24 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9E94/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18657T A20268G A23403G C27442T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538773
 2020-03-24 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9DE2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538779
 2020-03-24 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9EB2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6706T C14408T A23403G C23575T G23587C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538956
 2020-03-24 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9DF1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G9479K C14408T A23403G G27589K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538957
 2020-03-24 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9EEF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539033
 2020-03-24 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8D7A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6312A A10948G C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539078
 2020-03-24 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A875E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1190T G11083T C14805T G26144T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539080
 2020-03-24 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A892B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- AAGTCATTT686- C1190T G11083T C14805T G26144T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539085
 2020-03-24 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A885B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T T22521C A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539130
 2020-03-24 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8C31/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539147
 2020-03-24 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8D89/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241Y A1904R C3037Y A3958R C5826Y C8090Y C10789Y C14408Y C17074Y A23403R G24348K C25000Y GGG28881RRS CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539173
 2020-03-24 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8703/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539553
 2020-03-24 2020-09-18
 Spain hCoV-19/Spain/CT-ISCIII-209814/2020
 C241T C1059T C3037T C3702G C12400T C14408T A23403G G25563T AAAAAAAA29896-

EPI_ISL_539554
 2020-03-24 2020-09-18
 Spain hCoV-19/Spain/CT-ISCIII-209815/2020
 C241T C3037T C14408T A20268G A23403G T25485C ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_540432 MW023388
 2020-03-24 2020-09-21
 United States SARS-CoV-2/human/USA/TN-CDC-0815/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_540433 MW023389
 2020-03-24 2020-09-21
 United States SARS-CoV-2/human/USA/TN-CDC-0818/2020
 C241T C1059T C3037T C11224T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_541144
 2020-03-24 2020-09-21
 United States hCoV-19/USA/FL-BPHL-1259/2020
 ATTA1- C241T C1059T C3037T C14408T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_547531
 2020-03-24 2020-09-24
 Netherlands hCoV-19/Netherlands/UT-RIVM-10121/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C T1606C C17410T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560593
 2020-03-24 2020-09-29
 France hCoV-19/France/HDF8236/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T C3037T C14408T G17964A T18537C A23403G C23575T CCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29835-

EPI_ISL_563820
 2020-03-24 2020-09-30
 Australia hCoV-19/Australia/VIC13741/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- A2480G C2558T C7279T G11083T C14805T G26144T C27208T TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_563832
 2020-03-24 2020-09-30
 Australia hCoV-19/Australia/VIC13777/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C1471Y C6310A C6312A G11083T C13730T G18756T C19524T C23929T C28311T TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

MT263459
 2020-03-24 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW380/2020
 AT1CA A4T C241T C1059T C3037T C14408T A23403G G25563T ACT27246CTC T27255G G27337D A27340C T27342G A27344G C27964T -29904ANAAAAAAANGTC

MT459986
 2020-03-24 2020-05-12
 United States SARS-CoV-2/human/GUM/GU-NHG-02/2020
 C6312A G11083T C13730T C23929T C28311T

MT477844
 2020-03-24 2020-05-14
 United States SARS-CoV-2/human/USA/AK040/2020
 ATTAAAGGTTTA1- C241T C1059T C3037T C3293T C14408T A21825C A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

MT477853
 2020-03-24 2020-05-14
 United States SARS-CoV-2/human/USA/AK118/2020
 ATTAAAGGTTTAT1- C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

MT477854
 2020-03-24 2020-05-14
 United States SARS-CoV-2/human/USA/AK122/2020
 ATTAAAGGTTTATACCTTCC1- C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T C28606T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

MT509458
 2020-03-24 2020-05-22
 United States SARS-CoV-2/human/USA/MD-HP00037/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A20755C A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT509462
 2020-03-24 2020-05-22
 United States SARS-CoV-2/human/USA/MD-HP00044/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T9172C A10948G C14408T A23403G G26730T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706150
 2020-03-24 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-29/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G15760A A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706153
 2020-03-24 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-32/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11417T T14073C C14408T A23403G A23947G A27338G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706156
 2020-03-24 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-35/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11417T T14073C C14408T A23403G A23947G C24310T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706161
 2020-03-24 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-40/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11417T T14073C C14408T A23403G A23947G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706180
 2020-03-24 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-59/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C13019T C16457T C17747T A17858G C18060T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706184
 2020-03-24 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-63/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706185
 2020-03-24 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-64/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11417T T14073C C14408T A23403G A23947G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706187
 2020-03-24 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-66/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T G16381A T17877C C20316T G25500T T28144C G28878A G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706189
 2020-03-24 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-68/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706192
 2020-03-24 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-71/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T G16381A T17877C C20316T G25500T T28144C G28878A G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706194
 2020-03-24 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-73/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T G16381A T17877C C20316T G25500T T28144C G28878A G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706199
 2020-03-24 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-78/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A263G C1191T C3037T C14408T C20325T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706201
 2020-03-24 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-80/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3871T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706205
 2020-03-24 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-84/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C14408T T15366C C18481T A23403G G25563T G25687A C29296T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706245
 2020-03-24 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-252/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C8782T T18736C G19684T C24034T T26729C C27635T G28077C T28144C A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706322
 2020-03-24 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-194/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706323
 2020-03-24 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-195/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C14408T A23403G A23592G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706325
 2020-03-24 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-197/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706326
 2020-03-24 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-198/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25793T T27299C GGG28881AAC T29148C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706327
 2020-03-24 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-199/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C3736T C8655T G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706328
 2020-03-24 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-200/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C11916T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706338
 2020-03-24 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-210/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T21024C G29711T A29725G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT810523
 2020-03-24 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1654-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T G11138T C14408T C16762T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810532
 2020-03-24 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1667-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T A8252G C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810533
 2020-03-24 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1668-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810537
 2020-03-24 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1672-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T C16762T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810540
 2020-03-24 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1675-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810559
 2020-03-24 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0426-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810919
 2020-03-24 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0181-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A23403G C23595T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810927
 2020-03-24 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0192-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T C16762T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810930
 2020-03-24 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0197-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T A4198T C14408T T19791C A23403G G25563T C25710T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810952
 2020-03-24 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0240-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T G10533A C14408T C16289T C16762T A23403G G25563T C29460A CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810953
 2020-03-24 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0245-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811171
 2020-03-24 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0111-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C7945T CC14407TT C17850T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT956911
 2020-03-24 2020-09-03
 Spain SARS-CoV-2/human/ESP/HUD-70064673/2020
 C8782T T9477A C14805T T28144C C28657T C28863T

MW023404
 2020-03-24 2020-09-21
 United States SARS-CoV-2/human/USA/FL-BPHL-1259/2020
 ATTA1- C241T C1059T C3037T C14408T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

NMDC60013207
 2020-03-24 2020-06-01
 China hCoV-19/Guangzhou/ID059/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12053T C14408T A23403G G25088T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

NMDC60013250
 2020-03-24 2020-06-01
 China hCoV-19/Guangzhou/ID032/2020
 ATT1- A4T G2891A A23403G G28883C G29868C

NMDC60013271
 2020-03-24 2020-06-01
 China hCoV-19/Guangzhou/ID034/2020
 A1- T3G G8171A G11083T C14805T T17247C G26144T A29850G TG29867AA

NMDC60013272
 2020-03-24 2020-06-01
 China hCoV-19/Guangzhou/ID035/2020
 TTAAAGGT2- G8171A G11083T C14805T T17247C G26144T

NMDC60013273
 2020-03-24 2020-06-01
 China hCoV-19/Guangzhou/ID033/2020
 ATTAAAGGTTTA1- G11083T C14805T G26144T

NMDC60013282
 2020-03-24 2020-06-01
 China hCoV-19/Guangzhou/ID056/2020
 A1- A4T C8782T T28144C G28878A G29742A A29850W

EPI_ISL_418303
 2020-03-25 2020-03-25
 United Kingdom hCoV-19/England/SHEF-BFEAC/2020
 A1515G C9223T G11083T C14805T T17247C G26144T A26392G

EPI_ISL_418305
 2020-03-25 2020-03-25
 United Kingdom hCoV-19/England/SHEF-BFED9/2020
 C241T C3037T C14408T A23403G T27222C GGG28881AAC

EPI_ISL_418306
 2020-03-25 2020-03-25
 United Kingdom hCoV-19/England/SHEF-BFEE8/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC C29627T

EPI_ISL_418318
 2020-03-25 2020-03-25
 United Kingdom hCoV-19/England/SHEF-BFFB8/2020
 C241T C3037T C14408T C18713T A23403G GGG28881AAC

EPI_ISL_418320
 2020-03-25 2020-03-25
 United Kingdom hCoV-19/England/SHEF-BFFD6/2020
 A1350T A2480G C2558T G11083T C14805T T24436C G26144T

EPI_ISL_420023 MT322420
 2020-03-25 2020-04-08
 United States SARS-CoV-2/human/USA/VA-DCLS-0042/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T A23403G C28720T GGG28881AAC G29868R C29870A

EPI_ISL_420163
 2020-03-25 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C086E/2020
 ATG1605- T4949C C16887T

EPI_ISL_420165
 2020-03-25 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C08C8/2020
 C241T C3037T C14408T C18713T A23403G GGG28881AAC

EPI_ISL_420166
 2020-03-25 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C0813/2020
 C241T C3037T T7438C G10097A C14408T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_420167
 2020-03-25 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C0804/2020
 C241T C3037T C14408T C18713T A23403G GGG28881AAC

EPI_ISL_420225
 2020-03-25 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C052B/2020
 C241T T3022A C3037T C14408T A23403G GGG28881AAC

EPI_ISL_420231
 2020-03-25 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C0691/2020
 C1457T A2480G C2558T G11083T C14805T G26144T C26340T

EPI_ISL_420232
 2020-03-25 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C0682/2020
 A2480G C2558T C8078T C8917T G11083T C14805T G26144T

EPI_ISL_420233
 2020-03-25 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C050D/2020
 C241T C3037T C14408T G17964A A23403G C23575T G24959T

EPI_ISL_420243
 2020-03-25 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C05FE/2020
 C241T C3037T C14408T G15780T A23403G

EPI_ISL_420247
 2020-03-25 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C0585/2020
 G11083T C14805T C16887T G26144T G28842T

EPI_ISL_420248
 2020-03-25 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C06BF/2020
 C241T C3037T C14408T A20268G A23403G G28655T G29734C

EPI_ISL_420250
 2020-03-25 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C06DD/2020
 C241T C3037T C14408T C15324T A23403G C28310T

EPI_ISL_420251
 2020-03-25 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C0673/2020
 ATG1605-

EPI_ISL_420254
 2020-03-25 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C01EB/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_420255
 2020-03-25 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C0163/2020
 G11083T C14805T G26144T

EPI_ISL_420261
 2020-03-25 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C0725/2020
 C241T C3037T T7438C G10097A C14408T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_420379
 2020-03-25 2020-04-06
 Belgium hCoV-19/Belgium/RGE-0325122/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2035T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420380
 2020-03-25 2020-04-06
 Belgium hCoV-19/Belgium/DPG-0325123/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G A28765G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420384
 2020-03-25 2020-04-06
 Belgium hCoV-19/Belgium/NML-0325127/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420385
 2020-03-25 2020-04-06
 Belgium hCoV-19/Belgium/EC-0325128/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8394T C14408T C15277T C15324T G21641A T22020C A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420394
 2020-03-25 2020-04-06
 Belgium hCoV-19/Belgium/OS-0325137/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T C14408T C15277T C15324T A23403G G29234C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_420400
 2020-03-25 2020-04-06
 Belgium hCoV-19/Belgium/VT-0325143/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420402
 2020-03-25 2020-04-06
 Belgium hCoV-19/Belgium/GJJ-0325145/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T A28108G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420403
 2020-03-25 2020-04-06
 Belgium hCoV-19/Belgium/DVG-0325146/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T A11991G C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420404
 2020-03-25 2020-04-06
 Belgium hCoV-19/Belgium/PC-0325147/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T19839C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420405
 2020-03-25 2020-04-06
 Belgium hCoV-19/Belgium/LJ-0325148/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A11839G C14408T T19839C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420409
 2020-03-25 2020-04-06
 Belgium hCoV-19/Belgium/ZF-0325152/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G C25433T G29425T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420410
 2020-03-25 2020-04-06
 Belgium hCoV-19/Belgium/VPMV-0325153/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A11839G C14408T T19839C A23403G G25489T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420413
 2020-03-25 2020-04-06
 Belgium hCoV-19/Belgium/DJMG-0325156/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C9891T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420414
 2020-03-25 2020-04-06
 Belgium hCoV-19/Belgium/DRV-0325157/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4255T C14408T A23403G A26530G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420415
 2020-03-25 2020-04-06
 Belgium hCoV-19/Belgium/DCS-0325158/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6573T C8394T C14408T C15277T C15324T C19032T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420419
 2020-03-25 2020-04-06
 Belgium hCoV-19/Belgium/VLG-0325162/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G8102T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420422
 2020-03-25 2020-04-06
 Belgium hCoV-19/Belgium/JJC-0325165/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G10098A G11083T C11580T C14805T T17247C G26144T G29348T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420423
 2020-03-25 2020-04-06
 Belgium hCoV-19/Belgium/PJM-0325166/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4795T G10073A C12743A C14408T C15324T G23401T A23403G G28690T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420428
 2020-03-25 2020-04-06
 Belgium hCoV-19/Belgium/VM-0325171/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G4728T C14408T C16192T A23403G G25563T G29291A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420435
 2020-03-25 2020-04-06
 Belgium hCoV-19/Belgium/CJE-0325178/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G24794T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420437
 2020-03-25 2020-04-06
 Belgium hCoV-19/Belgium/DMM-0325180/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T T17247C T23182C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420438
 2020-03-25 2020-04-06
 Belgium hCoV-19/Belgium/BJ-0325181/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420439
 2020-03-25 2020-04-06
 Belgium hCoV-19/Belgium/PC-0325182/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T19839C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420440
 2020-03-25 2020-04-06
 Belgium hCoV-19/Belgium/BS-0325183/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G G29425T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420879
 2020-03-25 2020-04-07
 Australia hCoV-19/Australia/QLDID931/2020
 ATTAAA1- C1670T C8782T C17747T A17858G C18060T C23430T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_421285
 2020-03-25 2020-04-07
 United States hCoV-19/USA/WI-UW-27/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11417T T14073C C14408T A23403G A23947G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421286
 2020-03-25 2020-04-07
 United States hCoV-19/USA/WI-UW-28/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C8782T C9113T T18736C C21648T C24034T T26729C C27635T G28077C T28144C A29567C A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421289
 2020-03-25 2020-04-07
 United States hCoV-19/USA/WI-UW-31/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421294
 2020-03-25 2020-04-07
 United States hCoV-19/USA/WI-UW-36/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3871T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421296
 2020-03-25 2020-04-07
 United States hCoV-19/USA/WI-UW-38/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T G16381A T17877C C20316T G25500T G26211T T28144C G28878A G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421299
 2020-03-25 2020-04-07
 United States hCoV-19/USA/WI-UW-41/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G6884T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421306
 2020-03-25 2020-04-07
 United States hCoV-19/USA/WI-UW-48/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G6884T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421307
 2020-03-25 2020-04-07
 United States hCoV-19/USA/WI-UW-49/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3871T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421308
 2020-03-25 2020-04-07
 United States hCoV-19/USA/WI-UW-50/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T G16381A T17877C C20316T G25500T C26124T T28144C G28878A G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421320
 2020-03-25 2020-04-07
 United States hCoV-19/USA/WI-UW-62/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C11224T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421325
 2020-03-25 2020-04-07
 United States hCoV-19/USA/WI-UW-67/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T G16381A T17877C C20316T G25500T T28144C G28878A G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421330
 2020-03-25 2020-04-07
 United States hCoV-19/USA/WI-UW-72/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421340
 2020-03-25 2020-04-07
 United States hCoV-19/USA/WI-UW-81/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3871T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421341
 2020-03-25 2020-04-07
 United States hCoV-19/USA/WI-UW-82/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421342
 2020-03-25 2020-04-07
 United States hCoV-19/USA/WI-UW-83/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T T27447C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421653
 2020-03-25 2020-04-09
 Latvia hCoV-19/Latvia/01/2020
 C241T C3037T C14408T C15324T A23403G A24241T C28706T

EPI_ISL_421654
 2020-03-25 2020-04-09
 Latvia hCoV-19/Latvia/02/2020
 ATG1605- T6163A C12923A C13430T C19366T C23127T T28110C

EPI_ISL_421655
 2020-03-25 2020-04-09
 Latvia hCoV-19/Latvia/03/2020
 C241T G1440A C3037T

EPI_ISL_421656
 2020-03-25 2020-04-09
 Latvia hCoV-19/Latvia/04/2020
 G1440A G2891A G5704A C6606T C6628T A6944G C17766T A19126G

EPI_ISL_421776
 2020-03-25 2020-04-09
 United Kingdom hCoV-19/England/201360297/2020
 C241T C3037T C11681T C14408T A23403G C25350Y C27005T

EPI_ISL_421779
 2020-03-25 2020-04-09
 United Kingdom hCoV-19/England/201360300/2020
 C241T C2416T C3037T C14408T C14786T G20578T A23403G T25485C G25563T

EPI_ISL_421781
 2020-03-25 2020-04-09
 United Kingdom hCoV-19/England/201360499/2020
 C241T C3037T C14408T A23403G C23575T G23587C

EPI_ISL_421782
 2020-03-25 2020-04-09
 United Kingdom hCoV-19/England/201360506/2020
 C241T C3037T C14408T A23403G G25785T GGG28881AAC

EPI_ISL_421783
 2020-03-25 2020-04-09
 United Kingdom hCoV-19/England/201360508/2020
 C241T C3037T C14408T A23403G G25785T GGG28881AAC G29449T

EPI_ISL_421785
 2020-03-25 2020-04-09
 United Kingdom hCoV-19/England/201361008/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_421790
 2020-03-25 2020-04-09
 United Kingdom hCoV-19/England/201361022/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_421804
 2020-03-25 2020-04-09
 United Kingdom hCoV-19/England/201380042/2020
 C241T C3037T C14408T A23403G C28377Y GGG28881AAC

EPI_ISL_421806
 2020-03-25 2020-04-09
 United Kingdom hCoV-19/England/201380049/2020
 A2480G C2558T G11083T C14805T C16329T G26144T

EPI_ISL_421807
 2020-03-25 2020-04-09
 United Kingdom hCoV-19/England/201380050/2020
 C241T C3037T C9763T C14408T A23403G C25624T C26002A GGG28881AAC

EPI_ISL_421809
 2020-03-25 2020-04-09
 United Kingdom hCoV-19/England/201380054/2020
 C241T C3037T C7998Y C14408T A23403G GGG28881AAC

EPI_ISL_421810
 2020-03-25 2020-04-09
 United Kingdom hCoV-19/England/201380055/2020
 C241T C3037T G7798T C8025T C14408T A20268G A23403G G29734C

EPI_ISL_421811
 2020-03-25 2020-04-09
 United Kingdom hCoV-19/England/201380056/2020
 C241T C3037T C8025T C14408T A20268G A23403G G29734C

EPI_ISL_421818
 2020-03-25 2020-04-09
 United Kingdom hCoV-19/England/201380070/2020
 C241T C3037T A10948G C14408T A23403G GGG28881AAC

EPI_ISL_421822
 2020-03-25 2020-04-09
 United Kingdom hCoV-19/England/201380217/2020
 C241T C3037T C14408T A23403G C27679T GGG28881AAC

EPI_ISL_421823
 2020-03-25 2020-04-09
 United Kingdom hCoV-19/England/201380221/2020
 C241T C3037T C14408T A23403G C27679T GGG28881AAC

EPI_ISL_421824
 2020-03-25 2020-04-09
 United Kingdom hCoV-19/England/201380228/2020
 C241T C3037T T8777C G10097A C14408T A23403G C23731T GGG28881AAC

EPI_ISL_421825
 2020-03-25 2020-04-09
 United Kingdom hCoV-19/England/201380229/2020
 C241T C3037T T8777C G10097A C14408T A23403G C23731T GGG28881AAC

EPI_ISL_422029
 2020-03-25 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-25F44/2020
 C241T C3037T C14408T C16289T A23403G G25429T

EPI_ISL_422041
 2020-03-25 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-25C3E/2020
 C241T C3037T C6990T C14408T A23403G

EPI_ISL_422055
 2020-03-25 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-25E47/2020
 A1- G1440A G2891A C25669T G28851T

EPI_ISL_422063
 2020-03-25 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-25B6E/2020
 ATTAAAGGTTTATACC1- A2480G C2558T C11074T G11083T C14805T G26144T

EPI_ISL_422064
 2020-03-25 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-25C01/2020
 ATTA1- C241T C3037T C6990T C14408T A23403G

EPI_ISL_422078
 2020-03-25 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-26013/2020
 A1- G1440A G2891A C25669T G28851T

EPI_ISL_422085
 2020-03-25 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-25FAE/2020
 C241T C3037T C14408T A20268G A23403G

EPI_ISL_422094
 2020-03-25 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-2617A/2020
 ATTAAAGGTTTATACCT1- C241T G1719R C3037T T3100G G8174A G10097A C14408T A23403G C23731T C24759A G25947T GGG28881AAC C29253T

EPI_ISL_422106
 2020-03-25 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-260F5/2020
 ATTA1- G1440A G2891A C25669T G28851T A29467T

EPI_ISL_422107
 2020-03-25 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-25FF9/2020
 AT1- C241T C3037T T4186C G11801A C14408T T19839C A23403G G25552T GGG28881AAC AAAAAA29898-

EPI_ISL_422108
 2020-03-25 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-2581C/2020
 AT1- A2480G C2558T G11083T T13599C C14805T G25455T G26144T

EPI_ISL_422110
 2020-03-25 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-260D7/2020
 AT1- C241T C3037T C14408T A23403G AAAAAAAAA29895-

EPI_ISL_422114
 2020-03-25 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-25BC8/2020
 G11083T C14805T T17247C G17443T G22708T G26144T A29903-

EPI_ISL_422117
 2020-03-25 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-25F71/2020
 C241T C3037T C10401Y C14408T A20268G A23403G

EPI_ISL_422118
 2020-03-25 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-25F9F/2020
 C241T C3037T C14408T A20268G A23403G

EPI_ISL_422437
 2020-03-25 2020-04-10
 Italy hCoV-19/Italy/VR_20COV21-26/2020
 ATTAAAGG1- C241T C3037T C14408T A23403G GGG28881AAC TGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29785-

EPI_ISL_422438
 2020-03-25 2020-04-10
 Italy hCoV-19/Italy/VR_20COV21-37/2020
 ATTAAAGGTTTATACCT1- C98T C241T C3037T C14408T A23403G TGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29785-

EPI_ISL_422732 LR877978
 2020-03-25 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_197/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G3122T C14408T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422735 LR877976
 2020-03-25 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_200/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A24862G G26660T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422737 LR877909
 2020-03-25 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_202/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2543G C3037T C14408T A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422738 LR877894
 2020-03-25 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_203/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422741 LR877908
 2020-03-25 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_206/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T T18837C A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422742 LR877895
 2020-03-25 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_207/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422745 LR877905
 2020-03-25 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_210/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C11109T C14408T G16852T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422746 LR877891
 2020-03-25 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_211/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- G13309T C17410T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422748 LR877901
 2020-03-25 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_213/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T A28305G GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422895 LR877974
 2020-03-25 2020-04-11
 Netherlands hCoV-19/Netherlands/NoordHolland_4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_423078
 2020-03-25 2020-04-12
 United Kingdom hCoV-19/England/20134010904/2020
 A2480G C2558T G11083T C14805T G26144T

EPI_ISL_423119
 2020-03-25 2020-04-12
 United Kingdom hCoV-19/England/20134022104/2020
 C241T C3037T A10874R C14408T A19336M C23248Y A23403G

EPI_ISL_423215
 2020-03-25 2020-04-12
 United Kingdom hCoV-19/England/20136012004/2020
 G8A A2480G C2558T G11083T C14805T G26144T

EPI_ISL_423218
 2020-03-25 2020-04-12
 United Kingdom hCoV-19/England/201360126/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_423219
 2020-03-25 2020-04-12
 United Kingdom hCoV-19/England/201360127/2020
 C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_423223
 2020-03-25 2020-04-12
 United Kingdom hCoV-19/England/201360136/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_423242
 2020-03-25 2020-04-12
 United Kingdom hCoV-19/England/201360210/2020
 A2480G C2558T G11083T C14805T G26144T

EPI_ISL_423243
 2020-03-25 2020-04-12
 United Kingdom hCoV-19/England/201360211/2020
 C241T C3037T C14408T A23403G G27281T GGG28881AAC

EPI_ISL_423250
 2020-03-25 2020-04-12
 United Kingdom hCoV-19/England/201360220/2020
 A2480G C2558T T6760C G11083T G11417K C14805T G26144T G28028K

EPI_ISL_423251
 2020-03-25 2020-04-12
 United Kingdom hCoV-19/England/201360221/2020
 A2480G C2558T G11083T T14145C C14805T G26144T

EPI_ISL_423253
 2020-03-25 2020-04-12
 United Kingdom hCoV-19/England/201360223/2020
 A2480G C2558T G11083T C14786T C14805T G26144T

EPI_ISL_423262
 2020-03-25 2020-04-12
 United Kingdom hCoV-19/England/201360277/2020
 C241T G1895K C2416T C3037T A13712R C14408T C14786T G20578T A23403G T25485C G25563T

EPI_ISL_423264
 2020-03-25 2020-04-12
 United Kingdom hCoV-19/England/201360317/2020
 C241T G1895K C2416T C3037T T11027Y C14408T C14786T G20578T A23403G T25485C G25563T

EPI_ISL_424545
 2020-03-25 2020-04-13
 Iceland hCoV-19/Iceland/524/2020
 C241T C3037T T11959C C14408T A20268G G21204T A23403G

EPI_ISL_424551
 2020-03-25 2020-04-13
 Iceland hCoV-19/Iceland/530/2020
 A7479G G11083T C14805T T17247C C25572T G26144T C28887T

EPI_ISL_425052
 2020-03-25 2020-04-14
 Belgium hCoV-19/Belgium/UGent-8/2020
 C241T C3037T C14408T T19839C A23403G C24099T C26882T GGG28881AAC

EPI_ISL_425053
 2020-03-25 2020-04-14
 Belgium hCoV-19/Belgium/UGent-9/2020
 G11083T C14805T T17247C G26144T

EPI_ISL_425054
 2020-03-25 2020-04-14
 Belgium hCoV-19/Belgium/UGent-10/2020
 T514C ATG1605-

EPI_ISL_425056
 2020-03-25 2020-04-14
 Belgium hCoV-19/Belgium/UGent-15/2020
 T514C ATG1605- G14622T C17410T T18723C G19891T

EPI_ISL_425060
 2020-03-25 2020-04-14
 Belgium hCoV-19/Belgium/UGent-20/2020
 T514C ATG1605- G14622T C17410T T18723C

EPI_ISL_425061
 2020-03-25 2020-04-14
 Belgium hCoV-19/Belgium/UGent-21/2020
 T514C ATG1605- G14622T C17410T T18723C

EPI_ISL_425064
 2020-03-25 2020-04-14
 Belgium hCoV-19/Belgium/UGent-25/2020
 C241T C3037T C14408T A23403G

EPI_ISL_425175
 2020-03-25 2020-04-14
 United States hCoV-19/USA/WI-UW-118/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425210
 2020-03-25 2020-04-14
 Spain hCoV-19/Spain/Valencia86/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C29144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425561
 2020-03-25 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10E55D/2020
 G1440A G2891A C10507T A26612T

EPI_ISL_425562
 2020-03-25 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10E57B/2020
 G3052A C6027T G11083T C14805T T18771C G25352T G26144T

EPI_ISL_425593
 2020-03-25 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10E7A2/2020
 C241T C3037T C14408T A23403G C25350T

EPI_ISL_425792
 2020-03-25 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR632/2020
 ATG1605- C12710T C28854T

EPI_ISL_425793
 2020-03-25 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR634/2020
 T490A C3177T C6040T C8782T G12478A T18736C C24034T C25665T T26729C G28077C T28144C C28896G A29700G

EPI_ISL_425794
 2020-03-25 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR635/2020
 C241T T1455C C3037T C10798A C13862T C14408T A23403G C28836T

EPI_ISL_425933
 2020-03-25 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB189/2020
 C241T C3037T T3118C C14408T C16289T A23403G G25429T

EPI_ISL_425937
 2020-03-25 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB194/2020
 C241T C3037T C14408T A23403G C25433T G29405A

EPI_ISL_425939
 2020-03-25 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB198/2020
 C241T C3037T C14408T T16203C A20268G A23403G G29734C

EPI_ISL_426083 MT345806
 2020-03-25 2020-04-14
 United States SARS-CoV-2/human/USA/WA-UW-2087/2020
 ATTAAAGGTTTATA1- C16G C19A AAC34TTY C241T C1059T C3037T C14408T A23403G G25563T C28826T -29904AAANAAAA

EPI_ISL_426085 MT345812
 2020-03-25 2020-04-14
 United States SARS-CoV-2/human/USA/WA-UW-2094/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTG1- C241T C1059T C3037T C14408T A23403G G25563T G29553A -29904TANANATANANAAA

EPI_ISL_426086 MT345821
 2020-03-25 2020-04-14
 United States SARS-CoV-2/human/USA/WA-UW-2100/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCC1- C1059T C3037T C6255T C14408T C21077T A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_426090 MT345819
 2020-03-25 2020-04-14
 United States SARS-CoV-2/human/USA/WA-UW-2112/2020
 ATTAAAGGTTT1- C241T C1059T A2651G C3037T C6040T C14408T A23403G G25563T -29904AAAAAAAA

EPI_ISL_426091 MT345809
 2020-03-25 2020-04-14
 United States SARS-CoV-2/human/USA/WA-UW-2119/2020
 A1- C241T C1059T C3037T C14408T A23403G G25563T G29553A AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_426092 MT345801
 2020-03-25 2020-04-14
 United States SARS-CoV-2/human/USA/WA-UW-2131/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAA1- C241T A761G C1059T C3037T C14408T G15760A A23403G G25563T AAAA29900-

EPI_ISL_426093 MT345808
 2020-03-25 2020-04-14
 United States SARS-CoV-2/human/USA/WA-UW-2132/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGT1- C241T C1059T C3037T C14408T A23403G G25563T C27804T G29553A AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_426095 MT345824
 2020-03-25 2020-04-14
 United States SARS-CoV-2/human/USA/WA-UW-2140/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCG1- C241T C1059T C3037T C8078T C14408T A23403G G25563T G29553A AAAAAAAAAA29894-

EPI_ISL_426096 MT345822
 2020-03-25 2020-04-14
 United States SARS-CoV-2/human/USA/WA-UW-2141/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGAT1- G1598A C6310T C7267T C8782T C17747T A17858G C18060T A18802G G27327T T28144C G28378T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_426097 MT345829
 2020-03-25 2020-04-14
 United States SARS-CoV-2/human/USA/WA-UW-2142/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- TCT83CTC GG90-C T150C T153G C241T C379A C1059T T2244C C3037T A10761G C14408T A23403G G25563T TG29867AA C29870A -29904AAAAAAAAAAAAAA

EPI_ISL_426098 MT345826
 2020-03-25 2020-04-14
 United States SARS-CoV-2/human/USA/WA-UW-2144/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- AACC34TTTA C241T C1059T C3037T C14408T A23403G G25563T GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_426099 MT345825
 2020-03-25 2020-04-14
 United States SARS-CoV-2/human/USA/WA-UW-2145/2020
 ATTAAAGGTTTATACCTTCCCAGG1- A31T AACC34TTTA C241T C1059T C3037T C14408T A23403G G25563T AAAA29900-

EPI_ISL_426100 MT345827
 2020-03-25 2020-04-14
 United States SARS-CoV-2/human/USA/WA-UW-2146/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- AACC34CTTT C241T C379A C1059T T2244C C3037T C14408T A23403G G25563T G29864A TG29867AA C29870A

EPI_ISL_426101 MT345830
 2020-03-25 2020-04-14
 United States SARS-CoV-2/human/USA/WA-UW-2149/2020
 ATTAAAGGTTTATAC1- AACC34TTTA C241T C1059T C3037T C9951T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_426102 MT345823
 2020-03-25 2020-04-14
 United States SARS-CoV-2/human/USA/WA-UW-2164/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C8782T C12025T C17747T A17858G C18060T T28144C G28703T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_426107 MT345832
 2020-03-25 2020-04-14
 United States SARS-CoV-2/human/USA/WA-UW-2181/2020
 ATTAAAGGTTTATACCTTCCCAG1- A31T AAC34TTT A4236G A8031G G11083T C14805T T25655C G26144T G27382T AAAAAAAAAAA29893-

EPI_ISL_426111 MT345833
 2020-03-25 2020-04-14
 United States SARS-CoV-2/human/USA/WA-UW-2203/2020
 ATTAAAGGTT1- C8782T C17747T A17858G C18060T T28144C

EPI_ISL_426112 MT345865
 2020-03-25 2020-04-14
 United States SARS-CoV-2/human/USA/WA-UW-2208/2020
 ATTAAAGGTTTATACCT1- AACC34TTTH C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAA29886-

EPI_ISL_426113 MT345861
 2020-03-25 2020-04-14
 United States SARS-CoV-2/human/USA/WA-UW-2212/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- A35W C241T C1059T C3037T C3698A C14408T A23403G G25563T G29553A AAAA29900-

EPI_ISL_426114 MT345862
 2020-03-25 2020-04-14
 United States SARS-CoV-2/human/USA/WA-UW-2213/2020
 A1- T3C AGGTTTATACCTTC6- GG23- TC232GA AGG235- C241T C1059T C3037T C14408T A23403G G25563T -29904ADAGV

EPI_ISL_426115 MT345860
 2020-03-25 2020-04-14
 United States SARS-CoV-2/human/USA/WA-UW-2214/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTT1- A229C TCT232CAC C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAA29896-

EPI_ISL_426116 MT345859
 2020-03-25 2020-04-14
 United States SARS-CoV-2/human/USA/WA-UW-2215/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAG1- C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_426117 MT345856
 2020-03-25 2020-04-14
 United States SARS-CoV-2/human/USA/WA-UW-2218/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- AAC34WWY C241T C3037T C14408T C18877T A23403G G25563T -29904ANANANANA

EPI_ISL_426118 MT345854
 2020-03-25 2020-04-14
 United States SARS-CoV-2/human/USA/WA-UW-2219/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- AACC34HTTH C241T C1059T C3037T C6040T C14408T A23403G G25563T AAAAAAAAAAA29893-

EPI_ISL_426120 MT345853
 2020-03-25 2020-04-14
 United States SARS-CoV-2/human/USA/WA-UW-2230/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C8782T C17550T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_426121 MT345851
 2020-03-25 2020-04-14
 United States SARS-CoV-2/human/USA/WA-UW-2232/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGA1- C3037T C14408T C18877T A23403G G25563T AAAAAAAAA29895-

EPI_ISL_426127 MT345835
 2020-03-25 2020-04-14
 United States SARS-CoV-2/human/USA/WA-UW-2244/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- ACC35TYH C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T C29250T -29904ATNNA

EPI_ISL_426128 MT345855
 2020-03-25 2020-04-14
 United States SARS-CoV-2/human/USA/WA-UW-2245/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T AAGTCATTT686- C1059T C3037T C14408T G19656T A23403G C24784T G25563T A26433G AAAA29900-

EPI_ISL_426314
 2020-03-25 2020-04-15
 United States hCoV-19/USA/NY-Wadsworth-29275-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426532
 2020-03-25 2020-04-17
 United States hCoV-19/USA/AZ-TG270152/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426536
 2020-03-25 2020-04-17
 United States hCoV-19/USA/AZ-TG271591/2020
 C241T C1059T C3037T C14408T C21767T A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426545
 2020-03-25 2020-04-17
 United States hCoV-19/USA/AZ-TG271884/2020
 C241T C1059T C3037T C14408T C17825T A23403G G25563T G25767C C27964T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426558
 2020-03-25 2020-04-17
 United States hCoV-19/USA/AZ-TG273280/2020
 C241T C1059T C3037T C14408T A23403G G25563T G28621A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426559
 2020-03-25 2020-04-17
 United States hCoV-19/USA/AZ-TG273282/2020
 C241T C1059T C3037T C14408T A23403G G25563T G28621A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426636 MT641663
 2020-03-25 2020-04-17
 Australia SARS-CoV-2/human/AUS/NT19/2020
 C241T C3037T C14408T A20268G A23403G

EPI_ISL_426709 MT451286
 2020-03-25 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC407/2020
 C1076T G1397A G3564K G11083T G22661T C27964T T28688C G29742T

EPI_ISL_426800 MT451368
 2020-03-25 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC534/2020
 C241T C527T C3037T T7438C C14408T A23403G A26864G C29353T

EPI_ISL_426801
 2020-03-25 2020-04-17
 Australia hCoV-19/Australia/VIC535/2020
 ATG1605- C5007T C8917T C17898T

EPI_ISL_426810 MT451375
 2020-03-25 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC547/2020
 C1076T G1397A T9037C G11083T C11832T C27964T T28688C G29742T

EPI_ISL_426811 MT451376
 2020-03-25 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC548/2020
 C241T C3037T G7042T C14408T A23403G GGG28881AAC

EPI_ISL_426813 MT451379
 2020-03-25 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC551/2020
 C241T C1059T C3037T G3564T C14408T A23403G G24933T G25563T G25593C

EPI_ISL_426816 MT451381
 2020-03-25 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC555/2020
 C241T ATG518- C1059T C3037T C11916T C14408T C19018T A23403G G25563T

EPI_ISL_426819 MT451383
 2020-03-25 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC558/2020
 C241T C1059T C3037T C14408T C20148T A23403G G25563T

EPI_ISL_426822 MT451386
 2020-03-25 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC561/2020
 C241T C3037T G3564T C14408T C20762T C21575T A23403G GGG28881AAC

EPI_ISL_426825 MT451389
 2020-03-25 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC565/2020
 C4540T C8782T T9477A C14805T G25979T T28144C C28253G C28311T C28657T C28863T

EPI_ISL_426826 MT451390
 2020-03-25 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC566/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_426828 MT641693
 2020-03-25 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC568/2020
 G374A G3564T C6936T C8782T C17747T A17858G C18060T A20916R G24933T T28144C

EPI_ISL_426831 MT451391
 2020-03-25 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC571/2020
 C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T C29774T

EPI_ISL_426832 MT451392
 2020-03-25 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC572/2020
 A2480G C2558T G3564K C8078T C8917T G10631A C10889T G11083T C14805T G16795T G26144T

EPI_ISL_426841 MT451400
 2020-03-25 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC584/2020
 C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T

EPI_ISL_426854 MT451410
 2020-03-25 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC597/2020
 C241T C313T C3037T C14408T A23403G G28337T GGG28881AAC

EPI_ISL_426855 MT451411
 2020-03-25 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC598/2020
 C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T

EPI_ISL_426856 MT451412
 2020-03-25 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC599/2020
 C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T

EPI_ISL_427161 MT358693
 2020-03-25 2020-04-17
 United States SARS-CoV-2/human/USA/CT-UW-3845/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C36T T6691C C7843T G7936T G11083T A13768G C14805T A15869T T17247C C17639T G26144T T28693C C28915T TG29867AA C29870A

EPI_ISL_427166 MT358703
 2020-03-25 2020-04-17
 United States SARS-CoV-2/human/USA/ID-UW-3888/2020
 ATTAAAGGT1- C36T C241T C1059T C3037T C11224T C14408T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_427183 MT358683
 2020-03-25 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-3828/2020
 ATTAAAGG1- ATACCTTCCCAGGTAACAAACC12- C36T C241T C1059T C3037T C4423T C14408T A23403G G25563T T28930C AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_427184 MT358684
 2020-03-25 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-3829/2020
 TT2-B C36T C241T C1059T C3037T C7765T G10846T C14408T C19488T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_427192 MT358692
 2020-03-25 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-3844/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C36T C241T C1059T C3037T G4975T C14408T A23403G G25523T G25563T T27869C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_427197 MT358698
 2020-03-25 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-3868/2020
 ATTAAAGGTT1- C36T C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_427200 MT358701
 2020-03-25 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-3881/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A31T C36T C241T C1059T C3037T C14408T A23403G G25563T C28472T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_427303
 2020-03-25 2020-04-18
 Brazil hCoV-19/Brazil/RJ-818/2020
 ATTAAAGGTTTATACC1- C241T C622T C3037T C14408T A23403G T27299C GGG28881AAC T29148C G29783T G29786C TATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29791-

EPI_ISL_427337
 2020-03-25 2020-04-18
 Russia hCoV-19/Russia/StPetersburg-RII4326S/2020
 C241T C3037T C14408T A23403G

EPI_ISL_427338
 2020-03-25 2020-04-18
 Russia hCoV-19/Russia/StPetersburg-RII4328S/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_427339
 2020-03-25 2020-04-18
 Russia hCoV-19/Russia/StPetersburg-RII4332S/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_427398
 2020-03-25 2020-04-18
 Taiwan hCoV-19/Taiwan/TSGH-11/2020
 C6312A G11083T C13730T C23929T C28311T A29901C -29904AAAAAAAAAAAAAAAAAAAAAAAAATTTAAAAAAAAAAAAAAAAAAAAAAAAACCCCAAAAAAAAAAAAAAAACCAAATAAACAATAAAATAAAAATTAAAATTAAAAT

EPI_ISL_427621
 2020-03-25 2020-04-19
 United States hCoV-19/USA/AK-PHL115/2020
 ATTAAAGGTTT1- C241T C3037T G8600T C14408T A23403G C25350T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_428252
 2020-03-25 2020-04-20
 United States hCoV-19/USA/WI-UW-156/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T334C C3037T C3373A C14408T C19454T T23155C A23403G C24795T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428297
 2020-03-25 2020-04-20
 United States hCoV-19/USA/WI-UW-201/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428298
 2020-03-25 2020-04-20
 United States hCoV-19/USA/WI-UW-202/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428299
 2020-03-25 2020-04-20
 United States hCoV-19/USA/WI-UW-203/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C10519T G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428300
 2020-03-25 2020-04-20
 United States hCoV-19/USA/WI-UW-204/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T15354C A16984G C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428301
 2020-03-25 2020-04-20
 United States hCoV-19/USA/WI-UW-205/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T15354C A16984G C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428302
 2020-03-25 2020-04-20
 United States hCoV-19/USA/WI-UW-206/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C875T A9848G C29013T G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428304
 2020-03-25 2020-04-20
 United States hCoV-19/USA/WI-UW-208/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428305
 2020-03-25 2020-04-20
 United States hCoV-19/USA/WI-UW-209/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C29415T G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428307
 2020-03-25 2020-04-20
 United States hCoV-19/USA/WI-UW-211/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C29347T G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428308
 2020-03-25 2020-04-20
 United States hCoV-19/USA/WI-UW-212/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G25244T G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428309
 2020-03-25 2020-04-20
 United States hCoV-19/USA/WI-UW-213/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G6341A G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428310
 2020-03-25 2020-04-20
 United States hCoV-19/USA/WI-UW-214/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428311
 2020-03-25 2020-04-20
 United States hCoV-19/USA/WI-UW-215/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428312
 2020-03-25 2020-04-20
 United States hCoV-19/USA/WI-UW-216/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A9496G C9520T G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428313
 2020-03-25 2020-04-20
 United States hCoV-19/USA/WI-UW-217/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428314
 2020-03-25 2020-04-20
 United States hCoV-19/USA/WI-UW-218/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C8782T T18736C C24034T T26729C C27635T G28077C T28144C A29567C A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428315
 2020-03-25 2020-04-20
 United States hCoV-19/USA/WI-UW-219/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428316
 2020-03-25 2020-04-20
 United States hCoV-19/USA/WI-UW-220/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A20755C A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428317
 2020-03-25 2020-04-20
 United States hCoV-19/USA/WI-UW-221/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A27474G G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428318
 2020-03-25 2020-04-20
 United States hCoV-19/USA/WI-UW-222/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428354
 2020-03-25 2020-04-20
 France hCoV-19/France/IDF3577/2020
 C241T C3037T T9172C A10948G C14408T G16068T A23403G G26730T GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_428361
 2020-03-25 2020-04-20
 France hCoV-19/France/IDF3703/2020
 C241T C3037T C14408T C15324T A22206G A23403G CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_428891
 2020-03-25 2020-04-22
 Russia hCoV-19/Russia/Yakutia-83301/2020
 C48A C241T G1355T C3037T G10097A C14408T G17964T A23403G C23731T GGG28881AAC

EPI_ISL_428908
 2020-03-25 2020-04-22
 Russia hCoV-19/Russia/Pskov-83602/2020
 C241T C3037T C14408T A20268G A23403G

EPI_ISL_428915
 2020-03-25 2020-04-22
 Russia hCoV-19/Russia/Sverdlovsk-82904/2020
 C241T C3037T C14408T A20268G A23403G

EPI_ISL_428997 MT385421
 2020-03-25 2020-04-23
 United States SARS-CoV-2/human/USA/CA-CZB015/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_429001 MT385425
 2020-03-25 2020-04-23
 United States SARS-CoV-2/human/USA/CA-CZB046/2020
 ATTA1- C5849T C16887T C17634A

EPI_ISL_429012 MT385436
 2020-03-25 2020-04-23
 United States SARS-CoV-2/human/USA/CA-CZB016/2020
 ATTA1- G1440A G2891A A6944G C9430T

EPI_ISL_429017 MT385441
 2020-03-25 2020-04-23
 United States SARS-CoV-2/human/USA/CA-CZB030/2020
 ATTAAA1- C241T GTTATG515- C3037T G6032A C14408T C18877T A23403G G25563T C27092T

EPI_ISL_429021 MT385445
 2020-03-25 2020-04-23
 United States SARS-CoV-2/human/USA/CA-CZB045/2020
 G2840A C8782T C17747T A17858G C18060T A26045G T28144C AAAAAAAAAAAAAAAAA29887-

EPI_ISL_429035 MT385459
 2020-03-25 2020-04-23
 United States SARS-CoV-2/human/USA/CA-CZB042/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C14408T A23403G G25563T C29364T

EPI_ISL_429037 MT385461
 2020-03-25 2020-04-23
 United States SARS-CoV-2/human/USA/CA-CZB09/2020
 ATTAAAGGTTTA1- C241T T833C C1059T C3037T A7901G C14408T C18681T A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_429039 MT385463
 2020-03-25 2020-04-23
 United States SARS-CoV-2/human/USA/CA-CZB036/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_429045 MT385469
 2020-03-25 2020-04-23
 United States SARS-CoV-2/human/USA/CA-CZB039/2020
 ATTAAAGGTTTATA1- C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_429048 MT385472
 2020-03-25 2020-04-23
 United States SARS-CoV-2/human/USA/CA-CZB043/2020
 ATTAAAGGTTTA1- T490A C3177T C8782T T18736C G19684T C24034T T26729C C27635T G28077C T28144C A29700G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_429174
 2020-03-25 2020-04-23
 Thailand hCoV-19/Thailand/Bangkok-0038/2020
 ATTAAAG1- C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429530
 2020-03-25 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI437/2020
 C241T C1059T C3037T T8788C C14408T C19512T C23114T A23403G G25563T G26951A

EPI_ISL_429533
 2020-03-25 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI444/2020
 C241T C1059T C3037T T11233A C14408T C15842A A23403G G25563T G27604T

EPI_ISL_429534
 2020-03-25 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI446/2020
 C241T C1059T C3037T A11996G C14408T A23403G G25563T

EPI_ISL_429535
 2020-03-25 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI448/2020
 C241T C1059T C3037T T8788C C14408T C22747T A23403G G25563T G26951A

EPI_ISL_429536
 2020-03-25 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI449/2020
 C241T C1059T C3037T C8293T C14408T A23403G G25563T

EPI_ISL_429538
 2020-03-25 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI451/2020
 C241T C3037T C7834T C14408T A23403G

EPI_ISL_429539
 2020-03-25 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI454/2020
 C241T C3037T C7834T C14408T A23403G

EPI_ISL_429540
 2020-03-25 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI456/2020
 C241T C1059T C1302T C3037T C14408T A23403G G25563T

EPI_ISL_429542
 2020-03-25 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI461/2020
 ATG1605- C20402T C28253A

EPI_ISL_429543
 2020-03-25 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI462/2020
 C241T C1059T C1302T C3037T C14408T A23403G G25563T

EPI_ISL_429544
 2020-03-25 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI463/2020
 C241T C3037T G5950T C14408T C18877T A23403G G24197T G25563T G25599T C26735T

EPI_ISL_429545
 2020-03-25 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI464/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429546
 2020-03-25 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI466/2020
 C218T C241T C1059T C1302T C3037T C14408T A23403G G25563T

EPI_ISL_429547
 2020-03-25 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI467/2020
 C241T C3037T C7834T C14408T A23403G

EPI_ISL_429548
 2020-03-25 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI468/2020
 C241T C3037T C7834T C14408T A23403G

EPI_ISL_429549
 2020-03-25 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI469/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_429550
 2020-03-25 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI470/2020
 C241T G611A C3037T C14408T A23403G

EPI_ISL_429551
 2020-03-25 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI471/2020
 C241T A761G C1059T C3037T A6825C C14408T A23403G G25563T

EPI_ISL_429552
 2020-03-25 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI472/2020
 C241T C1059T C1302T C3037T C14408T A23403G G25563T

EPI_ISL_429553
 2020-03-25 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI473/2020
 C241T C3037T C7834T C14408T A23403G

EPI_ISL_429554
 2020-03-25 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI474/2020
 C241T C1059T C3037T C12781T C14408T C15842A A23403G C25499T G25563T

EPI_ISL_429555
 2020-03-25 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI475/2020
 C241T C3037T C7834T C14408T A23403G

EPI_ISL_429558
 2020-03-25 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI479/2020
 C241T C1059T C3037T C6968T C14408T A23403G G24368T G25563T

EPI_ISL_429559
 2020-03-25 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI480/2020
 C241T C1267T C3037T C14408T A23403G C28331T GGG28881AAC C29284T

EPI_ISL_429560
 2020-03-25 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI481/2020
 C241T C1059T C3037T G11083T C14408T A23403G G25563T C26461T

EPI_ISL_429561
 2020-03-25 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI482/2020
 C241T C1059T C1917T C3037T C14408T A23403G G25563T

EPI_ISL_429575
 2020-03-25 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI507/2020
 C241T C1059T C3037T C14408T A23403G G25563T C26721T

EPI_ISL_429577
 2020-03-25 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI509/2020
 C241T G410T C1059T A2674G C3037T C13225T C14408T A23403G G25563T

EPI_ISL_429578
 2020-03-25 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI510/2020
 C241T C1059T C3037T T8788C C14408T A23403G G25563T G26951A

EPI_ISL_429580
 2020-03-25 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI512/2020
 C241T C3037T C7834T C14408T A23403G

EPI_ISL_429618 MT375447
 2020-03-25 2020-04-23
 United States SARS-CoV-2/human/USA/WA-UW-4741/2020
 ATT1- A4T C36T C241T C1059T C3037T C14408T G19542T A23403G G25563T AA29902-

EPI_ISL_429767
 2020-03-25 2020-04-24
 Luxembourg hCoV-19/Luxembourg/LNS3437586/2020
 C241T C1059T C3037T C4320T C14408T A23403G G24834T G25563T C25688T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_429872
 2020-03-25 2020-04-24
 Turkey hCoV-19/Turkey/HSGM-11518/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C884T G1397A G8653T G11083T T28688C G29742T

EPI_ISL_430112
 2020-03-25 2020-04-25
 Russia hCoV-19/Russia/Ulan-Ude-RII4562V/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_430154 MT632629
 2020-03-25 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S300/2020
 A34T C241T C1059T C3037T C14408T A23403G G25563T G28703C G29553A

EPI_ISL_432502
 2020-03-25 2020-04-29
 United Kingdom hCoV-19/England/SHEF-CB0F2/2020
 C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T C27513T GGG28881AAC

EPI_ISL_432712
 2020-03-25 2020-04-29
 United Kingdom hCoV-19/England/SHEF-BFE8E/2020
 C241T C3037T C3619T T7438C G10097A C14408T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_432713
 2020-03-25 2020-04-29
 United Kingdom hCoV-19/England/SHEF-BFEF7/2020
 C401T A2480G C2558T C8078T C8917T C9360T G11083T C14805T G26144T

EPI_ISL_433316
 2020-03-25 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR607/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- GTCATGTTA510- C12710T C26636T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_433321
 2020-03-25 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR663/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2196C G11083T C14805T C17172A T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_433326
 2020-03-25 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR694/2020
 C241T C3037T C5812T C14408T A23403G GGG28881AAC

EPI_ISL_433327
 2020-03-25 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR702/2020
 C241T C3037T C7047T C14408T A23403G G26615T GGG28881AAC

EPI_ISL_433350
 2020-03-25 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR849/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G27281T G28851T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_434111 MT632988
 2020-03-25 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S351/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434112 MT632986
 2020-03-25 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S352/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434113 MT632902
 2020-03-25 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S353/2020
 C8782T C15924T C17747T A17858G C18060T T28144C

EPI_ISL_434114 MT632927
 2020-03-25 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S354/2020
 C8782T C17747T A17858G C18060T C21575T T28144C

EPI_ISL_434115 MT633014
 2020-03-25 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S355/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434116 MT633015
 2020-03-25 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S356/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434117 MT632996
 2020-03-25 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S357/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434118 MT632973
 2020-03-25 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S358/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434119 MT632885
 2020-03-25 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S359/2020
 C8782T C16393T C17747T A17858G C18060T C21575T T28144C

EPI_ISL_434120 MT632994
 2020-03-25 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S360/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434156 MT632989
 2020-03-25 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S396/2020
 C8782T C17747T A17858G C18060T C21575T T28144C

EPI_ISL_434157 MT633032
 2020-03-25 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S397/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434165 MT633026
 2020-03-25 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S405/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434178 MT632968
 2020-03-25 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S418/2020
 C8782T C17747T A17858G C18060T C21575T T28144C

EPI_ISL_434182 MT632975
 2020-03-25 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S422/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434189 MT633028
 2020-03-25 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S429/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434190 MT633034
 2020-03-25 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S430/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434263 MT632959
 2020-03-25 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S503/2020
 G3231T C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434270 MT632793
 2020-03-25 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S510/2020
 C1929T C5784T A8072G C8782T C9207T C17747T A17858G C18060T C18129T G26730A T28144C

EPI_ISL_434281 MT632855
 2020-03-25 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S521/2020
 C241T C379A C1059T T2244C C3037T C14408T A23403G G25563T

EPI_ISL_434292 MT632980
 2020-03-25 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S532/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_434293 MT632829
 2020-03-25 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S533/2020
 C241T C1059T C3037T G7560A C14408T G19999T G21452T A23403G G25563T

EPI_ISL_434294 MT632857
 2020-03-25 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S534/2020
 C241T C1059T C3037T C7164T C14408T A23403G G25563T G26842T G29553A

EPI_ISL_434295 MT632834
 2020-03-25 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S535/2020
 C241T C1059T C3037T C7431T C14408T A23403G C25350T G25563T G29553A

EPI_ISL_434304 MT632938
 2020-03-25 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S544/2020
 C8782T A10844G C17747T A17858G C18060T T28144C

EPI_ISL_434327 MT632953
 2020-03-25 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S567/2020
 C8782T C17747T C17766T A17858G C18060T T28144C

EPI_ISL_434329 MT632908
 2020-03-25 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S569/2020
 C241T C1059T C3037T C12102T C14408T A23403G G25563T

EPI_ISL_434340 MT632870
 2020-03-25 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S580/2020
 C241T C1059T C3037T C14408T A21043G A23403G G25563T G29553A

EPI_ISL_434525 MT811646
 2020-03-25 2020-04-29
 United States SARS-CoV-2/human/USA/SEARCH-0068-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C10319T C14408T CTT22286- A23403G G25563T G27463T ATTTGCTTT27579- C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_434539
 2020-03-25 2020-04-29
 Costa Rica hCoV-19/Costa Rica/0006/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C3037T C14408T A18196C A23403G CCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29801-

EPI_ISL_434641
 2020-03-25 2020-04-30
 Sweden hCoV-19/Sweden/20-08682/2020
 C241T C1059T C3037T G7452T C14408T A23403G G24368T G25563T

EPI_ISL_434654
 2020-03-25 2020-04-30
 Sweden hCoV-19/Sweden/20-06383/2020
 C241T C3037T C14195A C14408T A23403G

EPI_ISL_434655
 2020-03-25 2020-04-30
 Sweden hCoV-19/Sweden/20-06468/2020
 C241T C3037T C14408T A23403G

EPI_ISL_434677 MT324684
 2020-03-25 2020-04-11
 United States SARS-CoV-2/ENV/USA/UF-3/2020
 T490A C3177T C8782T T18736C C24034T T26729C G28077C T28144C A29700G AAAAAAAAAAAAAA29890-

EPI_ISL_434890
 2020-03-25 2020-05-01
 United States hCoV-19/USA/TX-HMH230/2020
 C241T C1059T C3037T C10319T C14408T A23403G G25563T C27964T

EPI_ISL_434958
 2020-03-25 2020-05-01
 United States hCoV-19/USA/TX-HMH366/2020
 C241T C3037T C14408T A23403G C23707T C29441G

EPI_ISL_434962
 2020-03-25 2020-05-01
 United States hCoV-19/USA/TX-HMH371/2020
 C241T C3037T C6449T C14408T A23403G

EPI_ISL_435046 MT428552
 2020-03-25 2020-05-02
 Kazakhstan SARS-CoV-2/human/KAZ/NCB-2/2020
 C241T C3037T C14408T A23403G A26530G G28857T

EPI_ISL_435047 MT428553
 2020-03-25 2020-05-02
 Kazakhstan SARS-CoV-2/human/KAZ/NCB-3/2020
 C241T C3037T C14408T A18956G C19170T G19509A A23403G GGG28881AAC

EPI_ISL_435071
 2020-03-25 2020-05-02
 India hCoV-19/India/NCDC-02105/2020
 T76W C241T C3037T T8022K C14408T C18395T A23403G C25721M GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_435409
 2020-03-25 2020-05-04
 Hungary hCoV-19/Hungary/SRC-00417/2020
 C241T C313T C3037T C5144T C14408T A23403G C26333T GGG28881AAC G29527T

EPI_ISL_435421
 2020-03-25 2020-05-04
 Hungary hCoV-19/Hungary/MBL-003/2020
 C241T C3037T C14408T C15324T A23403G

EPI_ISL_435427
 2020-03-25 2020-05-04
 Hungary hCoV-19/Hungary/SRC-00278w/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_435428
 2020-03-25 2020-05-04
 Hungary hCoV-19/Hungary/SRC-02801w/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_435431
 2020-03-25 2020-05-04
 Hungary hCoV-19/Hungary/SRC-00572w/2020
 C241T C3037T C14408T C16289T A23403G G25429T

EPI_ISL_435678
 2020-03-25 2020-05-05
 Singapore hCoV-19/Singapore/73/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAA1- C6310A C6312A G11083T C13730T C19524T C23929T C28311T C28758T GTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29828-

EPI_ISL_436097
 2020-03-25 2020-05-05
 Australia hCoV-19/Australia/QLDID935/2020
 A1- C241T C3037T C5223T G6894T C14408T A20268G A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_436314
 2020-03-25 2020-05-06
 Spain hCoV-19/Spain/Valencia219/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C14408T G15438T A20268G A21137R A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_436342
 2020-03-25 2020-05-06
 Spain hCoV-19/Spain/Valencia247/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C10279T C14408T A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_436345
 2020-03-25 2020-05-06
 Spain hCoV-19/Spain/Valencia250/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C313T C3037T C14408T A23403G C26907A GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_436467
 2020-03-25 2020-05-06
 United States hCoV-19/USA/PA-MGSC12-04/2020
 C241T C1059T C1884T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_436470
 2020-03-25 2020-05-06
 United States hCoV-19/USA/PA-MGSC15-04/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_436472
 2020-03-25 2020-05-06
 United States hCoV-19/USA/PA-MGSC17-04/2020
 C241T C1059T C3037T C11916T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_436473
 2020-03-25 2020-05-06
 United States hCoV-19/USA/PA-MGSC18-04/2020
 C241T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_436474
 2020-03-25 2020-05-06
 United States hCoV-19/USA/PA-MGSC20-04/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_436477
 2020-03-25 2020-05-06
 United States hCoV-19/USA/PA-MGSC24-05/2020
 C241T C1059T C2189T C3037T C14408T A23403G G25563T C26060T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_436479
 2020-03-25 2020-05-06
 United States hCoV-19/USA/PA-MGSC28-05/2020
 C241T C3037T A4595G C14408T T19839C A23403G GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_436480
 2020-03-25 2020-05-06
 United States hCoV-19/USA/PA-MGSC29-05/2020
 C241T C1059T C3037T C11916T C14408T A23403G G25563T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_436482
 2020-03-25 2020-05-06
 United States hCoV-19/USA/PA-MGSC32-05/2020
 C241T C1059T C3037T C14408T A23403G G25563T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_436493
 2020-03-25 2020-05-06
 United States hCoV-19/USA/PA-MGSC45-05/2020
 C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G28085C G29540A GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_436503
 2020-03-25 2020-05-06
 United States hCoV-19/USA/PA-MGSC56-05/2020
 C8782T C17747T A17858G C18060T A24694T T28144C GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_436630 MT706442
 2020-03-25 2020-05-06
 United States SARS-CoV-2/human/USA/WI-UW-336/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T334C C3037T C3373A C14408T C19454T T23155C A23403G C24795T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_436861 MT439291
 2020-03-25 2020-05-06
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20101/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_436864 MT439292
 2020-03-25 2020-05-06
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20174/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T A5011M C14408T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_436884 MT439289
 2020-03-25 2020-05-06
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20104/2020
 ATTAAAG1- C241T C1059T C3037T C14408T A23403G G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_436885 MT439290
 2020-03-25 2020-05-06
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20109/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C3037T C4891Y C14408T A23403G G25563T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_436886 MT439288
 2020-03-25 2020-05-06
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20115/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C10525T C14408T A23403G G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_436998
 2020-03-25 2020-05-08
 Denmark hCoV-19/Denmark/ALAB-SSI-616/2020
 C241T C1059T C1917T C3037T C14408T C21428T A23403G G25563T

EPI_ISL_436999
 2020-03-25 2020-05-08
 Denmark hCoV-19/Denmark/ALAB-SSI-617/2020
 C241T C1059T C3037T G6463T C14408T A23403G G25563T

EPI_ISL_437000
 2020-03-25 2020-05-08
 Denmark hCoV-19/Denmark/ALAB-SSI-619/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_437017
 2020-03-25 2020-05-08
 Denmark hCoV-19/Denmark/ALAB-SSI-645/2020
 C241T C1059T C1302T C3037T C14408T A23403G G25563T T28543C

EPI_ISL_437018
 2020-03-25 2020-05-08
 Denmark hCoV-19/Denmark/ALAB-SSI-646/2020
 C241T C1059T C1302T C3037T C14408T A23403G G25563T

EPI_ISL_437187
 2020-03-25 2020-05-08
 Indonesia hCoV-19/Indonesia/EJ-ITD853Sp/2020
 C12823T C20574T

EPI_ISL_437231
 2020-03-25 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0032/2020
 A2480G C2558T G6618A G11083T A11090T C14805T G17338T C20429T G26144T

EPI_ISL_437264
 2020-03-25 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0067/2020
 C241T C3037T C13019T C14408T A23403G C24213T GGG28881AAC

EPI_ISL_437307
 2020-03-25 2020-05-08
 Turkey hCoV-19/Turkey/HSGM-439/2020
 ATTAAA1- C1314T G1397A T6202A C8964T C10202T G11083T C13476T C16247T C24865T T28688C G29742T

EPI_ISL_437308
 2020-03-25 2020-05-08
 Turkey hCoV-19/Turkey/HSGM-515/2020
 ATTAAA1- C241T C3037T C14408T C15240T T19839C A23403G C26256T GGG28881AAC

EPI_ISL_437312
 2020-03-25 2020-05-08
 Turkey hCoV-19/Turkey/HSGM-1468/2020
 ATTAAA1- C884T G1397A T5182C G8653T G11083T T28688C G29742T

EPI_ISL_437316
 2020-03-25 2020-05-08
 Turkey hCoV-19/Turkey/HSGM-1004/2020
 ATTAAA1- C241T C3037T C5736T C14408T A20268G A23403G C23874T C25469Y

EPI_ISL_437333
 2020-03-25 2020-05-08
 Turkey hCoV-19/Turkey/HSGM-11640/2020
 ATTAAA1- C3037T C14408T T15102C T19839C A23403G C26549T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_437335
 2020-03-25 2020-05-08
 Turkey hCoV-19/Turkey/HSGM-12059/2020
 ATTAAA1- C228T C3037T C3903T C14408T A23403G C26549T T26551C A27354G AAAAAAAAAAAA29892-

EPI_ISL_437553
 2020-03-25 2020-05-11
 United States hCoV-19/USA/CA-SR0259/2020
 C241T C1059T C1917T C3037T C14408T A23403G G25563T

EPI_ISL_437593
 2020-03-25 2020-05-11
 United States hCoV-19/USA/CA-SR0187/2020
 C241T C3037T C14408T C18814T TTTGGGTGTTTA21982- A23403G C29870M

EPI_ISL_437598
 2020-03-25 2020-05-11
 United States hCoV-19/USA/CA-SR0179/2020
 C241T C1059T C1887T C3037T C14408T G22487C A23403G G25563T C29870A

EPI_ISL_437933
 2020-03-25 2020-05-12
 Austria hCoV-19/Austria/CeMM0047/2020
 C241T C3037T C14408T G15957T C18877T G21974R C21977Y T22521K A23403G G24197T G25563T C26735T C28057Y ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_437934
 2020-03-25 2020-05-12
 Austria hCoV-19/Austria/CeMM0048/2020
 C241T C1457T C1594T C3037T C9491T G11083T C11109T C14408T G21987T C22176M C22224M T22521K A23403G G25563T C29743T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_437953
 2020-03-25 2020-05-12
 Austria hCoV-19/Austria/CeMM0090/2020
 C241T C3037T C14408T T22521K A23403G C27046T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_437954
 2020-03-25 2020-05-12
 Austria hCoV-19/Austria/CeMM0091/2020
 C241T C3037T C14408T T22521K A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_438103
 2020-03-25 2020-05-12
 Austria hCoV-19/Austria/CeMM0276/2020
 C241T C3037T C14408T A23403G A24862G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_438104
 2020-03-25 2020-05-12
 Austria hCoV-19/Austria/CeMM0277/2020
 C241T C3037T G12832A C14408T T22521K A23403G C28868Y GGG28881AAC AAAA29900-

EPI_ISL_438105
 2020-03-25 2020-05-12
 Austria hCoV-19/Austria/CeMM0278/2020
 C241T C3037T C14408T A20268G A23403G G29734C AAAAAAAAAAAAA29891-

EPI_ISL_438106
 2020-03-25 2020-05-12
 Austria hCoV-19/Austria/CeMM0279/2020
 C8782T T9530K T22521K C26088T T27801C T28144C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_438107
 2020-03-25 2020-05-12
 Austria hCoV-19/Austria/CeMM0280/2020
 C241T C3037T C6638Y C14408T A20268G T22521K A23403G C24333Y AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_438108
 2020-03-25 2020-05-12
 Austria hCoV-19/Austria/CeMM0281/2020
 C241T C3037T C14408T A20268G T22521K A23403G AAAAAAAAA29895-

EPI_ISL_438109
 2020-03-25 2020-05-12
 Austria hCoV-19/Austria/CeMM0283/2020
 C241T C3037T C14408T T22521K A23403G C27046T GGG28881AAC AAAAAAAAAAAAAAAAA29887-

EPI_ISL_438138
 2020-03-25 2020-05-12
 India hCoV-19/India/GMC-RR1191/2020
 C6312A G11083T C13730T C23929T C28311T C29733Y G29868R C29870A

EPI_ISL_438139
 2020-03-25 2020-05-12
 India hCoV-19/India/GMC-RK1090/2020
 -C6311AA G11083T C13730T C23929T C28311T C29870A

EPI_ISL_438970
 2020-03-25 2020-05-12
 Japan hCoV-19/Japan/Donner26/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C14408T A23403G GGG28881AAC ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_442001
 2020-03-25 2020-05-12
 United Kingdom hCoV-19/England/SHEF-C6C7B/2020
 A2480G C2558T C8078T C8917T G11083T C14805T G26144T

EPI_ISL_443274
 2020-03-25 2020-05-12
 France hCoV-19/France/B5374/2020
 C241T C3037T G11083T C14408T G21724T A23403G G27364T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_443298
 2020-03-25 2020-05-12
 France hCoV-19/France/IDF5851/2020
 C241T C1059T A2219G C3037T C14408T A23403G G25563T C28344T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_443299
 2020-03-25 2020-05-12
 France hCoV-19/France/IDF5853/2020
 C241T C1059T C3037T G6689A C14408T C14571T C16655T A23403G G25563T A27748C GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_443309
 2020-03-25 2020-05-12
 France hCoV-19/France/HF3669/2020
 C241T C1059T C3037T T3710C C10582T C14408T A23403G G25563T CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

EPI_ISL_443316
 2020-03-25 2020-05-12
 France hCoV-19/France/HF3668/2020
 C241T C1059T C3037T T3710C C10582T C14408T A23403G G25563T CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

EPI_ISL_443719
 2020-03-25 2020-05-12
 United Kingdom hCoV-19/England/BRIS-1248A3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- A1904G C8090T C10789T C11008T C27247Y GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_445084
 2020-03-25 2020-05-14
 United States hCoV-19/USA/TX_GCID_192000135/2020
 ATTA1CCCG AGGTTT6G A12C T490A C3177T C6040T C8782T C8950T G12478A T18736C C24034T T26729C G28077C T28144C C28896G C29451T A29700G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871G

EPI_ISL_445107
 2020-03-25 2020-05-15
 United States hCoV-19/USA/CA-SR0115/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_445172 MT474129
 2020-03-25 2020-05-15
 United States SARS-CoV-2/human/USA/CA-CZB-1124/2020
 C8782T T10129C C17747T A17858G C18060T T28144C

EPI_ISL_445224
 2020-03-25 2020-05-15
 Sweden hCoV-19/Sweden/20-06459/2020
 G1440A G2891A

EPI_ISL_445336
 2020-03-25 2020-05-15
 Chile hCoV-19/Chile/Concepcion_3/2020
 A1CCAACAACACAGTTTATGATCCTTTGCAACCTGAA -5GACTCATTCAAGGAGGAGTTAG C241T C3037T C8389T C14408T A23403G G25563T CATGTGATTTTAATA29838T CT29854TC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_445338
 2020-03-25 2020-05-15
 Chile hCoV-19/Chile/Temuco_3/2020
 A1CCAACAACACAGTTTATGATCCTTTGCAACCTGAA -5GACTCATTCAAG T76W T78K C241T C3037T C8389T C14408T C18687Y A23403G G25563T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_445339
 2020-03-25 2020-05-15
 Chile hCoV-19/Chile/Temuco_4/2020
 A1GGTTTATGATCCTTTGCAACCTGAA -5GACTCATTCAAGGAGGAGTT C241T T892C C3037T C8389T C14408T A23403G G25563T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_445340
 2020-03-25 2020-05-15
 Chile hCoV-19/Chile/Temuco_5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C8389T C12880T C14408T A23403G G25563T A28850T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838T

EPI_ISL_445342
 2020-03-25 2020-05-15
 Chile hCoV-19/Chile/Temuco_7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C6384T C8389T C14408T A23403G G25563T -G29842CAC A29850T GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_445343
 2020-03-25 2020-05-15
 Chile hCoV-19/Chile/Temuco_8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C8389T C14408T A23403G G25563T CA29838TG GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_445346
 2020-03-25 2020-05-15
 Chile hCoV-19/Chile/Temuco_12/2020
 ATTAAAGGTTTATACCT1- C241T C3037T C8389T C14408T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_445347
 2020-03-25 2020-05-15
 Chile hCoV-19/Chile/Temuco_13/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T G2516A C3037T T7192C C8389T C14408T A23403G C25000Y G25563T GAT29843CTC T29848C TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_445348
 2020-03-25 2020-05-15
 Chile hCoV-19/Chile/Temuco_14/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C14408T C18877T A23403G G25563T A27315R C29197Y G29747R ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_447117 MT506544
 2020-03-25 2020-05-16
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20320/2020
 C241T C1059T C3037T C12525Y C14408T A23403G G25563T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_447257
 2020-03-25 2020-05-17
 Taiwan hCoV-19/Taiwan/TSGH-31/2020
 

EPI_ISL_447268
 2020-03-25 2020-05-17
 Israel hCoV-19/Israel/990059252/2020
 C241T C3037T C14408T C15277T A21917G A23403G A26530G AAAAAAAAAAAA29892-

EPI_ISL_447269
 2020-03-25 2020-05-17
 Israel hCoV-19/Israel/990059251/2020
 C241T C1059T C3037T C14408T C14708T A23403G G25563T AAAAAAAAAAAA29892-

EPI_ISL_447271
 2020-03-25 2020-05-17
 Israel hCoV-19/Israel/990059238/2020
 G11083T G12067T C14805T T17247C C17676T G26144T G26660T C29627T AAAAAAAAAAAA29892-

EPI_ISL_447273
 2020-03-25 2020-05-17
 Israel hCoV-19/Israel/990059233/2020
 C241T C1059T C3037T C14408T G19429T A23403G G25563T AAAAAAAAAAAA29892-

EPI_ISL_447274
 2020-03-25 2020-05-17
 Israel hCoV-19/Israel/990059232/2020
 C241T C1059T C3037T G7295T C14408T A23403G G25563T AAAAAAAAAAAA29892-

EPI_ISL_447275
 2020-03-25 2020-05-17
 Israel hCoV-19/Israel/990059231/2020
 C241T C1059T C3037T G7295T C14408T A23403G G25563T AAAAAAAAAAAA29892-

EPI_ISL_447279
 2020-03-25 2020-05-17
 Israel hCoV-19/Israel/990059203/2020
 C241T C1059T C3037T G13617T C14408T C22264T A23403G G25563T AAAAAAAAAAAA29892-

EPI_ISL_447280
 2020-03-25 2020-05-17
 Israel hCoV-19/Israel/990059202/2020
 C241T C1059T G2035T C3037T C14408T A23403G G25563T AAAAAAAAAAAA29892-

EPI_ISL_447292
 2020-03-25 2020-05-17
 Israel hCoV-19/Israel/701002540/2020
 C241T C1059T C3037T C14408T A23403G G25563T C28887T AAAAAAAAAAAA29892-

EPI_ISL_447293
 2020-03-25 2020-05-17
 Israel hCoV-19/Israel/701002538/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAA29892-

EPI_ISL_447294
 2020-03-25 2020-05-17
 Israel hCoV-19/Israel/701002504/2020
 C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAA29892-

EPI_ISL_447295
 2020-03-25 2020-05-17
 Israel hCoV-19/Israel/701002489/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAA29892-

EPI_ISL_447474
 2020-03-25 2020-05-17
 Spain hCoV-19/Spain/Valencia/COV000523/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C17642T A20268G A23403G G24173T G29734C AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_447533
 2020-03-25 2020-05-17
 Spain hCoV-19/Spain/Barcelona_VH7663/2020
 ATTAAAGGTTT1- C241T C3037T C14408T A20268G A23403G

EPI_ISL_447617
 2020-03-25 2020-05-18
 Taiwan hCoV-19/Taiwan/NTU23/2020
 C241T C3037T A5855G C7945T C14408T T19839C A23403G GGG28881AAC G29628T G29751A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_447618
 2020-03-25 2020-05-18
 Taiwan hCoV-19/Taiwan/NTU24/2020
 C241T C1059T C3037T C11750A C14408T C17733T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_447888 MT481928
 2020-03-25 2020-05-18
 United States SARS-CoV-2/human/USA/CA-CZB-1137/2020
 ATTAAAGGTTTATA1- C241T C1059T C3037T C14408T C17410A A23403G G25563T C27964T

EPI_ISL_448972
 2020-03-25 2020-05-19
 United Kingdom hCoV-19/Northern Ireland/NIRE-FB730/2020
 ATTAAAGGTTTA1- C241T C3037T C14408T T19839C A23403G A24205T A24253G GGG28881AAC

EPI_ISL_448974
 2020-03-25 2020-05-19
 United Kingdom hCoV-19/Northern Ireland/NIRE-FB75E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_450337
 2020-03-25 2020-05-20
 Spain hCoV-19/Spain/Barcelona_VH7924/2020
 ATTAAA1- C241T C3037T C14408T A20268G A23403G T27215C G29734C

EPI_ISL_450346
 2020-03-25 2020-05-20
 Norway hCoV-19/Norway/Trondheim-S4/2020
 ATTAAAGGTTTATACCTTCC1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAA29889-

EPI_ISL_450347
 2020-03-25 2020-05-20
 Norway hCoV-19/Norway/Trondheim-S5/2020
 ATTAAAGGTTTATACCTTCC1- C241T C1059T C3037T C14408T G15380T A23403G G25563T AAAAAAAAAAAAAAA29889-

EPI_ISL_450449 MT499175
 2020-03-25 2020-05-21
 United States SARS-CoV-2/human/USA/CA-CZB-1200/2020
 ATTA1- C241T C3037T C14408T A20268G A23403G

EPI_ISL_450450 MT499176
 2020-03-25 2020-05-21
 United States SARS-CoV-2/human/USA/CA-CZB-1201/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_450451 MT499177
 2020-03-25 2020-05-21
 United States SARS-CoV-2/human/USA/CA-CZB-1202/2020
 ATTA1- C241T G1719A C3037T C14408T G18984T C19170T G19509A A23403G G28077T GGG28881AAC

EPI_ISL_450459 MT499185
 2020-03-25 2020-05-21
 United States SARS-CoV-2/human/USA/CA-CZB-1210/2020
 ATTAAAGGTT1- C241T C3037T C14408T G22021T A23403G GGG28881AAC

EPI_ISL_450618 MT509685
 2020-03-25 2020-05-21
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20339/2020
 C241T C1059T C3037T T3834Y C14408T A23403G G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_450724
 2020-03-25 2020-05-22
 Belgium hCoV-19/Belgium/ITM_C026/2020
 G11083T C14230T C14805T T17247C G26144T

EPI_ISL_451138
 2020-03-25 2020-05-23
 Australia hCoV-19/Australia/SAP133/2020
 A1- T1368C C6990T G11083T C14805T C20736T C23707T G26144T

EPI_ISL_451183
 2020-03-25 2020-05-23
 Uganda hCoV-19/Uganda/UG001/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C8782T C16293T C24138G T28144C G28878A G29742A AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_451450
 2020-03-25 2020-05-25
 United States hCoV-19/USA/NY-NYUMC735/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_451460
 2020-03-25 2020-05-25
 United States hCoV-19/USA/NY-NYUMC745/2020
 C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_451740 LR824313
 2020-03-25 2020-05-25
 Switzerland 100790
 A9483M G11083T C14805T T17247C G22381S G22487R G26144T

EPI_ISL_451744 LR824301
 2020-03-25 2020-05-25
 Switzerland 100794
 C241T C3037T G11138T C14408T C15324T C18912Y A19298W T22516W A23403G T25451Y C27741T

EPI_ISL_451745 LR824305
 2020-03-25 2020-05-25
 Switzerland 100795
 C241T C3037T T14208Y C14408T C15324T C16887T C19325Y A19339M C19448Y A23403G G29422T

EPI_ISL_451747 LR824310
 2020-03-25 2020-05-25
 Switzerland 100797
 C241T C601Y C884Y C1059T C3037T G3068A C14408T A23403G G25563T G26754K

EPI_ISL_451748 LR824309
 2020-03-25 2020-05-25
 Switzerland 100798
 C241T C1427T C3037T C14408T G18972T G19406R A20268G T22426Y A23403G C28854T

EPI_ISL_451749 LR824303
 2020-03-25 2020-05-25
 Switzerland 100799
 C241T G2833K C3037T A13712R C14408T A19298W G19342S T19378Y T22516W A23403G G24077T C27641Y G27758K C29144T

EPI_ISL_451750 LR824307
 2020-03-25 2020-05-25
 Switzerland 100800
 C241T C3037T G11083T C14408T A19298W G19327S G19394R A19548W T19839C A23403G A28780R GGG28881AAC

EPI_ISL_451751 LR824308
 2020-03-25 2020-05-25
 Switzerland 100801
 C241T C3037T C4002T G10097R C13536T C14408T A23403G C23731T GGG28881AAC

EPI_ISL_451755 LR824327
 2020-03-25 2020-05-25
 Switzerland 100805
 C241T C3037T C14408T C15324T A23403G G28881T

EPI_ISL_451780 LR824343
 2020-03-25 2020-05-25
 Switzerland 100832
 C241T C1059T C3037T C14408T G19398K C19470Y T19479W C22347S A22395R T22516W A23403G G25563T C25688T

EPI_ISL_451781 LR824340
 2020-03-25 2020-05-25
 Switzerland 100833
 C241T C3037T C14408T C15324T T19301Y C19448Y G19539R C22347S A23403G C28512T

EPI_ISL_451787 LR824345
 2020-03-25 2020-05-25
 Switzerland 100839
 C241T C3037T C4014T C9532T C14408T A19298W T19389Y A21171R T22499K T22501Y T22516W A23403G G26951K G28068K GGG28881AAC

EPI_ISL_451788 LR824354
 2020-03-25 2020-05-25
 Switzerland 100840
 C241T C1059T C3037T C14408T G19342S G19509K A23403G G25563T G26690K

EPI_ISL_451791 LR824351
 2020-03-25 2020-05-25
 Switzerland 100844
 G11083T C14805T T17247C G19478K T22516W G26144T C28054Y

EPI_ISL_452103
 2020-03-25 2020-05-26
 Germany hCoV-19/Germany/BAV-MVP0018/2020
 T514C ATG1605- C17410T G17679T T18750C

EPI_ISL_452562
 2020-03-25 2020-05-27
 Spain hCoV-19/Spain/COV001196/2020
 C241T C3037T C14408T A20268G A23403G T28600C

EPI_ISL_452567
 2020-03-25 2020-05-27
 Spain hCoV-19/Spain/COV001176/2020
 C241T C3037T C14408T C15960Y A20268G A23403G

EPI_ISL_452572
 2020-03-25 2020-05-27
 Spain hCoV-19/Spain/COV001164/2020
 C241T G1018K C3037T G3564K G3815K G7017K C14408T G15769K C16289T A23403G G24933K G25429T

EPI_ISL_452577
 2020-03-25 2020-05-27
 Spain hCoV-19/Spain/COV001155/2020
 C241T C1059T C3037T G3564K C14408T G16377T A23403G G25217T G25563T G27074T

EPI_ISL_452677
 2020-03-25 2020-05-27
 Spain hCoV-19/Spain/COV000882/2020
 T6394C C8782T C17470T C26088T G26709A T28144C

EPI_ISL_452680
 2020-03-25 2020-05-27
 Spain hCoV-19/Spain/COV000879/2020
 C241T C3037T C11824T C14408T A20268G A23403G

EPI_ISL_452682
 2020-03-25 2020-05-27
 Spain hCoV-19/Spain/COV000875/2020
 C241T C1059T C3037T G11083K T13006C C14408T G17302T A23403G G25563T C25688T

EPI_ISL_452683
 2020-03-25 2020-05-27
 Spain hCoV-19/Spain/COV000874/2020
 C241T C3037T C14408T A20268G A23403G

EPI_ISL_452684
 2020-03-25 2020-05-27
 Spain hCoV-19/Spain/COV000873/2020
 C241T C3037T C14408T A20268G A23403G

EPI_ISL_453466
 2020-03-25 2020-05-27
 United Kingdom hCoV-19/Northern Ireland/NIRE-101E22/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T G15438T A20268G A23403G C26684Y

EPI_ISL_453827
 2020-03-25 2020-05-28
 Portugal hCoV-19/Portugal/PT0111/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T T721C C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_453828
 2020-03-25 2020-05-28
 Portugal hCoV-19/Portugal/PT0112/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T T721C C3037T T8518C G10007A C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_453832
 2020-03-25 2020-05-28
 Portugal hCoV-19/Portugal/PT0116/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C14408T A20268G A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_453833
 2020-03-25 2020-05-28
 Portugal hCoV-19/Portugal/PT0117/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- C241T G2801T C3037T C13680T C14408T C21077T A23403G C25728T CGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29754-

EPI_ISL_453834
 2020-03-25 2020-05-28
 Portugal hCoV-19/Portugal/PT0118/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C14408T A23403G GGG28881AAC A29396G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_453835
 2020-03-25 2020-05-28
 Portugal hCoV-19/Portugal/PT0119/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_453839
 2020-03-25 2020-05-28
 Portugal hCoV-19/Portugal/PT0123/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C14408T A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_453847
 2020-03-25 2020-05-28
 Portugal hCoV-19/Portugal/PT0131/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C8782T TTA20423- C26088T T28144C TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_453848
 2020-03-25 2020-05-28
 Portugal hCoV-19/Portugal/PT0132/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C8782T C19263T C26088T T28144C TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454143
 2020-03-25 2020-05-28
 Portugal hCoV-19/Portugal/PT0419/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C1059T C3037T C14408T G19684T G20560A G22201T A23403G G25217T G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454202
 2020-03-25 2020-05-28
 Portugal hCoV-19/Portugal/PT0478/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454203
 2020-03-25 2020-05-28
 Portugal hCoV-19/Portugal/PT0479/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T T721C C3037T G10007A C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454303
 2020-03-25 2020-05-28
 Portugal hCoV-19/Portugal/PT0580/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C335T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454344
 2020-03-25 2020-05-28
 Portugal hCoV-19/Portugal/PT0621/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T T12532C C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454571
 2020-03-25 2020-05-28
 Kazakhstan hCoV-19/Kazakhstan/7263/2020
 C8782T T9477A C14805T G23426T G25979T T28144C C28657T C28863T

EPI_ISL_454572
 2020-03-25 2020-05-28
 Kazakhstan hCoV-19/Kazakhstan/7341/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T

EPI_ISL_454770
 2020-03-25 2020-05-29
 Netherlands hCoV-19/Netherlands/Utrecht_10021/2020
 ATTAAA1- C241T C3037T C14183T C14408T A23403G A24508G C27046T GGG28881AAC AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_454791
 2020-03-25 2020-05-29
 Netherlands hCoV-19/Netherlands/NoordBrabant_10042/2020
 ATTAAAGGTTT1- T514C ATG1605- G6662A C11653T C16762T C16985T G22471T A23403G C23557T C25511T AAAAAA29898-

EPI_ISL_454951
 2020-03-25 2020-05-29
 China hCoV-19/Wuhan/HB-WH4-197/2020
 G18281T

EPI_ISL_455217
 2020-03-25 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_415/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C478T C3037T G12550A C14408T C16466T A20268G C20740A A23403G G29734C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455447
 2020-03-25 2020-05-29
 Poland hCoV-19/Poland/PL_P34/2020
 C241T C3037T C3587T G7936A C11572T C14408T A23403G GGG28881AAC

EPI_ISL_455700
 2020-03-25 2020-06-01
 Vietnam hCoV-19/Vietnam/VNHN_2406/2020
 C33G C37A C241T C3037T C14408T A23403G A26530G

EPI_ISL_455986
 2020-03-25 2020-06-01
 United States hCoV-19/USA/LA-EVTL143/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_455987
 2020-03-25 2020-06-01
 United States hCoV-19/USA/LA-EVTL144/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_455988
 2020-03-25 2020-06-01
 United States hCoV-19/USA/LA-EVTL145/2020
 C241T C643T C1059T C1288T C3037T C14408T C21911T A23403G G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_455990
 2020-03-25 2020-06-01
 United States hCoV-19/USA/LA-EVTL147/2020
 C241T C1059T C3037T C14408T A23403G G25563T C25667T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_456012
 2020-03-25 2020-06-01
 United States hCoV-19/USA/NY-NYUMC775/2020
 C241T C3037T C4113T C14408T A20268G A23403G C29762T

EPI_ISL_456017
 2020-03-25 2020-06-01
 United States hCoV-19/USA/NY-NYUMC780/2020
 G124A C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_456020
 2020-03-25 2020-06-01
 United States hCoV-19/USA/NY-NYUMC783/2020
 C241T C1059T C3037T C14408T A23403G G25563T C26447T

EPI_ISL_456022
 2020-03-25 2020-06-01
 United States hCoV-19/USA/NY-NYUMC785/2020
 C241T C1059T C3037T C14408T A20755C C21772T A23403G G25563T

EPI_ISL_456023
 2020-03-25 2020-06-01
 United States hCoV-19/USA/NY-NYUMC786/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_456024
 2020-03-25 2020-06-01
 United States hCoV-19/USA/NY-NYUMC787/2020
 C241T C1059T C3037T C14408T C21552T A23403G G25563T

EPI_ISL_456027
 2020-03-25 2020-06-01
 United States hCoV-19/USA/NY-NYUMC790/2020
 C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_456033
 2020-03-25 2020-06-01
 United States hCoV-19/USA/NY-NYUMC797/2020
 C241T C1059T C3037T C6541T C14408T A23403G G25563T

EPI_ISL_456039
 2020-03-25 2020-06-01
 United States hCoV-19/USA/NY-NYUMC803/2020
 C241T C3037T C14408T A17744G A23403G

EPI_ISL_456042
 2020-03-25 2020-06-01
 United States hCoV-19/USA/NY-NYUMC806/2020
 C241T C3037T C14408T A23403G G25644T GGG28881AAC

EPI_ISL_456046
 2020-03-25 2020-06-01
 United States hCoV-19/USA/NY-NYUMC810/2020
 C241T C1059T C3037T C11916T C14408T C14925T C18998T A23403G G25563T G29540A

EPI_ISL_456049
 2020-03-25 2020-06-01
 United States hCoV-19/USA/NY-NYUMC813/2020
 C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_456053
 2020-03-25 2020-06-01
 United States hCoV-19/USA/NY-NYUMC817/2020
 C241T C1059T C3037T C14408T A23403G A24051G G25563T

EPI_ISL_456060
 2020-03-25 2020-06-01
 United States hCoV-19/USA/NY-NYUMC824/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_456062
 2020-03-25 2020-06-01
 United States hCoV-19/USA/NY-NYUMC826/2020
 C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_456076
 2020-03-25 2020-06-01
 Brazil hCoV-19/Brazil/RJ-1111/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G T27299C C27644T GGG28881AAC T29148C GAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29781-

EPI_ISL_456077
 2020-03-25 2020-06-01
 Brazil hCoV-19/Brazil/RJ-1119/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G T27299C GGG28881AAC T29148C GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_456247
 2020-03-25 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1778/2020
 C241T C1059T C3037T C14408T C16260T A23403G G25563T C28821A

EPI_ISL_456321
 2020-03-25 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1984/2020
 C241T C3037T T7438C C14408T A23403G C29353T

EPI_ISL_457144
 2020-03-25 2020-06-02
 United Kingdom hCoV-19/England/EXET-135BD3/2020
 A7479G G11083T C14805T T17247C C25572T G26144T C28887T

EPI_ISL_457170
 2020-03-25 2020-06-02
 United Kingdom hCoV-19/England/EXET-135DFB/2020
 C241T C3037T C5005T C14408T A23403G GGG28881AAC

EPI_ISL_457182
 2020-03-25 2020-06-02
 United Kingdom hCoV-19/England/EXET-135F31/2020
 C241T C3037T C5005T C14408T A23403G GGG28881AAC

EPI_ISL_457658
 2020-03-25 2020-06-02
 United Kingdom hCoV-19/England/SHEF-CCFB8/2020
 G11083T C14805T G26144T

EPI_ISL_457703
 2020-03-25 2020-06-02
 Oman hCoV-19/Oman/205024123/2020
 ATTAAAGGTTTATACCTTCC1- A22T G24T C241T C3037T C14408T A23403G -28271A GGG28881AAC ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869TTC

EPI_ISL_457766 MT646106
 2020-03-25 2020-06-02
 United States SARS-CoV-2/human/USA/MD-HP00110/2020
 C241T C676T C3037T C14408T A23403G T25430C G25471S GGG28881AAC

EPI_ISL_457822 MT646093
 2020-03-25 2020-06-02
 United States SARS-CoV-2/human/USA/DC-HP00135/2020
 C241T C1059T C3037T G11083T C14134T C14408T A23403G G25563T T27384C

EPI_ISL_457825
 2020-03-25 2020-06-02
 Italy hCoV-19/Italy/AMC1-4634/2020
 ATTAAA1- C241T C3037T C14408T A23403G GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_457994
 2020-03-25 2020-06-02
 Oman hCoV-19/Oman/RESP-20-5505/2020
 C241T G4255T C14408T A20355G A23403G C25702T

EPI_ISL_458130
 2020-03-25 2020-06-03
 Spain hCoV-19/Spain/Barcelona_VH8002/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T G5230T C14408T C14481T A20268G A23403G

EPI_ISL_458283
 2020-03-25 2020-06-04
 United States hCoV-19/USA/CA-SR0413/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_459609
 2020-03-25 2020-06-04
 United Kingdom hCoV-19/Scotland/GCVR-170D4F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T2454Y C3037T C7113Y C14408T C22879A A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_459861
 2020-03-25 2020-06-04
 Chile hCoV-19/Chile/PuertoNatales-31600/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_460101 MT520176
 2020-03-25 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00016/2020
 ATTAAAGGTTTATACCTTC1- G105T C241T C3037T C14408T C18877T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460102 MT520177
 2020-03-25 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00018/2020
 ATTAAAGGTTTATAC1- T3229C C8782T A14774G C17747T A17858G C18060T A24694T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_460105 MT520180
 2020-03-25 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00042/2020
 ATTAAAGGTTTAT1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_460109 MT520184
 2020-03-25 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00067/2020
 ATTAAA1- G105T C241T C3037T C14408T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_460111 MT520186
 2020-03-25 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00031/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T T833C C1059T G1274T C3037T C14408T A23403G G25563T C27964T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460119 MT520194
 2020-03-25 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00069/2020
 ATTAAAGG1- C8782T C12415T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_460122 MT520197
 2020-03-25 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00080/2020
 ATTAAA1- C241T C3037T C14408T A23403G C28603T G28899T

EPI_ISL_460126 MT520201
 2020-03-25 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00065/2020
 ATTAAA1- C241T T833C C1059T C3037T C14408T C16616T A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_460128 MT520203
 2020-03-25 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00100/2020
 ATTAAA1- C241T T833C C1059T C3037T C9438T C14408T A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_460143 MT520218
 2020-03-25 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00054/2020
 ATTAAAG1- C241T C2416T C3037T C14408T A23403G G25563T G26233T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_460175 MT520250
 2020-03-25 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00055/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T T833C C1059T G1274T C3037T C14408T A23403G G25563T C27964T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460184 MT520259
 2020-03-25 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00089/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C3037T C14408T T20253C A23403G GGG28881AAC AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_460202 MT520277
 2020-03-25 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00076/2020
 ATTAAA1- C241T C3037T C14408T A23403G C25916T T27299C GGG28881AAC T29148C C29769T AAAA29900-

EPI_ISL_460206 MT520281
 2020-03-25 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00032/2020
 ATTAAAGG1- C241T AAGTCATTT686- T833C C1059T C3037T C14408T A23403G G25563T C27964T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_460292 MT520367
 2020-03-25 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00052/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C2416T C3037T C14408T A23403G G25563T G26233T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_460297 MT520372
 2020-03-25 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00064/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2416T C3037T G7393T T10129C C14408T A17631G C17649T A23403G G25563T G26233T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_460302 MT520377
 2020-03-25 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00017/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T C1059T C3037T C14408T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460310 MT520385
 2020-03-25 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00062/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- G105T C241T C3037T C14408T C18877T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460319 MT520394
 2020-03-25 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00015/2020
 ATTAAAGG1- C241T T2149C C2416T C3037T C14408T A23403G G25563T G26233T C27577T C29545T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_460335 MT520410
 2020-03-25 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00056/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C2416T C3037T C14408T A23403G C24096A G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_460364 MT520439
 2020-03-25 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00136/2020
 ATTAAA1- C241T C2416T C3037T G10631T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_460369 MT520444
 2020-03-25 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00225/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C3037T C14408T C18877T G19872T C21767T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_460411 MT520486
 2020-03-25 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00090/2020
 ATTAAA1- TGAGATTCCTAAAGAGGAAGT3877- C8782T C17747T A17858G C18060T A24694T T28144C

EPI_ISL_460421 MT520496
 2020-03-25 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00036/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T T4949C C11224T C14408T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460433 MT520508
 2020-03-25 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00147/2020
 ATTAAA1- TGAGATTCCTAAAGAGGAAGT3877- C8782T C17747T A17858G C18060T A24694T T28144C AAAAAAAAAAAAAAAA29888-

EPI_ISL_460448 MT520523
 2020-03-25 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00075/2020
 ATTAAA1- C241T C3037T C14408T A20268G C23271T A23403G G25978A C29640T AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_460469 MT520544
 2020-03-25 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00028/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCA1- C241T C3037T C14408T C18877T A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_460701
 2020-03-25 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_528/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T381C C3037T C14408T G20275A A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460764
 2020-03-25 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_601/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C934A C3037T C13335T C14408T A23403G G28109T G29422T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460766
 2020-03-25 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_603/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T11638C C14408T G16912T A17431G A23403G GGG28881AAC C29708T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461063
 2020-03-25 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_628/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A24862G G27505A GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461156
 2020-03-25 2020-06-06
 Netherlands hCoV-19/Netherlands/NoordBrabant_121/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C17626T A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461157
 2020-03-25 2020-06-06
 Netherlands hCoV-19/Netherlands/NoordBrabant_122/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A24862G G25677A GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_462188
 2020-03-25 2020-06-08
 Belgium hCoV-19/Belgium/CGP-0325334/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C512T C1059T C3037T G11083T G14209T C14408T A23403G T24597C G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462191
 2020-03-25 2020-06-08
 Belgium hCoV-19/Belgium/VMC-0325337/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462193
 2020-03-25 2020-06-08
 Belgium hCoV-19/Belgium/LAM-0325339/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462194
 2020-03-25 2020-06-08
 Belgium hCoV-19/Belgium/DBWC-0325340/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C19881T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462234
 2020-03-25 2020-06-08
 Belgium hCoV-19/Belgium/SC-0325380/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15277T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462256
 2020-03-25 2020-06-08
 Belgium hCoV-19/Belgium/REGA-0325402/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T23287C A23403G A23870G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462463
 2020-03-25 2020-06-08
 Bosnia and Herzegovina hCoV-19/Bosnia and Herzegovina/ChVir7360/2020
 ATTAAAGGTTTATAC1- C241T C1059T C3037T T4690C C14408T C20178T A23403G G25563T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_462464
 2020-03-25 2020-06-08
 Bosnia and Herzegovina hCoV-19/Bosnia and Herzegovina/ChVir7361/2020
 ATTAAAGGTTT1- C241T G1421A C1457T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_462465
 2020-03-25 2020-06-08
 Bosnia and Herzegovina hCoV-19/Bosnia and Herzegovina/ChVir7362/2020
 ATTAAAGGTT1- C241T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_463743
 2020-03-25 2020-06-10
 Cyprus hCoV-19/Cyprus/003/2020
 C241T A2869G C3037T C14408T C17733T A23403G GGG28881AAC C29095T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_465997
 2020-03-25 2020-06-11
 United Kingdom hCoV-19/England/20144024004/2020
 C241T C3037T C4897T T11522K C14408T A20268G C21772T A23403G C28854T

EPI_ISL_467443
 2020-03-25 2020-06-14
 South Africa hCoV-19/South Africa/KRISP-0041/2020
 ATTAAAG1- C241T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_467666
 2020-03-25 2020-06-15
 Mongolia hCoV-19/Mongolia/Imp3989/2020
 A1TTCCACTTGACTCGGACCATCTAGCGACCTCCACTTGACTCGGACCATCTAGCGACCTCCACACGACCATCTAGCGACCTCCACCSGACCATCTAGCGACCTCCACA C241T C3037T G6236K C6395T C6797T C11094T T14067C C14408T G14948K T17305Y T20859W G21881T A23403G G25423T G25447T A25491C A26530G T27013A C27015TGGAGGG A27019G AATCAC27023- A27486T AA27520GG C29272T

EPI_ISL_468015
 2020-03-25 2020-06-16
 Australia hCoV-19/Australia/SAP243/2020
 ATT1- G374A C8782T C17747T A17858G C18060T C21952T T28144C

EPI_ISL_468018
 2020-03-25 2020-06-16
 Australia hCoV-19/Australia/SAP269/2020
 C4540T C8782T T9477A C14805T C17825T G25979T T28144C C28311T C28657T C28863T

EPI_ISL_468021
 2020-03-25 2020-06-16
 Australia hCoV-19/Australia/SAP289/2020
 ATTAAA1- G11083T C14805T G26144T C26606T G28842T

EPI_ISL_468022
 2020-03-25 2020-06-16
 Australia hCoV-19/Australia/SAP263/2020
 G2875T C8782T G11230T T28144C G28167A G28878A G29742A

EPI_ISL_468023
 2020-03-25 2020-06-16
 Australia hCoV-19/Australia/SAP242/2020
 AT1- C241T C1059T C3037T C10851T C14408T A23403G G25563T

EPI_ISL_468028
 2020-03-25 2020-06-16
 Australia hCoV-19/Australia/SAP256/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27128T

EPI_ISL_468029
 2020-03-25 2020-06-16
 Australia hCoV-19/Australia/SAP273/2020
 C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_468030
 2020-03-25 2020-06-16
 Australia hCoV-19/Australia/SAP294/2020
 C4540T C8782T T9477A C14805T T21571G G25979T T28144C C28311T C28657T G28803A C28863T

EPI_ISL_468033
 2020-03-25 2020-06-16
 Australia hCoV-19/Australia/SAP237/2020
 C222- C4540T C8782T T9477A C13105T C13499T C14805T G25979T T28144C C28311T C28657T C28863T

EPI_ISL_468034
 2020-03-25 2020-06-16
 Australia hCoV-19/Australia/SAP293/2020
 AT1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T

EPI_ISL_468042
 2020-03-25 2020-06-16
 Australia hCoV-19/Australia/SAP270/2020
 C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T

EPI_ISL_468404 MT628140
 2020-03-25 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1434/2020
 A1- C241T C1059T C3037T C14408T T19570W A23403G C24381Y G25563T AATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29849-

EPI_ISL_468405 MT628141
 2020-03-25 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1435/2020
 C241T C379A C1059T C3037T C14408T A23403G G25012A G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_468406 MT628142
 2020-03-25 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1436/2020
 T17W C241T C1059T C2536T C3037T C14408T G16852T A23403G G25563T T25679K C27964T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_468520 MT628243
 2020-03-25 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1590/2020
 C241T C1059T C3037T C14408T A23403G G25563T A27528W

EPI_ISL_468728
 2020-03-25 2020-06-17
 Belgium hCoV-19/Belgium/UGent-77/2020
 T514C ATG1605- G14622T C17410T T18723C G24620T

EPI_ISL_470865
 2020-03-25 2020-06-19
 Australia hCoV-19/Australia/WA48/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C4540T C8782T T9477A C14805T C23996Y G25979T T28144C C28311T C28657T C28863T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_470867
 2020-03-25 2020-06-19
 Australia hCoV-19/Australia/WA50/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_471202
 2020-03-25 2020-06-19
 United States hCoV-19/USA/WI-WSLH-200037/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T15354C C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471212
 2020-03-25 2020-06-19
 United States hCoV-19/USA/WI-WSLH-200047/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471973
 2020-03-25 2020-06-23
 United Kingdom hCoV-19/England/EXET-1373E8/2020
 C241T C3037T C14408T A23403G G29737A

EPI_ISL_475105
 2020-03-25 2020-06-23
 Sweden hCoV-19/Sweden/20-08498/2020
 C241T C1059T C3037T A14246G C14408T A23403G G24368T G25563T T25646C

EPI_ISL_475106
 2020-03-25 2020-06-23
 Sweden hCoV-19/Sweden/20-08504/2020
 C241T C3037T C14195A C14408T A23403G

EPI_ISL_475107
 2020-03-25 2020-06-23
 Sweden hCoV-19/Sweden/20-08505/2020
 C241T C3037T C14195A C14408T A23403G

EPI_ISL_475627
 2020-03-25 2020-06-23
 United States hCoV-19/USA/CA-CSMC18/2020
 C241T C3037T C14408T C18877T G20134T A23403G G25563T

EPI_ISL_475628
 2020-03-25 2020-06-23
 United States hCoV-19/USA/CA-CSMC19/2020
 C241T C1059T C3037T G6713A G10481A C14408T A23403G G25563T

EPI_ISL_475630
 2020-03-25 2020-06-23
 United States hCoV-19/USA/CA-CSMC20/2020
 A223T C1929T C8782T C9661T C17747T A17858G C18060T C26408T T28144C TT29726-

EPI_ISL_475631
 2020-03-25 2020-06-23
 United States hCoV-19/USA/CA-CSMC21/2020
 C241T C1059T C3037T G11143A C14408T C15774T C21575T A23403G A24612G G25563T A28492T

EPI_ISL_475632
 2020-03-25 2020-06-23
 United States hCoV-19/USA/CA-CSMC22/2020
 C241T C313T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_475633
 2020-03-25 2020-06-23
 United States hCoV-19/USA/CA-CSMC23/2020
 C241T C3037T C14408T A23403G

EPI_ISL_475634
 2020-03-25 2020-06-23
 United States hCoV-19/USA/CA-CSMC24/2020
 C241T C313T C3037T T4747C A9187G G10481A C12005G C14408T T16001A A23403G GGG28881AAC

EPI_ISL_475635
 2020-03-25 2020-06-23
 United States hCoV-19/USA/CA-CSMC25/2020
 

EPI_ISL_475636
 2020-03-25 2020-06-23
 United States hCoV-19/USA/CA-CSMC26/2020
 

EPI_ISL_475638
 2020-03-25 2020-06-23
 United States hCoV-19/USA/CA-CSMC28/2020
 C241T C379A C1059T C3037T C14408T A23403G G25563T C29769T

EPI_ISL_475639
 2020-03-25 2020-06-23
 United States hCoV-19/USA/CA-CSMC29/2020
 C241T C1059T C3037T C14408T A23403G G25563T C29253T

EPI_ISL_475641
 2020-03-25 2020-06-23
 United States hCoV-19/USA/CA-CSMC30/2020
 C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_475717 MT655131
 2020-03-25 2020-06-23
 Spain SARS-CoV-2/human/ESP/HUD-70065612/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T C18348T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_475719 MT655133
 2020-03-25 2020-06-23
 Spain SARS-CoV-2/human/ESP/HUD-70063452/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A20268G A23403G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_475720 MT655134
 2020-03-25 2020-06-23
 Spain SARS-CoV-2/human/ESP/HUD-96195073/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_475816
 2020-03-25 2020-06-25
 Austria hCoV-19/Austria/CeMM0371/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T19839C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475834
 2020-03-25 2020-06-25
 Austria hCoV-19/Austria/CeMM0397/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T8296Y C14408T T22119C A23403G G24077T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475840
 2020-03-25 2020-06-25
 Austria hCoV-19/Austria/CeMM0408/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4201T C14408T A23403G C26527T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475847
 2020-03-25 2020-06-25
 Austria hCoV-19/Austria/CeMM0419/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1426T C3037T C14408T G15957T C18877T A23403G G24197T G25563T C26735T T29619A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475849
 2020-03-25 2020-06-25
 Austria hCoV-19/Austria/CeMM0421/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G T25414C G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475859
 2020-03-25 2020-06-25
 Austria hCoV-19/Austria/CeMM0432/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T6469C C14408T C14790Y A21062G A23403G C27881T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475869
 2020-03-25 2020-06-25
 Austria hCoV-19/Austria/CeMM0454/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475875
 2020-03-25 2020-06-25
 Austria hCoV-19/Austria/CeMM0466/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27813T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475876
 2020-03-25 2020-06-25
 Austria hCoV-19/Austria/CeMM0468/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T C21396T A23403G G26754T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476022
 2020-03-25 2020-06-25
 India hCoV-19/India/DRDE08/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGC1- C6312A C23929T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_476768
 2020-03-25 2020-06-25
 United States hCoV-19/USA/CA-CZB-1751/2020
 ATTAAAGGTTT1- C8782T C17747T A17858G C18060T A24694T T28144C G28812T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_476820
 2020-03-25 2020-06-26
 Singapore hCoV-19/Singapore/486/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8802T C9491T C10755T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476826
 2020-03-25 2020-06-26
 Benin hCoV-19/Benin/1022/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3096Y C12049T C14408T C14786T C15324T A20597R A23403G T28144Y G28167R TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_477619
 2020-03-25 2020-06-29
 Hungary hCoV-19/Hungary/US-2823w/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G C28486T G29477T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477703
 2020-03-25 2020-06-29
 United States hCoV-19/USA/WA-UW-2066/2020
 ATTAAAGGTTTA1- A31T AAC34TTT C8782T C17747T A17858G C18060T T28144C -29904AAAAAAAAAAAAAAAA

EPI_ISL_477704
 2020-03-25 2020-06-29
 United States hCoV-19/USA/WA-UW-2076/2020
 ATTAAAGGTTTAT1- C36T C2065T C8782T C17747T A17858G C18060T T23010C T28144C G29868R C29870A

EPI_ISL_478576
 2020-03-25 2020-06-30
 United Kingdom hCoV-19/England/NORT-284A5F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C11767T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478577
 2020-03-25 2020-06-30
 United Kingdom hCoV-19/England/NORT-284A9B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G C9223T G11083T C14805T T17247C G26144T G28655A C28657T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478578
 2020-03-25 2020-06-30
 United Kingdom hCoV-19/England/NORT-284B4D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478579
 2020-03-25 2020-06-30
 United Kingdom hCoV-19/England/NORT-284B5C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479177
 2020-03-25 2020-06-30
 United Kingdom hCoV-19/England/PORT-2D12D3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1457T A2480G C2558T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479183
 2020-03-25 2020-06-30
 United Kingdom hCoV-19/England/PORT-2D133A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A A7981G C10507T C13019T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479184
 2020-03-25 2020-06-30
 United Kingdom hCoV-19/England/PORT-2D1349/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T C19862T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479185
 2020-03-25 2020-06-30
 United Kingdom hCoV-19/England/PORT-2D1358/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18508T C19488T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479188
 2020-03-25 2020-06-30
 United Kingdom hCoV-19/England/PORT-2D1385/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5340T C14408T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479191
 2020-03-25 2020-06-30
 United Kingdom hCoV-19/England/PORT-2D13B2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16289T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479194
 2020-03-25 2020-06-30
 United Kingdom hCoV-19/England/PORT-2D13FE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1457T A2480G C2558T G11083T C14805T G26144T G29195T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479634
 2020-03-25 2020-07-01
 Canada hCoV-19/Canada/NB-218/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2210T C3037T C3792T C6255T T6564C C14408T G18811A A23403G ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_479635
 2020-03-25 2020-07-01
 Canada hCoV-19/Canada/NB-219/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C11109T C14408T A23403G G25563T C29364T ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_479636
 2020-03-25 2020-07-01
 Canada hCoV-19/Canada/NB-220/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T10771C C17747T A17858G C18060T T28144C ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_479638
 2020-03-25 2020-07-01
 Canada hCoV-19/Canada/NB-222/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1957T C3037T G10265A C14408T A23403G GGG28881AAC ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_479645
 2020-03-25 2020-07-01
 Canada hCoV-19/Canada/NB-232/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A7535G C8782T T10771C C17747T A17858G C18060T T28144C C29375T ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_479647
 2020-03-25 2020-07-01
 Canada hCoV-19/Canada/NB-234/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C14408T C21682T A23403G G25906T GGG28881AAC ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_479651
 2020-03-25 2020-07-01
 Canada hCoV-19/Canada/NB-238/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C289T C1059T C3037T C14408T A23403G G25563T ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_479671 MT679205
 2020-03-25 2020-06-29
 United States SARS-CoV-2/human/USA/NYU-VC-017/2020
 C241T C1059T C1150T C3037T C14408T A23403G G25563T

EPI_ISL_479968
 2020-03-25 2020-07-01
 Japan hCoV-19/Japan/PG-0290/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T G11083T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_479969
 2020-03-25 2020-07-01
 Japan hCoV-19/Japan/PG-0291/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T G11083T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_479970
 2020-03-25 2020-07-01
 Japan hCoV-19/Japan/PG-0292/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T C313T C3037T G11083T C14408T A23403G GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_479991
 2020-03-25 2020-07-01
 Japan hCoV-19/Japan/PG-0316/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C1059T C3037T C14408T A23403G G25563T G26730T C29708T TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_480038
 2020-03-25 2020-07-01
 Japan hCoV-19/Japan/PG-0368/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACT1- C241T C313T C3037T C14408T A23403G GGG28881AAC TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_480039
 2020-03-25 2020-07-01
 Japan hCoV-19/Japan/PG-0369/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480040
 2020-03-25 2020-07-01
 Japan hCoV-19/Japan/PG-0370/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACT1- C241T C313T C2902T C3037T C6151A C14408T A23403G GGG28881AAC GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_480083
 2020-03-25 2020-07-01
 Japan hCoV-19/Japan/PG-0415/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- G3179A C6982T C8782T G26713T T28144C C29739T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480084
 2020-03-25 2020-07-01
 Japan hCoV-19/Japan/PG-0416/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- G3179A C6982T C8782T G26713T T28144C C29739T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_480178
 2020-03-25 2020-07-01
 Japan hCoV-19/Japan/PG-0520/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_482314
 2020-03-25 2020-07-03
 United States hCoV-19/USA/OR-PROV-031/2020
 C241T C3037T A8445G C14220T C14408T A20268G A23403G

EPI_ISL_482315
 2020-03-25 2020-07-03
 United States hCoV-19/USA/OR-PROV-032/2020
 A187G C241T C1616T C3037T C14408T A23403G

EPI_ISL_482316
 2020-03-25 2020-07-03
 United States hCoV-19/USA/OR-PROV-033/2020
 A4236G G11083T C14805T T25655C G26144T

EPI_ISL_482333
 2020-03-25 2020-07-03
 United States hCoV-19/USA/OR-PROV-053/2020
 A2480G C2558T G11083T C14805T G26144T C27012T

EPI_ISL_482462
 2020-03-25 2020-07-03
 United States hCoV-19/USA/OR-PROV-227/2020
 A4236G G11083T C14805T T25655C G26144T

EPI_ISL_482465
 2020-03-25 2020-07-03
 United States hCoV-19/USA/OR-PROV-230/2020
 C241T C3037T C14408T C18877T A23403G G25563T

EPI_ISL_482585
 2020-03-25 2020-07-04
 China hCoV-19/Hangzhou/HZCDC7363/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T C15324T A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_482586
 2020-03-25 2020-07-04
 China hCoV-19/Hangzhou/HZCDC7378/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T C3037T C14408T A23403G G25563T C28977T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_484005
 2020-03-25 2020-07-08
 United Kingdom hCoV-19/England/GSTT-265D730/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1678G C3096T G11083T G13627T C14805T C15540T G26144T A28338G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484714
 2020-03-25 2020-07-08
 United States hCoV-19/USA/MI-UM-2006S000857/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T C25976A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485392
 2020-03-25 2020-07-09
 South Korea hCoV-19/South Korea/S1/2020
 ATTAAAGGTT1- A2480G C2558T G11083T C14805T C20099T G26144T AAAAAAAAAAAAAAAAAAAA29884-

EPI_ISL_485947
 2020-03-25 2020-07-10
 United States hCoV-19/USA/ID-UW-3036/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- C36T C241T T833C C1059T C3037T C13730T C14408T G22363T A23403G G25563T C27964T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_486436
 2020-03-25 2020-07-10
 Latvia hCoV-19/Latvia/052/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_487673
 2020-03-25 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5643/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T6585Y G11083T C14805T C18400Y C18512T C24704Y G26144T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487685
 2020-03-25 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5641/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C23422T T23849C C29686T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488471
 2020-03-25 2020-07-14
 United Kingdom hCoV-19/England/NORT-281FCC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G G22225T A23403G T25202K C29535T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488478
 2020-03-25 2020-07-14
 United Kingdom hCoV-19/England/NORT-282365/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G16705T C22323T A23403G T25202K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488483
 2020-03-25 2020-07-14
 United Kingdom hCoV-19/England/NORT-284A6E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7072T A8072G T10057C C14408T C16329T C17762T G19669A A23403G C27323T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488518
 2020-03-25 2020-07-14
 United Kingdom hCoV-19/England/NORT-282329/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G C4455Y C9223T G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488536
 2020-03-25 2020-07-14
 United Kingdom hCoV-19/England/NORT-28224A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C14919Y A20268G A23403G A25056R C28854T G29737A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488575
 2020-03-25 2020-07-14
 United Kingdom hCoV-19/England/NORT-2822C2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G T25202K GGG28881AAC A29031M CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488626
 2020-03-25 2020-07-14
 United Kingdom hCoV-19/England/NORT-282110/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G2585R G11083T C14805T G16206T G16861K G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488657
 2020-03-25 2020-07-14
 United Kingdom hCoV-19/England/NORT-284A13/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C2091T G7393T A10323G G11083T C14805T T17247C T25202K G26144T C28377T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488666
 2020-03-25 2020-07-14
 United Kingdom hCoV-19/England/NORT-28498F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G T25202K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488675
 2020-03-25 2020-07-14
 United Kingdom hCoV-19/England/NORT-284B89/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4886T G10097A C14408T G22801T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488731
 2020-03-25 2020-07-14
 United Kingdom hCoV-19/England/NORT-28207D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C20270T C21767T T25202K A29683T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488739
 2020-03-25 2020-07-14
 United Kingdom hCoV-19/England/NORT-28213E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G T25202K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489663
 2020-03-25 2020-07-14
 United Kingdom hCoV-19/Scotland/GCVR-170714/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_490316
 2020-03-25 2020-07-15
 Peru hCoV-19/Peru/INS-017/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAA1- C241T C3037T C14408T C18877T A23403G G25563T ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_490975
 2020-03-25 2020-07-15
 Peru hCoV-18/Peru/INS-018/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAA1- C241T C593T G2354A C3037T C14408T G15202T T22288A A23403G ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_490984
 2020-03-25 2020-07-15
 United States hCoV-19/USA/CT-UW-3425/2020
 ATTAAAGGTTTAT1- CCCAGGTAACAAACCAA19- C36T C241T C1059T C1917T C3037T C14408T C20405T A23403G G25563T TG29867AA C29870A

EPI_ISL_490994
 2020-03-25 2020-07-15
 United States hCoV-19/USA/ID-UW-3335/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T T833C C1059T C3037T G13435A C14408T A23403G G25563T C27964T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_490995
 2020-03-25 2020-07-15
 United States hCoV-19/USA/ID-UW-3416/2020
 ATTAAAGGTTTATACCTTCCCAGG1- AAC34TTT C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_490996
 2020-03-25 2020-07-15
 United States hCoV-19/USA/ID-UW-3481/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- C36T G2840A C8782T C13255T C17747T A17858G C18060T C24034T A26045G C27964T T28144C AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_491001
 2020-03-25 2020-07-15
 United States hCoV-19/USA/OR-UW-3406/2020
 ATTAAAG1- C36T C241T C1059T C1063T C3037T C14408T G19106A A23403G G25563T C29870M

EPI_ISL_491102
 2020-03-25 2020-07-15
 United States hCoV-19/USA/SC-DHEC-0048/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAA1- T490A C3177T C8782T T18736C C24034T T26729C G28077C T28144C A29700G TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_491427
 2020-03-25 2020-07-16
 Peru hCoV-19/Peru/INS-021/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAA1- C8782T C17747T A17858G C18060T C18400T A24694T T25837Y T28144C ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_491429
 2020-03-25 2020-07-16
 Peru hCoV-19/Peru/INS-024/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAA1- C241T C8782T T9477A A10323G C14805T G25979T T28144C C28657T C28863T ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_491457
 2020-03-25 2020-07-17
 Costa Rica hCoV-19/Costa Rica/INC-0046/2020
 ATTAAAGGTTTATACCTTCCCAG1- A27C C241T C1059T C3037T A3254T C4113T C11916T C14408T C18998T A23403G G25563T G29540A CCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29835-

EPI_ISL_491911 MT776405
 2020-03-25 2020-07-17
 United States SARS-CoV-2/human/USA/VA_NIDDL_2686/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G C24989S G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491912 MT776406
 2020-03-25 2020-07-17
 United States SARS-CoV-2/human/USA/VA_NIDDL_2689/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1918C C3037T C14408T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491913 MT776407
 2020-03-25 2020-07-17
 United States SARS-CoV-2/human/USA/VA_NIDDL_2702/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C6040T C6582T C8782T G12478A T18736C C24034T T26729C G28077C T28144C C28896G A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_494611
 2020-03-25 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1451/2020
 ATTAAAG1- C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_494613
 2020-03-25 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1453/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C379A C1059T C3037T C6027A C14408T A23403G G25563T

EPI_ISL_494716
 2020-03-25 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1651/2020
 ATTAAA1- C241T C3037T C14408T C18877T A23403G G25563T

EPI_ISL_494723
 2020-03-25 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1662/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T C1887T C3037T C14408T A23403G G25563T

EPI_ISL_494740
 2020-03-25 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1682/2020
 ATTA1- C241T C3037T C14408T C18877T A23403G G25563T

EPI_ISL_494743
 2020-03-25 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1685/2020
 ATTAAAG1- C241T C3037T C14408T C18877T A23403G G25563T

EPI_ISL_494744
 2020-03-25 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1687/2020
 ATTAAAGGT1- C241T C1059T C1887T C3037T C14408T A23403G G25563T

EPI_ISL_495371 MT791907
 2020-03-25 2020-07-22
 United States SARS-CoV-2/human/USA/FL-BPHL-0465/2020
 AT1- C241T C1059T C3037T C14408T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_495612
 2020-03-25 2020-07-23
 United States hCoV-19/USA/MN-MDH-1313/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- A2480G C2558T C10908T G11083T C14805T G26144T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_495615
 2020-03-25 2020-07-23
 United States hCoV-19/USA/MN-MDH-1316/2020
 ATTAAAGG1- C241T C3037T C14408T A20268G A23403G G29734C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_495617
 2020-03-25 2020-07-23
 United States hCoV-19/USA/MN-MDH-1318/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C36T C241T C3037T C14408T A20268G A23403G G24368T C27739T G29736- GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_495618
 2020-03-25 2020-07-23
 United States hCoV-19/USA/MN-MDH-1319/2020
 AT1- C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_495620
 2020-03-25 2020-07-23
 United States hCoV-19/USA/MN-MDH-1321/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- A2480G C2558T C7139T G11083T C14805T G26144T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_495621
 2020-03-25 2020-07-23
 United States hCoV-19/USA/MN-MDH-1322/2020
 ATTA1- C241T C1059T C3037T C3817T C14408T T19527C A23403G G25563T C27964T C28099T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_495622
 2020-03-25 2020-07-23
 United States hCoV-19/USA/MN-MDH-1323/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C1059T C3037T C14408T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_495623
 2020-03-25 2020-07-23
 United States hCoV-19/USA/MN-MDH-1324/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C3037T A7535G C14408T A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_495625
 2020-03-25 2020-07-23
 United States hCoV-19/USA/MN-MDH-1326/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T G17259T A20755C C21005T A23403G G25563T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_495626
 2020-03-25 2020-07-23
 United States hCoV-19/USA/MN-MDH-1327/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C8782T C17747T A17858G C18060T C21614T A24694T T28144C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_495627
 2020-03-25 2020-07-23
 United States hCoV-19/USA/MN-MDH-1328/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T C3037T C14408T A23403G G25563T TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856C

EPI_ISL_496373
 2020-03-25 2020-07-24
 Mexico hCoV-19/Mexico/ALSR-1712/2020
 ATTA1- C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_496924
 2020-03-25 2020-07-24
 United States hCoV-19/USA/MN-MDH-1338/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T C14408T C18877T A23403G G25563T T26011C GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_496925
 2020-03-25 2020-07-24
 United States hCoV-19/USA/MN-MDH-1339/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C313T C3037T C14408T A23403G GGG28881AAC A29154T C29614T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_496926
 2020-03-25 2020-07-24
 United States hCoV-19/USA/MN-MDH-1340/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- A38G C241T C313T C3037T C14408T A23403G GGG28881AAC A29154T C29614T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_496927
 2020-03-25 2020-07-24
 United States hCoV-19/USA/MN-MDH-1341/2020
 ATTAAAGGTTTA1- C241T C1059T C3037T C14408T A23403G G25563T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_498152
 2020-03-25 2020-07-26
 Colombia hCoV-19/Colombia/87968/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T17181C C18747T C18877T G22992T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498154
 2020-03-25 2020-07-26
 Colombia hCoV-19/Colombia/88496/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G T23443C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498155
 2020-03-25 2020-07-26
 Colombia hCoV-19/Colombia/88612/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_500502
 2020-03-25 2020-07-29
 United States hCoV-19/USA/CT-UW-3488/2020
 ATTAAAGGTTTATAC1- CCCAGGTAACAAACCAA19- C36T AAGTCATTT686- C10030T A10323G -11075TTT G11083T C14805T C16466T T17247C C19854T G26144T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_501184
 2020-03-25 2020-07-31
 Malaysia hCoV-19/Malaysia/1399/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C6312A G11083T C13730T C23929T C28311T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_501185
 2020-03-25 2020-07-31
 Malaysia hCoV-19/Malaysia/1497/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T G6446A C14408T C23277T A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_501186
 2020-03-25 2020-07-31
 Malaysia hCoV-19/Malaysia/1713/2020
 ATTAAAGGTTTATACC1- G23A A29G C6312A T7621C G11083T C13730T G18756A C23929T C25549T C28311T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_501187
 2020-03-25 2020-07-31
 Malaysia hCoV-19/Malaysia/1798/2020
 ATTA1- G1135T C8090T C14636T G20438A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_501565
 2020-03-25 2020-07-31
 United Kingdom hCoV-19/England/BRIS-130FEB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C18486T G25726T G29032A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501590
 2020-03-25 2020-07-31
 United Kingdom hCoV-19/England/BRIS-130F90/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501595
 2020-03-25 2020-07-31
 United Kingdom hCoV-19/England/BRIS-130F72/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6573T C12025T C14408T A23403G C25528T A27738C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_506974
 2020-03-25 2020-08-02
 South Korea hCoV-19/Korea/KCDC2180/2020
 ATT1- C4320A C6312A G11083T C13730T C23929T C28311T

EPI_ISL_506975
 2020-03-25 2020-08-02
 South Korea hCoV-19/Korea/KCDC2181/2020
 ATTAAA1- G5572T G11083T G13564T C14805T G15708T G26144T

EPI_ISL_507025 MT820483
 2020-03-25 2020-07-30
 Saudi Arabia SARS-CoV-2/human/SAU/KAIMRC60/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C14408T C18877T A23403G G25563T C26735T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_507070
 2020-03-25 2020-08-03
 United Kingdom hCoV-19/England/LOND-124D239/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A20268G A23403G AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_507071
 2020-03-25 2020-08-03
 United Kingdom hCoV-19/England/LOND-124D248/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C6406T C14408T A23403G C25771T C26534T GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_507072
 2020-03-25 2020-08-03
 United Kingdom hCoV-19/England/LOND-124D257/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- A2480G C2558T A3933C G11083T C14805T G26144T C28887T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_507142
 2020-03-25 2020-08-03
 United Kingdom hCoV-19/England/PORT-2D2418/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16289T T17568C A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507143
 2020-03-25 2020-08-03
 United Kingdom hCoV-19/England/PORT-2D2445/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C19170T G19509A A23403G G28077T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507146
 2020-03-25 2020-08-03
 United Kingdom hCoV-19/England/PORT-2D2481/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1457T A2480G C2558T G11083T A12286G C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507147
 2020-03-25 2020-08-03
 United Kingdom hCoV-19/England/PORT-2D2490/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16289T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507148
 2020-03-25 2020-08-03
 United Kingdom hCoV-19/England/PORT-2D24AF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1457T A2480G C2558T G9479T G11083T C14805T C16646T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507149
 2020-03-25 2020-08-03
 United Kingdom hCoV-19/England/PORT-2D24BE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1457T A2480G C2558T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507690
 2020-03-25 2020-08-03
 United States hCoV-19/USA/MI-MDHHS-SC21436/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C14408T C20436Y A23403G G25563T GTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29828-

EPI_ISL_507695
 2020-03-25 2020-08-03
 United States hCoV-19/USA/MI-MDHHS-SC21441/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C1059T C2773T C3037T A5011M C14408T G19800A A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507717
 2020-03-25 2020-08-03
 United States hCoV-19/USA/MI-MDHHS-SC21463/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507914
 2020-03-25 2020-08-03
 United States hCoV-19/USA/MI-MDHHS-SC21138/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C1059T C3037T C14408T A23403G G25563T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_507925
 2020-03-25 2020-08-03
 United States hCoV-19/USA/MI-MDHHS-SC21149/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C3264T C14408T A23403G G25563T TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_508884
 2020-03-25 2020-08-04
 France hCoV-19/France/ARA14226/2020
 ATTAAAG1- C241T C2416T C3037T G8371T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_508911
 2020-03-25 2020-08-04
 France hCoV-19/France/PACA01926/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C241T C344T A618G C3037T C4901T C14408T C15324T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_508986
 2020-03-25 2020-08-04
 France hCoV-19/France/ARA13746/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C12171T C14408T A23403G G25563T G27289T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_509009
 2020-03-25 2020-08-04
 France hCoV-19/France/ARA16647/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCT1- C241T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_509738 MT846442
 2020-03-25 2020-08-05
 United States SARS-CoV-2/human/USA/FL-BPHL-0680/2020
 ATTAAAGGTTTATACC1- C241T C3037T C14408T C18877T C21727T A23403G G25563T G27987T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_509739 MT846443
 2020-03-25 2020-08-05
 United States SARS-CoV-2/human/USA/FL-BPHL-0681/2020
 ATTAAAGGTTTATACC1- C241T C3037T C14408T C18877T C21727T A23403G G25563T G27987T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_509742 MT846446
 2020-03-25 2020-08-05
 United States SARS-CoV-2/human/USA/FL-BPHL-0684/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T C14408T A23403G G25563T A28885G AAA29901-

EPI_ISL_510932
 2020-03-25 2020-08-07
 Portugal hCoV-19/Portugal/PT0673/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3653T C14408T C21242T GCTTTA22289- A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_510937
 2020-03-25 2020-08-07
 Portugal hCoV-19/Portugal/PT0678/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C7604T G13617T C14408T A20268G A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_510939
 2020-03-25 2020-08-07
 Portugal hCoV-19/Portugal/PT0680/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G922A C3037T C14408T C21242T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_510941
 2020-03-25 2020-08-07
 Portugal hCoV-19/Portugal/PT0682/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G922A C3037T C14408T C21242T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_510976
 2020-03-25 2020-08-07
 Portugal hCoV-19/Portugal/PT0717/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511025
 2020-03-25 2020-08-07
 Portugal hCoV-19/Portugal/PT0766/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T G2808A C3037T G11083T C14408T A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511310
 2020-03-25 2020-08-07
 Portugal hCoV-19/Portugal/PT1351/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511311
 2020-03-25 2020-08-07
 Portugal hCoV-19/Portugal/PT1352/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTA1- C241T C3037T C4832T C14408T A23403G GGG28881AAC C29205T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511312
 2020-03-25 2020-08-07
 Portugal hCoV-19/Portugal/PT1353/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T C3037T C3140T C14408T A23403G G24077T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511313
 2020-03-25 2020-08-07
 Portugal hCoV-19/Portugal/PT1354/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCT1- C241T AAGTCATTT686- C3037T C3140T T4033C C14408T A23403G G24077T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511314
 2020-03-25 2020-08-07
 Portugal hCoV-19/Portugal/PT1355/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTA1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511316
 2020-03-25 2020-08-07
 Portugal hCoV-19/Portugal/PT1357/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T G17259A A20268G A23403G G29734C TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511331
 2020-03-25 2020-08-07
 Portugal hCoV-19/Portugal/PT1372/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C2399T C3037T C14408T A23403G C27509T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511332
 2020-03-25 2020-08-07
 Portugal hCoV-19/Portugal/PT1373/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C2399T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511333
 2020-03-25 2020-08-07
 Portugal hCoV-19/Portugal/PT1374/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- A2480G C2558T G11083T C14805T G26144T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511334
 2020-03-25 2020-08-07
 Portugal hCoV-19/Portugal/PT1375/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- A2480G C2558T G11083T C14805T G26144T C26895T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511366
 2020-03-25 2020-08-07
 Portugal hCoV-19/Portugal/PT1407/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C13329T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511369
 2020-03-25 2020-08-07
 Portugal hCoV-19/Portugal/PT1410/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511371
 2020-03-25 2020-08-07
 Portugal hCoV-19/Portugal/PT1412/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C3140T C13059T C14408T G21641A A23403G G24077T C29555T G29742T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511386
 2020-03-25 2020-08-07
 Portugal hCoV-19/Portugal/PT1427/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511401
 2020-03-25 2020-08-07
 Portugal hCoV-19/Portugal/PT1442/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511403
 2020-03-25 2020-08-07
 Portugal hCoV-19/Portugal/PT1444/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T C18526T A23403G GGG28881AAC C29296T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511513
 2020-03-25 2020-08-08
 Portugal hCoV-19/Portugal/PT0964/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T C14408T C19884T A23403G G26792T C26892T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511514
 2020-03-25 2020-08-08
 Portugal hCoV-19/Portugal/PT0965/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C4090T G10265A C14408T A15972G C17934T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511515
 2020-03-25 2020-08-08
 Portugal hCoV-19/Portugal/PT0966/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3045T C3140T C14408T A23403G G24077T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511551
 2020-03-25 2020-08-08
 Portugal hCoV-19/Portugal/PT1004/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511727
 2020-03-25 2020-08-08
 Portugal hCoV-19/Portugal/PT1182/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C8782T G22468T T28144C G28878A G29742A TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511728
 2020-03-25 2020-08-08
 Portugal hCoV-19/Portugal/PT1183/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C1059T C3037T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511729
 2020-03-25 2020-08-08
 Portugal hCoV-19/Portugal/PT1184/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511730
 2020-03-25 2020-08-08
 Portugal hCoV-19/Portugal/PT1185/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G C26340T GGG28881AAC A29391G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511770
 2020-03-25 2020-08-08
 Portugal hCoV-19/Portugal/PT1227/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T G23311T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_512801 MT873898
 2020-03-25 2020-08-11
 United States SARS-CoV-2/human/USA/FL-USAFSAM-S033/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C241T C2416T C3037T T12112C C14408T G21974C A23403G G25563T G26233T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_514645 MT892992
 2020-03-25 2020-08-17
 United States SARS-CoV-2/human/USA/MN-MDH-1426/2020
 ATTAAAGGTTT1- C241T C3037T C14408T C18877T A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_514646 MT892993
 2020-03-25 2020-08-17
 United States SARS-CoV-2/human/USA/MN-MDH-1427/2020
 A1- C8782T C17747T A17858G C18060T A24694T C25549T T28144C G28812T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_514647 MT892994
 2020-03-25 2020-08-17
 United States SARS-CoV-2/human/USA/MN-MDH-1428/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- T490A C3177T C8782T T18736C C24034T T26729C C27635T G28077C T28144C A29567C A29700G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_514658 MT893005
 2020-03-25 2020-08-17
 United States SARS-CoV-2/human/USA/MN-MDH-1439/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- A38G C241T C1059T C3037T C14408T C14925T A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_514659 MT893006
 2020-03-25 2020-08-17
 United States SARS-CoV-2/human/USA/MN-MDH-1440/2020
 ATTAAAGGTTTATA1- C241T C1059T C3037T C5907T C14408T A23403G G25563T G29773T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_514660 MT893007
 2020-03-25 2020-08-17
 United States SARS-CoV-2/human/USA/MN-MDH-1441/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G114A C241T T833C C1059T C3037T T12118C C14408T A23403G G25563T C27964T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_514662 MT893009
 2020-03-25 2020-08-17
 United States SARS-CoV-2/human/USA/MN-MDH-1443/2020
 ATTA1- A2480G C2558T C10908T G11083T C14805T G26144T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_515333
 2020-03-25 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0051/2020
 ATTAAA1- C8782T C17747T A17858G C18060T G24815C T28144C

EPI_ISL_515528
 2020-03-25 2020-08-19
 Brazil hCoV-19/Brazil/SP-625/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T C14408T A23403G T27299C GGG28881AAC T29148C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_515550
 2020-03-25 2020-08-19
 Brazil hCoV-19/Brazil/SP-636/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C3037T A4664M C14408T A23403G T27299C GGG28881AAC T29148C GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861T

EPI_ISL_515900
 2020-03-25 2020-08-20
 United States hCoV-19/USA/CA-CDPH007/2020
 ATTA1- G18043A G29711T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_515905
 2020-03-25 2020-08-20
 United States hCoV-19/USA/CA-CDPH012/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T G10793T C14408T C18877T A23403G G25563T G25660C T26966Y TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_516805
 2020-03-25 2020-08-24
 Singapore hCoV-19/Singapore/833/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C8782T T18736C G19684T C24034T T26729C C27635T G28077C T28144C A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_517251
 2020-03-25 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A9045/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G1440A G2891R C5512T C10507T

EPI_ISL_517252
 2020-03-25 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A9054/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G C25350T

EPI_ISL_517253
 2020-03-25 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A9063/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G1440A G2891R C4668T G24197A

EPI_ISL_517254
 2020-03-25 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A9072/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T G21624T A23403G GGG28881AAC C29870A

EPI_ISL_517255
 2020-03-25 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A9081/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G A26530R G28739T C29095T

EPI_ISL_517256
 2020-03-25 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A9090/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T G16741A C17104T A20268G A23403G G29734C

EPI_ISL_517259
 2020-03-25 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A90CD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC C29870A

EPI_ISL_517262
 2020-03-25 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A9106/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C875A C2416T C3037T T4885C G9479K C10448Y C14408T C14786T G20578T A23403G G25563T

EPI_ISL_517263
 2020-03-25 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A9115/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G T25679A

EPI_ISL_517264
 2020-03-25 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A9124/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T A11755G C14408T A23403G C27046T GGG28881AAC

EPI_ISL_517266
 2020-03-25 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A9142/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G13564T C14408T C17746Y A23403G C29870A

EPI_ISL_517267
 2020-03-25 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A9151/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G1440A G2891R C4668T G24197A C29870A

EPI_ISL_517269
 2020-03-25 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A917F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A20268G A23403G G28960T

EPI_ISL_517273
 2020-03-25 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A91BB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G GGG28881AAC C29870A

EPI_ISL_517275
 2020-03-25 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A91E8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A1515G G5539T C9223T G11083T G14131A C14805T T17247C G26144T C29870A

EPI_ISL_517276
 2020-03-25 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A91F7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T C3037T T13006Y C14408T C19186T A23403G G25563T C25688T C29870A

EPI_ISL_517278
 2020-03-25 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A9212/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C2416T C3037T C14408T G20578T T23119C A23403G G25563T

EPI_ISL_517279
 2020-03-25 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A9221/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T C15237Y A23403G GGG28881AAC

EPI_ISL_517281
 2020-03-25 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A924F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G94K C241T C3037T C14408T C18877Y A23403G G25563K GGG28881RRS C28887Y C29870A

EPI_ISL_517286
 2020-03-25 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A929A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G10097A T13216G C14408T A23403G C23731T GGG28881AAC C29870A

EPI_ISL_517287
 2020-03-25 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A92A9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C884T C3037T G10097A C14408T G21305A A23403G C23731T C27513T GGG28881AAC C29870A

EPI_ISL_517292
 2020-03-25 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A92F4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1385T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_517293
 2020-03-25 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A9300/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- ATG1605- C4893T C20270T A29683T C29870A

EPI_ISL_517301
 2020-03-25 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A99A4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C8318T G10097A C14408T A23403G C23731T C24387T T26073C G28580T GGG28881AAC

EPI_ISL_517305
 2020-03-25 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A99E0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T T17169Y C18877T A23403G G25563T

EPI_ISL_517311
 2020-03-25 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A9A47/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_517318
 2020-03-25 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A9AB0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- ATG1605- A10982G C22295Y TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_517331
 2020-03-25 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A9B9F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C203T C241T C3037T C12138T C14408T A23403G GGG28881AAC

EPI_ISL_517335
 2020-03-25 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A9BEA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G1440A G2891R G8785A

EPI_ISL_517339
 2020-03-25 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A9C23/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C203T C241T C3037T C12138T C14408T A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_517346
 2020-03-25 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A9C9C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T C15763T A23403G C25587T C27046T C28344A GGG28881AAC

EPI_ISL_517351
 2020-03-25 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A9CE7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C203T C241T C3037T C12138T C14408T A23403G GGG28881AAC

EPI_ISL_517357
 2020-03-25 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A9D4E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A2480G C2558T G11083T C14805T G26144T

EPI_ISL_517368
 2020-03-25 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A9E1E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A2480G C2558T A8842G G11083T C14805T G26144T C26994T G29414A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_518864 MT920003
 2020-03-25 2020-08-25
 United States SARS-CoV-2/human/USA/MN-MDH-1470/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T G5816A C14408T A23403G C25521T G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_518872 MT920011
 2020-03-25 2020-08-25
 United States SARS-CoV-2/human/USA/MN-MDH-1478/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A20268G A23403G GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_518873 MT920012
 2020-03-25 2020-08-25
 United States SARS-CoV-2/human/USA/MN-MDH-1479/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T T5707C C14408T A20268G A23403G GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_518896 MT920036
 2020-03-25 2020-08-25
 United States SARS-CoV-2/human/USA/MN-MDH-1503/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C6120T G12038A C14408T A23403G G25563T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_518897 MT920037
 2020-03-25 2020-08-25
 United States SARS-CoV-2/human/USA/MN-MDH-1504/2020
 ATT1- A38R C241T C1059T C3037T C14408T T19527C A19821G G22346T A23403G G25563T C27964T C28099T C29722T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_518898 MT920038
 2020-03-25 2020-08-25
 United States SARS-CoV-2/human/USA/MN-MDH-1505/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C14408T T15354C C18877T A23403G G25563T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_523938
 2020-03-25 2020-08-27
 Germany hCoV-19/Germany/NW-67/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A A15596G C19547T C27625T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_523942
 2020-03-25 2020-08-27
 Germany hCoV-19/Germany/NW-71/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_523971
 2020-03-25 2020-08-27
 Brazil hCoV-19/Brazil/SP-174/2020
 ATTAAAGGTTTATACCTTCCC1- C241T C3037T C14408T A23403G G25088T C25820T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_523982
 2020-03-25 2020-08-27
 Brazil hCoV-19/Brazil/SP-190/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C12053T C14408T A23403G G25088T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_525633
 2020-03-25 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-30673-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C7105T C14408T T15264C A23403G TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_527876
 2020-03-25 2020-09-05
 Nigeria hCoV-19/Nigeria/ED04-CV158/2020
 ATTAAA1- C8782T G11230T T28144C G28167A G28878A G29742A CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_529219
 2020-03-25 2020-09-10
 United Kingdom hCoV-19/England/BIRM-61B57/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- A1904G C5826T C8090T C10789T T14298C C17439T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529220
 2020-03-25 2020-09-10
 United Kingdom hCoV-19/England/BIRM-61BB1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- A1904G G5629T C5826T C8090T C10789T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529598
 2020-03-25 2020-09-10
 United Kingdom hCoV-19/England/BIRM-61B39/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A C10507T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529601
 2020-03-25 2020-09-10
 United Kingdom hCoV-19/England/BIRM-61BFD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529603
 2020-03-25 2020-09-10
 United Kingdom hCoV-19/England/BIRM-61C45/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G11083T C14805T G26144T G28396A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529607
 2020-03-25 2020-09-10
 United Kingdom hCoV-19/England/BIRM-61D51/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1305C C3037T C10626T C14408T C18877T A23403G G24197T G25563T C26735T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529611
 2020-03-25 2020-09-10
 United Kingdom hCoV-19/England/BIRM-61E12/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC C29466T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530046
 2020-03-25 2020-09-10
 Spain hCoV-19/Spain/MD-LP42/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_530241
 2020-03-25 2020-09-11
 Australia hCoV-19/Australia/QLD962/2020/P1
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C3037T C13730T C14408T A23403G G25429T

EPI_ISL_530242
 2020-03-25 2020-09-11
 Australia hCoV-19/Australia/QLD960/2020/P1
 ATTAA1- C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_530268
 2020-03-25 2020-09-11
 Australia hCoV-19/Australia/QLD988/2020/P1
 ATT1- C1670T C8782T C17747T A17858G C18060T C23430T T28144C AAA29901-

EPI_ISL_534813
 2020-03-25 2020-09-14
 United Kingdom hCoV-19/England/OXON-B2D7F/2020
 A1515G C9223T C10277T G11083T C14805T T17247C G26144T

EPI_ISL_534855
 2020-03-25 2020-09-14
 United Kingdom hCoV-19/England/OXON-B339A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCT1- T137K C241T C3037T C14408T G15646K A23403G G24781T GGG28881AAC AA29890RR AAAAAAAAAA29894-

EPI_ISL_534906
 2020-03-25 2020-09-14
 United Kingdom hCoV-19/England/OXON-B3BCF/2020
 ATTAAAGGTTTATAC1- C241T C3037T C7834T C14408T G21724T A23403G GGG28881AAC A29903-

EPI_ISL_536141
 2020-03-25 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00236595/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C3037T C14408T C17104Y A23403G G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_536142
 2020-03-25 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00236598/2020
 ATTAAAGGTT1- C241T C1059T C3037T C14408T A23403G G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_536145
 2020-03-25 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00236653/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C10615T C14408T C20480Y A23403G TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_536146
 2020-03-25 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00236657/2020
 ATTAAAGGTTTATACC1- A2480G C2558T C3096T A3706R C9170T G11083T C14805T G26144T A28207T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_536148
 2020-03-25 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00236781/2020
 ATTAAA1- A2480G C2558T C3096T C9170T G11083T C14805T G26144T A28207T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_536150
 2020-03-25 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00236805/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T C14408T A23403G G25563T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_536151
 2020-03-25 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00236905/2020
 ATTAAAGGTTTATACC1- C241T C3037T C8208T G9267A T9667C C14408T A23403G G25947T C26456Y G28361A GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_536152
 2020-03-25 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00236922/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C8208T G9267A T9667C G13514A C14408T A23403G G25947T T28114C G28361A GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_536153
 2020-03-25 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00236940/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C3037T C8208T G9267A T9667C C14408T C15324T A23403G G25947T G28361A GGG28881AAC GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_536154
 2020-03-25 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00236943/2020
 AT1- C241T C3037T C8208T G9267A T9667C C14408T A23403G G25947T G28361A GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_536157
 2020-03-25 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00237011/2020
 ATTAA1- C241T C3037T C8208T G9267A T9667C C14408T A23403G G25947T G28361A GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_536158
 2020-03-25 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00237078/2020
 A1- C241T C2416T C3037T C5055T C14408T G19292T A23403G G25538T G25563T C26681Y GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_536159
 2020-03-25 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00237080/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T C3037T C14408T C15324T A23403G C25433T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_536160
 2020-03-25 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00237091/2020
 A1- C241T C2416T C3037T C5055T C14408T G19292T A23403G G25538T G25563T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_536163
 2020-03-25 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00237109/2020
 ATTAAAGGTTT1- C241T C1059T C1387T C3037T C14408T A20755C C20936T A23403G G25563T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_536166
 2020-03-25 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00237135/2020
 A1- C241T C2416T C3037T C5055T C8814Y C14408T A23403G G25563T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_536168
 2020-03-25 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00237217/2020
 ATTAAA1- C241T C3037T C14408T A20268G A23403G C28854T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_536169
 2020-03-25 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00237242/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T C14408T A20268G A23403G C28854T TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_536171
 2020-03-25 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00237287/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C3037T C14408T C15579Y A19376R A23403G G25217T G25563T G28487S C29835T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_536173
 2020-03-25 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00237312/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T C14408T C15324T A23403G A23572R TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_536174
 2020-03-25 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00237340/2020
 ATTAAAGGTTTA1- C241T C1059T C3037T C14408T A23403G G25563T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_536176
 2020-03-25 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00237365/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T AAGTCATTT686- C3037T C14408T A20268G A23403G C26313T C28253T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_536178
 2020-03-25 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00237372/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A2480G C2558T C3096T C9170T G11083T C14805T G26144T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_536179
 2020-03-25 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00237374/2020
 ATTAAAGGT1- C241T AAGTCATTT686- C3037T C14408T A20268G A23403G C26313T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_536180
 2020-03-25 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00237419/2020
 ATTAAAGGTTTATA1- C241T C3037T C14408T C15324T A23403G C25433T G27750S GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_536181
 2020-03-25 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00237465/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T A2018G C3037T C11396T C14408T T21995C A23403G G25563T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_536182
 2020-03-25 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00237490/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C3037T C14408T C15324T A23403G GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_536183
 2020-03-25 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00237503/2020
 ATTAAAGGTTTAT1- C241T G662T C3037T C14408T C15324T A23403G C25433T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_536186
 2020-03-25 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00237577/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- A2480G C2558T G11083T C14805T G26144T G28086R T28088W G29742T TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_536187
 2020-03-25 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00237589/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T AAGTCATTT686- C1059T A2419G G2808A C3037T C14408T A23403G G25563T A26433G CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_536195
 2020-03-25 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00237841/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T A264W C3037T C6037T C14408T C15324T A23403G C25433T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_536196
 2020-03-25 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00237878/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T C6037T C14408T C15324T A23403G C25433T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_536198
 2020-03-25 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00237886/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T C8208T G9267A T9667C C14408T A23403G A25897T G25947T G28361A GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_536200
 2020-03-25 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00237930/2020
 ATTAAA1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_536201
 2020-03-25 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00237942/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C14408T A23403G GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_536202
 2020-03-25 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00237972/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C3037T C6031A C14408T C19901T A23403G G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_536207
 2020-03-25 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00238342/2020
 ATTAAAG1- G11083T C14805T T17247C G17721T G26144T

EPI_ISL_536208
 2020-03-25 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00238445/2020
 ATTA1- C241T C1059T C2507T C3037T C14408T A23403G C23718T G25563T G28368A GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_536209
 2020-03-25 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00238518/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C3037T C4999Y C14408T A23403G G25563T C29109A TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_536260
 2020-03-25 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00239991/2020
 ATTAAAG1- C241T C3037T C14408T G14874T A23403G GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_536399
 2020-03-25 2020-09-15
 Colombia hCoV-19/Colombia/ANT-UdeA-200325-01/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536789
 2020-03-25 2020-09-16
 New Zealand hCoV-19/New Zealand/20VR1765/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C3096T G11083T C12781T G13627T C14805T C15540T G17944T G26144T A28338G A29731G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538321
 2020-03-25 2020-09-16
 Canada hCoV-19/Canada/ON-OICR-SLB2787/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G11083T C14805T T17247C G26144T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_538322
 2020-03-25 2020-09-16
 Canada hCoV-19/Canada/ON-OICR-SLB2788/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C18877T A23403G G25563T T27922Y TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_538324
 2020-03-25 2020-09-16
 Canada hCoV-19/Canada/ON-OICR-SLB2790/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T A5560G C14408T C22550T A23403G C27046T GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_538325
 2020-03-25 2020-09-16
 Canada hCoV-19/Canada/ON-OICR-SLB2791/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2416T C3037T C5055T C14408T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_538455
 2020-03-25 2020-09-17
 Singapore hCoV-19/Singapore/924/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C14645T C14768T A23403G G25429T C28045T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538456
 2020-03-25 2020-09-17
 Singapore hCoV-19/Singapore/925/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T A7161G C8782T T18736C G19684T C24034T A24652T T26729C C27635T G28077C T28144C A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538457
 2020-03-25 2020-09-17
 Singapore hCoV-19/Singapore/323nan/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C10833T A13631G C19961A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538934
 2020-03-25 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9E76/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241Y C3037Y G10097R G11083K C11300Y C14408Y C14805Y T17247Y A23403R C23731Y G26144K G28580K A28761W GGG28881RRS CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538971
 2020-03-25 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9E85/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8964T G10097A T13216G C14408T C18486T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539008
 2020-03-25 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8CE6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14025T C14408T C18877T A23403G G24197T G25563T G26158T C26735T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539032
 2020-03-25 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A884C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539064
 2020-03-25 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8590/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- A1904G C5826T C8090T C10789T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539109
 2020-03-25 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8A64/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8140Y C14408T C17104T A20268G A23403G G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539127
 2020-03-25 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8C13/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T T7375C G11083T C14805T C21952T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539153
 2020-03-25 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A86E8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C2558T G11083T C14805T G26144T G28851T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539156
 2020-03-25 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8518/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539305
 2020-03-25 2020-09-17
 Netherlands hCoV-19/env/Netherlands/UT-92503-N/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T9477A C14408T A16061C G25273T A25575C C27128T T28144C GGG28881AAC TCAGCGTTCTTCGGAATGTCGCGCATTGGCATGGAAGTCACACCTTCGGGAACGTGGTTGACCTACACAGGTGCCATCAAATTGGATGACAAAGATCCAAATTTCAAAGATCAAGTCATTTTGCTGAATAAGCATATTGACGCATACAAAACATTCCCACCAACAGAGCCTAAAAAGGACAAAAAGAAGAAGGCTGATGAAACTCAAGCCTTACCGCAGAGACAGAAGAAACAGCAAACTGTGACTCTTCTTCCTGCTGCAGATTTGGATGATTTCTCCAAACAATTGCAACAATCCATGAGCAGTGCTGACTCAACTCAGGCCTAAACTCATGCAGACCACACAAGGCAGATGGGCTATATAAACGTTTTCGCTTTTCCGTTTACGATATATAGTCTACTCTTGTGCAGAATGAATTCTCGTAACTACATAGCACAAGTAGATGTAGTTAACTTTAATCTCACATAGCAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29207-

EPI_ISL_539307
 2020-03-25 2020-09-17
 Netherlands hCoV-19/env/Netherlands/NH-92508-N/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T G4720T C14408T A23403G CAAGGCAGATGGGCTATATAAACGTTTTCGCTTTTCCGTTTACGATATATAGTCTACTCTTGTGCAGAATGAATTCTCGTAACTACATAGCACAAGTAGATGTAGTTAACTTTAATCTCACATAGCAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29550-

EPI_ISL_539315
 2020-03-25 2020-09-17
 Netherlands hCoV-19/env/Netherlands/NB-92499-N/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C19586T A23403G A24862G ATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29850-

EPI_ISL_539316
 2020-03-25 2020-09-17
 Netherlands hCoV-19/env/Netherlands/NH-92506-N/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C18998T A23403G C24159T AAGGCAGATGGGCTATATAAACGTTTTCGCTTTTCCGTTTACGATATATAGTCTACTCTTGTGCAGAATGAATTCTCGTAACTACATAGCACAAGTAGATGTAGTTAACTTTAATCTCACATAGCAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29551-

EPI_ISL_539322
 2020-03-25 2020-09-17
 Netherlands hCoV-19/env/Netherlands/UT-92504-N/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T13210A G13214T C14408T A23403G CAAGGCAGATGGGCTATATAAACGTTTTCGCTTTTCCGTTTACGATATATAGTCTACTCTTGTGCAGAATGAATTCTCGTAACTACATAGCACAAGTAGATGTAGTTAACTTTAATCTCACATAGCAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29550-

EPI_ISL_539324
 2020-03-25 2020-09-17
 Netherlands hCoV-19/env/Netherlands/UT-92505-N/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1191T C14408T C18029T G26144T CAAGGCAGATGGGCTATATAAACGTTTTCGCTTTTCCGTTTACGATATATAGTCTACTCTTGTGCAGAATGAATTCTCGTAACTACATAGCACAAGTAGATGTAGTTAACTTTAATCTCACATAGCAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29550-

EPI_ISL_539850
 2020-03-25 2020-09-21
 China hCoV-19/Hong Kong/VM20005737/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T C14408T A23403G C27046T GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_541777
 2020-03-25 2020-09-23
 United Kingdom hCoV-19/England/LOND-1286E5E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_548348
 2020-03-25 2020-09-26
 United States hCoV-19/USA/CA-CZB-3642/2020
 AT1-Y C241T C1059T C3037T A8116G C11916T C14408T C18998T A23403G G25563T G29540A AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_549011
 2020-03-25 2020-09-28
 Netherlands hCoV-19/env/Netherlands/GE-92502-N/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATC1- ATG1605- G2144A C4391T C8290T C15495A AGCGTTCTTCGGAATGTCGCGCATTGGCATGGAAGTCACACCTTCGGGAACGTGGTTGACCTACACAGGTGCCATCAAATTGGATGACAAAGATCCAAATTTCAAAGATCAAGTCATTTTGCTGAATAAGCATATTGACGCATACAAAACATTCCCACCAACAGAGCCTAAAAAGGACAAAAAGAAGAAGGCTGATGAAACTCAAGCCTTACCGCAGAGACAGAAGAAACAGCAAACTGTGACTCTTCTTCCTGCTGCAGATTTGGATGATTTCTCCAAACAATTGCAACAATCCATGAGCAGTGCTGACTCAACTCAGGCCTAAACTCATGCAGACCACACAAGGCAGATGGGCTATATAAACGTTTTCGCTTTTCCGTTTACGATATATAGTCTACTCTTGTGCAGAATGAATTCTCGTAACTACATAGCACAAGTAGATGTAGTTAACTTTAATCTCACATAGCAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29209-

EPI_ISL_549012
 2020-03-25 2020-09-28
 Netherlands hCoV-19/env/Netherlands/NB-92509-N/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G3521T G5230T G7577T G11161T G13242T C17410T G18838T G19086T A23403G CAAGGCAGATGGGCTATATAAACGTTTTCGCTTTTCCGTTTACGATATATAGTCTACTCTTGTGCAGAATGAATTCTCGTAACTACATAGCACAAGTAGATGTAGTTAACTTTAATCTCACATAGCAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29550-

EPI_ISL_549013
 2020-03-25 2020-09-28
 Netherlands hCoV-19/env/Netherlands/NH-92506-I/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTG1- C241T T21140C G21142T A23403G ACAAGGCAGATGGGCTATATAAACGTTTTCGCTTTTCCGTTTACGATATATAGTCTACTCTTGTGCAGAATGAATTCTCGTAACTACATAGCACAAGTAGATGTAGTTAACTTTAATCTCACATAGCAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29549-

EPI_ISL_560574
 2020-03-25 2020-09-29
 France hCoV-19/France/CVL8278/2020
 ATTAAAGGTTTATACCTTCCC1- C28T C36T C241T C3037T C14408T C21233T A23403G A23691G C24621T GGG28881AAC C29743A AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_560577
 2020-03-25 2020-09-29
 France hCoV-19/France/CVL8287/2020
 ATTAAAGGTTTATACCTTCCC1- A26- C28T C241T C1059T C3037T T13006C C14408T A23403G G25563T C25688T C28606T G29414T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_560581
 2020-03-25 2020-09-29
 France hCoV-19/France/GE8500/2020
 ATTAAA1- C241T C3037T C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_560626
 2020-03-25 2020-09-29
 France hCoV-19/France/GE8786/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G331T C3037T C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_565958
 2020-03-25 2020-09-30
 United States hCoV-19/USA/MI-MDHHS-SC21897/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C14408T A23403G G25563T C29218Y TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

MT457403
 2020-03-25 2020-05-12
 India SARS-CoV-2/human/IND/GMC-RR1191/2020
 ATTAAAGGTTT1- C6312A G11083T C13730T C23929T C28311T C29733Y G29868R C29870A

MT477852
 2020-03-25 2020-05-14
 United States SARS-CoV-2/human/USA/AK115/2020
 ATTAAAGGTTT1- C241T C3037T G8600T C14408T A23403G C25350T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT477885
 2020-03-25 2020-05-18
 India SARS-CoV-2/human/IND/OUMRK1090/2020
 ATTA1- C6312A G11083T C13730T C23929T C28311T C29870A

MT670022
 2020-03-25 2020-06-25
 Chile SARS-CoV-2/human/CHL/2020-31600/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT671810
 2020-03-25 2020-06-26
 United States SARS-CoV-2/human/USA/CA-CZB-1751/2020
 ATTAAAGGTTT1- C8782T C17747T A17858G C18060T A24694T T28144C G28812T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT706148
 2020-03-25 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-27/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11417T T14073C C14408T A23403G A23947G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706149
 2020-03-25 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-28/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C8782T C9113T T18736C C21648T C24034T T26729C C27635T G28077C T28144C A29567C A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706152
 2020-03-25 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-31/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706157
 2020-03-25 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-36/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3871T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706159
 2020-03-25 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-38/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T G16381A T17877C C20316T G25500T G26211T T28144C G28878A G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706162
 2020-03-25 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-41/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G6884T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706169
 2020-03-25 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-48/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G6884T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706170
 2020-03-25 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-49/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3871T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706171
 2020-03-25 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-50/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T G16381A T17877C C20316T G25500T C26124T T28144C G28878A G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706183
 2020-03-25 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-62/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C11224T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706188
 2020-03-25 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-67/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T G16381A T17877C C20316T G25500T T28144C G28878A G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706193
 2020-03-25 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-72/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706202
 2020-03-25 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-81/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3871T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706203
 2020-03-25 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-82/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706204
 2020-03-25 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-83/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T T27447C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706238
 2020-03-25 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-118/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706284
 2020-03-25 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-156/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T334C C3037T C3373A C14408T C19454T T23155C A23403G C24795T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706329
 2020-03-25 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-201/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706330
 2020-03-25 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-202/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706331
 2020-03-25 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-203/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C10519T G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706332
 2020-03-25 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-204/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T15354C A16984G C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706333
 2020-03-25 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-205/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T15354C A16984G C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706334
 2020-03-25 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-206/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C875T A9848G C29013T G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706336
 2020-03-25 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-208/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706337
 2020-03-25 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-209/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C29415T G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706339
 2020-03-25 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-211/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C29347T G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706340
 2020-03-25 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-212/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G25244T G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706341
 2020-03-25 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-213/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G6341A G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706342
 2020-03-25 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-214/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706343
 2020-03-25 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-215/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706344
 2020-03-25 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-216/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A9496G C9520T G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706345
 2020-03-25 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-217/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706346
 2020-03-25 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-218/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C8782T T18736C C24034T T26729C C27635T G28077C T28144C A29567C A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706347
 2020-03-25 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-219/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706348
 2020-03-25 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-220/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A20755C A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706349
 2020-03-25 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-221/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A27474G G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706350
 2020-03-25 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-222/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT764177
 2020-03-25 2020-07-15
 United States SARS-CoV-2/human/USA/COVID20-0048/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAA1- T490A C3177T C8782T T18736C C24034T T26729C G28077C T28144C A29700G TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

MT810521
 2020-03-25 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1651-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T C18877T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810528
 2020-03-25 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1662-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C1887T C3037T C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810545
 2020-03-25 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1682-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T C18877T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810548
 2020-03-25 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1685-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T C18877T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810549
 2020-03-25 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1687-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C1887T C3037T C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810786
 2020-03-25 2020-07-29
 Mexico SARS-CoV-2/human/MEX/SEARCH-1712-TIJ/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A20268G A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810829
 2020-03-25 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1451-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810831
 2020-03-25 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1453-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C379A C1059T C3037T C6027A C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810917
 2020-03-25 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0179-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C1887T C3037T C14408T G22487C A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810923
 2020-03-25 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0187-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T C18814T TTTGGGTGTTTA21982- A23403G CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810964
 2020-03-25 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0259-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C1917T C3037T C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811019
 2020-03-25 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0413-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811173
 2020-03-25 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0115-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

NMDC60013227
 2020-03-25 2020-06-01
 China hCoV-19/Guangzhou/ID036/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C313T C3037T G6530C C14408T G14829T A23403G G25563T T28066C C29708T G29868A

NMDC60013248
 2020-03-25 2020-06-01
 China hCoV-19/Guangzhou/ID076/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C2416T T12436A G22468T G25563T C25904T T28144C G29742A TG29867YC

EPI_ISL_420162
 2020-03-26 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C0831/2020
 C241T C3037T T9429C C14408T C18713T A23403G GGG28881AAC

EPI_ISL_420223
 2020-03-26 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C0716/2020
 C241T C3037T C14408T C15752T C17430T C18877T A23403G G24197T G25563T C26735T

EPI_ISL_420224
 2020-03-26 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C0594/2020
 C241T C3037T C14408T C18713T A23403G GGG28881AAC

EPI_ISL_420229
 2020-03-26 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C01CD/2020
 C241T C313T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_420241
 2020-03-26 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C0637/2020
 C241T C2937T C3037T C10605T T11314C C14408T A20268G A23403G

EPI_ISL_420242
 2020-03-26 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C0734/2020
 C241T C3037T C14408T A23403G C25350T

EPI_ISL_420244
 2020-03-26 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C05B2/2020
 C241T C3037T T7438C G10097A C14408T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_420249
 2020-03-26 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C0549/2020
 A2480G C2558T C8078T C8917T G11083T C14805T G26144T G28378T

EPI_ISL_420716
 2020-03-26 2020-04-06
 United Kingdom hCoV-19/England/20139056904/2020
 C241T C3037T C14408T C18788T T19839C A23403G GGG28881AAC

EPI_ISL_420847
 2020-03-26 2020-04-07
 Democratic Republic of the Congo hCoV-19/DRC/431/2020
 AT1- C241T C3037T C14408T G14773A C15324T A23403G C25433T ATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29792-

EPI_ISL_421288
 2020-03-26 2020-04-07
 United States hCoV-19/USA/WI-UW-30/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G20752T A23403G G25563T C28677T T28930C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421292
 2020-03-26 2020-04-07
 United States hCoV-19/USA/WI-UW-34/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T G16381A C16428T T17877C C20316T G25500T C26124T T28144C G28878A G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421333
 2020-03-26 2020-04-07
 United States hCoV-19/USA/WI-UW-75/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C11224T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421636
 2020-03-26 2020-04-09
 Australia hCoV-19/Australia/NSWID930/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C1059T C3037T C10851T C14408T C14724T C15763T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_421787
 2020-03-26 2020-04-09
 United Kingdom hCoV-19/England/201361012/2020
 ATG1605- T3931C G11083T C26833T

EPI_ISL_421794
 2020-03-26 2020-04-09
 United Kingdom hCoV-19/England/201380024/2020
 A2480G C2558T A10323G G11083T C14805T C18652T G21941K G26144T

EPI_ISL_421797
 2020-03-26 2020-04-09
 United Kingdom hCoV-19/England/201380030/2020
 C241T C3037T C14408T G21204T A23403G GGG28881AAC

EPI_ISL_421801
 2020-03-26 2020-04-09
 United Kingdom hCoV-19/England/201380037/2020
 C241T C3037T GT5743SY C14408T G21204T A23403G GGG28881AAC

EPI_ISL_421803
 2020-03-26 2020-04-09
 United Kingdom hCoV-19/England/201380041/2020
 C241T C3037T C14408T A23403G C28377T GGG28881AAC

EPI_ISL_421805
 2020-03-26 2020-04-09
 United Kingdom hCoV-19/England/201380044/2020
 C583T A700G A2480G C2558T C7279T G11083T C14805T A15405G G26144T C27331T

EPI_ISL_421847
 2020-03-26 2020-04-09
 United Kingdom hCoV-19/England/20138088204/2020
 C241T C3037T T6469C A9436T C14408T T20103W A23403G G25429T

EPI_ISL_421862
 2020-03-26 2020-04-09
 United Kingdom hCoV-19/England/20139008204/2020
 C241T C2416T C3037T C14408T C14786T G20578T A23403G G25563T

EPI_ISL_421875
 2020-03-26 2020-04-09
 United Kingdom hCoV-19/England/20139011304/2020
 A2480G C2558T C4084T G11083T C14805T G25494T G26144T A26319T

EPI_ISL_421880
 2020-03-26 2020-04-09
 United Kingdom hCoV-19/England/20139021104/2020
 G6101A C9969Y G11083T C14805T C16949Y T22032Y C23707T G26144T C26753Y

EPI_ISL_421900
 2020-03-26 2020-04-09
 United Kingdom hCoV-19/England/20139027004/2020
 C241T C3037T C14408T A23403G G27281T GGG28881AAC

EPI_ISL_421904
 2020-03-26 2020-04-09
 United Kingdom hCoV-19/England/20139027404/2020
 C241T C3037T C14408T T22499Y A23403G GGG28881AAC

EPI_ISL_421907
 2020-03-26 2020-04-09
 United Kingdom hCoV-19/England/20139027904/2020
 C241T C3037T C14408T A20268G C23121Y A23403G

EPI_ISL_421909
 2020-03-26 2020-04-09
 United Kingdom hCoV-19/England/20139029104/2020
 C583T A700G A2480G C2558T C7279T G11083T C14805T A15405G A21137R G26144T C27331T

EPI_ISL_421910
 2020-03-26 2020-04-09
 United Kingdom hCoV-19/England/20139029304/2020
 C241T G11083T C14805T T17247C T22384C G26144T T29726-

EPI_ISL_421911
 2020-03-26 2020-04-09
 United Kingdom hCoV-19/England/20139029404/2020
 C241T G11083T C14805T T17247C G26144T T29726-

EPI_ISL_422038
 2020-03-26 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-2621D/2020
 C241T C3037T C14408T A23403G

EPI_ISL_422104
 2020-03-26 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-26022/2020
 A1- G1440A G2891A C25669T G28851T

EPI_ISL_422111
 2020-03-26 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-260C8/2020
 ATTA1- C241T C3037T G11083T C12242T C14408T C16887T C22264T A23403G A25575C

EPI_ISL_422751 LR877903
 2020-03-26 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_216/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C17626T A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422753 LR877930
 2020-03-26 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_218/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G C28854T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422755 LR877914
 2020-03-26 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_220/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422759 LR877912
 2020-03-26 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_224/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T10561C C14408T C15324T A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422770 LR877959
 2020-03-26 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_236/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G12550A C14408T A20268G C20740A A23403G G26501T G29734C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422942 LR877904
 2020-03-26 2020-04-11
 Netherlands hCoV-19/Netherlands/ZuidHolland_74/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A24862G C28432T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422943 LR877892
 2020-03-26 2020-04-11
 Netherlands hCoV-19/Netherlands/ZuidHolland_75/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G12550A C14408T A20268G C20740A A23403G G26501T G29734C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422944 LR877925
 2020-03-26 2020-04-11
 Netherlands hCoV-19/Netherlands/ZuidHolland_76/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T17126C A20268G A23403G G25116A GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422947 LR877918
 2020-03-26 2020-04-11
 Netherlands hCoV-19/Netherlands/ZuidHolland_79/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C18894T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_423232
 2020-03-26 2020-04-12
 United Kingdom hCoV-19/England/201360181/2020
 A12G C241T C3037T C14408T A23403G G25429T

EPI_ISL_423263
 2020-03-26 2020-04-12
 United Kingdom hCoV-19/England/201360281/2020
 C241T C3037T C14408T C16111T A19939C A23403G GGG28881AAC

EPI_ISL_423324
 2020-03-26 2020-04-12
 United Kingdom hCoV-19/England/20138078204/2020
 A2480G C2558T C7011T G11083T G11405A C14805T C19895T G20006A G20011K G26144T C28869T G29779T

EPI_ISL_424562
 2020-03-26 2020-04-13
 Iceland hCoV-19/Iceland/542/2020
 C241T C3037T C3373A C11195T C14408T A23403G GGG28881AAC

EPI_ISL_424572
 2020-03-26 2020-04-13
 Iceland hCoV-19/Iceland/552/2020
 C241T C3037T C13862T C14408T A23403G C28836T

EPI_ISL_424610
 2020-03-26 2020-04-13
 Iceland hCoV-19/Iceland/590/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_425057
 2020-03-26 2020-04-14
 Belgium hCoV-19/Belgium/UGent-17/2020
 T514C ATG1605- C17410T T18723C

EPI_ISL_425314
 2020-03-26 2020-04-14
 United Kingdom hCoV-19/England/CAMB-745EA/2020
 A187G C241T C3037T C14408T A23403G

EPI_ISL_425563
 2020-03-26 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10E58A/2020
 ATG1605- C4999T

EPI_ISL_425565
 2020-03-26 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10E5A8/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_425943
 2020-03-26 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB212/2020
 C241T C3037T C12854T C14408T A23403G C25433T

EPI_ISL_425944
 2020-03-26 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB214/2020
 C241T C3037T C14408T A23403G C25433T

EPI_ISL_425945
 2020-03-26 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB216/2020
 C241T C3037T C14408T A23403G C25433T

EPI_ISL_425947
 2020-03-26 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB219/2020
 C241T C3037T C14408T A23403G C25433T G29405A

EPI_ISL_425948
 2020-03-26 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB222/2020
 C8782T C17470T C26088T T28144C

EPI_ISL_425949
 2020-03-26 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB226/2020
 C988T G11083T C14805T T17247C G26144T C26735T C29585T

EPI_ISL_425950
 2020-03-26 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB227/2020
 C1545T A2480G C2558T G11083T G11557T C14805T G26144T C29218T

EPI_ISL_425953
 2020-03-26 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB245/2020
 C241T C3037T C14408T C16289T G16741T C17375T C18508T A23403G G25429T

EPI_ISL_425956
 2020-03-26 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB254/2020
 C241T C3037T C14408T C16289T A23403G G25429T

EPI_ISL_425959
 2020-03-26 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB273/2020
 C241T C3037T C14408T A20268G A23403G G29734C

EPI_ISL_425961
 2020-03-26 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB275/2020
 C241T C3037T C7420T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_426126 MT345834
 2020-03-26 2020-04-14
 United States SARS-CoV-2/human/USA/WA-UW-2240/2020
 ATTAAAGG1- T10G A12T AAC34TTT C241T C1059T C3037T C14408T A23403G G25563T A29903GTATGTC

EPI_ISL_426307
 2020-03-26 2020-04-15
 United States hCoV-19/USA/NY-Wadsworth-30164-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- T514C ATG1605- C17410T A20379G C29732T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426308
 2020-03-26 2020-04-15
 United States hCoV-19/USA/NY-Wadsworth-30246-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426533
 2020-03-26 2020-04-17
 United States hCoV-19/USA/AZ-TG270200/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426546
 2020-03-26 2020-04-17
 United States hCoV-19/USA/AZ-TG271886/2020
 C241T C3037T G7312C C9534A C14408T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426547
 2020-03-26 2020-04-17
 United States hCoV-19/USA/AZ-TG271888/2020
 C241T C3037T C9534A C14408T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426548
 2020-03-26 2020-04-17
 United States hCoV-19/USA/AZ-TG271890/2020
 C241T C3037T G7312C C9534A C14408T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426549
 2020-03-26 2020-04-17
 United States hCoV-19/USA/AZ-TG271892/2020
 C241T C1059T C3037T A8223C C14408T A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426550
 2020-03-26 2020-04-17
 United States hCoV-19/USA/AZ-TG271894/2020
 C241T C3037T C9534A C14408T C18877T A23403G G25563T G29742A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426554
 2020-03-26 2020-04-17
 United States hCoV-19/USA/AZ-TG271902/2020
 C241T C1059T T2851C C3037T C5183T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426555
 2020-03-26 2020-04-17
 United States hCoV-19/USA/AZ-TG271922/2020
 C241T C3037T C9534A C14408T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426752 MT451324
 2020-03-26 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC458/2020
 C241T C3037T C14408T C18877T A23403G G25563T

EPI_ISL_426872 MT451425
 2020-03-26 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC617/2020
 C241T C1059T C3037T C14408T A23403G G25563T G25593C

EPI_ISL_426874 MT451436
 2020-03-26 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC630/2020
 C1076T G1397A G3564T G11083T G24933T C27964T T28688C G29742T

EPI_ISL_426890 MT517427
 2020-03-26 2020-04-17
 Czech Republic SARS-CoV-2/human/CZE/IAB_15/2020
 ATTAAAGG1- C241T C541T C1059T C3037T G3759T G11083T C14408T A23403G G25563T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_426891 MT517428
 2020-03-26 2020-04-17
 Czech Republic SARS-CoV-2/human/CZE/IAB_16/2020
 ATTAAAGGTTTATACC1- C241T C3037T G3955T C14408T A23403G G25534T C27005T C27046T GGG28881AAC ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_427167 MT358709
 2020-03-26 2020-04-17
 United States SARS-CoV-2/human/USA/ID-UW-3892/2020
 ATTAAAGGTTTAT1- A14T CCCAGGTAACAAACCAA19- C36T A4236G G11083T C14805T T25655C G26144T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_427175 MT358675
 2020-03-26 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-3810/2020
 AT1- C8782T C17747T A17858G C18060T T28144C AAAA29900-

EPI_ISL_427177 MT358677
 2020-03-26 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-3814/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- C36T C1929T C5784T C8782T C17747T A17858G C18060T C23525T G26730A T28144C AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_427180 MT358680
 2020-03-26 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-3819/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C1059T C3037T C14408T A23403G G25563T G29553A AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_427181 MT358681
 2020-03-26 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-3826/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C36T C241T C1059T C2397T C3037T C14408T A23403G G25563T C27630T G29553A AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_427182 MT358682
 2020-03-26 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-3827/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A31T C36T C8782T C17747T A17858G C18060T G21255C C21575T T28144C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_427187 MT358687
 2020-03-26 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-3834/2020
 ATTAAA1- A31T C36T C3992T C8782T C17747T A17858G C18060T G22984A A23992T T27384C T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_427188 MT358688
 2020-03-26 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-3838/2020
 ATTAAAGGTTTAT1- C241T C1059T C3037T A11830G C14408T A23403G G25563T G29553A AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_427189 MT358689
 2020-03-26 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-3839/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C36T C241T C1059T C3037T C14408T A23147G A23403G G25563T G29553A AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_427190 MT358690
 2020-03-26 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-3841/2020
 ATTAAAGGTT1- C36T T490A A1399G C3177T C6040T C8782T G12478A T18736C C24034T C25803T T26729C G28077C T28144C C28896G G28985T A29012G A29700G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_427193 MT358694
 2020-03-26 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-3850/2020
 ATTAAAGGTTTATACCTTCC1- C8782T C17747T A17858G C18060T T28144C C29870M

EPI_ISL_427194 MT358695
 2020-03-26 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-3855/2020
 ATTAAA1- A31W C36T C241T C1059T C3037T C6312T C14408T A23403G G25563T G29553A AAAAA29899-

EPI_ISL_427195 MT358696
 2020-03-26 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-3858/2020
 ATTAAA1- C36T C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_427196 MT358697
 2020-03-26 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-3862/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T C3037T C14408T A23403G G25563T G29553A AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_427198 MT358699
 2020-03-26 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-3871/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- C36T C241T C1059T C3037T C6040T C14408T A23403G G25563T T26756A AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_427199 MT358700
 2020-03-26 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-3880/2020
 ATTAAAGGTTTAT1- C36T C241T C1059T C3037T C14408T A23403G G25563T G29553A AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_427304
 2020-03-26 2020-04-18
 Brazil hCoV-19/Brazil/RJ-872/2020
 ATTAAAGGTTTATACC1- C241T C3037T C14408T A23403G C23613T C25672A T27299C GGG28881AAC T29148C G29786C TATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29791-

EPI_ISL_428319
 2020-03-26 2020-04-20
 United States hCoV-19/USA/WI-UW-223/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428320
 2020-03-26 2020-04-20
 United States hCoV-19/USA/WI-UW-224/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C3736T C8655T G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428321
 2020-03-26 2020-04-20
 United States hCoV-19/USA/WI-UW-225/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428322
 2020-03-26 2020-04-20
 United States hCoV-19/USA/WI-UW-226/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T15354C C18877T C20628T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428323
 2020-03-26 2020-04-20
 United States hCoV-19/USA/WI-UW-227/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T2116A G11083T G14772T G23518A G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428324
 2020-03-26 2020-04-20
 United States hCoV-19/USA/WI-UW-228/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C7318A A14549G G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428325
 2020-03-26 2020-04-20
 United States hCoV-19/USA/WI-UW-229/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C19017T G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428326
 2020-03-26 2020-04-20
 United States hCoV-19/USA/WI-UW-230/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T15354C C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428327
 2020-03-26 2020-04-20
 United States hCoV-19/USA/WI-UW-231/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C15738T G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428330
 2020-03-26 2020-04-20
 United States hCoV-19/USA/WI-UW-234/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A16053G G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428365
 2020-03-26 2020-04-20
 France hCoV-19/France/IDF3930/2020
 C28T C241T C1059T C3037T C9214T C10889T C14408T A23403G G25563T C25821T AAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29813-

EPI_ISL_428689
 2020-03-26 2020-04-21
 Spain hCoV-19/Spain/Madrid_H12_26/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C3037T C14408T A20268G A23403G CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_428727
 2020-03-26 2020-04-21
 United States hCoV-19/USA/WI-UW-253/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428909
 2020-03-26 2020-04-22
 Russia hCoV-19/Russia/Chechenya-83801/2020
 C241T C3037T C14408T C18877T C22713T A23403G G25563T C26735T

EPI_ISL_428916
 2020-03-26 2020-04-22
 Russia hCoV-19/Russia/Chechenya-83803/2020
 C241T C2113T C3037T C7765T C14323T C14408T C17690T C18877T A23403G G25563T

EPI_ISL_429133
 2020-03-26 2020-04-23
 Sweden hCoV-19/Sweden/20-08690/2020
 C241T C3037T C14408T A21137G A23403G

EPI_ISL_429556
 2020-03-26 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI477/2020
 C218T C241T C1059T C1302T C3037T C14408T A23403G G25563T

EPI_ISL_429557
 2020-03-26 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI478/2020
 C241T C1059T C1302T C3037T C14408T A23403G G25563T

EPI_ISL_429562
 2020-03-26 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI483/2020
 C241T C1059T C1302T C3037T C14408T A23403G G25563T

EPI_ISL_429564
 2020-03-26 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI486/2020
 C241T C244T C3037T C14408T A23403G C27046T GGG28881AAC G29440T

EPI_ISL_429571
 2020-03-26 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI497/2020
 C241T C3037T A12605G C14408T C15324T A23403G

EPI_ISL_429574
 2020-03-26 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI506/2020
 C241T C1059T C1302T C3037T C14408T A23403G G25563T

EPI_ISL_429579
 2020-03-26 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI511/2020
 C241T C3037T C3264T C14408T A23403G

EPI_ISL_429584
 2020-03-26 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI518/2020
 A1230G G1440A G2891A C4668T G11083T T28088C

EPI_ISL_429585
 2020-03-26 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI520/2020
 C241T C1059T C3037T G5518T C10615T C14408T A23403G G25563T C29546T

EPI_ISL_429586
 2020-03-26 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI521/2020
 C241T C3037T C7834T C14408T C16289T A23403G

EPI_ISL_429587
 2020-03-26 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI522/2020
 C241T C1420T C3037T C7834T C14408T C16887T A23403G

EPI_ISL_429588
 2020-03-26 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI523/2020
 C241T C1059T C3037T A6366G C12049T C14408T A23403G G25563T

EPI_ISL_429612 MT375441
 2020-03-26 2020-04-23
 United States SARS-CoV-2/human/USA/WA-UW-4609/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C36T C6310T C8782T C17747T A17858G C18060T T19015A G23755T G25677T A25847G C26750T G27327T T28144C AA29902-

EPI_ISL_429614 MT375443
 2020-03-26 2020-04-23
 United States SARS-CoV-2/human/USA/WA-UW-4612/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T C3037T A12148T C14408T A23403G G25563T G29553A AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_429746
 2020-03-26 2020-04-24
 Luxembourg hCoV-19/Luxembourg/LNS2913521/2020
 C241T C3037T C14408T C15324T G22468T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_429969 MT415894
 2020-03-26 2020-04-24
 United States SARS-CoV-2/human/USA/VA-DCLS-0069/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C2416T C3037T T5338C C10712T C14408T A23403G G25563T C29870A

EPI_ISL_429979 MT415903
 2020-03-26 2020-04-24
 United States SARS-CoV-2/human/USA/VA-DCLS-0080/2020
 C241T C2416T C3037T G4523A C10712T C14408T A23403G G25563T C29870M

EPI_ISL_430005
 2020-03-26 2020-04-24
 Jordan hCoV-19/Jordan/SR-047/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C6027T C14408T A23403G TTTAGCACTCAA27568- A27631T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_430466
 2020-03-26 2020-04-27
 India hCoV-19/India/S6/2020
 ATTAAAGGTTTAT1- C241T C3037T C14408T A23403G C23730T G25429T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_430639 MT451641
 2020-03-26 2020-04-27
 Australia SARS-CoV-2/human/AUS/VIC942/2020
 C241T C1059T C2106T C3037T C14408T C15154T A20755C A23403G G25563T

EPI_ISL_431018
 2020-03-26 2020-04-29
 United States hCoV-19/USA/AK-PHL052/2020
 ATTAAAGGTTTAT1- C241T C3037T C6504T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_433323
 2020-03-26 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR672/2020
 C7869T G11083T C14805T T17247C G26144T

EPI_ISL_433330
 2020-03-26 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR712/2020
 ATG1605- A10770G C12710T C25466T C28854T

EPI_ISL_433333
 2020-03-26 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR749/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_433334
 2020-03-26 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR752/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16289T A23403G G25429T C29769T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_433335
 2020-03-26 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR754/2020
 C241T C3037T C14408T A20268G A23403G G29734C

EPI_ISL_433339
 2020-03-26 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR785/2020
 ATG1605- A10770G C12710T C28854T

EPI_ISL_433341
 2020-03-26 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR796/2020
 ATG1605- A10770G C12710T C25466T C28854T

EPI_ISL_433353
 2020-03-26 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR855/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C16329T A18639G A23403G C23536T G25563T C25731T C29625T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_433535
 2020-03-26 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR1308/2020
 C241T C3037T C14408T A23403G

EPI_ISL_433739
 2020-03-26 2020-04-29
 United Kingdom hCoV-19/England/CAMB-784AD/2020
 G1440A G2891A A27669G

EPI_ISL_433743
 2020-03-26 2020-04-29
 United Kingdom hCoV-19/England/CAMB-784E9/2020
 A2480G C2558T G11083T C14805T C21622T G26144T G29736C

EPI_ISL_433813
 2020-03-26 2020-04-29
 United Kingdom hCoV-19/England/CAMB-79A04/2020
 G1440A G2891A C4668T C28708T

EPI_ISL_433814
 2020-03-26 2020-04-29
 United Kingdom hCoV-19/England/CAMB-79A22/2020
 C241T A2869G C3037T C14408T A23403G GGG28881AAC C29095T T29817C

EPI_ISL_433815
 2020-03-26 2020-04-29
 United Kingdom hCoV-19/England/CAMB-79A40/2020
 C241T G2164A C3037T C10525T C14408T A23403G GGG28881AAC

EPI_ISL_433817
 2020-03-26 2020-04-29
 United Kingdom hCoV-19/England/CAMB-79A8C/2020
 C5833T G11083T C11833T C14805T T17247C G23856A C25791T G26144T

EPI_ISL_433820
 2020-03-26 2020-04-29
 United Kingdom hCoV-19/England/CAMB-79AC8/2020
 G1440A G2891A C27011T A27669G

EPI_ISL_433824
 2020-03-26 2020-04-29
 United Kingdom hCoV-19/England/CAMB-79B01/2020
 A2480G C2558T C3429T G11083T C14805T A21137G G26144T C26456T

EPI_ISL_434121 MT632813
 2020-03-26 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S361/2020
 C241T C379A C1059T T2244C C3037T C14408T A23403G G25563T

EPI_ISL_434122 MT632781
 2020-03-26 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S362/2020
 C241T C379A C1059T T2244C C3037T C3177T G14316T C14408T A23403G G25563T

EPI_ISL_434123 MT632802
 2020-03-26 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S363/2020
 C241T C379A C1059T T2244C C14408T A23403G G25563T

EPI_ISL_434124 MT632800
 2020-03-26 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S364/2020
 C241T C379A C1059T T2244C C3037T C14408T A23403G G25563T G29291A

EPI_ISL_434128 MT632926
 2020-03-26 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S368/2020
 C8782T C17747T A17858G C18060T G28001T T28144C

EPI_ISL_434129 MT633002
 2020-03-26 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S369/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434132 MT632918
 2020-03-26 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S372/2020
 C8782T C17747T A17858G C18060T C21575T T28144C

EPI_ISL_434134 MT632944
 2020-03-26 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S374/2020
 C8782T C17747T A17858G C18060T C21575T T28144C

EPI_ISL_434137 MT633007
 2020-03-26 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S377/2020
 C8782T C9534T C17747T A17858G C18060T T28144C

EPI_ISL_434146 MT632901
 2020-03-26 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S386/2020
 G3371A C8782T C17747T A17858G C18060T T19783C T28144C

EPI_ISL_434151 MT633045
 2020-03-26 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S391/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434163 MT633005
 2020-03-26 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S403/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434164 MT632903
 2020-03-26 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S404/2020
 C241T C3037T C14408T C16376T C18877T A23403G G25563T

EPI_ISL_434166 MT632867
 2020-03-26 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S406/2020
 C241T C1059T C3037T G7560A C14408T G19999T G21452T A23403G G25563T

EPI_ISL_434173 MT633044
 2020-03-26 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S413/2020
 G11083T C14805T G26144T

EPI_ISL_434202 MT632991
 2020-03-26 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S442/2020
 C8782T C17747T A17858G C18060T C25886T T28144C

EPI_ISL_434252 MT632965
 2020-03-26 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S492/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434283 MT632806
 2020-03-26 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S523/2020
 C241T C1059T C3037T A9204G C14408T G18780T A23403G G25563T G29553A

EPI_ISL_434332 MT632956
 2020-03-26 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S572/2020
 C8782T C17747T A17858G C18060T T28144C T29667C

EPI_ISL_434345 MT633046
 2020-03-26 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S585/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434347
 2020-03-26 2020-04-29
 Belgium hCoV-19/Belgium/UGent-28/2020
 C241T C313T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_434348
 2020-03-26 2020-04-29
 Belgium hCoV-19/Belgium/UGent-30/2020
 C241T C3037T C14408T T19839C A23403G C24099T GGG28881AAC

EPI_ISL_434349
 2020-03-26 2020-04-29
 Belgium hCoV-19/Belgium/UGent-31/2020
 T514C ATG1605- C17410T

EPI_ISL_434352
 2020-03-26 2020-04-29
 Belgium hCoV-19/Belgium/UGent-34/2020
 C241T C3037T G4255T C14408T A23403G A26530G

EPI_ISL_434372
 2020-03-26 2020-04-29
 Belgium hCoV-19/Belgium/ITM_C053/2020
 C241T C3037T A6507G C14408T A23403G

EPI_ISL_434468
 2020-03-26 2020-04-29
 Greece hCoV-19/Greece/51/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C313T C3037T C14408T A23403G C24863T G25135T C27673T G28086T GGG28881AAC TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_434527 MT811649
 2020-03-26 2020-04-29
 United States SARS-CoV-2/human/USA/SEARCH-0071-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T A23403G G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_434555
 2020-03-26 2020-04-30
 Philippines hCoV-19/Philippines/PGC03/2020
 A1- C4780T C6312A C7488T G11083T C13730T C23929T T26048G G26849T C28311T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_434607 MT429183
 2020-03-26 2020-04-30
 United States SARS-CoV-2/human/USA/WI-UW-261/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T6814C G11083T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_434626
 2020-03-26 2020-04-30
 France hCoV-19/France/OCC-11/2020
 C241T C1427T C3037T G5305A G7472A G9422T C14408T A20262G A23403G GGG28881AAC

EPI_ISL_434627
 2020-03-26 2020-04-30
 France hCoV-19/France/OCC-12/2020
 C241T C1427T C3037T G5305A G9422T C14408T A20262G A23403G GGG28881AAC

EPI_ISL_434892
 2020-03-26 2020-05-01
 United States hCoV-19/USA/TX-HMH263/2020
 T490A G1583A C3177T C6040T C8782T C8950T G12478A T18736C C24034T T26729C G28077C T28144C C28896G C29451T A29700G

EPI_ISL_434893
 2020-03-26 2020-05-01
 United States hCoV-19/USA/TX-HMH264/2020
 C241T C3037T C14408T A23403G C23707T C26110T C29441G

EPI_ISL_434894
 2020-03-26 2020-05-01
 United States hCoV-19/USA/TX-HMH265/2020
 C241T C3037T C14408T G15243T A23403G

EPI_ISL_434895
 2020-03-26 2020-05-01
 United States hCoV-19/USA/TX-HMH266/2020
 C241T C1059T C3037T C14220T C14408T A23403G G25563T

EPI_ISL_434896
 2020-03-26 2020-05-01
 United States hCoV-19/USA/TX-HMH267/2020
 T490A G1679A C3177T C7124T C8782T C9561T T18736C C24034T G25186T C25433T T26729C C26895T G28077C T28144C A29700G

EPI_ISL_434897
 2020-03-26 2020-05-01
 United States hCoV-19/USA/TX-HMH268/2020
 T490A C3177T C7124T C8782T C9561T T18736C T21973C C24034T C25433T T26729C C26895T G28077C T28144C A29700G

EPI_ISL_434898
 2020-03-26 2020-05-01
 United States hCoV-19/USA/TX-HMH269/2020
 C241T C1059T C3037T C14408T A18082G A23403G G25563T C27964T

EPI_ISL_434899
 2020-03-26 2020-05-01
 United States hCoV-19/USA/TX-HMH271/2020
 C241T C1059T C3037T C14408T T18513C A23403G G25563T C27964T

EPI_ISL_434900
 2020-03-26 2020-05-01
 United States hCoV-19/USA/TX-HMH272/2020
 C241T C1059T C3037T C7279T C10188T C14408T A23403G T24982C G25563T C27964T C28887T

EPI_ISL_434901
 2020-03-26 2020-05-01
 United States hCoV-19/USA/TX-HMH273/2020
 C241T C3037T C6145T C14408T C14786T C15105A C21575T A23403G G24077T C25916T C29466T

EPI_ISL_435410
 2020-03-26 2020-05-04
 Hungary hCoV-19/Hungary/SRC-00419/2020
 C241T C1059T C3037T C11572T C14408T A23403G G25563T C28432T

EPI_ISL_436104
 2020-03-26 2020-05-06
 Taiwan hCoV-19/Taiwan/TSGH-19/2020
 C241T C3037T A5855G C14408T T19839C A23403G GGG28881AAC G29751A -29904CAAAAAAAAAA

EPI_ISL_436284
 2020-03-26 2020-05-06
 Spain hCoV-19/Spain/Valencia189/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C398T C8782T C26088T A26612G T28144C CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_436305
 2020-03-26 2020-05-06
 Spain hCoV-19/Spain/Valencia210/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C14408T C18348T A20268G A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_436317
 2020-03-26 2020-05-06
 Spain hCoV-19/Spain/Valencia222/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C14408T A20268G A23403G G29734C AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_436318
 2020-03-26 2020-05-06
 Spain hCoV-19/Spain/Valencia223/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C14408T G15438T A20268G A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_436327
 2020-03-26 2020-05-06
 Spain hCoV-19/Spain/Valencia232/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C313T C3037T C14408T A23403G G28541T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_436330
 2020-03-26 2020-05-06
 Spain hCoV-19/Spain/Valencia235/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C14408T C17639T A20268G A23403G C28638T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_436337
 2020-03-26 2020-05-06
 Spain hCoV-19/Spain/Valencia242/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C313T C3037T C14408T A23403G C26907A GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_436355
 2020-03-26 2020-05-06
 Spain hCoV-19/Spain/Valencia260/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C8782T T11522G C19983T C26088T T28144C G28812K G29291T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_436356
 2020-03-26 2020-05-06
 Spain hCoV-19/Spain/Valencia261/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C14408T A20268G A23403G G29734C AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_436369
 2020-03-26 2020-05-06
 Spain hCoV-19/Spain/Valencia274/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C3037T C14408T A20268G A23403G ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_436411
 2020-03-26 2020-05-06
 Spain hCoV-19/Spain/Valencia316/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C3037T T8603C G14209T C14408T A23403G TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_436468
 2020-03-26 2020-05-06
 United States hCoV-19/USA/PA-MGSC13-04/2020
 C241T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_436471
 2020-03-26 2020-05-06
 United States hCoV-19/USA/PA-MGSC16-04/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_436481
 2020-03-26 2020-05-06
 United States hCoV-19/USA/PA-MGSC30-05/2020
 C241T C1059T C3037T C12809T C14408T A23403G G25563T C26625T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_436486
 2020-03-26 2020-05-06
 United States hCoV-19/USA/PA-MGSC38-05/2020
 C241T C3037T C14408T C18877T A23403G G25563T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_436488
 2020-03-26 2020-05-06
 United States hCoV-19/USA/PA-MGSC40-05/2020
 C241T C1059T C3037T C14408T A23403G G25563T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_436489
 2020-03-26 2020-05-06
 United States hCoV-19/USA/PA-MGSC41-05/2020
 C241T C1059T C3037T C14408T A23403G G25563T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_436490
 2020-03-26 2020-05-06
 United States hCoV-19/USA/PA-MGSC42-05/2020
 C241T C1059T C3037T C14408T A23403G G25563T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_436492
 2020-03-26 2020-05-06
 United States hCoV-19/USA/PA-MGSC44-05/2020
 C241T C1059T C3037T C11767T C14408T A23403G G25563T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_436494
 2020-03-26 2020-05-06
 United States hCoV-19/USA/PA-MGSC46-05/2020
 C241T C1059T C3037T C11767T C11788T C14408T A23403G G25563T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_436496
 2020-03-26 2020-05-06
 United States hCoV-19/USA/PA-MGSC48-05/2020
 C241T C3037T C14408T A23403G G25644T GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_436497
 2020-03-26 2020-05-06
 United States hCoV-19/USA/PA-MGSC49-05/2020
 C241T C1059T C3037T A6442T C14408T A23403G G25563T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_436498
 2020-03-26 2020-05-06
 United States hCoV-19/USA/PA-MGSC50-05/2020
 C241T C1059T C3037T C11767T C14408T A23403G G25563T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_436499
 2020-03-26 2020-05-06
 United States hCoV-19/USA/PA-MGSC51-05/2020
 C241T C3037T C14408T C18877T A23403G G25563T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_436631 MT706443
 2020-03-26 2020-05-06
 United States SARS-CoV-2/human/USA/WI-UW-337/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C13430A C14408T A20755C A23403G G25563T T29206C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_436632 MT706444
 2020-03-26 2020-05-06
 United States SARS-CoV-2/human/USA/WI-UW-338/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T11918G C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_436867 MT439300
 2020-03-26 2020-05-06
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20135/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C2668Y C3037T C14408T A23403G G25563T C26750Y AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_436868 MT439303
 2020-03-26 2020-05-06
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20157/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_436887 MT439295
 2020-03-26 2020-05-06
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20164/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C1059T C3037T C14408T A16668R A23403G G25563T C28826Y TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_436967
 2020-03-26 2020-05-08
 Denmark hCoV-19/Denmark/ALAB-SSI-547/2020
 C241T C1059T C1302T C3037T C14408T A23403G G25563T

EPI_ISL_436990
 2020-03-26 2020-05-08
 Denmark hCoV-19/Denmark/ALAB-SSI-607/2020
 C241T C3037T C14408T C18744T A20268G A23403G G25088T

EPI_ISL_436991
 2020-03-26 2020-05-08
 Denmark hCoV-19/Denmark/ALAB-SSI-608/2020
 C241T C1059T C2245T C3037T C14408T G19086T A23403G G25563T

EPI_ISL_436993
 2020-03-26 2020-05-08
 Denmark hCoV-19/Denmark/ALAB-SSI-611/2020
 C241T C1059T C1302T C3037T C14408T A23403G G25563T

EPI_ISL_437011
 2020-03-26 2020-05-08
 Denmark hCoV-19/Denmark/ALAB-SSI-635/2020
 C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_437013
 2020-03-26 2020-05-08
 Denmark hCoV-19/Denmark/ALAB-SSI-639/2020
 C241T C1059T C3037T C3743T C14408T A23403G G25563T

EPI_ISL_437014
 2020-03-26 2020-05-08
 Denmark hCoV-19/Denmark/ALAB-SSI-640/2020
 C241T C1059T C3037T C11572T C14408T A23403G G24368T G25563T G29690T

EPI_ISL_437016
 2020-03-26 2020-05-08
 Denmark hCoV-19/Denmark/ALAB-SSI-644/2020
 C241T C1059T C1302T C3037T C14408T A23403G G25563T G28077T

EPI_ISL_437030
 2020-03-26 2020-05-08
 Denmark hCoV-19/Denmark/ALAB-SSI-670/2020
 C241T C1059T C3037T T8788C C14408T A23403G G25563T G26951A

EPI_ISL_437033
 2020-03-26 2020-05-08
 Denmark hCoV-19/Denmark/ALAB-SSI-673/2020
 C241T C3037T C7834T C14408T A23403G

EPI_ISL_437189
 2020-03-26 2020-05-08
 Indonesia hCoV-19/Indonesia/JKT-EIJK01/2020
 C14636T T21976C G23426T

EPI_ISL_437190
 2020-03-26 2020-05-08
 Indonesia hCoV-19/Indonesia/JKT-EIJK02/2020
 C3622T

EPI_ISL_437266
 2020-03-26 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0070/2020
 C541T G1440A G2891A G26774T G28371A

EPI_ISL_437304
 2020-03-26 2020-05-08
 Turkey hCoV-19/Turkey/HSGM-674/2020
 ATTAAA1- C241T C2113T C3037T C7765T C14408T C17690T C18877T A23403G C25549T G25563T

EPI_ISL_437309
 2020-03-26 2020-05-08
 Turkey hCoV-19/Turkey/HSGM-1049/2020
 ATTAAA1- C241T C1059T C3037T C3903T C6078Y C14408T C16616T A23403G A23734T G25563T

EPI_ISL_437314
 2020-03-26 2020-05-08
 Turkey hCoV-19/Turkey/HSGM-510/2020
 ATTAAA1- C884T G1397A T5182C C5736T G8653T G11083T C13476Y C23874T T28688C G29742T

EPI_ISL_437315
 2020-03-26 2020-05-08
 Turkey hCoV-19/Turkey/HSGM-942/2020
 ATTAAA1- C1059T C3037T G11083T C13476Y C14408T A23403G G25563T

EPI_ISL_437512 MT447177
 2020-03-26 2020-05-06
 Iran SARS-CoV-2/human/IRN/HGRC-2-2162/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- G1397A T8707C G20887A C21627T C22735T T28688C C28830T G29742T ATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29833-

EPI_ISL_437556
 2020-03-26 2020-05-11
 United States hCoV-19/USA/CA-SR0256/2020
 C241T C1059T C3037T C14408T A23403G T25536C G25563T C29870A

EPI_ISL_437559
 2020-03-26 2020-05-11
 United States hCoV-19/USA/CA-SR0252/2020
 C241T C1059T C3037T C12473T C14408T A23403G G25563T G28396A C29870A

EPI_ISL_437653
 2020-03-26 2020-05-11
 Denmark hCoV-19/Denmark/ALAB-SSI-1421/2020
 C241T C1059T C3037T C12781T C14408T C15842A G22103C A23403G G25563T

EPI_ISL_438110
 2020-03-26 2020-05-12
 Austria hCoV-19/Austria/CeMM0284/2020
 C241T C635Y C3037T G3980R A5078R G9844T A10842R C14408T T17568Y T18499A T19839C G22471R T22521K A23403G C28253Y GGG28881AAC GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_438111
 2020-03-26 2020-05-12
 Austria hCoV-19/Austria/CeMM0285/2020
 C241T C3037T C14408T T22521K A23403G C27046T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_438112
 2020-03-26 2020-05-12
 Austria hCoV-19/Austria/CeMM0287/2020
 C241T C3037T C14408T T19839C T22521K A23403G C28253Y GGG28881AAC GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_438113
 2020-03-26 2020-05-12
 Austria hCoV-19/Austria/CeMM0288/2020
 C241T C3037T C14408T T22521K A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_438152
 2020-03-26 2020-05-12
 United States hCoV-19/USA/WA-S599/2020
 C241T C1059T C3037T C14408T A23403G G25563T G29553A

EPI_ISL_438224
 2020-03-26 2020-05-12
 United States hCoV-19/USA/MD-HP00028/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_438240
 2020-03-26 2020-05-12
 United States hCoV-19/USA/MD-HP00085/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_439098
 2020-03-26 2020-05-12
 United Kingdom hCoV-19/Scotland/CVR739/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11109T C14408T C23185T A23403G C28253T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_439101
 2020-03-26 2020-05-12
 United Kingdom hCoV-19/Scotland/CVR750/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C541T C1059T C3037T G11083T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_439106
 2020-03-26 2020-05-12
 United Kingdom hCoV-19/Scotland/CVR764/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3871K C10798A C13862T C14408T C17010Y A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_441781
 2020-03-26 2020-05-12
 United Kingdom hCoV-19/Northern Ireland/NIRE-FA9B3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A11537G C14408T C14786T A23403G C28087T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_441975
 2020-03-26 2020-05-12
 United Kingdom hCoV-19/England/SHEF-C5650/2020
 C241T C3037T C5365T C12138T C14408T A23403G GGG28881AAC

EPI_ISL_442044
 2020-03-26 2020-05-12
 Iran hCoV-19/Iran/KHGRC-2-2162/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- G1397A T8707C G20887A C21627T C22735T T28688C C28830T G29742T ATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29833-

EPI_ISL_442397
 2020-03-26 2020-05-12
 United Kingdom hCoV-19/England/SHEF-CBB2E/2020
 C241T C3037T C14408T G21518T A23403G

EPI_ISL_442398
 2020-03-26 2020-05-12
 United Kingdom hCoV-19/England/SHEF-CBB5B/2020
 ATG1605- C20270T

EPI_ISL_442506
 2020-03-26 2020-05-12
 United Kingdom hCoV-19/England/SHEF-D21D7/2020
 C241T C3037T A11839G C14408T T19839C A23403G GGG28881AAC

EPI_ISL_442510
 2020-03-26 2020-05-12
 United Kingdom hCoV-19/England/SHEF-D2957/2020
 C241T C3037T C14408T C18713T A23403G GGG28881AAC

EPI_ISL_444794
 2020-03-26 2020-05-14
 Australia hCoV-19/Australia/QLDID940/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C1059T C3037T C14408T G16846T C18744T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_444986
 2020-03-26 2020-05-14
 Spain hCoV-19/Spain/Barcelona_VH8938/2020
 ATT1- C241T C3037T C14408T A20268G A23403G

EPI_ISL_444987
 2020-03-26 2020-05-14
 Spain hCoV-19/Spain/Barcelona_VH9434/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C3037T G5230T C14408T A20268G A23403G

EPI_ISL_444997
 2020-03-26 2020-05-14
 United States hCoV-19/USA/SC_NHRC_03/2020
 ATTAAAGGTTTAT1- C241T C1059T C3037T C14408T A23403G G25563T C29095T

EPI_ISL_444998
 2020-03-26 2020-05-14
 United States hCoV-19/Guam/GU_NHG_01/2020
 C6312A T8855C C10582T G11083T C12933T C13730T C23929T C28311T

EPI_ISL_445110
 2020-03-26 2020-05-15
 United States hCoV-19/USA/CA-SR0119/2020
 C1059T G1397A G8653T G11083T C14408T A23403G G25563T A25980C G29742T

EPI_ISL_445111
 2020-03-26 2020-05-15
 United States hCoV-19/USA/CA-SR0120/2020
 C241T C1059T C3037T C3365T C14408T A23403G C25386T G25563T G25757A

EPI_ISL_445344
 2020-03-26 2020-05-15
 Chile hCoV-19/Chile/Temuco_10/2020
 ATTAAAGGT1- C241T C3037T A3633R A5838C C8389T G9479K C12932Y C14408T T20880W A23403G C23912Y C25276T G25563T C27294Y C27741T C28292A ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_447119
 2020-03-26 2020-05-16
 Chile hCoV-19/Chile/Temuco_9/2020
 ATTA1- GGTTT7- TTCCCAGGTAA17- C241T TG2685CA A2697T T2703Y T2709K C3037T C8389T C14408T C18103T C18109T T18158C A23403G G25563T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_447184 MT506689
 2020-03-26 2020-05-16
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20213/2020
 C241T C1059T C1380T C3037T T10732W C14408T A23403G G25563T C26936Y

EPI_ISL_447189 MT506690
 2020-03-26 2020-05-16
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20219/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAA29898-

EPI_ISL_447229 MT506693
 2020-03-26 2020-05-16
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20259/2020
 C241T C3037T C14408T T15354C C18877T A23403G G25563T C29077T

EPI_ISL_447260
 2020-03-26 2020-05-17
 Israel hCoV-19/Israel/990333193/2020
 C241T C1059T C3037T C14408T C14708T A23403G G25563T AAAAAAAAAAAA29892-

EPI_ISL_447263
 2020-03-26 2020-05-17
 Israel hCoV-19/Israel/990307712/2020
 C241T C1059T C3037T C7945T C11916T C14408T C18998T A23403G G25563T G26062T G29440T G29540A AAAAAAAAAAAA29892-

EPI_ISL_447286
 2020-03-26 2020-05-17
 Israel hCoV-19/Israel/701002666/2020
 C241T C1059T C3037T C6070T C14408T G21123T A23403G G25563T AAAAAAAAAAAA29892-

EPI_ISL_447287
 2020-03-26 2020-05-17
 Israel hCoV-19/Israel/701002591/2020
 C241T C1059T C3037T C14408T A23403G G25563T C28887T AAAAAAAAAAAA29892-

EPI_ISL_447288
 2020-03-26 2020-05-17
 Israel hCoV-19/Israel/701002561/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAA29892-

EPI_ISL_447289
 2020-03-26 2020-05-17
 Israel hCoV-19/Israel/701002556/2020
 C241T C1059T C3037T C14408T A23403G G25563T C25603T AAAAAAAAAAAA29892-

EPI_ISL_447290
 2020-03-26 2020-05-17
 Israel hCoV-19/Israel/701002555/2020
 C241T C1059T C3037T C6070T C14408T G21123T A23403G G25563T AAAAAAAAAAAA29892-

EPI_ISL_447291
 2020-03-26 2020-05-17
 Israel hCoV-19/Israel/701002550/2020
 C241T C1059T C3037T C14408T A23403G G25563T G29528T AAAAAAAAAAAA29892-

EPI_ISL_447394
 2020-03-26 2020-05-17
 Israel hCoV-19/Israel/2047189/2020
 C241T C313T C3037T C8311T C14408T A23403G GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_447395
 2020-03-26 2020-05-17
 Israel hCoV-19/Israel/2047188/2020
 C241T C313T C3037T C8311T C14408T A23403G GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_447396
 2020-03-26 2020-05-17
 Israel hCoV-19/Israel/2047145/2020
 C241T C313T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_447397
 2020-03-26 2020-05-17
 Israel hCoV-19/Israel/2047016/2020
 C241T C3037T C14408T A20268G A23403G G29734C AAAAAAAAAAAA29892-

EPI_ISL_447417
 2020-03-26 2020-05-17
 Israel hCoV-19/Israel/1639996/2020
 C241T C1059T C3037T C3622T C14408T A23403G G25563T C27549T AAAAAAAAAAAA29892-

EPI_ISL_447418
 2020-03-26 2020-05-17
 Israel hCoV-19/Israel/1639953/2020
 C241T C1059T C3037T C14408T A20755C A23403G G25563T C29445T AAAAAAAAAAAA29892-

EPI_ISL_447472
 2020-03-26 2020-05-17
 Spain hCoV-19/Spain/Valencia/COV000521/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T T17126C A20268G A23403G TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_447473
 2020-03-26 2020-05-17
 Spain hCoV-19/Spain/Valencia/COV000522/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C18877T A23403G G24620T G25563T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_447493
 2020-03-26 2020-05-17
 Spain hCoV-19/Spain/Valencia/COV000551/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G3242T C14408T A20268G A23403G ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_447619
 2020-03-26 2020-05-18
 Taiwan hCoV-19/Taiwan/NTU25/2020
 C241T C3037T G4261R C8025T C14408T A20268G G22661T A23403G G29734C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_447734
 2020-03-26 2020-05-18
 Colombia hCoV-19/Colombia/GUR-0072/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C815T C8782T T9477A C14805T G25979T C26681T T28144C C28657T C28863T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_447735
 2020-03-26 2020-05-18
 Colombia hCoV-19/Colombia/GUR-0084/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G G25563T AGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29776-

EPI_ISL_447737
 2020-03-26 2020-05-18
 Colombia hCoV-19/Colombia/GUR-0135/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTG1- C241T TGGTCATGTTATGGT508- C1059T C3037T C5796T C14408T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_447738
 2020-03-26 2020-05-18
 Colombia hCoV-19/Colombia/GUR-0206/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C3037T C10507T C14408T C18877T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_448925
 2020-03-26 2020-05-19
 United Kingdom hCoV-19/Northern Ireland/NIRE-FAE1E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G11083T C14408T C14786T A23403G GGG28881AAC

EPI_ISL_449801
 2020-03-26 2020-05-19
 United States hCoV-19/USA/UT-00301/2020/P1
 C241T C1059T C3037T C14408T A23403G C24378T G25563T C27964T

EPI_ISL_450324
 2020-03-26 2020-05-20
 India hCoV-19/India/CCMB_NIV4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C8782T C11572T G22468T T28144C G28878A G29742A AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_450458 MT499184
 2020-03-26 2020-05-21
 United States SARS-CoV-2/human/USA/CA-CZB-1209/2020
 ATTAAAGG1-

EPI_ISL_450725
 2020-03-26 2020-05-22
 Belgium hCoV-19/Belgium/ITM_C067/2020
 C241T C3037T G4255T C11884T C14408T A23403G A26530G C29095T

EPI_ISL_450726
 2020-03-26 2020-05-22
 Belgium hCoV-19/Belgium/ITM_C068/2020
 C241T C1059T C3037T C14408T G15380T A23403G G25563T

EPI_ISL_450763
 2020-03-26 2020-05-22
 United States hCoV-19/USA/MN-MDH-295/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C3037T C14408T A23403G G25563T G26020T C27964T C28099T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_450765
 2020-03-26 2020-05-22
 United States hCoV-19/USA/MN-MDH-297/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- A38G A2480G C2558T G11083T C14805T G26144T TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_451090
 2020-03-26 2020-05-23
 Australia hCoV-19/Australia/SAP051/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T C3037T C14408T G18394T C18877T A23403G G25563T T26761C

EPI_ISL_451091
 2020-03-26 2020-05-23
 Australia hCoV-19/Australia/SAP052/2020
 C241T C3037T C14408T C15324T G22918T A23403G G28690T

EPI_ISL_451093
 2020-03-26 2020-05-23
 Australia hCoV-19/Australia/SAP054/2020
 C241T C1059T C3037T C14408T A23403G G25563T G25879T

EPI_ISL_451184
 2020-03-26 2020-05-23
 Uganda hCoV-19/Uganda/UG002/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C8782T C16293T T28144C G28878A G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_451405
 2020-03-26 2020-05-25
 United States hCoV-19/USA/NY-NYUMC690/2020
 C241T C3037T C14408T C18877T A23403G G25563T

EPI_ISL_451407
 2020-03-26 2020-05-25
 United States hCoV-19/USA/NY-NYUMC692/2020
 C241T C1059T C1387T C3037T C14408T C17135T A20755C A23403G T24194C G25563T

EPI_ISL_451409
 2020-03-26 2020-05-25
 United States hCoV-19/USA/NY-NYUMC694/2020
 C241T C1059T C3037T C14408T A23403G G25563T G29825T

EPI_ISL_451410
 2020-03-26 2020-05-25
 United States hCoV-19/USA/NY-NYUMC695/2020
 C241T C1059T C3037T C14408T A23403G G25563T G27593T A29499G

EPI_ISL_451412
 2020-03-26 2020-05-25
 United States hCoV-19/USA/NY-NYUMC697/2020
 C241T C1059T C3037T C11916T C14408T C18998T C22993T A23403G G25563T G29540A

EPI_ISL_451413
 2020-03-26 2020-05-25
 United States hCoV-19/USA/NY-NYUMC698/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_451414
 2020-03-26 2020-05-25
 United States hCoV-19/USA/NY-NYUMC699/2020
 C241T C1059T C3037T C11916T C13994T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_451416
 2020-03-26 2020-05-25
 United States hCoV-19/USA/NY-NYUMC701/2020
 C241T C1059T C3037T C7101T C14408T A23403G C24133T G25563T

EPI_ISL_451417
 2020-03-26 2020-05-25
 United States hCoV-19/USA/NY-NYUMC702/2020
 C241T C1059T C3037T C4113T C11916T C14408T C18998T A23403G G25552T G25563T G29540A

EPI_ISL_451418
 2020-03-26 2020-05-25
 United States hCoV-19/USA/NY-NYUMC703/2020
 C241T C1059T C3037T C6538T C14408T A23403G G25563T

EPI_ISL_451419
 2020-03-26 2020-05-25
 United States hCoV-19/USA/NY-NYUMC704/2020
 C241T C1059T C3037T C14408T G22037A A23403G G25563T

EPI_ISL_451421
 2020-03-26 2020-05-25
 United States hCoV-19/USA/NY-NYUMC706/2020
 C241T C1059T C3037T G6443A C14408T C15540T A23403G A25243G G25563T G28827T

EPI_ISL_451423
 2020-03-26 2020-05-25
 United States hCoV-19/USA/NY-NYUMC708/2020
 G199T C241T C1059T C3037T C14408T T15909A A23403G G25563T

EPI_ISL_451426
 2020-03-26 2020-05-25
 United States hCoV-19/USA/NY-NYUMC711/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_451428
 2020-03-26 2020-05-25
 United States hCoV-19/USA/NY-NYUMC713/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_451430
 2020-03-26 2020-05-25
 United States hCoV-19/USA/NY-NYUMC715/2020
 G199T C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_451431
 2020-03-26 2020-05-25
 United States hCoV-19/USA/NY-NYUMC716/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_451432
 2020-03-26 2020-05-25
 United States hCoV-19/USA/NY-NYUMC717/2020
 C241T C1059T C3037T C5211T C14408T A23403G G25563T

EPI_ISL_451437
 2020-03-26 2020-05-25
 United States hCoV-19/USA/NY-NYUMC722/2020
 C241T C1059T T2680C C3037T C14408T C16260T A23403G G23501T G25563T C28821A

EPI_ISL_451438
 2020-03-26 2020-05-25
 United States hCoV-19/USA/NY-NYUMC723/2020
 C241T C3037T T4579A C14408T G18898T A23403G GG28882AC

EPI_ISL_451441
 2020-03-26 2020-05-25
 United States hCoV-19/USA/NY-NYUMC726/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_451442
 2020-03-26 2020-05-25
 United States hCoV-19/USA/NY-NYUMC727/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_451445
 2020-03-26 2020-05-25
 United States hCoV-19/USA/NY-NYUMC730/2020
 C241T C1059T C3037T C11882T C14408T A23403G G25563T

EPI_ISL_451446
 2020-03-26 2020-05-25
 United States hCoV-19/USA/NY-NYUMC731/2020
 C241T C1059T C3037T G7560A C14408T C15960T C21221T A23403G G25563T

EPI_ISL_451447
 2020-03-26 2020-05-25
 United States hCoV-19/USA/NY-NYUMC732/2020
 C241T C1059T C3037T C11916T C14408T G20002T A23403G G25563T G28376T

EPI_ISL_451449
 2020-03-26 2020-05-25
 United States hCoV-19/USA/NY-NYUMC734/2020
 C241T C1059T C3037T C11916T C13620T C14408T C14925T C18998T C19983T A23403G G25049T G25563T G29540A

EPI_ISL_451451
 2020-03-26 2020-05-25
 United States hCoV-19/USA/NY-NYUMC736/2020
 G199T C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_451454
 2020-03-26 2020-05-25
 United States hCoV-19/USA/NY-NYUMC739/2020
 C241T C1059T C3037T C14408T A23403G G25494A G25563T

EPI_ISL_451458
 2020-03-26 2020-05-25
 United States hCoV-19/USA/NY-NYUMC743/2020
 C241T C1059T C3037T C12084T C14408T C16260T A23403G G25563T C28821A

EPI_ISL_451461
 2020-03-26 2020-05-25
 United States hCoV-19/USA/NY-NYUMC746/2020
 C241T C1059T C3037T T6871C C14408T A23403G G25563T A26433G

EPI_ISL_451466
 2020-03-26 2020-05-25
 United States hCoV-19/USA/NY-NYUMC752/2020
 C241T C3037T G10265A C14408T A23403G C28657T GGG28881AAC

EPI_ISL_451469
 2020-03-26 2020-05-25
 United States hCoV-19/USA/NY-NYUMC755/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_451474
 2020-03-26 2020-05-25
 United States hCoV-19/USA/NY-NYUMC760/2020
 C241T C1059T C3037T G14294A C14408T A23403G G25563T

EPI_ISL_451475
 2020-03-26 2020-05-25
 United States hCoV-19/USA/NY-NYUMC761/2020
 C241T C1059T C3037T C14408T A23403G C23453T G25563T

EPI_ISL_451759 LR824330
 2020-03-26 2020-05-25
 Switzerland 100809
 C241T C3037T G11083T C14408T C15324T C18060Y A23403G G28690K C29831T

EPI_ISL_451760 LR824326
 2020-03-26 2020-05-25
 Switzerland 100810
 C241T C3037T C14408T C15324T G19312R G22436R A23403G C26882Y

EPI_ISL_451763 LR824321
 2020-03-26 2020-05-25
 Switzerland 100813
 C241T C3037T C14408T C15324T A19298W C19318Y T19344K C19522Y G19528R T22516W A23403G T25434K C27689T

EPI_ISL_451764 LR824318
 2020-03-26 2020-05-25
 Switzerland 100814
 C241T C3037T C14408T C15324T T19355W C22000M A22456W A23403G

EPI_ISL_451766 LR824317
 2020-03-26 2020-05-25
 Switzerland 100816
 C241T C3037T C14408T C15324T A22411W A23403G

EPI_ISL_451767 LR824324
 2020-03-26 2020-05-25
 Switzerland 100817
 C241T C1059T C3037T C14408T C22347S A23403G G25563T

EPI_ISL_451769 LR824325
 2020-03-26 2020-05-25
 Switzerland 100820
 C241T C3037T C14408T C15324T A19303R T19383W C22347S T22362W A22422R G22427T A23403G

EPI_ISL_451770 LR824323
 2020-03-26 2020-05-25
 Switzerland 100821
 C241T C3037T G6352T C8293T C14408T T18488C A19471R A19496W T22516W A23403G T24739C A26530R G29825K

EPI_ISL_451776 LR824342
 2020-03-26 2020-05-25
 Switzerland 100827
 C241T C3037T C14408T C15324T G19406R T22516W A22980W A23403G G29477K

EPI_ISL_452185
 2020-03-26 2020-05-27
 Italy hCoV-19/Italy/VR_20COV23-50/2020
 TTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATC2- C98T G127T C241T C3037T C14408T A23403G TGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29785-

EPI_ISL_452204
 2020-03-26 2020-05-27
 India hCoV-19/India/NIV-5109/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C8782T C17440T G22468T CGCTTC26351- T28144C G28878A G29742A A29827T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830T

EPI_ISL_452205
 2020-03-26 2020-05-27
 India hCoV-19/India/NIV-5119/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C8782T C17440T G19816T G22468T T28144C G28878A G29742A A29827T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830T

EPI_ISL_452570
 2020-03-26 2020-05-27
 Spain hCoV-19/Spain/COV001169/2020
 C8782T T9477A G10787T C14805T G25979T G26314R T28144C C28657T C28863T

EPI_ISL_452593
 2020-03-26 2020-05-27
 Spain hCoV-19/Spain/COV001093/2020
 C241T C3037T T7148C C14408T A20268G A23403G T24829C

EPI_ISL_452597
 2020-03-26 2020-05-27
 Spain hCoV-19/Spain/COV001089/2020
 C241T C3037T C14408T A20268G A22155G A23403G

EPI_ISL_452598
 2020-03-26 2020-05-27
 Spain hCoV-19/Spain/COV001088/2020
 C241T ATG518- C3037T G8575A C14408T A20268G A23403G C26622T

EPI_ISL_452606
 2020-03-26 2020-05-27
 Spain hCoV-19/Spain/COV001078/2020
 C241T C3037T A9483G C14408T A20268G A23403G G25644A C29614T

EPI_ISL_452657
 2020-03-26 2020-05-27
 Spain hCoV-19/Spain/COV000910/2020
 C241T C3037T C14408T A23403G C24921T GGG28881AAC

EPI_ISL_452671
 2020-03-26 2020-05-27
 Spain hCoV-19/Spain/COV000892/2020
 C241T C2048T C3037T C6543T C14408T A23403G C26822T GGG28881AAC

EPI_ISL_453851
 2020-03-26 2020-05-28
 Portugal hCoV-19/Portugal/PT0135/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C13680T C14408T C17104T A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_453852
 2020-03-26 2020-05-28
 Portugal hCoV-19/Portugal/PT0136/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T G5230T C14408T A20268G A23403G C27630T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_453853
 2020-03-26 2020-05-28
 Portugal hCoV-19/Portugal/PT0137/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- A2480G C2558T G11083T C14805T T24052C G26144T C29686T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454168
 2020-03-26 2020-05-28
 Portugal hCoV-19/Portugal/PT0444/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T A761G C1059T C3037T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454169
 2020-03-26 2020-05-28
 Portugal hCoV-19/Portugal/PT0445/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A20268G A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454287
 2020-03-26 2020-05-28
 Portugal hCoV-19/Portugal/PT0564/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T C17639T A20268G A23403G C28638T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454288
 2020-03-26 2020-05-28
 Portugal hCoV-19/Portugal/PT0565/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- A2480G C2558T C9661T G11083T C14805T G26144T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454294
 2020-03-26 2020-05-28
 Portugal hCoV-19/Portugal/PT0571/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G G26209A GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454295
 2020-03-26 2020-05-28
 Portugal hCoV-19/Portugal/PT0572/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454326
 2020-03-26 2020-05-28
 Portugal hCoV-19/Portugal/PT0603/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC C29296T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454345
 2020-03-26 2020-05-28
 Portugal hCoV-19/Portugal/PT0622/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G C23481T G25273T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454346
 2020-03-26 2020-05-28
 Portugal hCoV-19/Portugal/PT0623/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3140T C13059T C14408T A23403G G24077T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454772
 2020-03-26 2020-05-29
 Netherlands hCoV-19/Netherlands/Utrecht_10023/2020
 ATTAAA1- C241T C3037T C10369T C14408T C20148T A23403G G29422T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_454773
 2020-03-26 2020-05-29
 Netherlands hCoV-19/Netherlands/Utrecht_10024/2020
 ATTAAA1- G1440A G2891A C10138T T27483C G28378T AAAAAA29898-

EPI_ISL_455202
 2020-03-26 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_400/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2113T C3037T C7765T C14408T C17690T C17977T C18877T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455286
 2020-03-26 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_484/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16887T C20031A A23403G C25546T C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455450
 2020-03-26 2020-05-29
 Poland hCoV-19/Poland/PL_P37/2020
 C241T C1059T C3037T C9214T C10889T C14408T A23403G G25563T C25821T

EPI_ISL_455989
 2020-03-26 2020-06-01
 United States hCoV-19/USA/LA-EVTL146/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_455991
 2020-03-26 2020-06-01
 United States hCoV-19/USA/LA-EVTL148/2020
 C241T C1059T C3037T C14408T C17825T A18487G A23403G G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_456007
 2020-03-26 2020-06-01
 United States hCoV-19/USA/NY-NYUMC770/2020
 C241T C920T C1059T C3037T C14408T A23403G G25563T C29675T

EPI_ISL_456019
 2020-03-26 2020-06-01
 United States hCoV-19/USA/NY-NYUMC782/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_456029
 2020-03-26 2020-06-01
 United States hCoV-19/USA/NY-NYUMC793/2020
 C241T C3037T C6198T G11083T C14408T T17781C C18877T A23403G G25563T

EPI_ISL_456031
 2020-03-26 2020-06-01
 United States hCoV-19/USA/NY-NYUMC795/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_456051
 2020-03-26 2020-06-01
 United States hCoV-19/USA/NJ-NYUMC815/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_456063
 2020-03-26 2020-06-01
 United States hCoV-19/USA/NY-NYUMC827/2020
 C241T T658C C1059T C3037T A10691G C14408T C18457T A23403G G25563T

EPI_ISL_456066
 2020-03-26 2020-06-01
 United States hCoV-19/USA/NY-NYUMC791/2020
 C8078T G11083T C14805T A15911G T17247C G26144T A27633G T28251G CA28253TC

EPI_ISL_456242
 2020-03-26 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1771/2020
 C3096T G11083T C12781T G13627T C14805T C15540T G17944T G26144T A28338G

EPI_ISL_456243
 2020-03-26 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1772/2020
 C241T C3037T C14408T G20275T A23403G G25429T

EPI_ISL_456244
 2020-03-26 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1773/2020
 C241T C3037T C7765A C13684T C14408T A23403G GGG28881AAC

EPI_ISL_456245
 2020-03-26 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1776/2020
 C241T C3037T C6723T C14408T T16695C A23403G T26094C

EPI_ISL_456246
 2020-03-26 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1777/2020
 C241T C1059T C3037T C14408T C16260T A23403G G25563T C28821A

EPI_ISL_456248
 2020-03-26 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1779/2020
 C241T T1918C C3037T C14408T C18877T A23403G G24926T G25563T

EPI_ISL_456249
 2020-03-26 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1780/2020
 C241T C3037T C6723T C14408T A23403G T26094C

EPI_ISL_456251
 2020-03-26 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1782/2020
 C241T C1059T C3037T C11916T C14408T A16344G C18998T A23403G G25563T C27741T C29296T G29540A

EPI_ISL_456252
 2020-03-26 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1783/2020
 C2013T C3096T G11083T C12781T G13627T C14805T C15540T G17944T G26144T A28338G A29731G

EPI_ISL_456894
 2020-03-26 2020-06-02
 United Kingdom hCoV-19/Scotland/EDB213/2020
 C241T C3037T C14408T A23403G C25433T

EPI_ISL_457127
 2020-03-26 2020-06-02
 United Kingdom hCoV-19/England/EXET-135A21/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_457128
 2020-03-26 2020-06-02
 United Kingdom hCoV-19/England/EXET-135A30/2020
 G1440A G2891A A27669G

EPI_ISL_457132
 2020-03-26 2020-06-02
 United Kingdom hCoV-19/England/EXET-135AA9/2020
 C241T C3037T C4296T T10388C C14408T A23403G GGG28881AAC

EPI_ISL_457750
 2020-03-26 2020-06-02
 Germany hCoV-19/Germany/COV7/2020-03-26
 C241T C1059T C3037T C3426T C14408T G15380T A23403G G25563T

EPI_ISL_457809 MT646079
 2020-03-26 2020-06-02
 United States SARS-CoV-2/human/USA/DC-HP00116/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_457995
 2020-03-26 2020-06-02
 Oman hCoV-19/Oman/RESP-20-6081/2020
 C1473T G11083T C14805T T17247C G26144T

EPI_ISL_458132
 2020-03-26 2020-06-03
 Spain hCoV-19/Spain/Barcelona_VH9758/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C3037T C9988T C14408T A20268G A23403G G29734C

EPI_ISL_458231
 2020-03-26 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0326261/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14120T C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458622
 2020-03-26 2020-06-04
 United Kingdom hCoV-19/England/NORT-288FD4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458623
 2020-03-26 2020-06-04
 United Kingdom hCoV-19/England/NORT-289067/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G5230T C14408T A20268G A23403G CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_459535
 2020-03-26 2020-06-04
 United Kingdom hCoV-19/Scotland/GCVR-1713A6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G G24197T G25563T C26735T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_459869
 2020-03-26 2020-06-04
 Canada hCoV-19/Canada/ON_QGLO-010/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T G5230T C14408T A20268G A23403G G26365A AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_459871
 2020-03-26 2020-06-04
 Canada hCoV-19/Canada/ON_QGLO-011/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C9994A C14408T A23403G G25563T G28368A AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852TA

EPI_ISL_459872
 2020-03-26 2020-06-04
 Canada hCoV-19/Canada/ON_QGLO-012/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C3373A C9733T C14408T A23403G GGG28881AAC TCTT29856CTAG G29862A GA29864AG -29867GTGTGTCTCACTC A29869T AAA29871GTT AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876TGC

EPI_ISL_459873
 2020-03-26 2020-06-04
 Canada hCoV-19/Canada/ON_QGLO-016/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T T6846A C14408T A23403G G25217T G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_460008
 2020-03-26 2020-06-05
 United States hCoV-19/USA/MI-MDHHS-SC20469/2020
 T177C T490A C3177T C8782T T18736C G19684T C24034T T26729C C27635T G28077C T28144C A29700G

EPI_ISL_460107 MT520182
 2020-03-26 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00157/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C241T C2416T C3037T C14408T A17344G A23403G G25563T G26233T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_460114 MT520189
 2020-03-26 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00143/2020
 ATTAAA1- T490A C3177T C5784T C8782T G9116A C15613T T18736C G19684T C24034T T26729C C27635T C27999T G28077C T28144C A29700G AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_460124 MT520199
 2020-03-26 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00182/2020
 ATTAAAGGTTTAT1- C100T C241T C2416T C3037T C14408T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460150 MT520225
 2020-03-26 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00021/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T C1059T C3037T C14408T C15712A A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_460170 MT520245
 2020-03-26 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00145/2020
 ATTAAA1- T490A C3177T C5784T C8782T G9116A C15613T T18736C G19684T C24034T T26729C C27635T C27999T G28077C T28144C A29700G AAAAAAAAAAAAAAAAAAAA29884-

EPI_ISL_460183 MT520258
 2020-03-26 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00161/2020
 ATTAAA1- C241T C2416T C3037T C14408T A23403G G25563T T29452C AAAAAAAAAAAAAAAAA29887-

EPI_ISL_460203 MT520278
 2020-03-26 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00195/2020
 ATTAAA1- C241T C2416T C3037T T10216C C14408T A23403G G25563T G26233T AAAAAAAAAAAAAAAAAA29886-

EPI_ISL_460209 MT520284
 2020-03-26 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00177/2020
 ATTAAA1- C241T C1059T C3037T C14408T G16068A C19164T T22078C A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_460221 MT520296
 2020-03-26 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00187/2020
 ATTAAA1- C241T C2416T C3037T C14408T G19481T A23403G C24138T G25563T C25916T G26233T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_460238 MT520313
 2020-03-26 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00151/2020
 ATTAA1- C241T C1059T C1387T C3037T C14408T A20755C A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_460261 MT520336
 2020-03-26 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00156/2020
 ATTAAA1- G105T C241T C3037T C14408T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_460263 MT520338
 2020-03-26 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00190/2020
 ATTAAA1- C241T C1059T C3037T C11916T C14408T C19220T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_460280 MT520355
 2020-03-26 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00209/2020
 ATTAAA1- A1515G C9223T G11083T C14805T T17247C G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_460301 MT520376
 2020-03-26 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00159/2020
 ATTAAAGGTTTATACCTTCCC1- G105T C241T C3037T C14408T C18877T A23403G G25563T G29751C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_460304 MT520379
 2020-03-26 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00192/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C1059T C3037T C14408T G19825T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_460339 MT520414
 2020-03-26 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00155/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T C17104T G22226C A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_460359 MT520434
 2020-03-26 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00140/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T C1059T C3037T C14408T C16260T G21604T A23403G G25563T C28821A AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460368 MT520443
 2020-03-26 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00194/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T C1059T C3037T C14408T G15760A G20056A A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_460372 MT520447
 2020-03-26 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00189/2020
 ATTAAA1- C241T C3037T G8653T C14408T A23403G GGG28881AAC AAAAAAAA29896-

EPI_ISL_460394 MT520469
 2020-03-26 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00160/2020
 ATTAAA1- C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAA29885-

EPI_ISL_460409 MT520484
 2020-03-26 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00149/2020
 ATTAAA1- C241T C2416T C3037T C14408T A23403G G25563T C25792T AAAAAAAAAAAAAAAAAAAA29884-

EPI_ISL_460417 MT520492
 2020-03-26 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00164/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C1059T C3037T C14408T T20769C A23403G G25563T G26104A G28857T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460447 MT520522
 2020-03-26 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00152/2020
 ATTAA1- C241T C1059T A2165G C3037T C14408T A23403G G25563T G29711T AAAAAAAAAAAAAAAAAAAA29884-

EPI_ISL_460451 MT520526
 2020-03-26 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00179/2020
 ATTAAA1- C241T C2416T C3037T C14408T A23403G G25563T A25759G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_460453 MT520528
 2020-03-26 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00165/2020
 ATTAAA1- C241T GTCATGTTA510- C3037T C10279T C12132T C14408T T16077C T20401C A23403G C28603T G28899T AAAAAAAAAAAAAAAAAA29886-

EPI_ISL_460457 MT520532
 2020-03-26 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00181/2020
 ATTAAA1- C241T AAGTCATTT686- C2416T C3037T G5665A C14408T A23403G C24096A G25563T AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_460462 MT520537
 2020-03-26 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00150/2020
 ATTAAA1- C241T C1059T C3037T C11916T A12103G C14408T C18998T A23403G A24069C G25563T G29540A CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_460466 MT520541
 2020-03-26 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00178/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAA1- C241T C1059T C3037T C14408T A23403G G25145C G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_460671
 2020-03-26 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_498/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C478T C3037T C9693T G12550A C14408T C17825T A20268G C20740A A23403G C25578T C27610T C28854T G29734C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460682
 2020-03-26 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_509/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4255T C14408T T14739C A23403G A26530G G28851T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460703
 2020-03-26 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_530/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C478T C3037T G12550A C14408T A20268G C20740A A23403G C29548A G29734C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460948
 2020-03-26 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_48/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T A10323G C14408T T15696G A23403G G27514T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461118
 2020-03-26 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_683/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461125
 2020-03-26 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_690/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C18894T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461126
 2020-03-26 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_691/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461159
 2020-03-26 2020-06-06
 Netherlands hCoV-19/Netherlands/NoordBrabant_124/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- T6353C C17410T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461281
 2020-03-26 2020-06-06
 Netherlands hCoV-19/Netherlands/Zeeland_42/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1537C C3037T T13006C C14408T G19684T A23403G G25563T C25688T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_462169
 2020-03-26 2020-06-08
 Belgium hCoV-19/Belgium/RR-0326315/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462170
 2020-03-26 2020-06-08
 Belgium hCoV-19/Belgium/PF-0326316/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3096T C14408T A20268G A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462176
 2020-03-26 2020-06-08
 Belgium hCoV-19/Belgium/IL-0326322/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A3859G G11083T C14805T T17247C G26144T A29598G G29648T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462177
 2020-03-26 2020-06-08
 Belgium hCoV-19/Belgium/BA-0326323/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1666C C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462190
 2020-03-26 2020-06-08
 Belgium hCoV-19/Belgium/DGL-0326336/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A C7011T A9424T G19620A C26873T G28812T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462204
 2020-03-26 2020-06-08
 Belgium hCoV-19/Belgium/DC-0326350/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T19839C A23403G C24099T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462245
 2020-03-26 2020-06-08
 Belgium hCoV-19/Belgium/TMG-0326391/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G15438T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462345
 2020-03-26 2020-06-08
 Singapore hCoV-19/Singapore/227/2020
 C6310A C6312A G11083T C13730T C19524T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_462351
 2020-03-26 2020-06-08
 Singapore hCoV-19/Singapore/233/2020
 C5849T C6310A C6312A G11083T C13517T C13730T C19524T G22021R C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_462467
 2020-03-26 2020-06-08
 Bosnia and Herzegovina hCoV-19/Bosnia and Herzegovina/ChVir7365/2020
 ATTAAAGGTTTATACCTT1- C241T C3037T G8006A C10336T C14408T A23403G C28657T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_462957
 2020-03-26 2020-06-08
 United States hCoV-19/USA/WY-WYPHL-00065/2020
 ATT1- C241T C1059T C3037T C14408T A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_463973
 2020-03-26 2020-06-11
 Canada hCoV-19/Canada/ON_MU-S212/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T C17125Y TTTGTATGTAAATAAACATGCATTCCACACACCAGCTTTTGATAAAA19293- T19344- C19366- A23403G G25563T G28368A TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_463974
 2020-03-26 2020-06-11
 Canada hCoV-19/Canada/ON_MU-S218/2020
 ATTAAAG1- C241T C3037T C14408T TTTGTATGTA19293- ACATGCATTCCACACACCAGCTTTTGATAAAAGTGCTTTTGTTAATTTAAAACAATTACCATTTTTCTATTACTCTGACAGTCCATGTGAGTCTCATGGAAAACAAGTAGTGTCAGATATAGATTATGTACCACTAAAGTCTGCTACGTGTATAACACGTTGCAATTTAGGTGGT19308- A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_464140
 2020-03-26 2020-06-11
 South Africa hCoV-19/SouthAfrica/Tygerberg_29/2020
 C241T A1515G C4002T T8022G G10097A C13536T C14408T C14805T T17247C T20891G A23403G C23731T AG24389CC G26144T GGG28881AAC

EPI_ISL_465683
 2020-03-26 2020-06-11
 Canada hCoV-19/Canada/Qc-L00240746/2020
 ATT1- C241T C1059T C3037T C14408T A23403G G25217T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_465684
 2020-03-26 2020-06-11
 Canada hCoV-19/Canada/Qc-L00240750/2020
 ATT1- C241T C1059T C3037T C14408T A23403G G25217T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_465697
 2020-03-26 2020-06-11
 Canada hCoV-19/Canada/Qc-L00241112/2020
 ATT1- C241T C1059T C3037T C9474T T14079A C14408T A23403G G25563T C25688A AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_465869
 2020-03-26 2020-06-11
 United Kingdom hCoV-19/England/20140002504/2020
 A2480G C2558T T9596Y C9603Y C14805T G20476T G26144T

EPI_ISL_465996
 2020-03-26 2020-06-11
 United Kingdom hCoV-19/England/20144023604/2020
 G1440A G2891A C7834T C10543T A27669G C28310M

EPI_ISL_467956
 2020-03-26 2020-06-16
 United States hCoV-19/USA/CA-SR0425/2020
 C8782T C17470T C26088T T28144C

EPI_ISL_467962
 2020-03-26 2020-06-16
 United States hCoV-19/USA/CA-SR0432/2020
 C241T C379A C1059T C3037T G4657A C14408T G21578T A23403G G25563T

EPI_ISL_468014
 2020-03-26 2020-06-16
 Australia hCoV-19/Australia/SAP246/2020
 ATTAAAGGTTTA1- C241T G677A C3037T C14408T G14580T A23403G

EPI_ISL_468026
 2020-03-26 2020-06-16
 Australia hCoV-19/Australia/SAP221/2020
 C241T C3037T C14408T C20762T C21575T A23403G GGG28881AAC

EPI_ISL_468311
 2020-03-26 2020-06-16
 Brazil hCoV-19/Brazil/SPBR-146/2020
 C241T C3037T A6319G T8215C C14408T A23403G G25088T T26149C GGG28881AAC AAAAAAAAAAAAA29891-

EPI_ISL_468312
 2020-03-26 2020-06-16
 Brazil hCoV-19/Brazil/SPBR-147/2020
 G24T C241T C3037T C12053T G14028K C14408T A23403G G25088T C28724Y GGG28881AAC AAAAAAAAAAAAA29891-

EPI_ISL_468314
 2020-03-26 2020-06-16
 Brazil hCoV-19/Brazil/SPBR-149/2020
 C241T C3037T C12053T C14408T A23403G G25088T GGG28881AAC AAAAAAAAAAAAA29891-

EPI_ISL_468407 MT628143
 2020-03-26 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1437/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T T833C C1059T C3037T C14408T T28144C C28253Y A29671W

EPI_ISL_468521 MT628244
 2020-03-26 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1591/2020
 C959A C6445Y A10323G T17907C C28507Y TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_468522 MT628245
 2020-03-26 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1592/2020
 C241T C3037T G7452T C8389T C10741Y C14408T A23403G T25520A G25563T G27478K C29420Y ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_468805
 2020-03-26 2020-06-17
 Spain hCoV-19/Spain/Zaragoza2428/2020
 C241T C3037T C12513Y C14408T A20268G A23403G

EPI_ISL_468832
 2020-03-26 2020-06-17
 Spain hCoV-19/Spain/Alcaniz2408/2020
 C241T C3037T C14408T T17126C A20268G C20669Y A23403G

EPI_ISL_470849
 2020-03-26 2020-06-19
 Australia hCoV-19/Australia/WA32/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_470896
 2020-03-26 2020-06-19
 Russia hCoV-19/Russia/Moscow_PMVL-2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_471219
 2020-03-26 2020-06-19
 United States hCoV-19/USA/WI-WSLH-200054/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A4840C C14408T T17023C G22988A A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471258
 2020-03-26 2020-06-19
 United States hCoV-19/USA/WI-WSLH-200094/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C8782T T18736C C23525T C24034T T26729C A27234T C27635T G28077C T28144C A29567C A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475142
 2020-03-26 2020-06-23
 Sweden hCoV-19/Sweden/20-50482/2020
 C241T C1059T C3037T C14408T G23282T A23403G G24368T G25563T

EPI_ISL_475143
 2020-03-26 2020-06-23
 Sweden hCoV-19/Sweden/20-50486/2020
 C241T C1059T C1101T C3037T C14408T A23403G G25563T G29711T

EPI_ISL_475564
 2020-03-26 2020-06-23
 Sweden hCoV-19/Sweden/20-06523/2020
 C241T C3037T C14408T A23403G GGG28881AAC GCGGAGT29742-

EPI_ISL_475600
 2020-03-26 2020-06-23
 United States hCoV-19/USA/CA-CSMC123/2020
 C241T C1059T C3037T C9967T C14408T A23403G G25563T C27964T

EPI_ISL_475608
 2020-03-26 2020-06-23
 United States hCoV-19/USA/CA-CSMC130/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_475609
 2020-03-26 2020-06-23
 United States hCoV-19/USA/CA-CSMC131/2020
 C241T C379A C1059T C3037T C14408T A23403G C25000T G25563T

EPI_ISL_475610
 2020-03-26 2020-06-23
 United States hCoV-19/USA/CA-CSMC132/2020
 T8517C T8883C T13952C G15921A C18060T T19876C C24130T C25782T T28144C

EPI_ISL_475611
 2020-03-26 2020-06-23
 United States hCoV-19/USA/CA-CSMC133/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_475613
 2020-03-26 2020-06-23
 United States hCoV-19/USA/CA-CSMC135/2020
 C2676T C8782T A22606T C26029A T28144C G28878A G29742A

EPI_ISL_475637
 2020-03-26 2020-06-23
 United States hCoV-19/USA/CA-CSMC27/2020
 C241T C3037T C14408T C18877T A23403G G25563T

EPI_ISL_475685
 2020-03-26 2020-06-23
 United States hCoV-19/USA/CA-CSMC70/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_475687
 2020-03-26 2020-06-23
 United States hCoV-19/USA/CA-CSMC72/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27661T

EPI_ISL_475688
 2020-03-26 2020-06-23
 United States hCoV-19/USA/CA-CSMC73/2020
 C241T C1059T C3037T T13575C C14408T T16506C A23403G C25466T G25563T

EPI_ISL_475689
 2020-03-26 2020-06-23
 United States hCoV-19/USA/CA-CSMC74/2020
 C241T A1631C C3037T C14408T C18877T A23403G G25563T

EPI_ISL_475692
 2020-03-26 2020-06-23
 United States hCoV-19/USA/CA-CSMC77/2020
 C241T C1059T C3037T T13575C C14408T T16506C A23403G C25466T G25563T

EPI_ISL_475693
 2020-03-26 2020-06-23
 United States hCoV-19/USA/CA-CSMC78/2020
 C241T C1059T C3037T T3668G G3671T C14408T G19348T C22311T C22689T A23403G C25199A G25563T T27687C C28311T

EPI_ISL_475694
 2020-03-26 2020-06-23
 United States hCoV-19/USA/CA-CSMC79/2020
 C241T C379A C897T C1059T C2110T C3037T G8548T C9344T C14408T A23403G G25563T

EPI_ISL_475696
 2020-03-26 2020-06-23
 United States hCoV-19/USA/CA-CSMC80/2020
 C241T A2120T C3290G GACCACTT3549- T6644C C11511G C13446T A13834T C14408T G15766T T22451A G29477T

EPI_ISL_475699
 2020-03-26 2020-06-23
 United States hCoV-19/USA/CA-CSMC83/2020
 C241T C1059T C3037T C9967T C14408T A23403G G25563T C27964T

EPI_ISL_475700
 2020-03-26 2020-06-23
 United States hCoV-19/USA/CA-CSMC84/2020
 C241T C313T C3037T G3470A G12274A C14408T A17709G A23403G GGG28881AAC

EPI_ISL_475703
 2020-03-26 2020-06-23
 United States hCoV-19/USA/CA-CSMC87/2020
 C241T C3037T C14408T C18877T G21123T A21137G A23403G G25563T

EPI_ISL_475704
 2020-03-26 2020-06-23
 United States hCoV-19/USA/CA-CSMC88/2020
 C364T TT692AA A1667C A8590G C10956A T11038C C18060T G18320T A18564C C19160T T25434C A25823T T28144C C29218G

EPI_ISL_475705
 2020-03-26 2020-06-23
 United States hCoV-19/USA/CA-CSMC89/2020
 C241T C1059T C3037T C14408T A23403G G25563T G28812T C29253T

EPI_ISL_475818
 2020-03-26 2020-06-25
 Austria hCoV-19/Austria/CeMM0373/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C26366Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475841
 2020-03-26 2020-06-25
 Austria hCoV-19/Austria/CeMM0409/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T19839C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475860
 2020-03-26 2020-06-25
 Austria hCoV-19/Austria/CeMM0433/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476821
 2020-03-26 2020-06-26
 Singapore hCoV-19/Singapore/487/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6026T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477620
 2020-03-26 2020-06-29
 Hungary hCoV-19/Hungary/US-2901w/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T658C C3037T C14408T A23403G A24862G C28629T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478575
 2020-03-26 2020-06-30
 United Kingdom hCoV-19/England/NORT-284A31/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T A23403G C23731T C28153T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478580
 2020-03-26 2020-06-30
 United Kingdom hCoV-19/England/NORT-284B98/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8092T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478581
 2020-03-26 2020-06-30
 United Kingdom hCoV-19/England/NORT-284BA7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478582
 2020-03-26 2020-06-30
 United Kingdom hCoV-19/England/NORT-284BB6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21859T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478583
 2020-03-26 2020-06-30
 United Kingdom hCoV-19/England/NORT-284BC5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478584
 2020-03-26 2020-06-30
 United Kingdom hCoV-19/England/NORT-284BD4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478585
 2020-03-26 2020-06-30
 United Kingdom hCoV-19/England/NORT-284C3B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G27996T G28681A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478586
 2020-03-26 2020-06-30
 United Kingdom hCoV-19/England/NORT-284C86/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A C10507T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478587
 2020-03-26 2020-06-30
 United Kingdom hCoV-19/England/NORT-284C95/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13176T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478588
 2020-03-26 2020-06-30
 United Kingdom hCoV-19/England/NORT-284CA4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18377T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479178
 2020-03-26 2020-06-30
 United Kingdom hCoV-19/England/PORT-2D12E2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C683T A1515G C9223T G11083T C14805T T17247C A17799G C21161T G26144T C27688T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479180
 2020-03-26 2020-06-30
 United Kingdom hCoV-19/England/PORT-2D130D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5310T T11236C C14408T C15763T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479181
 2020-03-26 2020-06-30
 United Kingdom hCoV-19/England/PORT-2D131C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5340T C14408T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479186
 2020-03-26 2020-06-30
 United Kingdom hCoV-19/England/PORT-2D1367/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1457T A2480G C2558T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479189
 2020-03-26 2020-06-30
 United Kingdom hCoV-19/England/PORT-2D1394/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1457T A2480G C2558T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479192
 2020-03-26 2020-06-30
 United Kingdom hCoV-19/England/PORT-2D13D0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1461G C3037T C5730T C14408T G19542T A23403G G24328A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479637
 2020-03-26 2020-07-01
 Canada hCoV-19/Canada/NB-221/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11455T C14408T G21724T A23403G GGG28881AAC ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_479639
 2020-03-26 2020-07-01
 Canada hCoV-19/Canada/NB-223/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T T20787C G26144T T28106C G28842T ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_479640
 2020-03-26 2020-07-01
 Canada hCoV-19/Canada/NB-224/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G11083T C14805T G26144T ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_479641
 2020-03-26 2020-07-01
 Canada hCoV-19/Canada/NB-225/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1758T C3037T C14408T C19903T A23403G G25563T ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_479971
 2020-03-26 2020-07-01
 Japan hCoV-19/Japan/PG-0294/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480001
 2020-03-26 2020-07-01
 Japan hCoV-19/Japan/PG-0326/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C313T C3037T C14408T A23403G G25563C G28178T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480024
 2020-03-26 2020-07-01
 Japan hCoV-19/Japan/PG-0352/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C9430T C14408T G22199T A23403G GGG28881AAC G29447T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_480073
 2020-03-26 2020-07-01
 Japan hCoV-19/Japan/PG-0404/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C313T C2902T C3037T C6151A C14408T A23403G GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_480085
 2020-03-26 2020-07-01
 Japan hCoV-19/Japan/PG-0417/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- G3179A C6982T C8782T C25587T G26713T T28144C C29739T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480225
 2020-03-26 2020-07-01
 Japan hCoV-19/Japan/PG-0293/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T G11083T -11180T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481622
 2020-03-26 2020-07-03
 Finland hCoV-19/Finland/26M7124/2020
 C241T C3037T C6568T C14408T A23403G C23575T G23587C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481623
 2020-03-26 2020-07-03
 Finland hCoV-19/Finland/26M7974/2020
 C241T C3037T C14408T C15324T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_482306
 2020-03-26 2020-07-03
 United States hCoV-19/USA/OR-PROV-020/2020
 C8782T C15240T C17747T A17858G C18060T C20178T G20670A C21774T T28144C

EPI_ISL_482317
 2020-03-26 2020-07-03
 United States hCoV-19/USA/OR-PROV-035/2020
 A2550G G11083T C14805T G26144T

EPI_ISL_482318
 2020-03-26 2020-07-03
 United States hCoV-19/USA/OR-PROV-036/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_482319
 2020-03-26 2020-07-03
 United States hCoV-19/USA/OR-PROV-037/2020
 A4236G G11083T C14805T T25655C G26144T

EPI_ISL_482457
 2020-03-26 2020-07-03
 United States hCoV-19/USA/OR-PROV-222/2020
 A4236G G11083T C14805T T25655C G26144T

EPI_ISL_483071
 2020-03-26 2020-07-07
 Australia hCoV-19/Australia/SAP202/2020
 ATT1- C241T G1319A C3037T C8389T C14408T C21707T A23403G G25563T

EPI_ISL_483082
 2020-03-26 2020-07-07
 Australia hCoV-19/Australia/SAP254/2020
 ATTAAAGGTT1- C36T C4540T C8782T T9477A C10189A C14805T G25979T T28144C C28311T C28657T C28863T

EPI_ISL_483099
 2020-03-26 2020-07-07
 Australia hCoV-19/Australia/SAP319/2020
 ATTAAAGGT1- C173T C241T C3037T C6997T C14408T C14889T A23403G T25473C GGG28881AAC

EPI_ISL_483158
 2020-03-26 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0466-IPL/2020
 ATT1- C241T C3037T C4582T C11102T C14408T A20268G A23403G

EPI_ISL_483308
 2020-03-26 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0697-SAN/2020
 ATTAAAGG1- C241T C1059T C1887T C3037T C14408T G23282T A23403G G25563T

EPI_ISL_483613
 2020-03-26 2020-07-08
 Singapore hCoV-19/Singapore/590/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T C7008T T12317G C14408T C16848T A23403G GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_483709
 2020-03-26 2020-07-08
 Israel hCoV-19/Israel/n14279/2020
 C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_484053
 2020-03-26 2020-07-08
 United Kingdom hCoV-19/England/GSTT-265DA46/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1150T C3037T C14408T A22481T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485937
 2020-03-26 2020-07-10
 United States hCoV-19/USA/CT-UW-3119/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- AAC34TTT C241T C3037T C14408T C18877T A22503T A23403G G25563T C26313T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_485941
 2020-03-26 2020-07-10
 United States hCoV-19/USA/CT-UW-3126/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T C3037T C4226T C4965T C12194T C14408T A23403G GGG28881AAC AA29902-

EPI_ISL_486058
 2020-03-26 2020-07-10
 United States hCoV-19/USA/WA-UW-2943/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C36T C241T C1059T C3037T C14408T A23403G G25563T G29553A AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_486062
 2020-03-26 2020-07-10
 United States hCoV-19/USA/WA-UW-2963/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C36T C241T C1059T C3037T C14408T A23403G G25563T G29553A AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_486063
 2020-03-26 2020-07-10
 United States hCoV-19/USA/WA-UW-2964/2020
 A4D C36T C241T C1059T C3037T C14408T A23403G G25563T G29553A AAA29901-

EPI_ISL_486065
 2020-03-26 2020-07-10
 United States hCoV-19/USA/WA-UW-2976/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- A35W C241T C1059T C3037T C14408T A23403G G25563T G29553A TG29867AA C29870A

EPI_ISL_486080
 2020-03-26 2020-07-10
 United States hCoV-19/USA/WA-UW-3024/2020
 ATTAAAGGTTTATACCTTC1- C36T C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_486081
 2020-03-26 2020-07-10
 United States hCoV-19/USA/WA-UW-3026/2020
 ATTAAAGGTTTAT1- A14T CCCAGGTAACAAACCAA19- C36T C241T C1059T C3037T C14408T A23403G G25563T G29553A GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_486082
 2020-03-26 2020-07-10
 United States hCoV-19/USA/WA-UW-3030/2020
 ATTAAAG1- C241T AAGTCATTT686- C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_486287
 2020-03-26 2020-07-10
 United States hCoV-19/USA/CA-CZB-2043/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C320S C959A T17907C A18577C A23122V T25902W T25908W G25913S

EPI_ISL_486831
 2020-03-26 2020-07-10
 United States hCoV-19/USA/OR-PROV-034/2020
 C241T C3037T C14408T G17193A C18877T A23403G G25563T T28251CTG CA28253TC

EPI_ISL_487652
 2020-03-26 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2692/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G26754A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487695
 2020-03-26 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5638/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- -11075TTT G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487940
 2020-03-26 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2689/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487969
 2020-03-26 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5658/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488250
 2020-03-26 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F84E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- A1904G C8090T C10789T C11008T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488481
 2020-03-26 2020-07-14
 United Kingdom hCoV-19/England/NORT-282954/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T TTA516- C1593T C3037T C7124T C14408T A23403G T25202K G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488511
 2020-03-26 2020-07-14
 United Kingdom hCoV-19/England/NORT-284CB3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T T25202K G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488512
 2020-03-26 2020-07-14
 United Kingdom hCoV-19/England/NORT-284CFF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C203T G11083T C14805T G16206T T25202K G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488525
 2020-03-26 2020-07-14
 United Kingdom hCoV-19/England/NORT-284B2F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6312A C14408T C16329T A20268G A23403G T25202K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488528
 2020-03-26 2020-07-14
 United Kingdom hCoV-19/England/NORT-282277/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1912A C3037T C10641T C10969T C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488538
 2020-03-26 2020-07-14
 United Kingdom hCoV-19/England/NORT-284E08/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C2091T G7393T A10323G G11083T C14805T T17247C T25202K G26144T C28377T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488543
 2020-03-26 2020-07-14
 United Kingdom hCoV-19/England/NORT-282417/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G C9223T G11083T C14805T T17247C T25202K G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488579
 2020-03-26 2020-07-14
 United Kingdom hCoV-19/England/NORT-2821B6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4276T C14408T A23403G T25202K G27996T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488594
 2020-03-26 2020-07-14
 United Kingdom hCoV-19/England/NORT-2829EB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T A23403G C23731T T25202K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488602
 2020-03-26 2020-07-14
 United Kingdom hCoV-19/England/NORT-284A40/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17747T A17858G C18060T T25202K T27384C T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488609
 2020-03-26 2020-07-14
 United Kingdom hCoV-19/England/NORT-28256F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488620
 2020-03-26 2020-07-14
 United Kingdom hCoV-19/England/NORT-282550/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G G5612A C9223T G11083T C14805T C14925T T17247C A17799G C19170T T25202K G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488670
 2020-03-26 2020-07-14
 United Kingdom hCoV-19/England/NORT-28258D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G T25202K C26447T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488683
 2020-03-26 2020-07-14
 United Kingdom hCoV-19/England/NORT-2824BD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A C10507T T25202K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488716
 2020-03-26 2020-07-14
 United Kingdom hCoV-19/England/NORT-28257E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G T25202K C26456Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488900
 2020-03-26 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2697/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1274T ATG1605- C5826T C12710T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488906
 2020-03-26 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2687/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T17126C A20268G G21372T A23403G G24197A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489006
 2020-03-26 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2691/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C7423T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489054
 2020-03-26 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2694/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16289T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489408
 2020-03-26 2020-07-14
 United Kingdom hCoV-19/Scotland/GCVR-171AFC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2086A C3037T C14408T C18744T A20268G A23403G G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489625
 2020-03-26 2020-07-14
 United Kingdom hCoV-19/Scotland/GCVR-17077E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C664T C3037T C14408T T17126C A20268G A23403G G24197A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489709
 2020-03-26 2020-07-14
 Czech Republic hCoV-19/Czech Republic/NRL_5513/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G12849R C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_490982
 2020-03-26 2020-07-15
 United States hCoV-19/USA/CT-UW-3417/2020
 ATTAAAGGTTTATACCTTCCCA1- AAC34TTT C679T A8031G C8782T C17747T A17858G C18060T A24694T T28144C C29870A -29904AAAAAAAAAA

EPI_ISL_490983
 2020-03-26 2020-07-15
 United States hCoV-19/USA/CT-UW-3423/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- AAC34TTT C241T C1059T C3037T C10851T C14408T G16975T A23403G G25563T TG29867AA C29870A -29904AAAAAAAAAAAAAAAA

EPI_ISL_490985
 2020-03-26 2020-07-15
 United States hCoV-19/USA/CT-UW-3450/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- C36T C241T C1059T C1917T C3037T C5512T C14408T A23403G G25563T -29904AAAAAAAAAAAA

EPI_ISL_490986
 2020-03-26 2020-07-15
 United States hCoV-19/USA/CT-UW-3465/2020
 ATTAAAGGTT1- AAC34TTT C241T C1059T C3037T C14408T A23403G G25563T A29903-

EPI_ISL_490987
 2020-03-26 2020-07-15
 United States hCoV-19/USA/CT-UW-3470/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- AAC34TTT C241T C1059T C3037T C14408T A23403G G25563T TG29867AA C29870A -29904AAAAAAAAAAAAAAA

EPI_ISL_490989
 2020-03-26 2020-07-15
 United States hCoV-19/USA/ID-UW-3172/2020
 TAAAGGTTTATA3- CCCAGGTAACAAACCAA19- C36T C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T -29904AAAAAAAAAAAAA

EPI_ISL_490990
 2020-03-26 2020-07-15
 United States hCoV-19/USA/ID-UW-3183/2020
 ATTAAAGGTTT1- A31T AC35TT C241T C1059T C3037T C14408T A16387T A23403G G25563T A26055G C28519T -29904AAAAAAAAAAAAAA

EPI_ISL_490991
 2020-03-26 2020-07-15
 United States hCoV-19/USA/ID-UW-3184/2020
 ATTA1- C241T T833C C1059T C3037T C14408T A23403G C23679T G25563T C27964T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_490992
 2020-03-26 2020-07-15
 United States hCoV-19/USA/ID-UW-3196/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- C36T C241T C3037T C14408T A23403G G29862A G29864A TG29867AA C29870A

EPI_ISL_490993
 2020-03-26 2020-07-15
 United States hCoV-19/USA/ID-UW-3204/2020
 ATTAAA1- C36T C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T GG29861AA G29864A TG29867AA C29870A -29904AAAAAAAAAAAAAAAAAA

EPI_ISL_491003
 2020-03-26 2020-07-15
 United States hCoV-19/USA/UN-UW-3202/2020
 ATTAAAGGTTTATACCTTCC1- C21M A26- C28Y AC35TT C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_491016
 2020-03-26 2020-07-15
 United States hCoV-19/USA/WA-UW-3336/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- C36T C8782T C17747T A17858G C18060T T28144C C29870H AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_491017
 2020-03-26 2020-07-15
 United States hCoV-19/USA/WA-UW-3340/2020
 ATTAAAGGT1- A31T C36T C241T C1059T C3037T C14408T A23403G G25563T G29553A AA29902-

EPI_ISL_491018
 2020-03-26 2020-07-15
 United States hCoV-19/USA/WA-UW-3356/2020
 AT1- A4T C36T C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_491019
 2020-03-26 2020-07-15
 United States hCoV-19/USA/WA-UW-3365/2020
 ATTAAA1- C36T C8782T C17747T A17858G C18060T C21575T G22988A T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_491022
 2020-03-26 2020-07-15
 United States hCoV-19/USA/WA-UW-3413/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C8782T G11083T C17747T A17858G C18060T T28144C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_491030
 2020-03-26 2020-07-15
 United States hCoV-19/USA/WA-UW-3515/2020
 ATTAAAGGT1- A31T AAC34TTT C8782T C12025T C17747T A17858G C18060T T28144C G28703T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_491031
 2020-03-26 2020-07-15
 United States hCoV-19/USA/WA-UW-3521/2020
 ATTAAAGGTTT1- C36T G6220A C8782T C17747T A17858G C18060T T28144C A28920G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_491032
 2020-03-26 2020-07-15
 United States hCoV-19/USA/WA-UW-3529/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C36T C8782T C17747T A17858G C18060T T27384C T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_491103
 2020-03-26 2020-07-15
 United States hCoV-19/USA/SC-DHEC-0050/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- T490A C3177T C6040T C8782T G12478A T18736C C24034T T26729C G28077C T28144C C28896G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_491116
 2020-03-26 2020-07-16
 Oman hCoV-19/Oman/RESP-20-6020/2020
 ATTAAAGGTT1- C241T C3037T C4246T G10265A C14408T C16293T A23403G T23482C GGG28881AAC TAATAGCTTCTTAGGAG29848- GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_491914 MT776408
 2020-03-26 2020-07-17
 United States SARS-CoV-2/human/USA/VA_NIDDL_2715/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C17639T A20268G A23403G A28222G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491915 MT776409
 2020-03-26 2020-07-17
 United States SARS-CoV-2/human/USA/VA_NIDDL_2716/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C17639T A20268G A23403G A28222G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492850
 2020-03-26 2020-07-20
 United Kingdom hCoV-19/England/LOND-124C3DD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G7070K C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492882
 2020-03-26 2020-07-20
 United Kingdom hCoV-19/England/LOND-124C30A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C2973T A7066R G11083T G13627T C14805T C15540T G26144T A28338G C29167T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493425
 2020-03-26 2020-07-21
 Singapore hCoV-19/Singapore/665/2020
 C6310A C6312A G11083T C13730T C19524T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_494609
 2020-03-26 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1448/2020
 ATT1- C241T C1059T C3037T C3365T C14408T A23403G C25386T G25563T G25757A

EPI_ISL_495013
 2020-03-26 2020-07-22
 Canada hCoV-19/Canada/LTRI-25/2020
 ATTAAAGGTTTAT1- C241T C2416T C2919T C3037T A5302G C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495399 MT791854
 2020-03-26 2020-07-22
 United States SARS-CoV-2/human/USA/FL-BPHL-0493/2020
 ATTAAA1- A1515G C9223T G11083T A11305G C14805T T17247C A21625G G26144T C29421T ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_495400 MT791855
 2020-03-26 2020-07-22
 United States SARS-CoV-2/human/USA/FL-BPHL-0494/2020
 AT1- C241T C3037T C14408T A23305C A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_495402 MT791857
 2020-03-26 2020-07-22
 United States SARS-CoV-2/human/USA/FL-BPHL-0496/2020
 ATT1- C241T C3037T C14408T C19170T G19509A A23403G GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_495403 MT791858
 2020-03-26 2020-07-22
 United States SARS-CoV-2/human/USA/FL-BPHL-0497/2020
 AT1- G11083T G13627T C14805T C15540T G15906T C22450G G26144T C26735T A28338G TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_495624
 2020-03-26 2020-07-23
 United States hCoV-19/USA/MN-MDH-1325/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C1059T C3037T C14408T A23403G G25563T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_495628
 2020-03-26 2020-07-23
 United States hCoV-19/USA/MN-MDH-1329/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T C14408T T19527C A23403G G25563T C27964T C28099T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496371
 2020-03-26 2020-07-24
 Mexico hCoV-19/Mexico/ALSR-1710/2020
 A1- C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_496928
 2020-03-26 2020-07-24
 United States hCoV-19/USA/MN-MDH-1342/2020
 ATTAAAGGTTTATACCT1- C241T C1059T C3037T C3096T C14408T A23403G G25563T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_496929
 2020-03-26 2020-07-24
 United States hCoV-19/USA/MN-MDH-1343/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C3037T C14408T A20268G A23403G G27750T G29734C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_496930
 2020-03-26 2020-07-24
 United States hCoV-19/USA/MN-MDH-1344/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T T19527C A23403G G25563T C27964T C28099T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_498158
 2020-03-26 2020-07-27
 Colombia hCoV-19/Colombia/88871/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_500425
 2020-03-26 2020-07-28
 Spain hCoV-19/Spain/COV005993/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C1059T G2879A C3037T T13006C C14408T C17004T A23403G G25563T C25688T GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_500501
 2020-03-26 2020-07-29
 United States hCoV-19/USA/CT-UW-3422/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T C3037T C8139T C14408T A23403G G25563T G26779T G29864A TG29867AA C29870A -29904AAAAAAAAAAAAAAAA

EPI_ISL_501188
 2020-03-26 2020-07-31
 Malaysia hCoV-19/Malaysia/2063/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C2508A C6310A C6312A G11083T C13730T C19524T C23929T C28311T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_501189
 2020-03-26 2020-07-31
 Malaysia hCoV-19/Malaysia/2065/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C6312A T7621C G11083T C13730T C23929T C25549T C28311T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_501190
 2020-03-26 2020-07-31
 Malaysia hCoV-19/Malaysia/2079/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C6312A T7621C G11083T C13730T C23929T C25549T C28311T

EPI_ISL_501591
 2020-03-26 2020-07-31
 United Kingdom hCoV-19/England/BRIS-13106F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C17822T C20762T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501624
 2020-03-26 2020-07-31
 United Kingdom hCoV-19/England/EKHU-260EF81/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G1550R C3037T G12674R G13828S C14408T G20632K A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501632
 2020-03-26 2020-07-31
 United Kingdom hCoV-19/Scotland/EDB2695/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- AAGTCATTT686- C988T G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_506976
 2020-03-26 2020-08-02
 South Korea hCoV-19/Korea/KCDC2182/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T T13686C C14408T A23403G G25563T C26124T

EPI_ISL_506977
 2020-03-26 2020-08-02
 South Korea hCoV-19/Korea/KCDC2183/2020
 A1- C241T C3037T C14408T C15371T A23403G GGG28881AAC

EPI_ISL_506979
 2020-03-26 2020-08-02
 South Korea hCoV-19/Korea/KCDC2185/2020
 AT1- A4T C241T C3037T C14408T G14500T A23403G GGG28881AAC

EPI_ISL_506980
 2020-03-26 2020-08-02
 South Korea hCoV-19/Korea/KCDC2186/2020
 ATTAAAGGT1- C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_507073
 2020-03-26 2020-08-03
 United Kingdom hCoV-19/England/LOND-124D266/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- A2480G C2558T C14805T C18252T G26144T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_507092
 2020-03-26 2020-08-03
 United Kingdom hCoV-19/England/LOND-124D3AF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C2558T C9430T G11083T C14805T C16995T G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_507126
 2020-03-26 2020-08-03
 United Kingdom hCoV-19/England/NORT-2A61E9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C884T C2091T G7393T A10323G G11083T C14805T T17247C G26144T C28377T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507152
 2020-03-26 2020-08-03
 United Kingdom hCoV-19/England/PORT-2D2506/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1457T A2480G C2558T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507153
 2020-03-26 2020-08-03
 United Kingdom hCoV-19/England/PORT-2D2515/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507155
 2020-03-26 2020-08-03
 United Kingdom hCoV-19/England/PORT-2D2533/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1457T A2480G C2558T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507902
 2020-03-26 2020-08-03
 United States hCoV-19/USA/MI-MDHHS-SC21126/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C1059T C2723T C3037T C11866T C14408T A23403G G25563T TGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29840-

EPI_ISL_507926
 2020-03-26 2020-08-03
 United States hCoV-19/USA/MI-MDHHS-SC21150/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C1059T C3037T C14408T A23403G G25563T C26447T TGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29840-

EPI_ISL_507975
 2020-03-26 2020-08-03
 United States hCoV-19/USA/MN-MDH-1388/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- A2480G C2558T G11083T C14805T C22523M G26144T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_507976
 2020-03-26 2020-08-03
 United States hCoV-19/USA/MN-MDH-1389/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C14408T G15380T A23403G G25563T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_508885
 2020-03-26 2020-08-04
 France hCoV-19/France/ARA14350/2020
 ATTAAA1- C241T T511C C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_508887
 2020-03-26 2020-08-04
 France hCoV-19/France/ARA14443/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T T10561C C14408T C15324T C16887T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_508888
 2020-03-26 2020-08-04
 France hCoV-19/France/ARA14456/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T C3037T T9156A C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_508889
 2020-03-26 2020-08-04
 France hCoV-19/France/ARA14570/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C14408T C14676T C14786T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_508890
 2020-03-26 2020-08-04
 France hCoV-19/France/ARA14623/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C539T C3037T C14408T C15324T A23403G C25433T G25855T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_508891
 2020-03-26 2020-08-04
 France hCoV-19/France/ARA14624/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T T511C C3037T C14408T A23403G G25563T T26182C AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_508892
 2020-03-26 2020-08-04
 France hCoV-19/France/ARA14627/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C2416T C3037T G8371T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_508893
 2020-03-26 2020-08-04
 France hCoV-19/France/ARA14735/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTT1- C106T C241T C3037T C14408T A23403G A26530G AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_508894
 2020-03-26 2020-08-04
 France hCoV-19/France/ARA14791/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGC1- C241T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_508895
 2020-03-26 2020-08-04
 France hCoV-19/France/ARA1492/2020
 ATTAAAG1- C241T C2416T C3037T C14408T A23403G C23997T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_509740 MT846444
 2020-03-26 2020-08-05
 United States SARS-CoV-2/human/USA/FL-BPHL-0682/2020
 ATTA1- T490A C3177T C8782T C15960T T18736C G19684T C24034T T26729C C27635T G28077C T28144C A29700G CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_509745 MT846449
 2020-03-26 2020-08-05
 United States SARS-CoV-2/human/USA/FL-BPHL-0687/2020
 ATTA1- C241T C3037T C14408T C18877T C21767T A23403G G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_509747 MT846451
 2020-03-26 2020-08-05
 United States SARS-CoV-2/human/USA/FL-BPHL-0689/2020
 ATTAAAGGTTT1- C241T C829T C1059T C3037T C14408T C16887T A23403G G25563T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_510925
 2020-03-26 2020-08-07
 Portugal hCoV-19/Portugal/PT0666/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C1059T C3037T C14408T A21213G A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511027
 2020-03-26 2020-08-07
 Portugal hCoV-19/Portugal/PT0768/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G2808A C3037T G11083T C14408T A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511154
 2020-03-26 2020-08-07
 Portugal hCoV-19/Portugal/PT0897/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C4113T C14408T A23403G GGG28881AAC A29396G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511336
 2020-03-26 2020-08-07
 Portugal hCoV-19/Portugal/PT1377/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C4090T G10265A C14408T A15972G A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511337
 2020-03-26 2020-08-07
 Portugal hCoV-19/Portugal/PT1378/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAA1- C241T C3037T C14408T C16293T C20759T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511338
 2020-03-26 2020-08-07
 Portugal hCoV-19/Portugal/PT1379/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C1059T C2706T C3037T C5348T C14178T C14408T G23282C A23403G A23416T G25563T C28528T C29119T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511339
 2020-03-26 2020-08-07
 Portugal hCoV-19/Portugal/PT1380/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C1059T C2706T C3037T G3242T C5348T C14178T C14408T G23282C A23403G T23406C A23416T G25563T C28528T C29119T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511364
 2020-03-26 2020-08-07
 Portugal hCoV-19/Portugal/PT1405/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C2925T C3037T C3140T C13059T C14408T G21641A A23403G G24077T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511373
 2020-03-26 2020-08-07
 Portugal hCoV-19/Portugal/PT1414/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T C15925T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511377
 2020-03-26 2020-08-07
 Portugal hCoV-19/Portugal/PT1418/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511379
 2020-03-26 2020-08-07
 Portugal hCoV-19/Portugal/PT1420/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G G28302A GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511391
 2020-03-26 2020-08-07
 Portugal hCoV-19/Portugal/PT1432/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511394
 2020-03-26 2020-08-07
 Portugal hCoV-19/Portugal/PT1435/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511396
 2020-03-26 2020-08-07
 Portugal hCoV-19/Portugal/PT1437/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C2416T C3037T G8371T C14408T A23403G G25563T G29703T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511405
 2020-03-26 2020-08-07
 Portugal hCoV-19/Portugal/PT1446/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C12153T C14408T T19521C A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511408
 2020-03-26 2020-08-07
 Portugal hCoV-19/Portugal/PT1449/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3140T C13059T C14408T G21641A A23403G G24077T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511410
 2020-03-26 2020-08-07
 Portugal hCoV-19/Portugal/PT1451/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T G19947T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511411
 2020-03-26 2020-08-07
 Portugal hCoV-19/Portugal/PT1452/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511413
 2020-03-26 2020-08-07
 Portugal hCoV-19/Portugal/PT1454/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C8836T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511418
 2020-03-26 2020-08-07
 Portugal hCoV-19/Portugal/PT1459/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3140T C13059T C14408T A23403G G24077T C29013T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511512
 2020-03-26 2020-08-08
 Portugal hCoV-19/Portugal/PT0963/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C4002T C6255T G10097A C13536T C14408T A23403G C23731T GGGGAACTT28881- TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511560
 2020-03-26 2020-08-08
 Portugal hCoV-19/Portugal/PT1013/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3140T C4090T C14408T A23403G G24077T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511563
 2020-03-26 2020-08-08
 Portugal hCoV-19/Portugal/PT1016/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC C29627T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511565
 2020-03-26 2020-08-08
 Portugal hCoV-19/Portugal/PT1018/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T T9667C C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511566
 2020-03-26 2020-08-08
 Portugal hCoV-19/Portugal/PT1019/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511576
 2020-03-26 2020-08-08
 Portugal hCoV-19/Portugal/PT1029/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511584
 2020-03-26 2020-08-08
 Portugal hCoV-19/Portugal/PT1037/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTA1- C241T C2416T C3037T C14408T C14786T C19884T G22093A A23403G G25563T T25577C TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511672
 2020-03-26 2020-08-08
 Portugal hCoV-19/Portugal/PT1125/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C7165A C9979T G11083T C12823T G26144T T26692C TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511733
 2020-03-26 2020-08-08
 Portugal hCoV-19/Portugal/PT1188/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G579T C3037T G5230T C14408T A20268G A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511752
 2020-03-26 2020-08-08
 Portugal hCoV-19/Portugal/PT1209/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G G24680T C25688T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511753
 2020-03-26 2020-08-08
 Portugal hCoV-19/Portugal/PT1210/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3140T C14408T T19749C G21761T A23403G G24077T T28705C C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511754
 2020-03-26 2020-08-08
 Portugal hCoV-19/Portugal/PT1211/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C4763A C14408T A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511755
 2020-03-26 2020-08-08
 Portugal hCoV-19/Portugal/PT1212/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3140T C14408T C21090T A23403G G24077T T28705C C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511756
 2020-03-26 2020-08-08
 Portugal hCoV-19/Portugal/PT1213/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3140T C14408T A23403G G24077T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511757
 2020-03-26 2020-08-08
 Portugal hCoV-19/Portugal/PT1214/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3140T C14408T A23403G G24077T T28705C C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_514313
 2020-03-26 2020-08-16
 Israel hCoV-19/Israel/CVL-n14279/2020
 AT1- C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_514648 MT892995
 2020-03-26 2020-08-17
 United States SARS-CoV-2/human/USA/MN-MDH-1429/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C8782T C17747T A17858G C18060T C21614T A24694T T28144C GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_514649 MT892996
 2020-03-26 2020-08-17
 United States SARS-CoV-2/human/USA/MN-MDH-1430/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A20268G G22899T A23403G GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_514663 MT893010
 2020-03-26 2020-08-17
 United States SARS-CoV-2/human/USA/MN-MDH-1444/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- G2809T C8782T C10755T C17747T A17858G C18060T A24694T C27610T T28144C G28812T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_514664 MT893011
 2020-03-26 2020-08-17
 United States SARS-CoV-2/human/USA/MN-MDH-1445/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- A2480G C2558T C10908T G11083T C14805T C25810T G26144T G28851C CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_514666 MT893013
 2020-03-26 2020-08-17
 United States SARS-CoV-2/human/USA/MN-MDH-1447/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- A2480G C2558T C10908T G11083T C14805T G26144T G28541A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_514667 MT893014
 2020-03-26 2020-08-17
 United States SARS-CoV-2/human/USA/MN-MDH-1448/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- A2480G C2558T C10908T G11083T C14805T G26144T G28851C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_514668 MT893015
 2020-03-26 2020-08-17
 United States SARS-CoV-2/human/USA/MN-MDH-1449/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C14408T C21707T A23403G A26530G CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_514669 MT893016
 2020-03-26 2020-08-17
 United States SARS-CoV-2/human/USA/MN-MDH-1450/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T G20752T A23403G C24138T G25563T T28930C AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_514670 MT893017
 2020-03-26 2020-08-17
 United States SARS-CoV-2/human/USA/MN-MDH-1451/2020
 ATTAAAGGTTT1- C241T G1043A C1997T C3037T G5008T C14408T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_514671 MT893018
 2020-03-26 2020-08-17
 United States SARS-CoV-2/human/USA/MN-MDH-1452/2020
 ATT1- C5142T C8782T C17747T A17858G C18060T T28144C AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_514672 MT893019
 2020-03-26 2020-08-17
 United States SARS-CoV-2/human/USA/MN-MDH-1453/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T C1059T C3037T C6310T C14408T A23403G G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_515269 MT897466
 2020-03-26 2020-08-18
 United States SARS-CoV-2/human/USA/MN-MDH-1460/2020
 ATTAAA1- C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_515279
 2020-03-26 2020-08-18
 United States hCoV-19/USA/WA-UW-4608/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGT1- C241T C1059T C3037T C14408T A23403G G25563T G29553A GCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29742-

EPI_ISL_515280
 2020-03-26 2020-08-18
 United States hCoV-19/USA/WA-UW-4614/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGT1- C8782T C17747T A17858G C18060T T28144C GCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29742-

EPI_ISL_515281
 2020-03-26 2020-08-18
 United States hCoV-19/USA/WA-UW-4615/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGT1- C241T C1059T C3037T C14408T A23403G G25563T GCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29742-

EPI_ISL_515282
 2020-03-26 2020-08-18
 United States hCoV-19/USA/WA-UW-4616/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGT1- C241T C379A C1059T C3037T C7420T C14408T A23403G G25563T GCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29742-

EPI_ISL_515334
 2020-03-26 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0052/2020
 AT1- C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_515901
 2020-03-26 2020-08-20
 United States hCoV-19/USA/CA-CDPH008/2020
 ATT1- C2141Y G2840R C8782T C17747Y A17858G C18060Y A22296G A26045G T28144C AAAAAAAAAAAAAAAAAAA29885-

EPI_ISL_516316
 2020-03-26 2020-08-20
 United States hCoV-19/USA/MI-MDHHS-SC21589/2020
 ATTAAAGGTTTA1- C241T C1059T C3037T A5011M C9223T C13431T C14408T A23403G G25563T TGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29840-

EPI_ISL_516321
 2020-03-26 2020-08-20
 United States hCoV-19/USA/MI-MDHHS-SC21594/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T T7734Y C14408T A23403G G25563T TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_516322
 2020-03-26 2020-08-20
 United States hCoV-19/USA/MI-MDHHS-SC21595/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C2146Y C2862T C3037T A5011M C14408T T19181C A23403G G25563T G27478K AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_516324
 2020-03-26 2020-08-20
 United States hCoV-19/USA/MI-MDHHS-SC21597/2020
 ATTAAAGGTT1- C241T C1059T C3037T C14408T A23403G G25563T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_517144
 2020-03-26 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A82F5/2020
 ATTAA1- ATG1605- A10982G C29870A

EPI_ISL_517151
 2020-03-26 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A837A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- ATG1605- A10982G C29870A

EPI_ISL_517159
 2020-03-26 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A83F2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14408T A23403G C25350T G26199R C29870A

EPI_ISL_517171
 2020-03-26 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A84C2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G C25350Y C29870A

EPI_ISL_517172
 2020-03-26 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A84D1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G1319R G11083T C14805T T17247C G26144T C29870A

EPI_ISL_517175
 2020-03-26 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A851A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G13564T C14408T A23403G

EPI_ISL_517176
 2020-03-26 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A8529/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G10097A C14408T C14724T A23403G C23731T G28580T GGG28881AAC C29870A

EPI_ISL_517177
 2020-03-26 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A8538/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G10097A C14408T A23403G C23731T GGG28881AAC

EPI_ISL_517178
 2020-03-26 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A8547/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G G27676C GGG28881AAC C29870A

EPI_ISL_517182
 2020-03-26 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A8583/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C541T C1059T C3037T C14408T T23284C A23403G G25563T G29757T

EPI_ISL_517185
 2020-03-26 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A85B0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T T17055C A20268G A23403G

EPI_ISL_517188
 2020-03-26 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A85ED/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T C15237Y C21711T A23403G GGG28881AAC C29870A

EPI_ISL_517189
 2020-03-26 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A8608/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C620T C3037T G10097A C14408T T22516Y A23403G C23731T G27651K GGG28881AAC

EPI_ISL_517190
 2020-03-26 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A8617/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C8814T G11083T A19476G G26144T

EPI_ISL_517192
 2020-03-26 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A8635/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_517193
 2020-03-26 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A8644/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_517209
 2020-03-26 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A878D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_517210
 2020-03-26 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A879C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_517218
 2020-03-26 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A8820/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC C29870A

EPI_ISL_517219
 2020-03-26 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A883F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G10097A T13216G C14408T A23403G C23731T C28087Y GGG28881AAC

EPI_ISL_517224
 2020-03-26 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A888A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G10097A T13216G C14408T A23403G C23731T C25378Y GGG28881AAC C29870A

EPI_ISL_517226
 2020-03-26 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A88A8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_517227
 2020-03-26 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A88B7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G13564T C14408T A23403G C29870A

EPI_ISL_517232
 2020-03-26 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A8F0D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C10319Y C14408T A23403G GGG28881AAC C29870A

EPI_ISL_517234
 2020-03-26 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A8F2B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C12138T C14408T A23403G GGG28881AAC

EPI_ISL_517236
 2020-03-26 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A8F58/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C313T C3037T C3602T C14403T C14408T A23403G GGG28881AAC C29870A

EPI_ISL_517237
 2020-03-26 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A8F67/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T G21624T A23403G G24000T GGG28881AAC C29870A

EPI_ISL_517238
 2020-03-26 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A8F76/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T C18877T A23403G G24197T G25563T C26735T C29870A

EPI_ISL_517241
 2020-03-26 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A8FA3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A2480G C2558T T10480C G11083T C14805T T26130C G26144T C27559T C29870A

EPI_ISL_517246
 2020-03-26 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A8FFE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A2480G C2558T A3123G C11074Y G11083T C14805T G26144T

EPI_ISL_517250
 2020-03-26 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A9036/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_518862 MT920001
 2020-03-26 2020-08-25
 United States SARS-CoV-2/human/USA/MN-MDH-1468/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T G598T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_518865 MT920004
 2020-03-26 2020-08-25
 United States SARS-CoV-2/human/USA/MN-MDH-1471/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2416T C3037T C14408T A21231G A23403G G25563T G26233T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_520719
 2020-03-26 2020-08-25
 United Arab Emirates hCoV-19/United Arab Emirates/L920626247/2020
 C241T C3037T C7765T T11205G C14408T A20268G A23403G T28334C G29734C

EPI_ISL_521900 MT972128
 2020-03-26 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC1994/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T G285A C3037T C14408T A23403G

EPI_ISL_521901 MT972129
 2020-03-26 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC1995/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T T1211G C3037T C5301T C14408T A23403G G25563T C27964T

EPI_ISL_521902 MT972130
 2020-03-26 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC1996/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T T7438C C14408T A23403G A26864G C29353T

EPI_ISL_525632
 2020-03-26 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-30593-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T T1303C C3037T G10265A C14408T A23403G GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_525634
 2020-03-26 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-30826-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T G28646A AATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29849-

EPI_ISL_526810
 2020-03-26 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0590/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T G8201A C12115T C14408T A23403G G25563T G29868A C29870A

EPI_ISL_527016
 2020-03-26 2020-09-03
 Australia hCoV-19/Australia/NSW2435/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C3037T C14408T A23403G CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_529222
 2020-03-26 2020-09-10
 United Kingdom hCoV-19/England/BIRM-61E4F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G431A ATG1605- G4136T C20270T C22987T C26464T A29683T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529604
 2020-03-26 2020-09-10
 United Kingdom hCoV-19/England/BIRM-61CFA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529605
 2020-03-26 2020-09-10
 United Kingdom hCoV-19/England/BIRM-61D06/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C19170T G19509A A23403G G28077T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529606
 2020-03-26 2020-09-10
 United Kingdom hCoV-19/England/BIRM-61D15/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C19170T G19509A A23403G G28077T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529608
 2020-03-26 2020-09-10
 United Kingdom hCoV-19/England/BIRM-61D7F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T A23403G C23430T C23731T C27644T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529609
 2020-03-26 2020-09-10
 United Kingdom hCoV-19/England/BIRM-61D8E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G11083T C14805T G26144T C27513T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529610
 2020-03-26 2020-09-10
 United Kingdom hCoV-19/England/BIRM-61DE8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529612
 2020-03-26 2020-09-10
 United Kingdom hCoV-19/England/BIRM-61E21/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G11083T C14805T G25297A G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529613
 2020-03-26 2020-09-10
 United Kingdom hCoV-19/England/BIRM-61E8B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G8131T G10097A C14408T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529614
 2020-03-26 2020-09-10
 United Kingdom hCoV-19/England/BIRM-61E9A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16289T A23403G C23844T G25429T G28326T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529616
 2020-03-26 2020-09-10
 United Kingdom hCoV-19/England/BIRM-61ED6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530047
 2020-03-26 2020-09-10
 Spain hCoV-19/Spain/MD-LP43/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2013A C3037T G4006A C14408T A20268G A23403G G29734C ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_530243
 2020-03-26 2020-09-11
 Australia hCoV-19/Australia/QLD955/2020/P1
 C241T C3037T C6723T C14408T A23403G T26094C

EPI_ISL_530244
 2020-03-26 2020-09-11
 Australia hCoV-19/Australia/QLD965/2020/P1
 ATTA1- C241T T809C C3037T C14408T A23403G G25049T

EPI_ISL_530267
 2020-03-26 2020-09-11
 Australia hCoV-19/Australia/QLD987/2020/P1
 ATTA1- C241T C1059T C3037T C10851T C14408T C14724T C15763T A23403G G25563T C29870A

EPI_ISL_530272
 2020-03-26 2020-09-11
 Australia hCoV-19/Australia/QLD1012/2020/P1
 AT1- A2480G C2558T G11083T C14805T G26144T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_536212
 2020-03-26 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00238674/2020
 ATTAAAGGTTTATAC1- C241T C1059T C3037T C14408T A23403G G25563T C26885T C29364Y GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_536216
 2020-03-26 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00238725/2020
 C241T C3037T C14408T C15324T A23403G C25433T T27444C C27847T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_536218
 2020-03-26 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00238793/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C3037T C14408T A23403G G25217T G25563T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_536219
 2020-03-26 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00238797/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C14408T C15324T A23403G C25433T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_536220
 2020-03-26 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00238803/2020
 AT1- C241T C3037T C8293T C14408T T18488C A23403G T24739C A26530R GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_536223
 2020-03-26 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00238819/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C2416T C3037T C4755T C14408T C18486T A23403G G25563T C26753T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_536224
 2020-03-26 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00238862/2020
 ATTAAAG1- C241T C3037T C14408T C15324T A19352M A23403G C25433T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_536225
 2020-03-26 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00238888/2020
 ATTAAAGGTTTA1- C4540T C4686T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T G29266T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_536229
 2020-03-26 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00238978/2020
 AT1- C241T C1884Y C2416T C3037T C14408T C19554T A19818M A23403G G25563T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_536232
 2020-03-26 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00239077/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C3037T C11916T C14408T A16344G C18998T A23403G G25563T C27741T C29296T G29540A TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_536234
 2020-03-26 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00239134/2020
 ATTAAAGGTTT1- C241T C3037T C14408T C15324T A23403G C25433T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_536237
 2020-03-26 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00239194/2020
 A1- C241T C1568A C3037T C14408T A23403G G27708T C28915T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_536240
 2020-03-26 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00239249/2020
 ATTAAA1- C241T C3037T C14408T C15324T A23403G C25433T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_536241
 2020-03-26 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00239255/2020
 ATTA1- C241T C3037T C8293T C14408T T18488C A23403G T24739C A26530R TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_536242
 2020-03-26 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00239272/2020
 ATTA1- C241T C1059T C3037T C6031A C14408T C19901T A23403G G25563T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_536243
 2020-03-26 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00239296/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T C3176T C14408T T23042Y A23403G GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_536244
 2020-03-26 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00239298/2020
 ATTAAAG1- C241T C1059T C3037T C14408T A23403G G25563T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_536247
 2020-03-26 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00239396/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T G11083T C14408T A21137R A23403G G25217T G25563T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_536257
 2020-03-26 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00239865/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T C6968T C14408T C15324T G15463T A23403G C25433T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_537434
 2020-03-26 2020-09-16
 Spain hCoV-19/Spain/RI-CSIC-99005892/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G3476R C8172Y C14408T A20268G A23403G C28138Y G29734C AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_537453
 2020-03-26 2020-09-16
 Spain hCoV-19/Spain/RI-CSIC-99005915/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T C1059T C3037T T13006C C14408T G17302T A23403G G25563T C25688T TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_538326
 2020-03-26 2020-09-16
 Canada hCoV-19/Canada/ON-OICR-SLB2792/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_538458
 2020-03-26 2020-09-17
 Singapore hCoV-19/Singapore/926/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T A7161G C8782T T18736C G19684T C24034T A24652T T26729C C27635T G28077C T28144C A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538459
 2020-03-26 2020-09-17
 Singapore hCoV-19/Singapore/927/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G G29474T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538935
 2020-03-26 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9E58/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G942R C3037T C3602T C14408T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538941
 2020-03-26 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9D88/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538950
 2020-03-26 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9D97/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097R T13216K C14408T C18486Y A23403G C23731Y G25471K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538954
 2020-03-26 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9D79/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C11300T C14408T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538963
 2020-03-26 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9DA6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25471T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538975
 2020-03-26 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9E67/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T C14408T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539028
 2020-03-26 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A890D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539089
 2020-03-26 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8642/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G15438T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541001
 2020-03-26 2020-09-22
 South korea hCoV-19/South Korea/IHC3486/2020
 ATTAAAGGTTTATACC1- C241T C3037T C14408T T20394C A23403G GGG28881AAC AAAAAAAAAAAAAAAA29888-

EPI_ISL_541346
 2020-03-26 2020-09-22
 Brazil hCoV-19/Brazil/PR-5623/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T C27741T G29540A GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_541760
 2020-03-26 2020-09-23
 United Kingdom hCoV-19/England/LOND-1286E30/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313Y C3037T C13620Y C14408T A20268R A23403G G28086K GGG28881RRS G29734S CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547516
 2020-03-26 2020-09-24
 Netherlands hCoV-19/Netherlands/UT-RIVM-10055/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T13006C C14408T A23403G G25563T C25688T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_548129
 2020-03-26 2020-09-25
 New Zealand hCoV-19/New Zealand/CAN-ESR-20VR3180/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1319A C3037T C8389T C11195T C14408T C21707T A23403G G25563T A25616G CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_560591
 2020-03-26 2020-09-29
 France hCoV-19/France/HDF8231/2020
 ATTAAAGGTTT1- A26- C28T C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_565965
 2020-03-26 2020-09-30
 United States hCoV-19/USA/MI-MDHHS-SC21904/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C4423T C14408T A20763T G22225K C23191T A23403G TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_568686
 2020-03-26 2020-10-02
 Indonesia hCoV-19/Indonesia/JI-EIJK-10/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C26801T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

GWHAORE01000001
 2020-03-26 2020-09-11
 China SARS-CoV-2/human/CHN/Beijing-P2.2/2020
 C241T C313T C3037T C14408T T14950C A23403G GGG28881AAC

MT293178
 2020-03-26 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW413/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C241T C1059T C3037T C14408T A23403G G25563T T27895C C28289A T28340A G29553A AAAA29900-

MT459846
 2020-03-26 2020-05-11
 Greece SARS-CoV-2/human/GRC/51_36518/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C313T C3037T C14408T A23403G C24863T G25135T C27673T G28086T GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

MT459985
 2020-03-26 2020-05-12
 United States SARS-CoV-2/human/GUM/GU-NHG-01/2020
 C6312A T8855C C10582T G11083T C12933T C13730T C23929T C28311T

MT459990
 2020-03-26 2020-05-12
 United States SARS-CoV-2/human/USA/SC-NHRC-03/2020
 ATTAAAGGTTTAT1- C241T C1059T C3037T C14408T A23403G G25563T C29095T

MT509480
 2020-03-26 2020-05-22
 United States SARS-CoV-2/human/USA/MD-HP00085/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT509491
 2020-03-26 2020-05-22
 United States SARS-CoV-2/human/USA/MD-HP00028/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT627932
 2020-03-26 2020-06-16
 United States SARS-CoV-2/human/USA/WA-S599/2020
 AT1- C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

MT706151
 2020-03-26 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-30/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G20752T A23403G G25563T C28677T T28930C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706155
 2020-03-26 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-34/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T G16381A C16428T T17877C C20316T G25500T C26124T T28144C G28878A G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706196
 2020-03-26 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-75/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C11224T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706246
 2020-03-26 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-253/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706351
 2020-03-26 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-223/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706352
 2020-03-26 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-224/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C3736T C8655T G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706353
 2020-03-26 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-225/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706354
 2020-03-26 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-226/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T15354C C18877T C20628T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706355
 2020-03-26 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-227/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T2116A G11083T G14772T G23518A G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706356
 2020-03-26 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-228/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C7318A A14549G G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706357
 2020-03-26 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-229/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C19017T G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706358
 2020-03-26 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-230/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T15354C C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706359
 2020-03-26 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-231/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C15738T G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706362
 2020-03-26 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-234/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A16053G G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT764178
 2020-03-26 2020-07-15
 United States SARS-CoV-2/human/USA/COVID20-0050/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- T490A C3177T C6040T C8782T G12478A T18736C C24034T T26729C G28077C T28144C C28896G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

MT810558
 2020-03-26 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0425-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C8782T C17470T C26088T T28144C CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810564
 2020-03-26 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0432-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C379A C1059T C3037T G4657A C14408T G21578T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810582
 2020-03-26 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0466-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C4582T C11102T C14408T A20268G A23403G CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810784
 2020-03-26 2020-07-29
 Mexico SARS-CoV-2/human/MEX/SEARCH-1710-TIJ/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810827
 2020-03-26 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1448-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C3365T C14408T A23403G C25386T G25563T G25757A CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810958
 2020-03-26 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0252-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C12473T C14408T A23403G G25563T G28396A CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810961
 2020-03-26 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0256-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T A23403G T25536C G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811176
 2020-03-26 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0119-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T G1397A G8653T G11083T C14408T A23403G G25563T A25980C CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811177
 2020-03-26 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0120-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C3365T C14408T A23403G C25386T G25563T G25757A CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811321
 2020-03-26 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0697-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C1887T C3037T C14408T G23282T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

NMDC60013233
 2020-03-26 2020-06-01
 China hCoV-19/Guangzhou/ID037/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C1059T C3037T C6401T C14408T A23403G C23988T G25563T

NMDC60013238
 2020-03-26 2020-06-01
 China hCoV-19/Guangzhou/ID042/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C3037T C12923T C14408T A20268G A23403G T29265A

EPI_ISL_420024 MT322421
 2020-03-27 2020-04-08
 United States SARS-CoV-2/human/USA/VA-DCLS-0043/2020
 AT1- C241T C3037T C14408T G16858T G17278T C22120T A23403G C23575T G23587C GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_420025 MT322422
 2020-03-27 2020-04-08
 United States SARS-CoV-2/human/USA/VA-DCLS-0044/2020
 ATTAAA1- C241T C3037T C14408T G16858T G17278T C22120T A23403G C23575T G23587C

EPI_ISL_420026 MT322423
 2020-03-27 2020-04-08
 United States SARS-CoV-2/human/USA/VA-DCLS-0045/2020
 ATT1- C241T C3037T C14408T G16858T G17278T C22120T A23403G C23575T G23587C C29870A

EPI_ISL_420160
 2020-03-27 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C07E9/2020
 G431A ATG1605- C20270T G26314A A29683T

EPI_ISL_420178
 2020-03-27 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C04A6/2020
 C241T C3037T C14408T C18713T A23403G GGG28881AAC

EPI_ISL_420179
 2020-03-27 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C042E/2020
 C241T C3037T C14408T C21431T A23403G

EPI_ISL_420180
 2020-03-27 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C02CA/2020
 C241T C1469T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_420181
 2020-03-27 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C0321/2020
 C241T C3037T T7438C G10097A C14408T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_420184
 2020-03-27 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C03C7/2020
 G1440A C1911T G2891A

EPI_ISL_420185
 2020-03-27 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C038B/2020
 ATG1605- T4949C G6734A C8480T C16887T

EPI_ISL_420188
 2020-03-27 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C0400/2020
 C241T C3037T C14408T C18713T A23403G GGG28881AAC

EPI_ISL_420189
 2020-03-27 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C0497/2020
 A2480G C2558T G11083T C14805T G26144T G27703T

EPI_ISL_420190
 2020-03-27 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C03F4/2020
 C241T C3037T A11839G C14408T T19839C A23403G GGG28881AAC

EPI_ISL_420191
 2020-03-27 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C0260/2020
 A2480G C2558T G11083T G12067T C14805T C19536T G26144T

EPI_ISL_420192
 2020-03-27 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C02BB/2020
 C241T C3037T C14408T A23403G

EPI_ISL_420210
 2020-03-27 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C041F/2020
 C241T C3037T C8637T C14408T A23403G

EPI_ISL_420215
 2020-03-27 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C046A/2020
 C241T C3037T C4002T G10097A G11083T C13536T C14408T A23403G C23731T C27513T GGG28881AAC

EPI_ISL_420217
 2020-03-27 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C043D/2020
 C241T G680A C3037T C4002T C7286A G10097A C13536T C14408T A23403G C23731T C27513T GGG28881AAC

EPI_ISL_420718
 2020-03-27 2020-04-06
 United Kingdom hCoV-19/England/20139057204/2020
 A2480G C2558T G11083T C14805T C17690Y C18032Y T19203Y G26144T C28253Y

EPI_ISL_420719
 2020-03-27 2020-04-06
 United Kingdom hCoV-19/England/20139057404/2020
 C241T C3037T C14408T G15921K T20123Y A23403G GGG28881AAC

EPI_ISL_420724
 2020-03-27 2020-04-06
 United Kingdom hCoV-19/England/20139058304/2020
 C241T C2416T C3037T C14408T C14786T G20578T A23403G G25563T C28153T

EPI_ISL_420734
 2020-03-27 2020-04-06
 United Kingdom hCoV-19/England/20139060804/2020
 C241T G2164A C3037T C14408T A23403G GGG28881AAC

EPI_ISL_420743
 2020-03-27 2020-04-06
 United Kingdom hCoV-19/England/20139062804/2020
 G11083T C14805T T17247C C21638M G26144T G29477K C29625T

EPI_ISL_420755
 2020-03-27 2020-04-06
 United Kingdom hCoV-19/England/20140039304/2020
 C241T C3037T C6696T C8752T C14408T C17125A A20268G A23403G

EPI_ISL_420766
 2020-03-27 2020-04-06
 United Kingdom hCoV-19/England/20142060404/2020
 G11083T C14805T C23707T G26144T C28826T

EPI_ISL_421176
 2020-03-27 2020-04-07
 Spain hCoV-19/Spain/Madrid_H12_2006/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421177
 2020-03-27 2020-04-07
 Spain hCoV-19/Spain/Madrid_H12_2107/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11704T A12410G C14408T A20268G A23403G G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421178
 2020-03-27 2020-04-07
 Spain hCoV-19/Spain/Madrid_H12_2208/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2227T C3037T C14408T G16744A A20268G G21190A A23403G G26152A T26301G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421179
 2020-03-27 2020-04-07
 Spain hCoV-19/Spain/Madrid_H12_2309/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C14408T A20268G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421180
 2020-03-27 2020-04-07
 Spain hCoV-19/Spain/Madrid_H12_2410/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G A24367C C27998T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421796
 2020-03-27 2020-04-09
 United Kingdom hCoV-19/England/201380028/2020
 C241T C2416T C3037T G11528A C14408T C14786T G20578T A23403G T25485C G25563T

EPI_ISL_421798
 2020-03-27 2020-04-09
 United Kingdom hCoV-19/England/201380034/2020
 C241T C2416T C3037T C14408T C14786T G20578T A23403G C25460T G25563T

EPI_ISL_421802
 2020-03-27 2020-04-09
 United Kingdom hCoV-19/England/201380040/2020
 A2480G C2558T G3250K G11083T C14805T G26144T

EPI_ISL_421837
 2020-03-27 2020-04-09
 United Kingdom hCoV-19/England/20138082804/2020
 C241T G2164A C3037T C5869Y C8320T C14408T G16197T A23403G GGG28881AAC

EPI_ISL_421839
 2020-03-27 2020-04-09
 United Kingdom hCoV-19/England/20138083204/2020
 C241T T365Y C3037T C4456Y C10594Y C14408T A23403G A26530R G28739T

EPI_ISL_421865
 2020-03-27 2020-04-09
 United Kingdom hCoV-19/England/20139008704/2020
 A2480G C2558T C8078T C8917T G11083T C14805T G26144T

EPI_ISL_421866
 2020-03-27 2020-04-09
 United Kingdom hCoV-19/England/20139009004/2020
 C241T C3037T C14408T C16289T T17291Y G18534K C18698T A23403G G25429T C26195T

EPI_ISL_421867
 2020-03-27 2020-04-09
 United Kingdom hCoV-19/England/20139009204/2020
 A2480G C2558T A10828C G11083T C14805T G26144T

EPI_ISL_421882
 2020-03-27 2020-04-09
 United Kingdom hCoV-19/England/20139021604/2020
 C241T C3037T C14408T C16289T A23403G G25429T

EPI_ISL_421885
 2020-03-27 2020-04-09
 United Kingdom hCoV-19/England/20139022504/2020
 C241T C3037T G10523S C14408T C21034Y A23403G G25429T

EPI_ISL_421890
 2020-03-27 2020-04-09
 United Kingdom hCoV-19/England/20139024004/2020
 C241T C3037T C6681Y C14408T A23403G A27969R GGG28881AAC

EPI_ISL_421894
 2020-03-27 2020-04-09
 United Kingdom hCoV-19/England/20139024804/2020
 C241T C2416T C3037T C14408T C14786T A19338R G20578T A23403G T25485C G25563T

EPI_ISL_421915
 2020-03-27 2020-04-09
 United Kingdom hCoV-19/England/20139031504/2020
 A2480G C2558T A4015T G9111A G11083T C14805T G17671R G26144T

EPI_ISL_421916
 2020-03-27 2020-04-09
 United Kingdom hCoV-19/England/20139031804/2020
 A2480G C2558T T5218Y C7011T G7160C G11083T C14805T T22516Y C23533T G26144T

EPI_ISL_421918
 2020-03-27 2020-04-09
 United Kingdom hCoV-19/England/20139032404/2020
 A1515G G4510T C9223T A10912G G11083T C14805T T17247C G20931T G26144T

EPI_ISL_421921
 2020-03-27 2020-04-09
 United Kingdom hCoV-19/England/20139033404/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_422019
 2020-03-27 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-265E7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- A2480G C2558T C7165T G11083T C14805T A23702T G26144T

EPI_ISL_422020
 2020-03-27 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-2682A/2020
 A1- C241T C3037T C14408T C14741T A23403G

EPI_ISL_422021
 2020-03-27 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-2665D/2020
 ATTAAAGGTT1- G1440A C1722T G2891A G28851T

EPI_ISL_422025
 2020-03-27 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-263DE/2020
 AT1- C241T C3037T G11801A C14408T T19839C A23403G G25552T GGG28881AAC

EPI_ISL_422026
 2020-03-27 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-263FC/2020
 AT1- G1440A G2891A C9438T C25669T C25685T G28851T

EPI_ISL_422027
 2020-03-27 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-2672D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G

EPI_ISL_422028
 2020-03-27 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-2631A/2020
 G1440A G2891A C25669T A27198G G28851T

EPI_ISL_422032
 2020-03-27 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-2649F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_422033
 2020-03-27 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-2681B/2020
 A1- C241T C3037T C14408T C16289T A23403G G25429T

EPI_ISL_422037
 2020-03-27 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-2663F/2020
 C241T C3037T C14408T A23403G

EPI_ISL_422046
 2020-03-27 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-2666C/2020
 A1- C241T C3037T C14408T G19101T C19170T G19509A A23403G C25480T GGG28881AAC

EPI_ISL_422048
 2020-03-27 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-26918/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_422052
 2020-03-27 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-26884/2020
 ATTA1- G1440A G2891A C10956T A11399G G21753T A27669G

EPI_ISL_422070
 2020-03-27 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-26839/2020
 ATTAAAGGTTTATACCTTCC1- C241T C3037T C14408T C14741T A23403G

EPI_ISL_422074
 2020-03-27 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-26954/2020
 C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_422083
 2020-03-27 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-2624A/2020
 C241T C3037T C6990T C14408T A23403G C27476T

EPI_ISL_422098
 2020-03-27 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-26848/2020
 A1- C241T C3037T C5506T G14241T C14408T C19151T A23403G

EPI_ISL_422102
 2020-03-27 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-26444/2020
 AT1- C241T C3037T C14396T C14408T A23403G GGG28881AAC

EPI_ISL_422109
 2020-03-27 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-266F3/2020
 ATTA1- C241T C3037T C6990T C14408T A23403G

EPI_ISL_422112
 2020-03-27 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-26417/2020
 ATTA1- C241T C3037T C14408T A23403G

EPI_ISL_422119
 2020-03-27 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-26C5B/2020
 ATTAA1- C241T C3037T C14408T A17121W C21242T A23403G GGG28881AAC

EPI_ISL_422569 LR878053
 2020-03-27 2020-04-11
 Netherlands hCoV-19/Netherlands/Friesland_4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4649T C14408T C21627T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422756 LR877929
 2020-03-27 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_221/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G12550A C14408T A20268G C20740A A23403G G26501T G29734C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422762 LR877950
 2020-03-27 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_227/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422764 LR877957
 2020-03-27 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_229/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422765 LR877962
 2020-03-27 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_230/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T T17247C G26144T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422766 LR877953
 2020-03-27 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_231/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422767 LR877954
 2020-03-27 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_233/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- T4114G C8770T C28087T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422768 LR877961
 2020-03-27 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_234/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C2268T C27005T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422769 LR877951
 2020-03-27 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_235/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7765T C14408T C17690T C18877T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422771 LR877964
 2020-03-27 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_237/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A11438G C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422772 LR877883
 2020-03-27 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_238/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T T17247C C21846T C22624A G26144T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422774 LR877956
 2020-03-27 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_240/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C12781T C27005T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422902 LR877926
 2020-03-27 2020-04-11
 Netherlands hCoV-19/Netherlands/ZuidHolland_103/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T19839C A23403G G28628T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422948 LR877919
 2020-03-27 2020-04-11
 Netherlands hCoV-19/Netherlands/ZuidHolland_80/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422949 LR877922
 2020-03-27 2020-04-11
 Netherlands hCoV-19/Netherlands/ZuidHolland_81/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T T17247C G20006T G26144T C28253T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422950 LR877924
 2020-03-27 2020-04-11
 Netherlands hCoV-19/Netherlands/ZuidHolland_82/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G12550A C14408T A20268G C20740A A23403G G29734C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422951 LR877923
 2020-03-27 2020-04-11
 Netherlands hCoV-19/Netherlands/ZuidHolland_83/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T19839C A22784T A23403G G28628T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422952 LR877913
 2020-03-27 2020-04-11
 Netherlands hCoV-19/Netherlands/ZuidHolland_84/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G8561A C14408T C18788T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422954 LR877963
 2020-03-27 2020-04-11
 Netherlands hCoV-19/Netherlands/ZuidHolland_86/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T13006C C14408T T18630C A23403G G25563T C25688T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422955 LR877960
 2020-03-27 2020-04-11
 Netherlands hCoV-19/Netherlands/ZuidHolland_88/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10369T G12550A C14408T A20268G C20740A A23403G G26501T G29734C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422956 LR877968
 2020-03-27 2020-04-11
 Netherlands hCoV-19/Netherlands/ZuidHolland_89/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C8293A C11109T C14408T C19402T A23403G G25563T G26439T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_423328
 2020-03-27 2020-04-12
 United Kingdom hCoV-19/England/20138084904/2020
 C241T C3037T C11866Y C12525T C14408T G20056K A23403G GGG28881AAC

EPI_ISL_423346
 2020-03-27 2020-04-12
 United Kingdom hCoV-19/England/20139016704/2020
 C241T C3037T A10948G C14408T C16726T A20262G A23403G C27542T GGG28881AAC

EPI_ISL_423414
 2020-03-27 2020-04-12
 United Kingdom hCoV-19/England/20140071604/2020
 A1034R A2480G C2558T C6666Y G8422R G11083T C14805T G26144T

EPI_ISL_424557
 2020-03-27 2020-04-13
 Iceland hCoV-19/Iceland/537/2020
 A2480G C2558T G11083T C14805T G26144T C26781T

EPI_ISL_424558
 2020-03-27 2020-04-13
 Iceland hCoV-19/Iceland/538/2020
 C5142T G11083T C14805T T17247C G26144T

EPI_ISL_424559
 2020-03-27 2020-04-13
 Iceland hCoV-19/Iceland/539/2020
 C241T C3037T A10323G C14408T A20268G A23403G

EPI_ISL_424560
 2020-03-27 2020-04-13
 Iceland hCoV-19/Iceland/540/2020
 A7479G G11083T C14805T T17247C C25572T G26144T C28887T

EPI_ISL_424563
 2020-03-27 2020-04-13
 Iceland hCoV-19/Iceland/543/2020
 C241T C1059T C3037T C12880T C14408T A23403G G25563T

EPI_ISL_424564
 2020-03-27 2020-04-13
 Iceland hCoV-19/Iceland/544/2020
 C5142T G11083T C14805T T17247C C21855T G26144T

EPI_ISL_424571
 2020-03-27 2020-04-13
 Iceland hCoV-19/Iceland/551/2020
 C241T C3037T A10323G C14408T C16575T A20268G A23403G

EPI_ISL_424573
 2020-03-27 2020-04-13
 Iceland hCoV-19/Iceland/553/2020
 C241T C3037T A10323G C14408T A20268G A23403G

EPI_ISL_424574
 2020-03-27 2020-04-13
 Iceland hCoV-19/Iceland/554/2020
 C241T C3037T C14408T A23403G C25831T GGG28881AAC

EPI_ISL_424576
 2020-03-27 2020-04-13
 Iceland hCoV-19/Iceland/556/2020
 C241T C3037T A10323G C14408T A20268G A23403G

EPI_ISL_424577
 2020-03-27 2020-04-13
 Iceland hCoV-19/Iceland/557/2020
 ATG1605- C20270T G23608T A29683T G29736A

EPI_ISL_424578
 2020-03-27 2020-04-13
 Iceland hCoV-19/Iceland/558/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_424580
 2020-03-27 2020-04-13
 Iceland hCoV-19/Iceland/560/2020
 C241T C3037T C3253T C14408T A23403G C24054T A25958G C27046T G28812T GGG28881AAC

EPI_ISL_424582
 2020-03-27 2020-04-13
 Iceland hCoV-19/Iceland/562/2020
 C241T C3037T A10323G C12068G C14408T A20268G C21855T A23403G

EPI_ISL_424597
 2020-03-27 2020-04-13
 Iceland hCoV-19/Iceland/577/2020
 C241T C3037T A11839G T12015G C14408T G16377T T19839C A23403G G23856A GGG28881AAC

EPI_ISL_424598
 2020-03-27 2020-04-13
 Iceland hCoV-19/Iceland/578/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T

EPI_ISL_424599
 2020-03-27 2020-04-13
 Iceland hCoV-19/Iceland/579/2020
 C5142T G11083T C14805T T17247C G26144T

EPI_ISL_424601
 2020-03-27 2020-04-13
 Iceland hCoV-19/Iceland/581/2020
 C241T C3037T A10323G C14408T A20268G A23403G

EPI_ISL_424602
 2020-03-27 2020-04-13
 Iceland hCoV-19/Iceland/582/2020
 C241T C1779T C3037T A8072G C14408T A23403G T26294C GGG28881AAC

EPI_ISL_424603
 2020-03-27 2020-04-13
 Iceland hCoV-19/Iceland/583/2020
 C241T C3037T C14408T C19170T G19509A A23403G G28077T GGG28881AAC

EPI_ISL_424604
 2020-03-27 2020-04-13
 Iceland hCoV-19/Iceland/584/2020
 C241T C313T C3037T C11979T C14408T A23403G GGG28881AAC

EPI_ISL_424605
 2020-03-27 2020-04-13
 Iceland hCoV-19/Iceland/585/2020
 C241T C3037T A10323G C14408T A20268G A23403G

EPI_ISL_424612
 2020-03-27 2020-04-13
 Iceland hCoV-19/Iceland/592/2020
 G1440A G2891A A4140G

EPI_ISL_424613
 2020-03-27 2020-04-13
 Iceland hCoV-19/Iceland/593/2020
 C241T C3037T T9853C C14408T C14980T A23403G A26530G

EPI_ISL_424614
 2020-03-27 2020-04-13
 Iceland hCoV-19/Iceland/594/2020
 C241T C3037T C14408T C14980T A23403G A26530G

EPI_ISL_424615
 2020-03-27 2020-04-13
 Iceland hCoV-19/Iceland/595/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_425310
 2020-03-27 2020-04-14
 United Kingdom hCoV-19/England/CAMB-745AE/2020
 A187G C241T C3037T C14408T A23403G

EPI_ISL_425311
 2020-03-27 2020-04-14
 United Kingdom hCoV-19/England/CAMB-745BD/2020
 A187G C241T C3037T C14408T A23403G C24133T

EPI_ISL_425951
 2020-03-27 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB232/2020
 C241T C292T C3037T C14408T A20268G A23403G

EPI_ISL_425952
 2020-03-27 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB234/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_425954
 2020-03-27 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB248/2020
 C241T C3037T G5230T C14408T A20268G A23403G

EPI_ISL_425958
 2020-03-27 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB270/2020
 C241T C3037T T14079C C14408T A23403G GGG28881AAC

EPI_ISL_425962
 2020-03-27 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB278/2020
 C241T C3037T C12513T C14408T A23403G C25350T

EPI_ISL_425963
 2020-03-27 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB283/2020
 C241T C3037T C14408T A23403G C25433T

EPI_ISL_425964
 2020-03-27 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB287/2020
 C241T C3037T C3244T C14408T A23403G C25433T G27147T

EPI_ISL_425965
 2020-03-27 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB288/2020
 C241T C3037T C14408T A23403G C25433T

EPI_ISL_426064 MT345871
 2020-03-27 2020-04-14
 United States SARS-CoV-2/human/USA/ID-UW-4355/2020
 A1G C36T C241T T833C C1059T C3037T C6354T C14408T A23403G A24014G G25563T C27964T

EPI_ISL_426065 MT345872
 2020-03-27 2020-04-14
 United States SARS-CoV-2/human/USA/ID-UW-4357/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T G29862A G29864A TG29867AA C29870A

EPI_ISL_426068 MT345877
 2020-03-27 2020-04-14
 United States SARS-CoV-2/human/USA/ID-UW-4380/2020
 A31T C36T C241T C1059T C3037T C11289T C13170T CC14407TT A23403G G25563T

EPI_ISL_426073 MT345886
 2020-03-27 2020-04-14
 United States SARS-CoV-2/human/USA/ID-UW-4433/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- A31T C36T C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T C28093T C29520T G29864A TG29867AA C29870A

EPI_ISL_426298
 2020-03-27 2020-04-15
 United States hCoV-19/USA/NY-Wadsworth-31488-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426301
 2020-03-27 2020-04-15
 United States hCoV-19/USA/NY-Wadsworth-31302-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C6198T C14408T C18877T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426303
 2020-03-27 2020-04-15
 United States hCoV-19/USA/NY-Wadsworth-31364-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426312
 2020-03-27 2020-04-15
 United States hCoV-19/USA/NY-Wadsworth-30878-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426321
 2020-03-27 2020-04-15
 United States hCoV-19/USA/NY-Wadsworth-31617-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C4423T C5221T C14408T A23403G G25563T C26177T G29688T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426455 MT350237
 2020-03-27 2020-04-17
 United States SARS-CoV-2/human/USA/VA-DCLS-0047/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C3037T C14408T C14925T A23403G G25563T C29870A

EPI_ISL_426461 MT350243
 2020-03-27 2020-04-17
 United States SARS-CoV-2/human/USA/VA-DCLS-0053/2020
 ATTAAA1- C241T T1918C C3037T C14408T C18877T A23403G G25563T G28300T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_426534
 2020-03-27 2020-04-17
 United States hCoV-19/USA/AZ-TG271435/2020
 T490A A2565G C3177T C8782T C10954T C15960T T18736C G19684T C22802G A22811T C22986T C24034T T26729C C27635T G28077C T28144C A29700G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426551
 2020-03-27 2020-04-17
 United States hCoV-19/USA/AZ-TG271896/2020
 C241T C3037T C9534A C14408T C18877T A23403G G25563T G29742A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426552
 2020-03-27 2020-04-17
 United States hCoV-19/USA/AZ-TG271898/2020
 C241T C3037T C9534A C14408T C18877T A23403G G25563T G29742A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426553
 2020-03-27 2020-04-17
 United States hCoV-19/USA/AZ-TG271900/2020
 C241T C3037T C9534A C14408T C18877T A23403G G25563T G29742A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426861 MT451415
 2020-03-27 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC606/2020
 C241T C3037T C14408T C18877T A23403G G25563T

EPI_ISL_426865 MT451419
 2020-03-27 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC611/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_426883 MT517420
 2020-03-27 2020-04-17
 Czech Republic SARS-CoV-2/human/CZE/IAB_1/2020
 ATTAAAGGTTTATAC1- C241T C1059T C3037T C3177A C6843T G11083T C14408T C19961T A23403G G25563T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_426884 MT517421
 2020-03-27 2020-04-17
 Czech Republic SARS-CoV-2/human/CZE/IAB_4/2020
 ATTAAAGGTT1- C241T C541T C835T C1059T C3037T G11083T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_426885 MT517422
 2020-03-27 2020-04-17
 Czech Republic SARS-CoV-2/human/CZE/IAB_8/2020
 ATTAAAGGTT1- C241T C3037T G3955T C14408T A23403G G25534T C27005T C27046T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_426892 MT517429
 2020-03-27 2020-04-17
 Czech Republic SARS-CoV-2/human/CZE/IAB_17/2020
 ATTAAAG1- C241T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_426893 MT517430
 2020-03-27 2020-04-17
 Czech Republic SARS-CoV-2/human/CZE/IAB_18/2020
 ATTAAAGGTTTATAC1- C241T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_426894 MT517431
 2020-03-27 2020-04-17
 Czech Republic SARS-CoV-2/human/CZE/IAB_20/2020
 ATTAAAGG1- G160A C241T C3037T C6026T T7438C C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_426895 MT517432
 2020-03-27 2020-04-17
 Czech Republic SARS-CoV-2/human/CZE/IAB_21/2020
 ATTAAAGGTT1- C241T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_426899 MT641656
 2020-03-27 2020-04-17
 Australia SARS-CoV-2/human/AUS/NT11/2020
 C241T C3037T C4560T C14408T A23403G C25782T T27299C GGG28881AAC T29148C C29670T

EPI_ISL_426957 MT451461
 2020-03-27 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC661/2020
 G11083T C14805T T17247C G26144T

EPI_ISL_426958 MT451462
 2020-03-27 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC662/2020
 C6695A C8782T C17747T A17858G C18060T G23126T A24694T T28144C G29000T

EPI_ISL_426960 MT451463
 2020-03-27 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC664/2020
 C241T C3037T C6573T C14408T A23403G C25528T GGG28881AAC

EPI_ISL_426961 MT451464
 2020-03-27 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC665/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27812T

EPI_ISL_426962 MT451465
 2020-03-27 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC666/2020
 C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_426963 MT451466
 2020-03-27 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC667/2020
 G1440A G2891A C4668T G29260A

EPI_ISL_426964 MT451467
 2020-03-27 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC668/2020
 T10600C G11083T C14805T T17247C G22708T G26144T

EPI_ISL_426968 MT451470
 2020-03-27 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC672/2020
 C241T C3037T C5544T C11941T C14408T A23403G G27281T GGG28881AAC

EPI_ISL_426971 MT451473
 2020-03-27 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC676/2020
 C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T

EPI_ISL_426972 MT451474
 2020-03-27 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC677/2020
 C241T C1059T C3037T C14408T A23403G G25563T G25593C C29296T

EPI_ISL_426973 MT451475
 2020-03-27 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC678/2020
 C6312A G11083T C13730T C23929T C28311T

EPI_ISL_426975 MT451476
 2020-03-27 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC680/2020
 C1076T G1397A -11075TTT G11083T T28688C A28955T G29742T

EPI_ISL_426976 MT451477
 2020-03-27 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC681/2020
 C1076T G1397A -11075TTT G11083T T28688C A28955T G29742T

EPI_ISL_427002 MT451499
 2020-03-27 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC718/2020
 C241T C3037T T7438C C12528T C14408T A23403G C29353T

EPI_ISL_427178 MT358678
 2020-03-27 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-3815/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C8782T A11742T C17747T A17858G C18060T T28144C AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_427191 MT358691
 2020-03-27 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-3843/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C36T C241T C1059T C3037T C14408T A23403G G25563T G29553A AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_427201 MT358702
 2020-03-27 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-3883/2020
 ATTAAAGGTTTATA1- C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_427202 MT358708
 2020-03-27 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-3889/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C241T C1059T C3037T C12880T C14408T A23403G G25563T G29553A AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_427203 MT358710
 2020-03-27 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-3895/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C36T C8782T C17747T A17858G C18060T T28144C AAAA29900-

EPI_ISL_427204 MT358711
 2020-03-27 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-3900/2020
 ATTAAAGGTTTATACCTTCCCAGG1- A31T C36T C5784T C8782T G16957T C17747T A17858G C18060T G26730A T28144C ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_427205 MT358712
 2020-03-27 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-3903/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C36T C241T C1059T C3037T C14408T A23403G G25563T G29553A AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_427206 MT358713
 2020-03-27 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-3908/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- A6693G C8782T C17747T A17858G C18060T C25339T T28144C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_427207 MT358714
 2020-03-27 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-3911/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C3037T C14408T A23403G G25563T G29553A AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_427208
 2020-03-27 2020-04-17
 United States hCoV-19/USA/WA-UW-3917/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C36T C2334T C8782T C17747T A17858G C18060T G26152T T28144C -G29863AAAAAA TG29867AA C29870A

EPI_ISL_427209 MT358715
 2020-03-27 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-3918/2020
 AT1- C241T C1059T C3037T C12880T C14408T G17049A A23403G G25563T G29553A

EPI_ISL_427210 MT358716
 2020-03-27 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-3923/2020
 AT1-C C36T C241T C1059T C3037T C6548T A11595G C14408T A23403G G24348T G25563T G29553A G29864A TG29867AA C29870A -29904AAAAAAAAAAAAAAAAAA

EPI_ISL_427211 MT358717
 2020-03-27 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-3932/2020
 ATTAAAGGTTTATA1- C36T C241T C1059T C3037T C6040T C14408T A23403G G25563T GTT26155- AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_427212 MT358718
 2020-03-27 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-3935/2020
 A1G C36T C241T C379A C1059T T2244C C3037T A10761G C14408T A23403G C23865T G25563T G29862A G29864A TG29867AA C29870A

EPI_ISL_427213 MT358719
 2020-03-27 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-3939/2020
 ATTAAAG1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_427215 MT358721
 2020-03-27 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-3941/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A31T C36T C241T C1059T C3037T G11083T C14408T A23403G G25563T G29553A G29862A G29864A TG29867AA C29870A -29904AAAAAAAAAAAAAAAAAA

EPI_ISL_427216 MT358722
 2020-03-27 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-3942/2020
 ATTAAAGGTTTATACCTTC1- C241T C1059T C3037T C14408T A23403G G25563T G29553A G29864A TG29867AA C29870A -29904AAAAAAAAAAAAAAAAAA

EPI_ISL_427217 MT358723
 2020-03-27 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-3946/2020
 ATTAA1- C36T C241T C1059T C3037T C14408T A23403G C25096T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_427218 MT358724
 2020-03-27 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-3950/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- AAC34TWT G354A G6419A C8782T C17747T A17858G C18060T C25521T T28144C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_428328
 2020-03-27 2020-04-20
 United States hCoV-19/USA/WI-UW-232/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428329
 2020-03-27 2020-04-20
 United States hCoV-19/USA/WI-UW-233/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428332
 2020-03-27 2020-04-20
 United States hCoV-19/USA/WI-UW-236/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T9518C G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428333
 2020-03-27 2020-04-20
 United States hCoV-19/USA/WI-UW-237/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T2116A A10070C G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428334
 2020-03-27 2020-04-20
 United States hCoV-19/USA/WI-UW-238/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428335
 2020-03-27 2020-04-20
 United States hCoV-19/USA/WI-UW-239/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428336
 2020-03-27 2020-04-20
 United States hCoV-19/USA/WI-UW-240/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428337
 2020-03-27 2020-04-20
 United States hCoV-19/USA/WI-UW-241/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A3081C G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428684
 2020-03-27 2020-04-21
 Spain hCoV-19/Spain/Madrid_H12_20/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T C14408T A20268G A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_428685
 2020-03-27 2020-04-21
 Spain hCoV-19/Spain/Madrid_H12_21/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T C3037T C14408T TACCACTTCAGAGAGCTAGGTGTTGTACATAATCAGGATGTAAACTTACATAGCTCTAG14476- TAG14538CCC TATGCTGCTGACCCTGCTATGCACGCTGCTTCT14560- AGGAGTATGCTGATGTCTTTCATTTGTACTTACAATACATAAGAAAGCTACATGATG16064- A20268G A23403G TTGTGTGCGTACTGCTGCAATATTGTTAACGTGAGTCTT26359- AGACCACACAAGGCAGATGGGCTATATAAACGTTTT29542- G29734C TATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29791-

EPI_ISL_428700
 2020-03-27 2020-04-21
 Spain hCoV-19/Spain/Madrid_H12_2501/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C3874T C8782T T12364A C18401T A19719T C26088T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428701
 2020-03-27 2020-04-21
 Spain hCoV-19/Spain/Madrid_H12_2902/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C17639T A20268G A23403G C28638T C29640T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428894
 2020-03-27 2020-04-22
 Russia hCoV-19/Russia/Buryatia-84506/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_428896
 2020-03-27 2020-04-22
 Russia hCoV-19/Russia/Vector_84801/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_428906
 2020-03-27 2020-04-22
 Russia hCoV-19/Russia/Buryatia-84504/2020
 C241T C3037T C14408T A23403G C27371T GGG28881AAC

EPI_ISL_428912
 2020-03-27 2020-04-22
 Russia hCoV-19/Russia/Sakhalin-84401/2020
 C241T C1059T C3037T C14408T T21775C A23403G G25563T G28371T

EPI_ISL_428913
 2020-03-27 2020-04-22
 Russia hCoV-19/Russia/Buryatia-84508/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_428918
 2020-03-27 2020-04-22
 Russia hCoV-19/Russia/Novosibirsk-84101/2020
 C241T C3037T C12651T C14408T A23403G GGG28881AAC

EPI_ISL_428923
 2020-03-27 2020-04-22
 Russia hCoV-19/Russia/Sverdlovsk-84302/2020
 C241T C541T C1059T C3037T G11083T C14408T C17372T A23403G G25563T

EPI_ISL_429129
 2020-03-27 2020-04-23
 Sweden hCoV-19/Sweden/20-08681/2020
 C241T AAGTCATTT686- C1059T G2808A C3037T C14408T G20709T G21800T A23403G G25563T A26433G

EPI_ISL_429131
 2020-03-27 2020-04-23
 Sweden hCoV-19/Sweden/20-08684/2020
 C241T C1059T C1302T C3037T C14408T A23403G G25563T

EPI_ISL_429132
 2020-03-27 2020-04-23
 Sweden hCoV-19/Sweden/20-08685/2020
 C241T C1059T C1302T C3037T G3995A C14408T G15451A A23403G C23972A G25563T

EPI_ISL_429622 MT375451
 2020-03-27 2020-04-23
 United States SARS-CoV-2/human/USA/WA-UW-4763/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C36T C241T C1059T C3037T C14408T G16245A A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_429624 MT375453
 2020-03-27 2020-04-23
 United States SARS-CoV-2/human/USA/WA-UW-4769/2020
 ATTAAAGGTTTATACCTT1- C36T C241T C1059T C3037T C14408T A23403G G25563T -29904AA

EPI_ISL_429625 MT375454
 2020-03-27 2020-04-23
 United States SARS-CoV-2/human/USA/WA-UW-4770/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACT1- C241T C1059T C3037T C10989T C14408T A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_429627 MT375456
 2020-03-27 2020-04-23
 United States SARS-CoV-2/human/USA/WA-UW-4777/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T C3037T C12488T C14408T A23403G G25563T A29551G AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_429784
 2020-03-27 2020-04-24
 Luxembourg hCoV-19/Luxembourg/LNS5677421/2020
 C241T C1059T C3037T C14408T A23403G G25563T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_429975 MT415900
 2020-03-27 2020-04-24
 United States SARS-CoV-2/human/USA/VA-DCLS-0076/2020
 ATTA1- C241T C2416T C3037T G4523A C10712T C14408T A23403G G25563T

EPI_ISL_429977 MT415902
 2020-03-27 2020-04-24
 United States SARS-CoV-2/human/USA/VA-DCLS-0078/2020
 ATTAAAGGTTTATACC1- C241T C2416T C3037T G4523A C10712T C14408T A23403G G25563T

EPI_ISL_430653 MT451657
 2020-03-27 2020-04-27
 Australia SARS-CoV-2/human/AUS/VIC966/2020
 C3096T G4960R T5820Y G13627T C14805T C15540T A19175R G26144T A28338G A29005R G29212T

EPI_ISL_430655 MT451655
 2020-03-27 2020-04-27
 Australia SARS-CoV-2/human/AUS/VIC964/2020
 C241T C3037T T7438C T11731Y C14408T T15166C A23403G A26864G C29353T

EPI_ISL_430796
 2020-03-27 2020-04-27
 Argentina hCoV-19/Argentina/PAIS_A004/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATC1- C241T C3037T G11083T C14408T A20268G A23403G C25721G C25904T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_430797
 2020-03-27 2020-04-27
 Argentina hCoV-19/Argentina/PAIS_A005/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1473T C3037T C14408T A23403G GGG28881AAC G29473A ATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29850-

EPI_ISL_430947 MT412304
 2020-03-27 2020-04-28
 United States SARS-CoV-2/human/USA/ID-UW-4354/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- C36T C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T C28093T GG29861AA G29864A TG29867AA C29870A

EPI_ISL_431019
 2020-03-27 2020-04-29
 United States hCoV-19/USA/AK-PHL074/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T A6325M C14408T A23403G G25563T G28044T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_432510
 2020-03-27 2020-04-29
 United Kingdom hCoV-19/England/SHEF-CB5E4/2020
 C241T C503T C1469T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_432539
 2020-03-27 2020-04-29
 United Kingdom hCoV-19/England/SHEF-CD05A/2020
 C241T C3037T C14408T A20268G A23403G C28854T G29737A

EPI_ISL_432804
 2020-03-27 2020-04-29
 United Kingdom hCoV-19/England/SHEF-C56AB/2020
 C241T C3037T T7438C G10097A C14408T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_433338
 2020-03-27 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR780/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C5997T C12710T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_433344
 2020-03-27 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR803/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- T5551C C7423T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_433346
 2020-03-27 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR811/2020
 ATG1605- G5567A C12710T C28854T

EPI_ISL_433348
 2020-03-27 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR833/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C2558T C6040T G11083T C14805T G17790T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_433355
 2020-03-27 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR867/2020
 C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_433356
 2020-03-27 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR874/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T5551C C7423T A29313G ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_433357
 2020-03-27 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR901/2020
 ATG1605- C6968T A10770G C12710T C28854T

EPI_ISL_433358
 2020-03-27 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR902/2020
 ATG1605- A10770G C12710T C25466T C28854T

EPI_ISL_433359
 2020-03-27 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR903/2020
 ATG1605- A10770G C12710T C28854T

EPI_ISL_433744
 2020-03-27 2020-04-29
 United Kingdom hCoV-19/England/CAMB-78504/2020
 C241T C3037T C14408T C19366T A23403G GGG28881AAC

EPI_ISL_433746
 2020-03-27 2020-04-29
 United Kingdom hCoV-19/England/CAMB-78540/2020
 A2480G C2558T G11083T C14805T T19479C G26144T

EPI_ISL_433816
 2020-03-27 2020-04-29
 United Kingdom hCoV-19/England/CAMB-79A5F/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_433818
 2020-03-27 2020-04-29
 United Kingdom hCoV-19/England/CAMB-79A9B/2020
 C241T C1912T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_433819
 2020-03-27 2020-04-29
 United Kingdom hCoV-19/England/CAMB-79AB9/2020
 T931C ATG1605- T12418C G20024A G26416C C27920A G29425A

EPI_ISL_433821
 2020-03-27 2020-04-29
 United Kingdom hCoV-19/England/CAMB-79AD7/2020
 C857T G11083T C14805T C23707T G26144T

EPI_ISL_433823
 2020-03-27 2020-04-29
 United Kingdom hCoV-19/England/CAMB-79AF5/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_434131 MT632787
 2020-03-27 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S371/2020
 C241T C379A C1059T T2244C C3037T A10761G C14408T A23403G G25563T

EPI_ISL_434136 MT632888
 2020-03-27 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S376/2020
 G1401A C8782T C17747T A17858G C18060T T28144C T28582C

EPI_ISL_434138 MT632848
 2020-03-27 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S378/2020
 C241T C379A C1059T T2244C C3037T A10761G C14408T A23403G G25563T

EPI_ISL_434139 MT632838
 2020-03-27 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S379/2020
 C241T C379A C1059T T2244C C3037T A10761G C14408T A23403G G25563T

EPI_ISL_434140 MT632942
 2020-03-27 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S380/2020
 C8782T C17747T A17858G C18060T C18264T C24919T T28144C

EPI_ISL_434142 MT632818
 2020-03-27 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S382/2020
 C241T C379A C1059T T2244C C3037T A10761G C14408T A23403G G25563T

EPI_ISL_434143 MT632803
 2020-03-27 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S383/2020
 C8782T G11083T C17747T A17858G C18060T G19872T G21724T T28144C

EPI_ISL_434144 MT632807
 2020-03-27 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S384/2020
 C241T C379A C1059T T2244C C3037T A10761G C14408T C22286T A23403G G25563T

EPI_ISL_434147 MT632801
 2020-03-27 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S387/2020
 C241T C379A C1059T T2244C C3037T A10761G C14408T A23403G G25563T

EPI_ISL_434148 MT632782
 2020-03-27 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S388/2020
 C241T C379A C1059T T2244C C3037T G5917A A10761G C14408T C22530T A23403G G25563T

EPI_ISL_434150 MT632819
 2020-03-27 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S390/2020
 C241T C379A C1059T T2244C C3037T A10761G C14408T C21575T A23403G G25563T

EPI_ISL_434279 MT632798
 2020-03-27 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S519/2020
 C8782T G11083T C17747T A17858G C18060T G19872T G21724T T28144C

EPI_ISL_434319 MT632889
 2020-03-27 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S559/2020
 C241T C1059T C3037T C14408T A23403G C23683T G25563T G29553A

EPI_ISL_434355
 2020-03-27 2020-04-29
 Belgium hCoV-19/Belgium/UGent-37/2020
 C241T C3037T C14408T A20268G A23403G G29734C

EPI_ISL_434357
 2020-03-27 2020-04-29
 Belgium hCoV-19/Belgium/UGent-40/2020
 C241T C3037T C14408T C23393T A23403G C26270T C29614T

EPI_ISL_434637 MT295465
 2020-03-27 2020-04-06
 United States SARS-CoV-2/human/USA/UF-2/2020
 ATTAAAGGTT1- T490A C3177T C8782T G11557A T18736C C21575T C24034T T26729C G28077C T28144C A29700G

EPI_ISL_434642
 2020-03-27 2020-04-30
 Sweden hCoV-19/Sweden/20-08686/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T

EPI_ISL_434902
 2020-03-27 2020-05-01
 United States hCoV-19/USA/TX-HMH274/2020
 T490A C3177T C6040T C8782T C8950T G12478A T18736C C24034T T26729C G28077C T28144C C28896G C29451T A29700G

EPI_ISL_434903
 2020-03-27 2020-05-01
 United States hCoV-19/USA/TX-HMH275/2020
 C241T C1059T C3037T C14408T C23191T A23403G G25563T

EPI_ISL_434904
 2020-03-27 2020-05-01
 United States hCoV-19/USA/TX-HMH276/2020
 T490A C3177T C6040T C8782T C8950T G12478A T18736C T19713C C24034T T26729C G28077C T28144C C28896G C29451T A29700G

EPI_ISL_434905
 2020-03-27 2020-05-01
 United States hCoV-19/USA/TX-HMH277/2020
 T490A C3177T C6040T C8782T C8950T G12478A T18736C C24034T T26729C G28077C T28144C C28896G C29451T A29700G

EPI_ISL_434906
 2020-03-27 2020-05-01
 United States hCoV-19/USA/TX-HMH278/2020
 C241T C1059T C2102T C3037T C14408T A23403G G25563T C26111T

EPI_ISL_434907
 2020-03-27 2020-05-01
 United States hCoV-19/USA/TX-HMH279/2020
 T490A C3177T C6040T C8782T C8950T G12478A T18736C C24034T T26729C G28077C T28144C C28896G C29451T A29700G

EPI_ISL_434908
 2020-03-27 2020-05-01
 United States hCoV-19/USA/TX-HMH280/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T

EPI_ISL_434909
 2020-03-27 2020-05-01
 United States hCoV-19/USA/TX-HMH281/2020
 C241T C1059T C3037T C10188T C14408T A23403G T24982C G25563T C27964T

EPI_ISL_434910
 2020-03-27 2020-05-01
 United States hCoV-19/USA/TX-HMH282/2020
 C241T C1059T C3037T C14408T C16260T A23403G G25563T C28821A

EPI_ISL_434911
 2020-03-27 2020-05-01
 United States hCoV-19/USA/TX-HMH283/2020
 C241T C1059T T2803A C3037T C14408T A23403G G25563T C27964T

EPI_ISL_434912
 2020-03-27 2020-05-01
 United States hCoV-19/USA/TX-HMH284/2020
 C241T C1059T C1917T C3037T C14408T G23120T A23403G G25563T A25822G

EPI_ISL_434913
 2020-03-27 2020-05-01
 United States hCoV-19/USA/TX-HMH285/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434914
 2020-03-27 2020-05-01
 United States hCoV-19/USA/TX-HMH287/2020
 C241T C3037T C14408T G15243T A23403G

EPI_ISL_434915
 2020-03-27 2020-05-01
 United States hCoV-19/USA/TX-HMH289/2020
 C241T C3037T C14408T A15596G C18877T A23403G G25563T

EPI_ISL_434916
 2020-03-27 2020-05-01
 United States hCoV-19/USA/TX-HMH290/2020
 T490A C3177T C6040T C8782T C8950T G12478A T18736C C24034T T26729C G28077C T28144C C28896G C29451T A29700G

EPI_ISL_434917
 2020-03-27 2020-05-01
 United States hCoV-19/USA/TX-HMH291/2020
 C241T C1059T A2969G C3037T C5140T C14408T A23403G A24710G G25563T G26389T C27964T

EPI_ISL_434918
 2020-03-27 2020-05-01
 United States hCoV-19/USA/TX-HMH292/2020
 C241T C1059T C3037T C14408T G17808T A23403G G25563T C27964T

EPI_ISL_434919
 2020-03-27 2020-05-01
 United States hCoV-19/USA/TX-HMH294/2020
 C241T T1918C C3037T C14408T C18877T A23403G G25563T G25906T

EPI_ISL_434920
 2020-03-27 2020-05-01
 United States hCoV-19/USA/TX-HMH295/2020
 C241T C1059T G1148T C3037T G10096A C14408T A23403G G25563T C27964T

EPI_ISL_434921
 2020-03-27 2020-05-01
 United States hCoV-19/USA/TX-HMH298/2020
 C241T C1059T C3037T C14408T A23403G C23453T G25563T

EPI_ISL_434935
 2020-03-27 2020-05-01
 United States hCoV-19/USA/TX-HMH323/2020
 C241T C1059T C3037T G8353T C14408T C17678T A23403G G25563T

EPI_ISL_434945
 2020-03-27 2020-05-01
 United States hCoV-19/USA/TX-HMH351/2020
 C241T C1059T C3037T C14408T C15525T A23403G G25563T

EPI_ISL_434961
 2020-03-27 2020-05-01
 United States hCoV-19/USA/TX-HMH370/2020
 T490A C3177T C6040T C8782T C8950T G12478A T18736C T19713C T22981C C24034T T26729C G28077C T28144C C28896G C29451T A29700G

EPI_ISL_434978
 2020-03-27 2020-05-01
 United States hCoV-19/USA/TX-HMH391/2020
 T490A G1439T C2723T C3177T C6040T C8782T C8950T G12478A T18736C C24034T T26729C C26822T G28077C T28144C C28896G C29451T A29700G

EPI_ISL_435411
 2020-03-27 2020-05-04
 Hungary hCoV-19/Hungary/SRC-00541/2020
 C241T C313T C3037T A8763G C14408T A23403G GGG28881AAC

EPI_ISL_435416
 2020-03-27 2020-05-04
 Hungary hCoV-19/Hungary/SRC-00620/2020
 G1440A G2891A G3242A C15049T G16647T C17185T G27261T G29751C

EPI_ISL_435422
 2020-03-27 2020-05-04
 Hungary hCoV-19/Hungary/MBL-464/2020
 C241T C3037T T11795A C14408T A20268G A23403G

EPI_ISL_435423
 2020-03-27 2020-05-04
 Hungary hCoV-19/Hungary/MBL-465/2020
 C241T C3037T C14408T A20268G A23403G

EPI_ISL_435424
 2020-03-27 2020-05-04
 Hungary hCoV-19/Hungary/MBL-469/2020
 C241T C3037T C14408T A20268G A23403G

EPI_ISL_435448
 2020-03-27 2020-05-05
 United States hCoV-19/USA/LA-SR0144/2020
 T9A C241T C1059T C3037T C14408T T18513C T22054C A23403G G25563T C27964T

EPI_ISL_435449
 2020-03-27 2020-05-05
 United States hCoV-19/USA/LA-SR0145/2020
 C241T C1059T A2745C C3037T C14408T A23403G G25563T C27964T

EPI_ISL_435451
 2020-03-27 2020-05-05
 United States hCoV-19/USA/LA-SR0148/2020
 C241T C1059T C3037T C10319T C14408T A23403G G25563T C27964T

EPI_ISL_436105
 2020-03-27 2020-05-06
 Taiwan hCoV-19/Taiwan/TSGH-20/2020
 T514C T1523A ATG1605- T1798A G2732C A4143T T8599A C11741T G15629T T21797A T21799A T21819A C26641A -29892AAAAAAAAAAT

EPI_ISL_436346
 2020-03-27 2020-05-06
 Spain hCoV-19/Spain/Valencia251/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C8782T T9477A C14805T C17745Y A19426R A22151G G25979T T28144C C28657T C28863T G29745C AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_436469
 2020-03-27 2020-05-06
 United States hCoV-19/USA/PA-MGSC14-04/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_436475
 2020-03-27 2020-05-06
 United States hCoV-19/USA/PA-MGSC21-04/2020
 C241T C3037T C14408T C18877T A23403G A23884G G25563T AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_436483
 2020-03-27 2020-05-06
 United States hCoV-19/USA/PA-MGSC33-05/2020
 C241T C1059T C3037T C14408T A23403G G25563T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_436484
 2020-03-27 2020-05-06
 United States hCoV-19/USA/PA-MGSC35-05/2020
 C241T C3037T C11878A C14408T C18877T G22302A A22305C C22594T A23403G G25563T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_436485
 2020-03-27 2020-05-06
 United States hCoV-19/USA/PA-MGSC36-05/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27945T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_436487
 2020-03-27 2020-05-06
 United States hCoV-19/USA/PA-MGSC39-05/2020
 C1968T C8782T T10771C C17747T A17858G C18060T T28144C GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_436491
 2020-03-27 2020-05-06
 United States hCoV-19/USA/PA-MGSC43-05/2020
 C241T C3037T C9836T G10265A C14408T A23403G GGG28881AAC C29218T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_436566 MT706380
 2020-03-27 2020-05-06
 United States SARS-CoV-2/human/USA/WI-UW-272/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_436686
 2020-03-27 2020-05-07
 South Africa hCoV-19/South Africa/KRISP-045/2020
 C241T C3037T C4002T G10097A G11083T C13536T C14408T A23403G C23731T GGG28881AAC

EPI_ISL_436870 MT439310
 2020-03-27 2020-05-06
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20188/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T T12433Y G13897K C14408T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_436874 MT439307
 2020-03-27 2020-05-06
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20144/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T C1059T G1820R C3037T A5209R C14408T G16852K A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_436875 MT439312
 2020-03-27 2020-05-06
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20146/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGA1- C241T C1059T C3037T C3317T C14408T A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_436876 MT439316
 2020-03-27 2020-05-06
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20151/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T T833C C1059T C3037T C14408T C19854T A23403G G25563T C27964T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_436877 MT439315
 2020-03-27 2020-05-06
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20155/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_436878 MT439311
 2020-03-27 2020-05-06
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20165/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C1059T C3037T C14408T A23403G G25563T T27384Y AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_436879 MT439318
 2020-03-27 2020-05-06
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20168/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C14408T C19421Y A23403G T24832C G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_436880 MT439314
 2020-03-27 2020-05-06
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20178/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T G960A C1059T C3037T C4202T C14408T A23403G G25563T A28032R AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_436975
 2020-03-27 2020-05-08
 Denmark hCoV-19/Denmark/ALAB-SSI-572/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_436986
 2020-03-27 2020-05-08
 Denmark hCoV-19/Denmark/ALAB-SSI-598/2020
 C241T C1059T C1302T C3037T C14408T A23403G G25563T

EPI_ISL_436988
 2020-03-27 2020-05-08
 Denmark hCoV-19/Denmark/ALAB-SSI-604/2020
 C241T C1059T C3037T A4548G T8788C C14408T A23403G G25563T G26951A

EPI_ISL_436989
 2020-03-27 2020-05-08
 Denmark hCoV-19/Denmark/ALAB-SSI-605/2020
 C241T C1059T C3037T A4548G T8788C C14408T A23403G G25563T G26951A

EPI_ISL_437031
 2020-03-27 2020-05-08
 Denmark hCoV-19/Denmark/ALAB-SSI-671/2020
 C241T C1059T C3037T C12781T C14408T C15842A G22103C A23403G G25563T

EPI_ISL_437032
 2020-03-27 2020-05-08
 Denmark hCoV-19/Denmark/ALAB-SSI-672/2020
 C241T C1059T C1302T C3037T C14408T A23403G G25563T

EPI_ISL_437035
 2020-03-27 2020-05-08
 Denmark hCoV-19/Denmark/ALAB-SSI-675/2020
 C241T C3037T C7819T C7834T C14408T C16887T A23403G

EPI_ISL_437036
 2020-03-27 2020-05-08
 Denmark hCoV-19/Denmark/ALAB-SSI-676/2020
 C241T C1059T C3037T C12781T C14408T C15842A A23403G G25563T

EPI_ISL_437037
 2020-03-27 2020-05-08
 Denmark hCoV-19/Denmark/ALAB-SSI-679/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27092T

EPI_ISL_437038
 2020-03-27 2020-05-08
 Denmark hCoV-19/Denmark/ALAB-SSI-688/2020
 C241T C3037T C7834T C14408T A23403G

EPI_ISL_437039
 2020-03-27 2020-05-08
 Denmark hCoV-19/Denmark/ALAB-SSI-689/2020
 C241T C3037T C7834T C14408T A23403G

EPI_ISL_437040
 2020-03-27 2020-05-08
 Denmark hCoV-19/Denmark/ALAB-SSI-690/2020
 C241T C3037T C7834T C14408T A23403G

EPI_ISL_437041
 2020-03-27 2020-05-08
 Denmark hCoV-19/Denmark/ALAB-SSI-691/2020
 ATG1605- A25259G C28253A

EPI_ISL_437042
 2020-03-27 2020-05-08
 Denmark hCoV-19/Denmark/ALAB-SSI-692/2020
 C241T C1059T C1302T C3037T C14408T C18508T A23403G G25563T G26849C G27047T

EPI_ISL_437191
 2020-03-27 2020-05-08
 Indonesia hCoV-19/Indonesia/JKT-EIJK03/2020
 G11596T

EPI_ISL_437198
 2020-03-27 2020-05-08
 Austria hCoV-19/Austria/Graz-MUG2/2020
 C241T C14408T A23403G

EPI_ISL_437267
 2020-03-27 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0071/2020
 C241T C3037T C14408T G19825T A23403G G25395T GGG28881AAC

EPI_ISL_437305
 2020-03-27 2020-05-08
 Turkey hCoV-19/Turkey/HSGM-1418/2020
 ATTAAA1- C241T C3037T C14408T A23403G C26549T GGG28881AAC

EPI_ISL_437306
 2020-03-27 2020-05-08
 Turkey hCoV-19/Turkey/HSGM-1450/2020
 ATTAAA1- C884T G1397A G8653T C8683A G11083T T28688C G29742T

EPI_ISL_437310
 2020-03-27 2020-05-08
 Turkey hCoV-19/Turkey/HSGM-1081/2020
 ATTAAA1- C241T C3037T C14408T C18877T C22444T A23403G G25563T C28854T

EPI_ISL_437311
 2020-03-27 2020-05-08
 Turkey hCoV-19/Turkey/HSGM-1428/2020
 ATTAAA1- C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_437313
 2020-03-27 2020-05-08
 Turkey hCoV-19/Turkey/HSGM-302/2020
 ATTAAA1- C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_437317
 2020-03-27 2020-05-08
 Turkey hCoV-19/Turkey/HSGM-1027/2020
 ATTAAA1- C241T C8782T C13476Y G22468T G25314T T28144C G28878A

EPI_ISL_437434
 2020-03-27 2020-05-08
 United States hCoV-19/env/USA/MT-BWRF-0327/2020
 C241T C1059T C3037T G8102T C14408T G14712A C14877T GG22343CC A23403G G25563T G28851T

EPI_ISL_437546
 2020-03-27 2020-05-11
 United States hCoV-19/USA/LA-SR0209/2020
 C241T C1059T C3037T C14408T T18513C T22054C A23403G G25563T C27964T

EPI_ISL_437640
 2020-03-27 2020-05-11
 Denmark hCoV-19/Denmark/ALAB-SSI-1299/2020
 C241T C1059T C1302T C3037T C14408T A23403G G25563T

EPI_ISL_437667
 2020-03-27 2020-05-11
 Denmark hCoV-19/Denmark/ALAB-SSI-745/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T

EPI_ISL_437668
 2020-03-27 2020-05-11
 Denmark hCoV-19/Denmark/ALAB-SSI-748/2020
 C241T C1059T C1302T C1387T C3037T C6636T CT6781TC C11074T T12520C C14408T A23403G G25563T C29095T

EPI_ISL_437909 MT459923
 2020-03-27 2020-05-11
 Greece SARS-CoV-2/human/GRC/49_36716/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- A5838G A8115G G11083T C14805T T17247C A17961G G26144T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_437937
 2020-03-27 2020-05-12
 Austria hCoV-19/Austria/CeMM0055/2020
 G1440A G2891A C7011T C10369Y C17733T T22521K C23380T G25593C A29865R AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_438114
 2020-03-27 2020-05-12
 Austria hCoV-19/Austria/CeMM0290/2020
 C241T C1059T C3037T C4993T C6638Y C14408T T22521K A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_438115
 2020-03-27 2020-05-12
 Austria hCoV-19/Austria/CeMM0291/2020
 C241T C1059T C3037T G3351R C7817Y C11152Y C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_438116
 2020-03-27 2020-05-12
 Austria hCoV-19/Austria/CeMM0292/2020
 C241T C3037T G4201K C14408T T22521K A23403G GGG28881RRS TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_438117
 2020-03-27 2020-05-12
 Austria hCoV-19/Austria/CeMM0294/2020
 C241T C3037T T12118Y C14408T T22521K A23403G C24642T C27046T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_438118
 2020-03-27 2020-05-12
 Austria hCoV-19/Austria/CeMM0295/2020
 C241T C3037T C14408T T22521K A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_438119
 2020-03-27 2020-05-12
 Austria hCoV-19/Austria/CeMM0296/2020
 C241T C3037T C14408T A20268G T22521K A23403G G29734C AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_438972
 2020-03-27 2020-05-12
 Japan hCoV-19/Japan/Donner28/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11272T C11752T C25587T C25665T C26447T TTA27698- T28912C ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_439120
 2020-03-27 2020-05-12
 United Kingdom hCoV-19/Scotland/CVR839/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1587G T7816A G11083T C14805T T17247C C24023T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_439123
 2020-03-27 2020-05-12
 United Kingdom hCoV-19/Scotland/CVR866/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C19170T G19509A A23403G C28849T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_439134
 2020-03-27 2020-05-12
 United Kingdom hCoV-19/Scotland/CVR910/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G219T C241T C313T C3037T G4006T G5155A C14408T C19983T A23403G C26645T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_440951
 2020-03-27 2020-05-12
 United Kingdom hCoV-19/England/LOND-D3516/2020
 A2480G C2558T G11083T C12043T C14805T G20679T G26144T

EPI_ISL_440952
 2020-03-27 2020-05-12
 United Kingdom hCoV-19/England/LOND-D3525/2020
 C241T C3037T C4002T G10097A C13536T C14184T C14408T C21058T A23403G C23731T C28807T GGG28881AAC

EPI_ISL_440953
 2020-03-27 2020-05-12
 United Kingdom hCoV-19/England/LOND-D3534/2020
 C241T AAGTCATTT686- C3037T C14408T A23403G C25350T T27280C

EPI_ISL_440954
 2020-03-27 2020-05-12
 United Kingdom hCoV-19/England/LOND-D3543/2020
 C241T C3037T G10870T C14408T A23403G C28651T GGG28881AAC

EPI_ISL_440956
 2020-03-27 2020-05-12
 United Kingdom hCoV-19/England/LOND-D3561/2020
 C241T C3037T C12073T C14408T A23403G C25824T GGG28881AAC

EPI_ISL_440957
 2020-03-27 2020-05-12
 United Kingdom hCoV-19/England/LOND-D358F/2020
 C241T C3037T C14408T A23403G A26530G

EPI_ISL_440958
 2020-03-27 2020-05-12
 United Kingdom hCoV-19/England/LOND-D359E/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_441690
 2020-03-27 2020-05-12
 United Kingdom hCoV-19/Northern Ireland/NIRE-FAA56/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12854T C14408T G18412A A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_443275
 2020-03-27 2020-05-12
 France hCoV-19/France/B5397/2020
 C36T C241T C3037T C10377T C14408T A23403G C27923T G28378A GGG28881AAC AAAAAAAAAAAAAAAAAAAAAA29882-

EPI_ISL_443276
 2020-03-27 2020-05-12
 France hCoV-19/France/B5400/2020
 C28T C241T C1059T C3037T T13006C C14408T A23403G G25563T C25688T G28378T AAAAAAAAAAAAAAAAAAAAAA29882-

EPI_ISL_443289
 2020-03-27 2020-05-12
 France hCoV-19/France/B5678/2020
 C241T C2416T C3037T C14408T A23403G G25563T TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_443707
 2020-03-27 2020-05-12
 United Kingdom hCoV-19/England/BRIS-1252D1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1630C C3037T C14408T A23403G C27679T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_443780
 2020-03-27 2020-05-12
 United Kingdom hCoV-19/England/BRIS-125347/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G7042T G8861T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_444859
 2020-03-27 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-681/2020
 C241T C1059T C3037T C14408T A23403G G25563T G26951A

EPI_ISL_444860
 2020-03-27 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-682/2020
 C241T C1059T C3037T C12781T C14408T C15842A C21575T A23403G C25499T G25563T

EPI_ISL_444861
 2020-03-27 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-684/2020
 C241T C3037T C7834T C14408T A23403G

EPI_ISL_444862
 2020-03-27 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-687/2020
 C241T C1059T C1302T C3037T C14408T A23403G G25563T

EPI_ISL_444863
 2020-03-27 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-694/2020
 C241T C1059T C1302T C3037T C11074T C14408T A23403G G25563T

EPI_ISL_444864
 2020-03-27 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-700/2020
 G1440A G2891A C4668T G11083T C27535T

EPI_ISL_444866
 2020-03-27 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-705/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_444867
 2020-03-27 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-707/2020
 C241T T1237C C3037T C14408T G20398A A23403G A26530G

EPI_ISL_444870
 2020-03-27 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-713/2020
 C241T C1059T C1302T C3037T C14408T A23403G G25563T

EPI_ISL_444872
 2020-03-27 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-718/2020
 C241T C313T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_444877
 2020-03-27 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-726/2020
 C241T C1059T C1302T C3037T C14408T A23403G G25563T

EPI_ISL_444881
 2020-03-27 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-735/2020
 C241T C1059T C3037T C14408T T21976C A23403G G25563T

EPI_ISL_444883
 2020-03-27 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-741/2020
 C241T A476G C1059T C3037T G6341A C14408T A23403G G25563T

EPI_ISL_444884
 2020-03-27 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-742/2020
 C241T C1059T C1302T C3037T C14408T A23403G G25563T

EPI_ISL_444887
 2020-03-27 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-747/2020
 C241T C3037T A7483G C14408T C18744T A20268G A23403G

EPI_ISL_444912
 2020-03-27 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-799/2020
 C241T C2416T C3037T G8371T C14408T A23403G G25563T

EPI_ISL_444915
 2020-03-27 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-804/2020
 C241T C3037T C7834T C14408T A23403G

EPI_ISL_444922
 2020-03-27 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-819/2020
 C241T C1059T C3037T C14408T T21976C A23403G G25563T G29254T

EPI_ISL_444923
 2020-03-27 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-821/2020
 C241T C1059T C1302T C3037T C7029T C14408T A23403G G25563T

EPI_ISL_444930
 2020-03-27 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-835/2020
 C241T C3037T C7834T C14408T A23403G

EPI_ISL_444931
 2020-03-27 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-837/2020
 C241T C3037T C7834T C8357T C14408T A23403G

EPI_ISL_444945
 2020-03-27 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-860/2020
 C241T C1059T C3037T C12781T C14408T C15842A A23403G A23975G G25563T

EPI_ISL_444995
 2020-03-27 2020-05-14
 United States hCoV-19/USA/SC_NHRC_01/2020
 ATTAAAGGTTTAT1- C241T C1059T C3037T C14408T A23403G G25563T C29095T C29668T

EPI_ISL_444996
 2020-03-27 2020-05-14
 United States hCoV-19/USA/SC_NHRC_02/2020
 ATTAAAGGTTTA1- C241T C1059T C3037T C14408T A23403G G25563T C29095T

EPI_ISL_445167
 2020-03-27 2020-05-15
 United States hCoV-19/USA/CA-SR0313/2020
 C241T C1059T C3037T G3892T C14408T A23403G G25563T

EPI_ISL_445345
 2020-03-27 2020-05-15
 Chile hCoV-19/Chile/Temuco_11/2020
 ATTAAAGGTTTA1- TTCCCAGGTAA17- C241T C3037T C8389T C14408T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_447118 MT506546
 2020-03-27 2020-05-16
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20321/2020
 C241T C1059T C3037T A5011M C8772Y C10582Y C14408T A23403G G25563T G29402T

EPI_ISL_447285
 2020-03-27 2020-05-17
 Israel hCoV-19/Israel/701002681/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAA29892-

EPI_ISL_447399
 2020-03-27 2020-05-17
 Israel hCoV-19/Israel/2047004/2020
 C241T C2416T C3037T C14408T A23403G G25563T C26936T AAAAAAAAAAAA29892-

EPI_ISL_447498
 2020-03-27 2020-05-17
 Spain hCoV-19/Spain/Valencia/COV000566/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C10448T C12008T C14408T A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_447500
 2020-03-27 2020-05-17
 Spain hCoV-19/Spain/Alicante/COV000569/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C313T C3037T C14408T A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_447502
 2020-03-27 2020-05-17
 Spain hCoV-19/Spain/Valencia/COV000571/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C313T C3037T C10156Y C14408T C19170T A23403G G28541T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_447503
 2020-03-27 2020-05-17
 Spain hCoV-19/Spain/Valencia/COV000572/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C313T C3037T C14408T A23403G G28541T GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_447505
 2020-03-27 2020-05-17
 Spain hCoV-19/Spain/Valencia/COV000575/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C313T AAGTCATTT686- C3037T C5413T C14408T A23403G G28541T GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_447588 MT422806
 2020-03-27 2020-05-02
 United States SARS-CoV-2/human/USA/UF-4/2020
 C241T C1059T C3037T A4386G C10319T C14408T C22432T A23403G G25563T C27964T

EPI_ISL_447589 MT422807
 2020-03-27 2020-05-02
 United States SARS-CoV-2/human/USA/UF-5/2020
 C241T C1059T C3037T A4386G C10319T C14408T A23403G G25563T C27964T

EPI_ISL_447739
 2020-03-27 2020-05-18
 Colombia hCoV-19/Colombia/GUR-0207/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C3037T C10507T C14408T C18877T A23403G G25563T GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_447887 MT481927
 2020-03-27 2020-05-18
 United States SARS-CoV-2/human/USA/CA-CZB-1136/2020
 ATTAAA1- C241T C1059T C3037T C14408T C17410A C19610T A23403G G25563T C27964T

EPI_ISL_450302
 2020-03-27 2020-05-20
 Canada hCoV-19/Canada/Qc-L00240556/2020
 C241T C3037T C14408T C15324T A23403G C25433T

EPI_ISL_450303
 2020-03-27 2020-05-20
 Canada hCoV-19/Canada/Qc-L00240587/2020
 C241T C313T C3037T C14408T A20055G A23403G C25904T GGG28881AAC

EPI_ISL_450304
 2020-03-27 2020-05-20
 Canada hCoV-19/Canada/Qc-L00240652/2020
 C241T C3037T C14408T C15324T A23403G

EPI_ISL_450305
 2020-03-27 2020-05-20
 Canada hCoV-19/Canada/Qc-L00240685/2020
 C241T C3037T C14408T C15324T A23403G C25433T T27444C C27847T

EPI_ISL_450306
 2020-03-27 2020-05-20
 Canada hCoV-19/Canada/Qc-L00240857/2020
 C241T C2416T C3037T C4755T G14186T C14408T A23403G G25563T T29464A

EPI_ISL_450307
 2020-03-27 2020-05-20
 Canada hCoV-19/Canada/Qc-L00240954/2020
 C241T C3037T C14408T G15380T A20268G A23403G

EPI_ISL_450308
 2020-03-27 2020-05-20
 Canada hCoV-19/Canada/Qc-L00240979/2020
 C241T C3037T T6614C C14408T A18812G A20268G A23403G G28373T C28854T

EPI_ISL_450309
 2020-03-27 2020-05-20
 Canada hCoV-19/Canada/Qc-L00241026/2020
 C241T C3037T C8293T C11902T C14408T T18488C A23403G T24739C A26530G

EPI_ISL_450310
 2020-03-27 2020-05-20
 Canada hCoV-19/Canada/Qc-L00241042/2020
 A1515G C9223T G11083T G12565T C14805T T17247C G26144T

EPI_ISL_450311
 2020-03-27 2020-05-20
 Canada hCoV-19/Canada/Qc-L00241168/2020
 A158C C241T C3037T CC14407TT C15324T A23403G C25433T

EPI_ISL_450312
 2020-03-27 2020-05-20
 Canada hCoV-19/Canada/Qc-L00241192/2020
 C241T C3037T C8208T G9267A T9667C C10725T C14408T A23403G G25947T G28361A GGG28881AAC G29745T

EPI_ISL_450313
 2020-03-27 2020-05-20
 Canada hCoV-19/Canada/Qc-L00241205/2020
 C241T C3037T C14408T C15324T G15463T A23403G C25433T

EPI_ISL_450314
 2020-03-27 2020-05-20
 Canada hCoV-19/Canada/Qc-L00241208/2020
 C241T C3037T C14408T C15324T A23403G C25433T A26536G

EPI_ISL_450315
 2020-03-27 2020-05-20
 Canada hCoV-19/Canada/Qc-L00241245/2020
 C241T C3037T C14408T A20268G A23403G G27204T G28001T C28854T

EPI_ISL_450316
 2020-03-27 2020-05-20
 Canada hCoV-19/Canada/Qc-L00241292/2020
 C241T C3037T C14408T C18877T C22326T A23403G G25563T

EPI_ISL_450317
 2020-03-27 2020-05-20
 Canada hCoV-19/Canada/Qc-L00241344/2020
 C8782T C26088T T28144C

EPI_ISL_450318
 2020-03-27 2020-05-20
 Canada hCoV-19/Canada/Qc-L00241355/2020
 C241T C2416T C3037T C14408T C14786T G20578T A23403G G25563T G29474T

EPI_ISL_450323
 2020-03-27 2020-05-20
 India hCoV-19/India/CCMB_NIV3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_450456 MT499182
 2020-03-27 2020-05-21
 United States SARS-CoV-2/human/USA/CA-CZB-1207/2020
 ATTAAAGGTTTATACC1-

EPI_ISL_451095
 2020-03-27 2020-05-23
 Australia hCoV-19/Australia/SAP056/2020
 ATTA1- C241T C2416T C3037T C14408T A23403G G25563T

EPI_ISL_451096
 2020-03-27 2020-05-23
 Australia hCoV-19/Australia/SAP057/2020
 G4181A C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T

EPI_ISL_451097
 2020-03-27 2020-05-23
 Australia hCoV-19/Australia/SAP058/2020
 C241T C1059T C3037T C14408T A23403G G25563T G25879T

EPI_ISL_451098
 2020-03-27 2020-05-23
 Australia hCoV-19/Australia/SAP059/2020
 ATTA1- C241T C1059T C3037T C14408T A23403G G25563T G25879T

EPI_ISL_451186
 2020-03-27 2020-05-23
 Uganda hCoV-19/Uganda/UG004/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T G10097A C14408T A23403G C23731T C25460T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_452101
 2020-03-27 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-SSI-763/2020
 C241T C3037T G12395A C14408T G17014T C18744T A20268G A23403G

EPI_ISL_452601
 2020-03-27 2020-05-27
 Spain hCoV-19/Spain/COV001085/2020
 A929G G11083T A12986G C14805T C16969T C23707T G26144T G28899T

EPI_ISL_452637
 2020-03-27 2020-05-27
 Spain hCoV-19/Spain/COV000935/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T

EPI_ISL_452644
 2020-03-27 2020-05-27
 Spain hCoV-19/Spain/COV000927/2020
 C241T C3037T C14408T A20268G A23403G

EPI_ISL_452651
 2020-03-27 2020-05-27
 Spain hCoV-19/Spain/COV000918/2020
 C241T C3037T C14408T A20268G A23403G

EPI_ISL_453854
 2020-03-27 2020-05-28
 Portugal hCoV-19/Portugal/PT0138/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C1545T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_453855
 2020-03-27 2020-05-28
 Portugal hCoV-19/Portugal/PT0139/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T T9995G C14408T A23403G C28093T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_453860
 2020-03-27 2020-05-28
 Portugal hCoV-19/Portugal/PT0144/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C14408T A23403G GGG28881AAC A29396G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_453870
 2020-03-27 2020-05-28
 Portugal hCoV-19/Portugal/PT0154/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- A2480G C2558T G11083T C14805T C15924T G26144T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_453872
 2020-03-27 2020-05-28
 Portugal hCoV-19/Portugal/PT0156/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- C241T C3037T C3140T C14408T A23403G G24077T T28705C C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_453873
 2020-03-27 2020-05-28
 Portugal hCoV-19/Portugal/PT0157/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- C241T C3037T C14408T G16558T A23403G C23603T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_453876
 2020-03-27 2020-05-28
 Portugal hCoV-19/Portugal/PT0160/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- C241T AAGTCATTT686- C3037T C3140T T4033C C14408T A23403G G24077T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454171
 2020-03-27 2020-05-28
 Portugal hCoV-19/Portugal/PT0447/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23589T C23731T C25710T GGG28881AAC CGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29754-

EPI_ISL_454307
 2020-03-27 2020-05-28
 Portugal hCoV-19/Portugal/PT0584/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C1059T C3037T C14408T A23403G C25546T G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454348
 2020-03-27 2020-05-28
 Portugal hCoV-19/Portugal/PT0625/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C920T C3037T C6968T A13947T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454359
 2020-03-27 2020-05-28
 United States hCoV-19/USA/PA-MGEL73/2020
 C241T C1059T C3037T C14408T A23403G G25563T G28368A GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_454636 MT533233
 2020-03-27 2020-05-28
 United States SARS-CoV-2/human/USA/CA-CZB-1278/2020
 C8782T C17747Y A17858G C18060T A24694T T28144C C29095T G29383A TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_454774
 2020-03-27 2020-05-29
 Netherlands hCoV-19/Netherlands/Utrecht_10025/2020
 ATTAAA1- C241T C3037T C14408T C19170T G19509A A23403G C26313T GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_454792
 2020-03-27 2020-05-29
 Netherlands hCoV-19/Netherlands/NoordHolland_10043/2020
 ATTAAA1- C241T C1059T T1537C C3037T T13006C C14408T A23403G G24821T G25563T C25688T AAAAAA29898-

EPI_ISL_454956
 2020-03-27 2020-05-29
 China hCoV-19/Wuhan/HB-WH4-206/2020
 

EPI_ISL_455205
 2020-03-27 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_403/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7095T C14408T A16179G A23403G T27098C G28514T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455206
 2020-03-27 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_404/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7095T C14408T A16179G A23403G GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455429
 2020-03-27 2020-05-29
 Nigeria hCoV-19/Nigeria/OY008-CV29/2020
 ATTAAA1- C241T C1059T C3037T C14408T A23403G G25563T T29821C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_455440
 2020-03-27 2020-05-29
 Poland hCoV-19/Poland/PL_P27/2020
 C241T C1059T C3037T C3743T C14408T A23403G G25563T

EPI_ISL_455640
 2020-03-27 2020-06-01
 India hCoV-19/India/S4/2020
 C241T C3037T C14408T A23403G C24384A G28221T

EPI_ISL_455702
 2020-03-27 2020-06-01
 Vietnam hCoV-19/Vietnam/VNHN_3096/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_455703
 2020-03-27 2020-06-01
 Vietnam hCoV-19/Vietnam/VNHN_3085/2020
 C241T C3037T C14408T T19839C A23403G GGG28881AAC C28905T

EPI_ISL_455992
 2020-03-27 2020-06-01
 United States hCoV-19/USA/TX-EVTL149/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_456004
 2020-03-27 2020-06-01
 United States hCoV-19/USA/NY-NYUMC767/2020
 C241T C1059T C3037T C10851T C14408T A23403G G25563T

EPI_ISL_456006
 2020-03-27 2020-06-01
 United States hCoV-19/USA/NY-NYUMC769/2020
 C241T C1059T C3037T C14408T A23403G G25563T C26885T

EPI_ISL_456008
 2020-03-27 2020-06-01
 United States hCoV-19/USA/NY-NYUMC771/2020
 C241T C3037T C14408T C18457T C18877T A23403G G25563T T28339A

EPI_ISL_456010
 2020-03-27 2020-06-01
 United States hCoV-19/USA/NY-NYUMC773/2020
 C241T C1059T C3037T C14408T C18601T A23403G G25563T

EPI_ISL_456011
 2020-03-27 2020-06-01
 United States hCoV-19/USA/NY-NYUMC774/2020
 C241T C1059T C3037T C11916T C14408T C18998T A20553G A23403G G25563T T27384C G29540A

EPI_ISL_456013
 2020-03-27 2020-06-01
 United States hCoV-19/USA/NY-NYUMC776/2020
 C241T C1059T C3037T C14408T A20755C A23403G G25563T

EPI_ISL_456014
 2020-03-27 2020-06-01
 United States hCoV-19/USA/NY-NYUMC777/2020
 C241T C2003T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_456016
 2020-03-27 2020-06-01
 United States hCoV-19/USA/NY-NYUMC779/2020
 C241T C1059T C3037T C14408T C16616T G20125A A23403G G25563T

EPI_ISL_456018
 2020-03-27 2020-06-01
 United States hCoV-19/USA/NY-NYUMC781/2020
 C241T C1059T C3037T C10851T C14408T A23403G G25563T C29215T

EPI_ISL_456021
 2020-03-27 2020-06-01
 United States hCoV-19/USA/NY-NYUMC784/2020
 G45T C241T C1059T C3037T C10332T C11916T C14408T C18998T A23403G G25563T G29540A C29774T

EPI_ISL_456025
 2020-03-27 2020-06-01
 United States hCoV-19/USA/NY-NYUMC788/2020
 C241T C619T C1059T C3037T C14117T C14408T A14912G A23403G G25563T

EPI_ISL_456026
 2020-03-27 2020-06-01
 United States hCoV-19/USA/NY-NYUMC789/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_456028
 2020-03-27 2020-06-01
 United States hCoV-19/USA/NY-NYUMC792/2020
 C241T C1059T C3037T C13517T C14408T A23403G G25563T

EPI_ISL_456030
 2020-03-27 2020-06-01
 United States hCoV-19/USA/NY-NYUMC794/2020
 C241T CC1059TT C3037T C14408T A23403G G25563T

EPI_ISL_456032
 2020-03-27 2020-06-01
 United States hCoV-19/USA/NY-NYUMC796/2020
 C241T C1059T C3037T C14408T A23403G G25563T C26577G

EPI_ISL_456034
 2020-03-27 2020-06-01
 United States hCoV-19/USA/NY-NYUMC798/2020
 C241T C1059T C3037T C10851T C12789T C14408T A23403G G25563T

EPI_ISL_456036
 2020-03-27 2020-06-01
 United States hCoV-19/USA/NY-NYUMC800/2020
 C241T C1059T C3037T A10329G C14408T A23403G G25563T

EPI_ISL_456037
 2020-03-27 2020-06-01
 United States hCoV-19/USA/NY-NYUMC801/2020
 C241T C1059T C3037T C4113T C11916T C14408T T18567C C18998T A23403G G24197T G25563T G29540A

EPI_ISL_456038
 2020-03-27 2020-06-01
 United States hCoV-19/USA/NY-NYUMC802/2020
 C241T C1059T C3037T C14408T A23403G G25563T T26171A

EPI_ISL_456040
 2020-03-27 2020-06-01
 United States hCoV-19/USA/NY-NYUMC804/2020
 C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_456041
 2020-03-27 2020-06-01
 United States hCoV-19/USA/NY-NYUMC805/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_456043
 2020-03-27 2020-06-01
 United States hCoV-19/USA/NY-NYUMC807/2020
 C241T C1059T C3037T C8240T C14408T A23403G G25563T

EPI_ISL_456044
 2020-03-27 2020-06-01
 United States hCoV-19/USA/NY-NYUMC808/2020
 C241T A263G C3037T C14408T A23403G

EPI_ISL_456045
 2020-03-27 2020-06-01
 United States hCoV-19/USA/NY-NYUMC809/2020
 C241T C3037T C14408T A20268G A21137G A23403G

EPI_ISL_456047
 2020-03-27 2020-06-01
 United States hCoV-19/USA/NY-NYUMC811/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_456052
 2020-03-27 2020-06-01
 United States hCoV-19/USA/NY-NYUMC816/2020
 C241T C1059T C3037T C3294T C3397T C14408T C16616T A23403G G25563T

EPI_ISL_456055
 2020-03-27 2020-06-01
 United States hCoV-19/USA/NY-NYUMC819/2020
 C241T C3037T C14408T A23403G G25563T

EPI_ISL_456058
 2020-03-27 2020-06-01
 United States hCoV-19/USA/NY-NYUMC822/2020
 C241T C1059T C3037T C8937T A11430G C11956T C14408T A23403G G25563T TCACCGA29729-

EPI_ISL_456061
 2020-03-27 2020-06-01
 United States hCoV-19/USA/NY-NYUMC825/2020
 C241T C1059T C3037T C14408T A20755C A23403G G25563T

EPI_ISL_456065
 2020-03-27 2020-06-01
 United States hCoV-19/USA/NY-NYUMC829/2020
 C241T C619T C1059T C3037T C14408T A14912G A23403G G25563T

EPI_ISL_456234
 2020-03-27 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1624/2020
 C241T C3037T C6543T C14408T A20268G A23403G G29734C

EPI_ISL_456261
 2020-03-27 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1809/2020
 C241T C1059T C3037T C14408T C16260T A23403G G25563T C28821A

EPI_ISL_456262
 2020-03-27 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1814/2020
 C241T C1059T C3037T C14408T C16260T A23403G G25563T C28821A

EPI_ISL_456263
 2020-03-27 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1816/2020
 C241T C1059T C3037T C14408T C16260T A23403G G25563T C28821A

EPI_ISL_456264
 2020-03-27 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1817/2020
 C241T C1059T C3037T C14408T C16260T A23403G G25563T C28821A

EPI_ISL_456265
 2020-03-27 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1818/2020
 C241T C1059T C3037T C14408T C16260T A23403G G25563T C28821A

EPI_ISL_456266
 2020-03-27 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1821/2020
 C241T C1059T C3037T C14408T C16260T A23403G G25563T C28821A

EPI_ISL_456267
 2020-03-27 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1822/2020
 C241T C1059T C3037T C14408T C16260T A23403G G25563T

EPI_ISL_456268
 2020-03-27 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1823/2020
 C241T C1059T C3037T C14408T C16260T A23403G G25563T C28821A

EPI_ISL_456270
 2020-03-27 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1825/2020
 C241T C1059T C3037T C14408T C16260T A23403G G25563T C28821A

EPI_ISL_456271
 2020-03-27 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1826/2020
 C241T C1059T C3037T C14408T C16260T A23403G G25563T C28821A

EPI_ISL_456272
 2020-03-27 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1827/2020
 C241T C1059T C3037T C14408T C16260T A23403G G25563T C28821A

EPI_ISL_456273
 2020-03-27 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1828/2020
 C241T C1059T C3037T C5239T C14408T C16260T A23403G C28821A

EPI_ISL_456889
 2020-03-27 2020-06-02
 United Kingdom hCoV-19/Scotland/CVR853/2020
 A2196C G11083T C14805T C17172A T17247C G26144T

EPI_ISL_456896
 2020-03-27 2020-06-02
 United Kingdom hCoV-19/Scotland/EDB2730/2020
 C241T C3037T C10798A C13862T C14408T A23403G C28836T

EPI_ISL_456897
 2020-03-27 2020-06-02
 United Kingdom hCoV-19/Scotland/EDB2742/2020
 C241T C3037T C9223T C14408T A23403G

EPI_ISL_456901
 2020-03-27 2020-06-02
 United Kingdom hCoV-19/Scotland/EDB285/2020
 C241T C3037T C14408T A23403G C25433T

EPI_ISL_456903
 2020-03-27 2020-06-02
 United Kingdom hCoV-19/Scotland/EDB290/2020
 C241T C3037T C14408T A23403G C25433T

EPI_ISL_456905
 2020-03-27 2020-06-02
 United Kingdom hCoV-19/Scotland/EDB291/2020
 C241T C3037T C14408T A23403G C25433T

EPI_ISL_456906
 2020-03-27 2020-06-02
 United Kingdom hCoV-19/Scotland/EDB295/2020
 C241T C3037T C14408T A23403G C25433T

EPI_ISL_457168
 2020-03-27 2020-06-02
 United Kingdom hCoV-19/England/EXET-135DDD/2020
 ATG1605- C20270T C28087T A29683T

EPI_ISL_457171
 2020-03-27 2020-06-02
 United Kingdom hCoV-19/England/EXET-135E34/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T

EPI_ISL_458180
 2020-03-27 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0327210/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3092T C4002T G10097A C11339T C13536T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458181
 2020-03-27 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0327211/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A23894T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458182
 2020-03-27 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0327212/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8394T G9923A C14408T C15277T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458183
 2020-03-27 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0327213/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458184
 2020-03-27 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0327214/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A15192G G18007A A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458185
 2020-03-27 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0327215/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T C9891T G10097A C13536T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458186
 2020-03-27 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0327216/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3828T G11083T C14408T C15324T A23403G T24811A A28765G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_459859
 2020-03-27 2020-06-04
 Chile hCoV-19/Chile/Melipilla-32205/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_459874
 2020-03-27 2020-06-04
 Canada hCoV-19/Canada/ON_QGLO-017/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C2416T C3037T C14408T A23403G G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_459875
 2020-03-27 2020-06-04
 Canada hCoV-19/Canada/ON_QGLO-018/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C10507T C14408T C18877T A23403G G25563T TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856CT

EPI_ISL_460108 MT520183
 2020-03-27 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00208/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C2416T C3037T A5725G C14408T A23403G C24096A G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_460110 MT520185
 2020-03-27 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00485/2020
 ATTAAAGGTTTATACCTTCCCAG1- G105T C241T C3037T C14408T C18877T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460113 MT520188
 2020-03-27 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00184/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C2416T C3037T C14408T A23403G G25563T G26233T GATT27378- AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_460142 MT520217
 2020-03-27 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00210/2020
 ATTAAA1- C241T C3037T C14408T C18877T A23403G G25563T C25702T G28904T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_460156 MT520231
 2020-03-27 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00502/2020
 ATTAAA1- C241T C2003T C2416T C2453T C3037T T10216C C14408T A23403G G25563T G26233T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_460185 MT520260
 2020-03-27 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00488/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C2416T C3037T C14408T A23403G G25563T G26233T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460204 MT520279
 2020-03-27 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00486/2020
 ATTAAAGGT1- C241T C2416T C3037T G8131T G10631T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_460229 MT520304
 2020-03-27 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00185/2020
 ATTAAA1- C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_460242 MT520317
 2020-03-27 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00206/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C1059T C3037T C14408T A23403G G25563T G28077T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460258 MT520333
 2020-03-27 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00501/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C2416T C3037T C14408T A23403G G25563T G26233T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_460283 MT520358
 2020-03-27 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00170/2020
 ATTA1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAA29886-

EPI_ISL_460286 MT520361
 2020-03-27 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00484/2020
 ATTAAA1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_460288 MT520363
 2020-03-27 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00203/2020
 ATTAAA1- C241T C2416T C3037T A6818G C14408T A23403G G23909T G25563T AAAAAAAAAAAAAAAAAAAA29884-

EPI_ISL_460306 MT520381
 2020-03-27 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00489/2020
 ATTAAA1- C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_460322 MT520397
 2020-03-27 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00214/2020
 ATTAAA1- C241T C2416T C3037T C14408T A23403G G25563T G26233T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_460329 MT520404
 2020-03-27 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00188/2020
 ATTA1- G105T C241T C3037T C14408T C17373T C18877T A23403G G25563T AAAAAAAAAAAAAAAA29888-

EPI_ISL_460343 MT520418
 2020-03-27 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00492/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T G1890T C2416T C3037T C14408T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460362 MT520437
 2020-03-27 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00183/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C1059T T2884C C3037T G11083T G11534A C11916T C14408T C18998T A23403G G25563T G29540A AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_460400 MT520475
 2020-03-27 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00497/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C2416T C3037T A5725G C14408T A23403G C24096A G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_460410 MT520485
 2020-03-27 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00200/2020
 ATTAAA1- G105T C241T C3037T C14408T C18877T G19962A A23403G G25563T AAAAAAAAAAAAA29891-

EPI_ISL_460427 MT520502
 2020-03-27 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00495/2020
 ATTAAA1- C241T C2416T C3037T C14408T C15324T A23403G C23996T G25563T AAAAAAAAAAAAAAAAAAA29885-

EPI_ISL_460437 MT520512
 2020-03-27 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00202/2020
 ATTAAA1- C241T C1288T C2416T C3037T C6541T C14408T A23403G G25563T G26233T AAAAAAAAAA29894-

EPI_ISL_460445 MT520520
 2020-03-27 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00505/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C2416T C3037T T8665G C14408T A23403G G25563T G26233T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460459 MT520534
 2020-03-27 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00499/2020
 ATTAAA1- C241T C2416T C3037T C8228T A11782G C14408T T19026G A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_460468 MT520543
 2020-03-27 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00199/2020
 ATTAAA1- C241T C2416T C3037T C4155A C14408T A23403G G25563T T26035C AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_460471 MT520546
 2020-03-27 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00205/2020
 ATTAAA1- C241T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_460673
 2020-03-27 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_500/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C478T C3037T G12550A C12896T C14408T A20268G C20740A A23403G G29734C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460693
 2020-03-27 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_520/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G208T C241T C1059T C3037T T13006C C14408T G20433T A23403G G25563T C25688T G29751T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460699
 2020-03-27 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_526/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C11109T C14408T A23403G G25563T C26645T G27382T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460717
 2020-03-27 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_547/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460737
 2020-03-27 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_573/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460754
 2020-03-27 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_590/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460755
 2020-03-27 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_591/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A24862G T26187C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461011
 2020-03-27 2020-06-06
 Netherlands hCoV-19/Netherlands/Limburg_23/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C21697A A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461018
 2020-03-27 2020-06-06
 Netherlands hCoV-19/Netherlands/Limburg_30/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C854T G1440A G2891A C4655T C6982T G8422A C22323T C27804T C29546A GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461264
 2020-03-27 2020-06-06
 Netherlands hCoV-19/Netherlands/Zeeland_26/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T658C C3037T C5051T C14408T A23403G A24862G C28629T C29253T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461422
 2020-03-27 2020-06-06
 United States hCoV-19/USA/WA-UW-3904/2020
 ATTAAAGGTTTATACCTT1- C36T A6693G C8782T C13115T C17747T A17858G C18060T T28144C TG29867AA C29870A -29904AAAAAAAAAAAAAAAAAA

EPI_ISL_461424
 2020-03-27 2020-06-06
 United States hCoV-19/USA/ID-UW-4376/2020
 TTA2CCT A6T C241T T400C T833C C1059T C3037T C5934T C14408T A23403G G25563T C27964T GG29861AA G29864A TG29867AA C29870A

EPI_ISL_461430
 2020-03-27 2020-06-06
 United States hCoV-19/USA/WA-UW-4746/2020
 ATTAAAGG1- ATACCTTCCCAGGTAACAAACC12- C36T C241T C1059T C3037T G4975T C14408T A23403G G25523T G25563T T27869C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_461705
 2020-03-27 2020-06-06
 United Kingdom hCoV-19/Scotland/CVR837/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A24388T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_461706
 2020-03-27 2020-06-06
 United Kingdom hCoV-19/Scotland/EDB286/2020
 C241T C3037T C14408T A23403G C25433T

EPI_ISL_461707
 2020-03-27 2020-06-06
 United Kingdom hCoV-19/Scotland/EDB294/2020
 C241T C3037T C14408T A23403G C25433T

EPI_ISL_461708
 2020-03-27 2020-06-06
 United Kingdom hCoV-19/Scotland/EDB306/2020
 C241T C3037T C10798A C13862T C14408T A23403G G28361C C28836T

EPI_ISL_462171
 2020-03-27 2020-06-08
 Belgium hCoV-19/Belgium/VJB-0327317/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6507G C14408T A23403G G29227T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462172
 2020-03-27 2020-06-08
 Belgium hCoV-19/Belgium/DAL-0327318/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2710T C3037T C11094T C14408T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462173
 2020-03-27 2020-06-08
 Belgium hCoV-19/Belgium/VA-0327319/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C14408T A23403G G25049T G25563T T27585C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462174
 2020-03-27 2020-06-08
 Belgium hCoV-19/Belgium/BM-0327320/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1666C C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462175
 2020-03-27 2020-06-08
 Belgium hCoV-19/Belgium/AF-0327321/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462198
 2020-03-27 2020-06-08
 Belgium hCoV-19/Belgium/MR-0327344/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4582T A11839G C14408T T19839C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462199
 2020-03-27 2020-06-08
 Belgium hCoV-19/Belgium/CF-0327345/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A13947T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462200
 2020-03-27 2020-06-08
 Belgium hCoV-19/Belgium/VME-0327346/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462202
 2020-03-27 2020-06-08
 Belgium hCoV-19/Belgium/FCA-0327348/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14358T C14805T T17247C C20312T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462203
 2020-03-27 2020-06-08
 Belgium hCoV-19/Belgium/GGO-0327349/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462207
 2020-03-27 2020-06-08
 Belgium hCoV-19/Belgium/DV-0327353/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4320T C10802T G11083T C14408T C21590T A23403G G23405A G25563T C25688T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462223
 2020-03-27 2020-06-08
 Belgium hCoV-19/Belgium/DAA-0327369/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A C7011T G20527A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462244
 2020-03-27 2020-06-08
 Belgium hCoV-19/Belgium/HLE-0327390/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A G17122T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462349
 2020-03-27 2020-06-08
 Singapore hCoV-19/Singapore/231/2020
 C2470T A8381R G11083T C14805T T17247C C21789T G26144T AAAAAAAAAAAA29892-

EPI_ISL_462468
 2020-03-27 2020-06-08
 Bosnia and Herzegovina hCoV-19/Bosnia and Herzegovina/ChVir7366/2020
 ATTAAAGGTTTAT1- C241T C3037T C14408T C15324T G20164T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_462469
 2020-03-27 2020-06-08
 Bosnia and Herzegovina hCoV-19/Bosnia and Herzegovina/ChVir7367/2020
 ATTAAAGGTTT1- C241T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_462958
 2020-03-27 2020-06-08
 United States hCoV-19/USA/WY-WYPHL-00066/2020
 ATTA1- C241T C1059T C3037T C11916T C14408T C16611T A20465G A23403G G25563T AA29902-

EPI_ISL_463005 MT499219
 2020-03-27 2020-05-20
 Tunisia SARS-CoV-2/human/TUN/COV0425/2020
 TTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC2- T41C C241T C2416T C3037T G8371T C14408T A23403G G25563T TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_464113
 2020-03-27 2020-06-11
 South Africa hCoV-19/SouthAfrica/Tygerberg_02/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A20268G A23403G C28854T AGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29687-

EPI_ISL_464114
 2020-03-27 2020-06-11
 South Africa hCoV-19/SouthAfrica/Tygerberg_03/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A20268G A23403G C28854T GGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29777-

EPI_ISL_465680
 2020-03-27 2020-06-11
 Canada hCoV-19/Canada/Qc-L00240594/2020
 ATT1- C241T C1059T C3037T C14408T A15523G A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_465681
 2020-03-27 2020-06-11
 Canada hCoV-19/Canada/Qc-L00240642/2020
 ATT1- C241T C1912T C3037T C14408T C23191T A23403G C27046T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_465682
 2020-03-27 2020-06-11
 Canada hCoV-19/Canada/Qc-L00240666/2020
 ATT1- C241T C1059T C3037T C11916T G12322A C14408T C18998T A23403G G25563T G29540A AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_465685
 2020-03-27 2020-06-11
 Canada hCoV-19/Canada/Qc-L00240788/2020
 ATT1- C241T C1059T C3037T C14408T A23403G G25217T G25563T C29835T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_465686
 2020-03-27 2020-06-11
 Canada hCoV-19/Canada/Qc-L00240796/2020
 ATT1- T490A C3177T C8782T A11600G T18736C C24034T T26729C C27635T G28077C T28144C A29567C A29700G AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_465687
 2020-03-27 2020-06-11
 Canada hCoV-19/Canada/Qc-L00240804/2020
 ATT1- C241T G701T C1059T C3037T C6896T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_465688
 2020-03-27 2020-06-11
 Canada hCoV-19/Canada/Qc-L00240846/2020
 ATT1- C241T C3037T C14408T C15324T A23403G A23933G C25433T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_465689
 2020-03-27 2020-06-11
 Canada hCoV-19/Canada/Qc-L00240851/2020
 ATT1- C241T C3037T C14408T C15324T A23403G A23933G C25433T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_465690
 2020-03-27 2020-06-11
 Canada hCoV-19/Canada/Qc-L00240866/2020
 ATT1- C241T C1059T C1912T C3037T C14408T A23403G G25563T C29503T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_465691
 2020-03-27 2020-06-11
 Canada hCoV-19/Canada/Qc-L00240891/2020
 ATT1- C241T C1059T C3037T C14408T A23403G G25217T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_465692
 2020-03-27 2020-06-11
 Canada hCoV-19/Canada/Qc-L00240893/2020
 ATT1- C241T G701T C1059T C3037T C6896T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_465693
 2020-03-27 2020-06-11
 Canada hCoV-19/Canada/Qc-L00240947/2020
 ATT1- C241T C3037T C14408T G15380T A20268G A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_465694
 2020-03-27 2020-06-11
 Canada hCoV-19/Canada/Qc-L00241007/2020
 ATT1- C140T A1515G A6925G C9223T G12565T C14805T C16073T T17247C G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_465695
 2020-03-27 2020-06-11
 Canada hCoV-19/Canada/Qc-L00241074/2020
 ATT1- C241T C1059T C3037T C14408T C17528Y A23403G G25217T G25563T C29835T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_465696
 2020-03-27 2020-06-11
 Canada hCoV-19/Canada/Qc-L00241102/2020
 ATT1- C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_465698
 2020-03-27 2020-06-11
 Canada hCoV-19/Canada/Qc-L00241115/2020
 ATT1- C241T C1059T C3037T G11083T C14408T A21137R A23403G G25217T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_465699
 2020-03-27 2020-06-11
 Canada hCoV-19/Canada/Qc-L00241158/2020
 ATT1- C241T C635Y C1059T C3037T C4331Y A12964G C14408T C23202Y A23403G C25521T G25563T G28001K AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_465701
 2020-03-27 2020-06-11
 Canada hCoV-19/Canada/Qc-L00241251/2020
 ATT1- C241T C3037T C14408T C15324T G15463T A23403G C25433T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_465702
 2020-03-27 2020-06-11
 Canada hCoV-19/Canada/Qc-L00241319/2020
 ATT1- C241T C3037T C14408T A23403G C24213Y C27046T GGG28881AAC C29754Y AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_465703
 2020-03-27 2020-06-11
 Canada hCoV-19/Canada/Qc-L00241349/2020
 ATT1- C241T C3037T C14408T C15280T C15324T A23403G G26143K T28137C C29555T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_465868
 2020-03-27 2020-06-11
 United Kingdom hCoV-19/England/20140002404/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_465989
 2020-03-27 2020-06-11
 United Kingdom hCoV-19/England/20144021904/2020
 C241T C3037T T8777C G10097A C14408T A23403G C23731T GGG28881AAC

EPI_ISL_465994
 2020-03-27 2020-06-11
 United Kingdom hCoV-19/England/20144023304/2020
 G11083T C14805T T17247C T19266C C25416T G26144T

EPI_ISL_465995
 2020-03-27 2020-06-11
 United Kingdom hCoV-19/England/20144023504/2020
 C241T G246K G2759K C3037T C5173T C14408T G15652K G17280S G21776K A23403G T25264Y G25266K GGG28881AAC

EPI_ISL_466046
 2020-03-27 2020-06-11
 United Kingdom hCoV-19/England/20146064004/2020
 C241T C3037T C14408T T15939C A23403G GGG28881AAC

EPI_ISL_467441
 2020-03-27 2020-06-14
 South Africa hCoV-19/South Africa/KRISP-0035/2020
 ATTAAAGG1- C241T C3037T C14408T A23403G ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_467442
 2020-03-27 2020-06-14
 South Africa hCoV-19/South Africa/KRISP-0040/2020
 ATTAAAGGTTTA1- C241T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_467809
 2020-03-27 2020-06-15
 United States hCoV-19/USA/CA-CSMC1/2020
 C241T C1059T C3037T T8248A C14408T A23403G G25563T

EPI_ISL_467967
 2020-03-27 2020-06-16
 United States hCoV-19/USA/CA-SR0440/2020
 C241T C1997T C3037T C4582T C11102T C14408T A20268G A23403G

EPI_ISL_468446 MT628174
 2020-03-27 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1497/2020
 G8K C8782T G13435R C17747T A17858G C18060T A24694T T28144C C29095T

EPI_ISL_468447 MT628175
 2020-03-27 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1498/2020
 ATTAAAGGTTTATACCT1- C241T C3037T A9244R C14408T A23403G C23802Y C27577M TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_468525 MT628248
 2020-03-27 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1596/2020
 C241T C3037T G7452T C8389T C10741Y C14408T A23403G T25520A G25563T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_468526 MT628249
 2020-03-27 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1597/2020
 C241T C1284Y C3037T G7452T C8389T C10741Y G13249K C14408T A23403G T25520A G25563T AAAAAAAAAAAAA29891-

EPI_ISL_469276
 2020-03-27 2020-06-18
 United Arab Emirates hCoV-19/United Arab Emirates/L0287/2020
 C884T G1397A G8653T G11083T A25980C T28688C G29742T

EPI_ISL_469280
 2020-03-27 2020-06-18
 United Arab Emirates hCoV-19/United Arab Emirates/L6841/2020
 G11230T A25443G T28144C G28167A G28878A G29742A

EPI_ISL_470539
 2020-03-27 2020-06-18
 Russia hCoV-19/Russia/CRIE130014/2020
 ATTAAAGGTTTA1- C241T C1059T C3037T C14408T A23403G G25563T A27872T TATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29791-

EPI_ISL_470863
 2020-03-27 2020-06-19
 Australia hCoV-19/Australia/WA46/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_471180
 2020-03-27 2020-06-19
 United States hCoV-19/USA/WI-WSLH-200014/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T G29690T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471201
 2020-03-27 2020-06-19
 United States hCoV-19/USA/WI-WSLH-200036/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G15760A A17713G C18171A A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471203
 2020-03-27 2020-06-19
 United States hCoV-19/USA/WI-WSLH-200038/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4540T C8782T G16381A T17877C C20316T G25500T T28144C G28878A G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471260
 2020-03-27 2020-06-19
 United States hCoV-19/USA/WI-WSLH-200096/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471262
 2020-03-27 2020-06-19
 United States hCoV-19/USA/WI-WSLH-200098/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T15354C C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471967
 2020-03-27 2020-06-23
 United Kingdom hCoV-19/England/EXET-13737F/2020
 C556T A2480G C2558T G11083T C14805T G26144T

EPI_ISL_475574
 2020-03-27 2020-06-23
 United States hCoV-19/USA/CA-CSMC10/2020
 A1079C G1397A T7225C C9319T G11083T C19862T T27384C T28688C G29742T

EPI_ISL_475629
 2020-03-27 2020-06-23
 United States hCoV-19/USA/CA-CSMC2/2020
 C241T C3037T C14408T C18877T A23234C A23403G G25563T

EPI_ISL_475640
 2020-03-27 2020-06-23
 United States hCoV-19/USA/CA-CSMC3/2020
 C241T C1059T C3037T T13575C C14408T T16506C A23403G C25466T G25563T

EPI_ISL_475651
 2020-03-27 2020-06-23
 United States hCoV-19/USA/CA-CSMC4/2020
 C241T C3037T A5570G C14408T A21949C A23403G GGG28881AAC

EPI_ISL_475673
 2020-03-27 2020-06-23
 United States hCoV-19/USA/CA-CSMC6/2020
 A12G C241T C1059T C3037T C14408T A23403G G25563T C29218T

EPI_ISL_475684
 2020-03-27 2020-06-23
 United States hCoV-19/USA/CA-CSMC7/2020
 C241T C882T C1684T C3037T A11600G C14408T C18877T A23403G G25563T

EPI_ISL_475695
 2020-03-27 2020-06-23
 United States hCoV-19/USA/CA-CSMC8/2020
 C241T C379A C1059T C3037T T9961C C14408T A23403G G25563T

EPI_ISL_475706
 2020-03-27 2020-06-23
 United States hCoV-19/USA/CA-CSMC9/2020
 C241T C1059T C3037T C14408T T22939C A23403G G25563T

EPI_ISL_475707
 2020-03-27 2020-06-23
 United States hCoV-19/USA/CA-CSMC90/2020
 C241T C1059T G3665T C4347T G4352T C5497T T5653C A6635G G7787T T8023C T8477C G12177T C15315T C15469T G17561T T22170C A23403G G25563T A28466T A29419C

EPI_ISL_475708
 2020-03-27 2020-06-23
 United States hCoV-19/USA/CA-CSMC91/2020
 G1212C T4531C C8782T C18060T G22661T T28144C

EPI_ISL_475718 MT655132
 2020-03-27 2020-06-23
 Spain SARS-CoV-2/human/ESP/HUD-65067673/2020
 ATTAAAGGTTTATACCTTCCCAGG1- A2480G C2558T G11083T C14805T C17934T G26144T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_475721 MT655135
 2020-03-27 2020-06-23
 Spain SARS-CoV-2/human/ESP/HUD-98203801/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- T6394C C8782T C17470T C26088T G26709A T28144C TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_475774
 2020-03-27 2020-06-25
 Austria hCoV-19/Austria/CeMM0298/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6638Y C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475775
 2020-03-27 2020-06-25
 Austria hCoV-19/Austria/CeMM0299/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T9477A C14805T C16332Y C21304A G25979T G26211K T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475776
 2020-03-27 2020-06-25
 Austria hCoV-19/Austria/CeMM0300/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475850
 2020-03-27 2020-06-25
 Austria hCoV-19/Austria/CeMM0422/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A C7011T G25593C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475884
 2020-03-27 2020-06-25
 Austria hCoV-19/Austria/CeMM0481/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7728T C14408T A23403G C27881T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475887
 2020-03-27 2020-06-25
 Austria hCoV-19/Austria/CeMM0514/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T C26022Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475916
 2020-03-27 2020-06-25
 Austria hCoV-19/Austria/CeMM0566/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C C17410T C27881T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475921
 2020-03-27 2020-06-25
 Austria hCoV-19/Austria/CeMM0572/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G15957T C18877T A23403G G24197T G25563T C26735T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476143
 2020-03-27 2020-06-25
 Sweden hCoV-19/Sweden/20-08533/2020
 C241T C1710T C3037T C14408T G22583A A23403G C26801T

EPI_ISL_476144
 2020-03-27 2020-06-25
 Sweden hCoV-19/Sweden/20-08608/2020
 C241T C3037T T7171C C14408T A23403G GGG28881AAC C28887T C29614T

EPI_ISL_476786
 2020-03-27 2020-06-25
 United States hCoV-19/USA/CA-CZB-1769/2020
 A1- C10956T T15922Y C28253T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_476827
 2020-03-27 2020-06-26
 Benin hCoV-19/Benin/1092/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C92S C241T C1059T T2339W C3037Y C3096Y G9950T C14408T C15324T T17990K A22404T G22468T A23403G T23569Y T28144Y G28167R G28878R TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_477623
 2020-03-27 2020-06-29
 Hungary hCoV-19/Hungary/US-482w/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477817
 2020-03-27 2020-06-30
 United Kingdom hCoV-19/England/CAMB-78522/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G11083T C14805T G26144T C29525- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478411
 2020-03-27 2020-06-30
 United Kingdom hCoV-19/England/LOND-D6BA8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G11083T C14805T G25311T G26144T ATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29815-

EPI_ISL_478412
 2020-03-27 2020-06-30
 United Kingdom hCoV-19/England/LOND-D6BB7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2706T C3037T C14408T C14724T A20276G A23403G GGG28881AAC ATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29815-

EPI_ISL_478413
 2020-03-27 2020-06-30
 United Kingdom hCoV-19/England/LOND-D6BC6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T22912G A23403G G25429T ATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29815-

EPI_ISL_478414
 2020-03-27 2020-06-30
 United Kingdom hCoV-19/England/LOND-D6BD5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C913T C3037T C14408T A23403G GGG28881AAC ATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29815-

EPI_ISL_478591
 2020-03-27 2020-06-30
 United Kingdom hCoV-19/England/NORT-284D74/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A C10507T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478592
 2020-03-27 2020-06-30
 United Kingdom hCoV-19/England/NORT-284D83/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G G22225T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478593
 2020-03-27 2020-06-30
 United Kingdom hCoV-19/England/NORT-284D92/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9996T G10097A T13216G C14408T A19960G A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478594
 2020-03-27 2020-06-30
 United Kingdom hCoV-19/England/NORT-284DB0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C203T G11083T T11107C C14805T G16206T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478596
 2020-03-27 2020-06-30
 United Kingdom hCoV-19/England/NORT-284E80/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T G26144T A29371G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478669 MT675956
 2020-03-27 2020-06-29
 Turkey SARS-CoV-2/human/TUR/KOC-IST-B303/2020
 ATTAAAGGTTTATA1- C241T C2113T C3037T C7765T C14408T C17690T C18877T T22126G A23403G G25563T -29854V AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_479616
 2020-03-27 2020-06-30
 Italy hCoV-19/Italy/FVG-ICGEB_bal1A/2020
 ATTAAAGG1- C241T C3037T C5284T C14408T A23403G AAAAAAAAAAAAAAAAAA29886-

EPI_ISL_479617
 2020-03-27 2020-06-30
 Italy hCoV-19/Italy/FVG-ICGEB_bal1B/2020
 A1- C241T C3037T C5284T C14408T A23403G AAAAAAAAAAA29893-

EPI_ISL_479627
 2020-03-27 2020-07-01
 Canada hCoV-19/Canada/NB-206/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T C18904T A23403G G25606T ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_479630
 2020-03-27 2020-07-01
 Canada hCoV-19/Canada/NB-214/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25429T ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_479631
 2020-03-27 2020-07-01
 Canada hCoV-19/Canada/NB-215/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25429T ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_479972
 2020-03-27 2020-07-01
 Japan hCoV-19/Japan/PG-0295/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C313T C3037T C14408T A23403G GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_479973
 2020-03-27 2020-07-01
 Japan hCoV-19/Japan/PG-0296/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G GGG28881AAC TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_479992
 2020-03-27 2020-07-01
 Japan hCoV-19/Japan/PG-0317/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C1059T C3037T C14408T A23403G G25563T G26730T C29708T TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_479993
 2020-03-27 2020-07-01
 Japan hCoV-19/Japan/PG-0318/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C1059T C3037T C14408T A23403G G25563T G26730T C29708T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_479994
 2020-03-27 2020-07-01
 Japan hCoV-19/Japan/PG-0319/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C1059T C3037T C14408T A23403G G25563T G26730T C29708T TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_480018
 2020-03-27 2020-07-01
 Japan hCoV-19/Japan/PG-0346/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T G4300T C14408T A23403G G25249T G25563C GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480019
 2020-03-27 2020-07-01
 Japan hCoV-19/Japan/PG-0347/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C313T C3037T G4300T C14408T A23403G G25249T G25563C GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_480020
 2020-03-27 2020-07-01
 Japan hCoV-19/Japan/PG-0348/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G GGG28881AAC TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_480023
 2020-03-27 2020-07-01
 Japan hCoV-19/Japan/PG-0351/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C241T G1738T C3037T C14408T G16221T A17829T A23403G A26530G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_480025
 2020-03-27 2020-07-01
 Japan hCoV-19/Japan/PG-0353/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C9430T G9652T C14408T G22199T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480086
 2020-03-27 2020-07-01
 Japan hCoV-19/Japan/PG-0418/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- G3179A C6982T C8782T G26713T T28144C C29739T TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_480087
 2020-03-27 2020-07-01
 Japan hCoV-19/Japan/PG-0419/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- G3179A C6982T C8782T G26713T T28144C C29739T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480118
 2020-03-27 2020-07-01
 Japan hCoV-19/Japan/PG-0457/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C6312A C13730T C17678T T19785C C23929T C26425T C28311T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_480180
 2020-03-27 2020-07-01
 Japan hCoV-19/Japan/PG-0522/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T G1738T C3037T C14408T G16221T A17829T A23403G A26530G ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480181
 2020-03-27 2020-07-01
 Japan hCoV-19/Japan/PG-0523/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCT1- C241T C3037T C14408T G16221T A17829T A23403G A26530G ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_481262
 2020-03-27 2020-07-03
 Germany hCoV-19/Germany/BY-RKI-N-0003/2020
 C241T C3037T G5699R T8426Y A11755G G13993T C14408T C23127T A23403G A24453R C25614T C27046T GGG28881AAC

EPI_ISL_482320
 2020-03-27 2020-07-03
 United States hCoV-19/USA/OR-PROV-038/2020
 G1440A G2891A G3892A C10507T

EPI_ISL_482321
 2020-03-27 2020-07-03
 United States hCoV-19/USA/OR-PROV-039/2020
 C8782T C9565T C15240T C17747T A17858G C18060T C21774T T28144C

EPI_ISL_482322
 2020-03-27 2020-07-03
 United States hCoV-19/USA/OR-PROV-040/2020
 C241T C3037T C13665A C14408T A23403G C28714T GGG28881AAC

EPI_ISL_482455
 2020-03-27 2020-07-03
 United States hCoV-19/USA/OR-PROV-220/2020
 C241T C3037T C11563T C14408T C18877T C21058T A23403G G25563T

EPI_ISL_482456
 2020-03-27 2020-07-03
 United States hCoV-19/USA/OR-PROV-221/2020
 G11083T C14805T G26144T G27415A TT27760AC

EPI_ISL_482458
 2020-03-27 2020-07-03
 United States hCoV-19/USA/OR-PROV-223/2020
 C241T C1059T C3037T A6889G C9857T C14408T G19711A A23403G G25563T

EPI_ISL_482460
 2020-03-27 2020-07-03
 United States hCoV-19/USA/OR-PROV-225/2020
 C241T C1059T C3037T C14408T A23403G G24794A G25302T G25563T G27758T

EPI_ISL_483088
 2020-03-27 2020-07-07
 Australia hCoV-19/Australia/SAP291/2020
 ATTA1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T

EPI_ISL_483092
 2020-03-27 2020-07-07
 Australia hCoV-19/Australia/SAP309/2020
 A1- C1716T G11083T C14805T T17247C G26144T G29742T

EPI_ISL_483093
 2020-03-27 2020-07-07
 Australia hCoV-19/Australia/SAP310/2020
 ATTAAA1- G11083T C14805T T17247C G26144T G29742T

EPI_ISL_483101
 2020-03-27 2020-07-07
 Australia hCoV-19/Australia/SAP321/2020
 ATTA1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T

EPI_ISL_483105
 2020-03-27 2020-07-07
 Australia hCoV-19/Australia/SAP327/2020
 ATTA1- C241T AAGTCATTT686- C1059T C3037T C7043T C14408T G19656T A23403G G25563T C26408T A26433G

EPI_ISL_483108
 2020-03-27 2020-07-07
 Australia hCoV-19/Australia/SAP330/2020
 A1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T AA29902-

EPI_ISL_483109
 2020-03-27 2020-07-07
 Australia hCoV-19/Australia/SAP331/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T T833C C1059T C3037T C14408T A23403G C25047T G25563T C27964T C29774T

EPI_ISL_483304
 2020-03-27 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0689-SAN/2020
 ATTAAA1- C241T C1059T C1887T C3037T C14408T A23403G G25563T

EPI_ISL_483305
 2020-03-27 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0690-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T A20268G A23403G T24076C C28854T

EPI_ISL_483321
 2020-03-27 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0718-SAN/2020
 ATTA1- C241T C1059T C1887T C3037T C5956T C14408T A17615G A23403G G25563T

EPI_ISL_483322
 2020-03-27 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0719-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_483323
 2020-03-27 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0721-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C1059T C3037T A8252G C14408T A23403G G25563T

EPI_ISL_483610
 2020-03-27 2020-07-08
 Singapore hCoV-19/Singapore/587/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T A5353G C14408T A23403G G25429T AAAAAAAAAAAA29892-

EPI_ISL_483617
 2020-03-27 2020-07-08
 Singapore hCoV-19/Singapore/594/2020
 ATTA1- C241T C1059T C3037T C14408T G16935T A23403G G25563T G28368A AAAAAAAAAAAA29892-

EPI_ISL_484059
 2020-03-27 2020-07-08
 United Kingdom hCoV-19/England/GSTT-265DAA0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25429T GTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29810-

EPI_ISL_484715
 2020-03-27 2020-07-08
 United States hCoV-19/USA/MI-UM-2006S000858/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G4720T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484770
 2020-03-27 2020-07-08
 United States hCoV-19/USA/MI-UM-2006S000960/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C11916T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485926
 2020-03-27 2020-07-10
 United States hCoV-19/USA/CT-UW-2671/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C36T C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_485927
 2020-03-27 2020-07-10
 United States hCoV-19/USA/CT-UW-2674/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAA1- C241T C1059T C3037T T8883C TT8885AA C11653T C14408T A19173C A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_485929
 2020-03-27 2020-07-10
 United States hCoV-19/USA/CT-UW-3085/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T C3037T C14408T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_485932
 2020-03-27 2020-07-10
 United States hCoV-19/USA/CT-UW-3104/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGA1- C75Y C241T C3037T C14408T C18877T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_485933
 2020-03-27 2020-07-10
 United States hCoV-19/USA/CT-UW-3106/2020
 ATTAAAGGTTT1- C36T C66T C241T C1059T C3037T C6196T C14408T A23403G G25563T -29904AAAAAAAAAAAAAAAA

EPI_ISL_485934
 2020-03-27 2020-07-10
 United States hCoV-19/USA/CT-UW-3108/2020
 ATTAAAGGTTT1- AAC34TTT C241T C1059T C3037T C6033T C14408T C21575T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_485936
 2020-03-27 2020-07-10
 United States hCoV-19/USA/CT-UW-3118/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- AC35WT C241T C3037T C14408T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_485938
 2020-03-27 2020-07-10
 United States hCoV-19/USA/CT-UW-3120/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGT1- C241T C1059T C3037T C14408T A23403G G25563T GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_485942
 2020-03-27 2020-07-10
 United States hCoV-19/USA/CT-UW-3127/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A31T C36T C241T C1059T C3037T C14408T A23403G G25563T C28863T A29903-

EPI_ISL_485999
 2020-03-27 2020-07-10
 United States hCoV-19/USA/WA-UW-2558/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTG1- C241T C1059T C3037T C14408T C18252T A23403G G25563T G29553A AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_486030
 2020-03-27 2020-07-10
 United States hCoV-19/USA/WA-UW-2767/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C36T C241T C1059T C3037T C14408T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_486037
 2020-03-27 2020-07-10
 United States hCoV-19/USA/WA-UW-2805/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T G626A C1059T C3037T C12880T C14408T C19263T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_486039
 2020-03-27 2020-07-10
 United States hCoV-19/USA/WA-UW-2818/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTA1- C241T C1059T C3037T C14408T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_486059
 2020-03-27 2020-07-10
 United States hCoV-19/USA/WA-UW-2953/2020
 ATTAAA1- C36T C8782T C17747T A17858G C18060T C23604A T25783C T28144C C29870A

EPI_ISL_486064
 2020-03-27 2020-07-10
 United States hCoV-19/USA/WA-UW-2971/2020
 AT1- A4T C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_486066
 2020-03-27 2020-07-10
 United States hCoV-19/USA/WA-UW-2980/2020
 ATTAAAGGTTTAT1- A14T CCCAGGTAACAAACCAA19- C36T C241T C1059T C3037T C14408T A23403G G25563T G29553A AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_486067
 2020-03-27 2020-07-10
 United States hCoV-19/USA/WA-UW-2982/2020
 ATTAAA1- C36T C241T C1059T C3037T C6040T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_486068
 2020-03-27 2020-07-10
 United States hCoV-19/USA/WA-UW-2983/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- C36T C241T C1059T C3037T C12880T C14408T A23403G G25563T G29553A TG29867AA C29870A

EPI_ISL_486069
 2020-03-27 2020-07-10
 United States hCoV-19/USA/WA-UW-2986/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- AC35WT C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T -29865AAAAA TG29867AA C29870A

EPI_ISL_486070
 2020-03-27 2020-07-10
 United States hCoV-19/USA/WA-UW-2987/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C36T C8782T C17747T A17858G C18060T G24815C T28144C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_486071
 2020-03-27 2020-07-10
 United States hCoV-19/USA/WA-UW-2997/2020
 A4- C36T C241T C1059T C3037T C6040T C14408T A23403G G25563T C29870V AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_486074
 2020-03-27 2020-07-10
 United States hCoV-19/USA/WA-UW-3003/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- AAC34WWT C5806T C8782T C10818T C14937T C17747T A17858G C18060T T28144C AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_486075
 2020-03-27 2020-07-10
 United States hCoV-19/USA/WA-UW-3007/2020
 ATTAAA1- C241T C1059T C1912T C3037T C6312T T9958C C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_486076
 2020-03-27 2020-07-10
 United States hCoV-19/USA/WA-UW-3008/2020
 A1- TA3CG C36T C241T C1059T C3037T C6040T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_486077
 2020-03-27 2020-07-10
 United States hCoV-19/USA/WA-UW-3009/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- C36T C241T C1059T C3037T C14408T A23403G G25563T G29553A AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_486078
 2020-03-27 2020-07-10
 United States hCoV-19/USA/WA-UW-3012/2020
 ATTAAAGGTTTATACCTTCCCAGG1- G127T C8782T T10881C C17747T A17858G C18060T A27317G C28093T T28144C AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_486079
 2020-03-27 2020-07-10
 United States hCoV-19/USA/WA-UW-3018/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C241T C1059T C3037T C14408T A23403G G25563T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_486083
 2020-03-27 2020-07-10
 United States hCoV-19/USA/WA-UW-3041/2020
 ATTAAAGGTTTATACCTTCCCAGG1- A31T AAC34TTT C8782T C16767T C17747T A17858G C18060T T28144C C28887T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_486084
 2020-03-27 2020-07-10
 United States hCoV-19/USA/WA-UW-3046/2020
 A1- AAC34TTT C8782T C17747T A17858G C18060T T28144C C28887T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_486085
 2020-03-27 2020-07-10
 United States hCoV-19/USA/WA-UW-3048/2020
 AT1GA A4T C36T C8782T C17747T A17858G C18060T T28144C C28887T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_486086
 2020-03-27 2020-07-10
 United States hCoV-19/USA/WA-UW-3052/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C36T C8782T C17747T A17858G C18060T T28144C C28887T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_486087
 2020-03-27 2020-07-10
 United States hCoV-19/USA/WA-UW-3060/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGAT1- C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T G29864R TG29867AA C29870A -29904AAAAAAAAAAAAAA

EPI_ISL_486088
 2020-03-27 2020-07-10
 United States hCoV-19/USA/WA-UW-3069/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C8782T A9737G C13584T C17326T C17747T A17858G A17884G C18060T G19645T T28144C C29061T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_486089
 2020-03-27 2020-07-10
 United States hCoV-19/USA/WA-UW-3070/2020
 ATTAAA1- C241T C1059T C3037T C14408T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_487648
 2020-03-27 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5665/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487728
 2020-03-27 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2723/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C988T G11083T C14805T T17247C G26144T C29585T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487764
 2020-03-27 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2721/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16289T G19009T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487788
 2020-03-27 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2744/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487794
 2020-03-27 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2743/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4900A C14408T A23403G C29514Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487811
 2020-03-27 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2724/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T G22104T A23403G C28826T C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487824
 2020-03-27 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2739/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G C21627T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487869
 2020-03-27 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2714/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12400T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487883
 2020-03-27 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2736/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487918
 2020-03-27 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2728/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7716T C14408T C16289T C17555M A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487933
 2020-03-27 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2699/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T21861C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488463
 2020-03-27 2020-07-14
 United Kingdom hCoV-19/England/NORT-282C2E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T T25202K C27970T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488479
 2020-03-27 2020-07-14
 United Kingdom hCoV-19/England/NORT-28265D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T1477A A2480G C2558T G11083T C14805T C22088T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488495
 2020-03-27 2020-07-14
 United Kingdom hCoV-19/England/NORT-2828B1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1912T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488507
 2020-03-27 2020-07-14
 United Kingdom hCoV-19/England/NORT-294A10/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1912T C3037T C14408T C17750Y A23403G T25202K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488544
 2020-03-27 2020-07-14
 United Kingdom hCoV-19/England/NORT-2827A5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G T25202K C26447T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488552
 2020-03-27 2020-07-14
 United Kingdom hCoV-19/England/NORT-294E50/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G8861R C14408T A23403G G28827C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488571
 2020-03-27 2020-07-14
 United Kingdom hCoV-19/England/NORT-294C92/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T2264C C3037T C14408T C19269T G20489T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488573
 2020-03-27 2020-07-14
 United Kingdom hCoV-19/England/NORT-2826D5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G T3313C C9223T G11083T C14805T T17247C A21625G T25202K G26144T C27923T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488574
 2020-03-27 2020-07-14
 United Kingdom hCoV-19/England/NORT-284DDE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488576
 2020-03-27 2020-07-14
 United Kingdom hCoV-19/England/NORT-294AA7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T A23403G C23731T C23854T T25202K G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488581
 2020-03-27 2020-07-14
 United Kingdom hCoV-19/England/NORT-2949B9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1733G C3037T C14408T G15243T A20268G A23403G T25202K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488585
 2020-03-27 2020-07-14
 United Kingdom hCoV-19/England/NORT-294AC5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G4300T C10626T G11083T C14805T G26144T G27806A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488599
 2020-03-27 2020-07-14
 United Kingdom hCoV-19/England/NORT-294A89/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T T25612Y G26144T C27999T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488644
 2020-03-27 2020-07-14
 United Kingdom hCoV-19/England/NORT-294A7A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G C9223T G11083T C14805T A15942G T17247C T25202K G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488646
 2020-03-27 2020-07-14
 United Kingdom hCoV-19/England/NORT-2828FD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488647
 2020-03-27 2020-07-14
 United Kingdom hCoV-19/England/NORT-282990/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G15438T A20268G A23403G T25202K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488662
 2020-03-27 2020-07-14
 United Kingdom hCoV-19/England/NORT-282972/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C17678T C21812Y A23403G T25202K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488715
 2020-03-27 2020-07-14
 United Kingdom hCoV-19/England/NORT-284C1D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G C26447T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488899
 2020-03-27 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2719/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G448K C3037T A8062G T13728C C14408T C17285T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488901
 2020-03-27 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2707/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488924
 2020-03-27 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2733/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488943
 2020-03-27 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2693/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488958
 2020-03-27 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2734/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6651T G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488969
 2020-03-27 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2704/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18267T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488977
 2020-03-27 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2710/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488980
 2020-03-27 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2701/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T13728C C14408T C17285T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488984
 2020-03-27 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2790/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488988
 2020-03-27 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2711/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T21861C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488996
 2020-03-27 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2731/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4904T C14408T C16289T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489002
 2020-03-27 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2745/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27998T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489018
 2020-03-27 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2720/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C3787T G11944T C16362T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489020
 2020-03-27 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2725/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6633T C14408T A23403G C29666G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489047
 2020-03-27 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2708/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- G2123A C7423T G17847A A28293G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489418
 2020-03-27 2020-07-14
 United Kingdom hCoV-19/Scotland/GCVR-17193B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16289T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489429
 2020-03-27 2020-07-14
 United Kingdom hCoV-19/Scotland/GCVR-171A65/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489455
 2020-03-27 2020-07-14
 United Kingdom hCoV-19/Scotland/GCVR-171A29/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C12710T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489470
 2020-03-27 2020-07-14
 United Kingdom hCoV-19/Scotland/GCVR-171A83/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G C6318T G7675T C9223T G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489547
 2020-03-27 2020-07-14
 United Kingdom hCoV-19/Scotland/GCVR-171A0B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1801G C3037T G3831A T7441Y C14408T T17139W A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_490449
 2020-03-27 2020-07-15
 United Kingdom hCoV-19/England/NORT-2948DA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_490451
 2020-03-27 2020-07-15
 United Kingdom hCoV-19/England/NORT-2948F8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G G28456A C28854T C29741T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_490452
 2020-03-27 2020-07-15
 United Kingdom hCoV-19/England/NORT-294904/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7438C G10097A C14408T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_490976
 2020-03-27 2020-07-15
 Peru hCoV-20/Peru/INS-020/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTG1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_491010
 2020-03-27 2020-07-15
 United States hCoV-19/USA/WA-UW-3188/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- A31T C36T C241T C1059T C3037T C14408T A23403G G25563T -29904AAA

EPI_ISL_491013
 2020-03-27 2020-07-15
 United States hCoV-19/USA/WA-UW-3259/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCA1- C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_491014
 2020-03-27 2020-07-15
 United States hCoV-19/USA/WA-UW-3265/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T C3037T C14408T T17813C A23403G T24658C G25563T G29553A AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_491020
 2020-03-27 2020-07-15
 United States hCoV-19/USA/WA-UW-3369/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C36T C241T A761G C1059T C3037T C14408T G17338T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_491021
 2020-03-27 2020-07-15
 United States hCoV-19/USA/WA-UW-3401/2020
 ATTAAA1- C36T C241T C1059T C3037T C14408T A23403G G25563T G29553A C29870H -29904AAAAAAAAAAAAAA

EPI_ISL_491023
 2020-03-27 2020-07-15
 United States hCoV-19/USA/WA-UW-3415/2020
 A1G AAC34TTT C241T C1059T C3037T C14408T A23403G G25563T G29778A AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_491024
 2020-03-27 2020-07-15
 United States hCoV-19/USA/WA-UW-3489/2020
 A1G AAC34TTT C241T C1059T C3037T C14408T A23403G G25563T G29553A -29904AA

EPI_ISL_491025
 2020-03-27 2020-07-15
 United States hCoV-19/USA/WA-UW-3490/2020
 ATTAAA1- C36T C241T C1059T C3037T C14408T A23403G G25563T G29553A A29903-

EPI_ISL_491026
 2020-03-27 2020-07-15
 United States hCoV-19/USA/WA-UW-3493/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C241T C1059T C3037T C14408T A23403G G25563T G29553A AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_491027
 2020-03-27 2020-07-15
 United States hCoV-19/USA/WA-UW-3497/2020
 ATTAAAGGTTTATACCTTC1- A31T AAC34TTT C241T C1059T C3037T C14408T A23403G G25563T G29553A

EPI_ISL_491028
 2020-03-27 2020-07-15
 United States hCoV-19/USA/WA-UW-3500/2020
 ATTAAAGGTTTA1- AACC34TTTA C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_491029
 2020-03-27 2020-07-15
 United States hCoV-19/USA/WA-UW-3511/2020
 ATTAAA1- A31T C36T C8782T T9477A C14805T G25979T T28144C C28657T C28863T -29904AAAAAAAAAA

EPI_ISL_491104
 2020-03-27 2020-07-15
 United States hCoV-19/USA/SC-DHEC-0055/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- T490A C3177T G5069T C8782T T18736C C24034T T26729C G28077C T28144C CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_494598
 2020-03-27 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1432/2020
 ATTAAAG1- C241T C1059T C1887T C3037T C5956T C14408T A17615G A23403G G25563T

EPI_ISL_494601
 2020-03-27 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1435/2020
 ATTA1- C241T C1059T C3037T A8252G C14408T A23403G G25563T

EPI_ISL_494603
 2020-03-27 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1437/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C920T C1059T C3037T C14408T A23403G G25563T C25728T

EPI_ISL_494610
 2020-03-27 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1449/2020
 ATTA1- C241T G942A C1059T C3037T C14408T A23403G G25563T

EPI_ISL_494612
 2020-03-27 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1452/2020
 A1- C241T C1059T C3037T C14408T C16762T A23403G G25563T

EPI_ISL_494615
 2020-03-27 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1456/2020
 ATTA1- C241T C3037T C14408T C18877T A23403G G25563T

EPI_ISL_496370
 2020-03-27 2020-07-24
 Mexico hCoV-19/Mexico/ALSR-1709/2020
 A1- C241T C1059T C3037T A8252G C14408T A23403G G25563T

EPI_ISL_500369
 2020-03-27 2020-07-28
 Spain hCoV-19/Spain/COV005933/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T T13006C C14408T C17004T A23403G G25563T C25688T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_500386
 2020-03-27 2020-07-28
 Spain hCoV-19/Spain/COV005952/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T T13006C C14408T G17302T A23403G T24229A G25563T C25688T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_500500
 2020-03-27 2020-07-29
 United States hCoV-19/USA/CT-UW-3129/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T C1059T C3037T G6902T C11916T C14408T C18998T A23403G G25563T G29540A -G29863AAA TG29867AA C29870A

EPI_ISL_500512
 2020-03-27 2020-07-29
 United States hCoV-19/USA/WA-UW-MAYO57/2020
 ATTAAAGGTTTATACCT1- C36T C241T C1059T C3037T C10319T C14408T A18211C A23403G G25563T C27964T A29143C AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_500705
 2020-03-27 2020-07-29
 Australia hCoV-19/Australia/NSW2310/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_501193
 2020-03-27 2020-07-31
 Malaysia hCoV-19/Malaysia/2297/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C6312A -11075TTT G11083T C13730T C23929T C28311T

EPI_ISL_501194
 2020-03-27 2020-07-31
 Malaysia hCoV-19/Malaysia/2363/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C6312A T7621C G11083T C13730T C21627T C23929T C25549T C28311T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_506978
 2020-03-27 2020-08-02
 South Korea hCoV-19/Korea/KCDC2184/2020
 C241T C3037T G10835T C14408T A23403G GGG28881AAC

EPI_ISL_506981
 2020-03-27 2020-08-02
 South Korea hCoV-19/Korea/KCDC2187/2020
 ATTAAAGGTTT1- A12T C241T C3037T T4654C G5108A C14408T A23403G GGG28881AAC

EPI_ISL_507008
 2020-03-27 2020-08-03
 Sweden hCoV-19/Sweden/SVA200327SZ-NSW/2020
 C36T C241T C1059T C3037T C14408T G15380T A23403G G25563T C29025T AAAAAAAAAAAAAAAAA29887-

EPI_ISL_507018 MT820469
 2020-03-27 2020-07-30
 Saudi Arabia SARS-CoV-2/human/SAU/KAIMRC12/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_507127
 2020-03-27 2020-08-03
 United Kingdom hCoV-19/England/NORT-2A6213/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507894
 2020-03-27 2020-08-03
 United States hCoV-19/USA/MI-MDHHS-SC21118/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C1059T C1063Y C3037T C5986T C14408T G22104K A23403G G25563T C26645T C27752Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507903
 2020-03-27 2020-08-03
 United States hCoV-19/USA/MI-MDHHS-SC21127/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T C3037T C14408T A23403G G25563T TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_507977
 2020-03-27 2020-08-03
 United States hCoV-19/USA/MN-MDH-1390/2020
 ATTA1- C241T C1059T G1463A C3037T G7557A C8818T C14408T A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_507978
 2020-03-27 2020-08-03
 United States hCoV-19/USA/MN-MDH-1391/2020
 ATTAAA1- C241T C3037T C14408T C14571T A20268G A23403G CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_507979
 2020-03-27 2020-08-03
 United States hCoV-19/USA/MN-MDH-1392/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C8782T A17858G C18060T A24694T T28144C G28812T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_507980
 2020-03-27 2020-08-03
 United States hCoV-19/USA/MN-MDH-1393/2020
 ATTA1- C241T C1059T G1463A C3037T G7557A C8818T C14408T A23403G G25563T C29803T TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_508896
 2020-03-27 2020-08-04
 France hCoV-19/France/ARA14951/2020
 ATTAAAG1- C241T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_508897
 2020-03-27 2020-08-04
 France hCoV-19/France/ARA14953/2020
 ATTAAAGGTTTATACCTT1- C241T C3037T C14408T C15324T A15860G A23403G AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_508898
 2020-03-27 2020-08-04
 France hCoV-19/France/ARA14993/2020
 ATTAAAG1- C241T C3037T G8179T C14408T C21575T A23403G G27870T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_508899
 2020-03-27 2020-08-04
 France hCoV-19/France/ARA14997/2020
 ATTAAAG1- C241T C3037T C14408T A23403G G25563T A28624T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_508900
 2020-03-27 2020-08-04
 France hCoV-19/France/ARA15119/2020
 ATTAAAG1- C241T C3037T C14408T A23403G G25563T G26754T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_508901
 2020-03-27 2020-08-04
 France hCoV-19/France/ARA15126/2020
 ATTAAAGGTTT1- C241T C1059T G2659T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_508902
 2020-03-27 2020-08-04
 France hCoV-19/France/ARA15224/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C14408T C15324T A15860G A23403G AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_508903
 2020-03-27 2020-08-04
 France hCoV-19/France/ARA15296/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C2416T C3037T G8371T C14408T A23403G A25531C G25563T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_509713 MT844026
 2020-03-27 2020-08-05
 Belize SARS-CoV-2/human/BLZ/CDC-6851/2020
 C241T AAGTCATTT686- C1059T G2808A C3037T G3965A C14408T G16935T G22781A A23403G G25563T A26433G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_509752 MT846456
 2020-03-27 2020-08-05
 United States SARS-CoV-2/human/USA/FL-BPHL-0694/2020
 A1- C241T C3037T C14408T C18877T A23403G G25563T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_509753 MT846457
 2020-03-27 2020-08-05
 United States SARS-CoV-2/human/USA/FL-BPHL-0695/2020
 ATTAAAG1- C241T C3037T C14408T C18877T C19011T A23403G G25563T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_509759 MT846463
 2020-03-27 2020-08-05
 United States SARS-CoV-2/human/USA/FL-BPHL-0701/2020
 A1- C241T C1059T C3037T C14408T A23403G G25563T A28885G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_509763 MT846467
 2020-03-27 2020-08-05
 United States SARS-CoV-2/human/USA/FL-BPHL-0705/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C1059T C3037T C11916T C14408T C14471T C18998T A23403G G25563T G29540A GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_509764 MT846468
 2020-03-27 2020-08-05
 United States SARS-CoV-2/human/USA/FL-BPHL-0706/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C17690T A23403G T26677C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_509767 MT846471
 2020-03-27 2020-08-05
 United States SARS-CoV-2/human/USA/FL-BPHL-0709/2020
 AT1- C241T C1059T C3037T C5884T C13487T C14408T C22858T A23403G G25563T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_510942
 2020-03-27 2020-08-07
 Portugal hCoV-19/Portugal/PT0683/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3653T C14408T C21242T GCTTTA22289- A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_510943
 2020-03-27 2020-08-07
 Portugal hCoV-19/Portugal/PT0684/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T T11890C C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_510981
 2020-03-27 2020-08-07
 Portugal hCoV-19/Portugal/PT0722/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T C15324T A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_510987
 2020-03-27 2020-08-07
 Portugal hCoV-19/Portugal/PT0728/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- ATG1605- C3040T C20270T A29683T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511107
 2020-03-27 2020-08-07
 Portugal hCoV-19/Portugal/PT0848/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A20268G A23403G C29640T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511108
 2020-03-27 2020-08-07
 Portugal hCoV-19/Portugal/PT0849/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T G2808A C3037T C5175T G11083T C14408T A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511109
 2020-03-27 2020-08-07
 Portugal hCoV-19/Portugal/PT0850/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G2808A C3037T C10776A G11083T C14408T A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511110
 2020-03-27 2020-08-07
 Portugal hCoV-19/Portugal/PT0851/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G2808A C3037T C10776A G11083T C14408T A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511111
 2020-03-27 2020-08-07
 Portugal hCoV-19/Portugal/PT0852/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G2808A C3037T G11083T C14408T A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511112
 2020-03-27 2020-08-07
 Portugal hCoV-19/Portugal/PT0853/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G2808A C3037T G11083T C14408T A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511113
 2020-03-27 2020-08-07
 Portugal hCoV-19/Portugal/PT0854/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G2808A C3037T C5175T G11083T C14408T A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511114
 2020-03-27 2020-08-07
 Portugal hCoV-19/Portugal/PT0855/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G2808A C3037T G11083T C14408T A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511116
 2020-03-27 2020-08-07
 Portugal hCoV-19/Portugal/PT0857/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G2808A C3037T G11083T C14408T A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511117
 2020-03-27 2020-08-07
 Portugal hCoV-19/Portugal/PT0858/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G2808A C3037T C9561T G11083T C14408T A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511118
 2020-03-27 2020-08-07
 Portugal hCoV-19/Portugal/PT0859/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C335T C8782T T9477A C9491T C14805T G25979T T28144C C28657T C28863T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511119
 2020-03-27 2020-08-07
 Portugal hCoV-19/Portugal/PT0860/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G2808A C3037T G11083T C14408T A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511121
 2020-03-27 2020-08-07
 Portugal hCoV-19/Portugal/PT0862/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T G2808A C3037T G11083T C14408T A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511122
 2020-03-27 2020-08-07
 Portugal hCoV-19/Portugal/PT0863/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T ATG518- G2808A C3037T C5192T G11083T C14408T A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511123
 2020-03-27 2020-08-07
 Portugal hCoV-19/Portugal/PT0864/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G2808A C3037T G11083T C14408T A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511124
 2020-03-27 2020-08-07
 Portugal hCoV-19/Portugal/PT0865/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G2808A C3037T G11083T C14408T A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511125
 2020-03-27 2020-08-07
 Portugal hCoV-19/Portugal/PT0866/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G2808A C3037T G11083T C14408T A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511126
 2020-03-27 2020-08-07
 Portugal hCoV-19/Portugal/PT0867/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G2808A C3037T C10776A G11083T C14408T A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511127
 2020-03-27 2020-08-07
 Portugal hCoV-19/Portugal/PT0868/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G2808A C3037T G11083T C14408T A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511128
 2020-03-27 2020-08-07
 Portugal hCoV-19/Portugal/PT0869/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G2808A C3037T G11083T C14408T A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511129
 2020-03-27 2020-08-07
 Portugal hCoV-19/Portugal/PT0870/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G2808A C3037T G11083T C14408T A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511130
 2020-03-27 2020-08-07
 Portugal hCoV-19/Portugal/PT0871/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G2808A C3037T G11083T C14408T A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511131
 2020-03-27 2020-08-07
 Portugal hCoV-19/Portugal/PT0872/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G2808A C3037T G11083T C14408T A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511132
 2020-03-27 2020-08-07
 Portugal hCoV-19/Portugal/PT0873/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T G2808A C3037T G11083T C14408T A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511133
 2020-03-27 2020-08-07
 Portugal hCoV-19/Portugal/PT0874/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G2808A C3037T G11083T C14408T A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511135
 2020-03-27 2020-08-07
 Portugal hCoV-19/Portugal/PT0876/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G2808A C3037T G11083T C14408T A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511136
 2020-03-27 2020-08-07
 Portugal hCoV-19/Portugal/PT0877/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G376T C1059T C3037T T13006C C14408T G22899T A23403G G25563T C25688T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511307
 2020-03-27 2020-08-07
 Portugal hCoV-19/Portugal/PT1348/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC C29296T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511341
 2020-03-27 2020-08-07
 Portugal hCoV-19/Portugal/PT1382/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGA1- C241T C3037T C4090T G10265A C14408T A15972G A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511346
 2020-03-27 2020-08-07
 Portugal hCoV-19/Portugal/PT1387/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C4090T G10265A C14408T A15972G A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511347
 2020-03-27 2020-08-07
 Portugal hCoV-19/Portugal/PT1388/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC G29779C TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511348
 2020-03-27 2020-08-07
 Portugal hCoV-19/Portugal/PT1389/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T T2290C C2416T C3037T C14408T C14786T C19884T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511350
 2020-03-27 2020-08-07
 Portugal hCoV-19/Portugal/PT1391/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C6539T C14408T A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511352
 2020-03-27 2020-08-07
 Portugal hCoV-19/Portugal/PT1393/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C6539T C14408T A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511353
 2020-03-27 2020-08-07
 Portugal hCoV-19/Portugal/PT1394/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C6539T C14408T A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511376
 2020-03-27 2020-08-07
 Portugal hCoV-19/Portugal/PT1417/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3140T C14408T A23403G G24077T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511382
 2020-03-27 2020-08-07
 Portugal hCoV-19/Portugal/PT1423/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511383
 2020-03-27 2020-08-07
 Portugal hCoV-19/Portugal/PT1424/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3140T C13059T C14408T A23403G G24077T C29013T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511384
 2020-03-27 2020-08-07
 Portugal hCoV-19/Portugal/PT1425/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511399
 2020-03-27 2020-08-07
 Portugal hCoV-19/Portugal/PT1440/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511406
 2020-03-27 2020-08-07
 Portugal hCoV-19/Portugal/PT1447/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C2143T C8782T T9477A C14805T C16481T G25785T G25979T T28144C C28657T C28863T C29200T G29300C TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511409
 2020-03-27 2020-08-07
 Portugal hCoV-19/Portugal/PT1450/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511420
 2020-03-27 2020-08-07
 Portugal hCoV-19/Portugal/PT1461/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G C25339T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511438
 2020-03-27 2020-08-07
 Portugal hCoV-19/Portugal/PT1479/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T C20402T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511523
 2020-03-27 2020-08-08
 Portugal hCoV-19/Portugal/PT0974/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G T27299C GGG28881AAC T29148C TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511524
 2020-03-27 2020-08-08
 Portugal hCoV-19/Portugal/PT0975/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T C21575T A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511525
 2020-03-27 2020-08-08
 Portugal hCoV-19/Portugal/PT0976/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- A2480G C2558T C9700T G11083T C11956T C14805T T24052C G26144T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511553
 2020-03-27 2020-08-08
 Portugal hCoV-19/Portugal/PT1006/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C106T C241T C3037T C14408T A23403G C26408T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511557
 2020-03-27 2020-08-08
 Portugal hCoV-19/Portugal/PT1010/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T G16853T A23403G C26936T GGG28881AAC A29396G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511558
 2020-03-27 2020-08-08
 Portugal hCoV-19/Portugal/PT1011/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C7564A C14408T A23403G G25273T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511614
 2020-03-27 2020-08-08
 Portugal hCoV-19/Portugal/PT1067/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T G2808A C3037T G11083T C14408T A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511616
 2020-03-27 2020-08-08
 Portugal hCoV-19/Portugal/PT1069/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G2808A C3037T C5175T G11083T C14408T A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511617
 2020-03-27 2020-08-08
 Portugal hCoV-19/Portugal/PT1070/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G2808A C3037T G11083T C14408T A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511618
 2020-03-27 2020-08-08
 Portugal hCoV-19/Portugal/PT1071/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G2808A C3037T G11083T C14408T TTTGGGTGTTTA21982- A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511619
 2020-03-27 2020-08-08
 Portugal hCoV-19/Portugal/PT1072/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T G4162T C14408T A23403G A26530G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511622
 2020-03-27 2020-08-08
 Portugal hCoV-19/Portugal/PT1075/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G2808A C3037T G11083T C14408T A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511623
 2020-03-27 2020-08-08
 Portugal hCoV-19/Portugal/PT1076/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G376T C1059T C3037T T13006C C14408T A23403G G25563T C25688T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511627
 2020-03-27 2020-08-08
 Portugal hCoV-19/Portugal/PT1080/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C13426T C14408T G17944T A20268G A23403G C29640T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511629
 2020-03-27 2020-08-08
 Portugal hCoV-19/Portugal/PT1082/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G2808A C3037T G11083T C14408T C18166T A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511633
 2020-03-27 2020-08-08
 Portugal hCoV-19/Portugal/PT1086/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3140T C9778T A11782G C14408T C17104T A23403G G24077T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511636
 2020-03-27 2020-08-08
 Portugal hCoV-19/Portugal/PT1089/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G2808A C3037T G11083T C14408T A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511649
 2020-03-27 2020-08-08
 Portugal hCoV-19/Portugal/PT1102/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T T10076C C14408T C15324T A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511651
 2020-03-27 2020-08-08
 Portugal hCoV-19/Portugal/PT1104/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G C25047T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511652
 2020-03-27 2020-08-08
 Portugal hCoV-19/Portugal/PT1105/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G393A C3037T C3140T C14408T A23403G G24077T G27014T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511654
 2020-03-27 2020-08-08
 Portugal hCoV-19/Portugal/PT1107/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T G10805A C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511655
 2020-03-27 2020-08-08
 Portugal hCoV-19/Portugal/PT1108/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3140T C14408T A23403G G24077T G29513T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511658
 2020-03-27 2020-08-08
 Portugal hCoV-19/Portugal/PT1111/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C11455T C14408T C21242T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511659
 2020-03-27 2020-08-08
 Portugal hCoV-19/Portugal/PT1112/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511660
 2020-03-27 2020-08-08
 Portugal hCoV-19/Portugal/PT1113/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T T20688C A23403G G25552T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511679
 2020-03-27 2020-08-08
 Portugal hCoV-19/Portugal/PT1132/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C12312T C14408T G16853T T19189C A23403G C26936T GGG28881AAC A29396G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511680
 2020-03-27 2020-08-08
 Portugal hCoV-19/Portugal/PT1133/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCT1- C241T C3037T C3045T C3140T C14408T A23403G G24077T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511763
 2020-03-27 2020-08-08
 Portugal hCoV-19/Portugal/PT1220/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G1244A C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_514490
 2020-03-27 2020-08-17
 United Kingdom hCoV-19/England/PORT-2D267C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2164A C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_514651 MT892998
 2020-03-27 2020-08-17
 United States SARS-CoV-2/human/USA/MN-MDH-1432/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C11224T C14408T C15654T A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_514665 MT893012
 2020-03-27 2020-08-17
 United States SARS-CoV-2/human/USA/MN-MDH-1446/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_515182
 2020-03-27 2020-08-18
 Ghana hCoV-19/Ghana/TTH10/2020
 ATTA1- C8782T G25606T T28144C G28878A G29742A

EPI_ISL_515336
 2020-03-27 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0054/2020
 ATTA1- C241T C1059T C1758T C3037T G10870T G11123A C14408T A23403G G25563T

EPI_ISL_515902
 2020-03-27 2020-08-20
 United States hCoV-19/USA/CA-CDPH009/2020
 ATTAAAG1- C8782T T9094C T12883C C16466Y C17747Y A17858G C18060Y C25916M T26171A T28144C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_516329
 2020-03-27 2020-08-20
 United States hCoV-19/USA/MI-MDHHS-SC21602/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T C3037T C14408T A23403G G25563T C27213Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516331
 2020-03-27 2020-08-20
 United States hCoV-19/USA/MI-MDHHS-SC21604/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C14408T A23403G G25563T TGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29840-

EPI_ISL_517004
 2020-03-27 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A7320/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- ATG1605- C12710T C14396T C28854T

EPI_ISL_517037
 2020-03-27 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A7566/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G10097A T13216G C14408T A21137G A23403G C23731T GGG28881AAC

EPI_ISL_517064
 2020-03-27 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A7742/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T1623C C3037T C4577T C14408T C21145T A23403G C27046T GGG28881AAC

EPI_ISL_517068
 2020-03-27 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A778E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G C25587T C27046T C28344A GGG28881AAC

EPI_ISL_517070
 2020-03-27 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A77BB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A2480G C2558T G11083T T14655C C14805T G26144T C29870A

EPI_ISL_517071
 2020-03-27 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A77CA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C583T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_517076
 2020-03-27 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A7812/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T G21624T A23403G C27661T GGG28881AAC

EPI_ISL_517079
 2020-03-27 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A784F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T G18105T A23403G T26790G GGG28881AAC

EPI_ISL_517087
 2020-03-27 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A78D6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C2470T G11083T C14805T T17247C G26144T

EPI_ISL_517183
 2020-03-27 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A8592/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C313T C3037T G11417T C14408T A23403G GGG28881AAC

EPI_ISL_517214
 2020-03-27 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A87E7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A2480G C2558T G11083T C12374Y C14805T G26144T

EPI_ISL_517222
 2020-03-27 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A886C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_517223
 2020-03-27 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A887B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- ATG1605- G27703T

EPI_ISL_518856 MT919995
 2020-03-27 2020-08-25
 United States SARS-CoV-2/human/USA/MN-MDH-1462/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T G20749A A23403G G25523T G25563T T27869C C28824T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_518857 MT919996
 2020-03-27 2020-08-25
 United States SARS-CoV-2/human/USA/MN-MDH-1463/2020
 ATTAAAGGTTTATACCTTCCCA1- A38R C241T C1059T C3037T C6268A C6606T C14408T A23403G G25563T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_518859 MT919998
 2020-03-27 2020-08-25
 United States SARS-CoV-2/human/USA/MN-MDH-1465/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T G1946T C3037T C14408T A23403G A28858G TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_518866 MT920005
 2020-03-27 2020-08-25
 United States SARS-CoV-2/human/USA/MN-MDH-1472/2020
 ATTAAAGGTTTATACCTTCCCAG1- C8782T A17858G C18060T A24694T T28144C G28812T G28985T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_518870 MT920009
 2020-03-27 2020-08-25
 United States SARS-CoV-2/human/USA/MN-MDH-1476/2020
 ATTAAA1- C241T C3037T C14408T C18877T A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_523289
 2020-03-27 2020-08-26
 Netherlands hCoV-19/Netherlands/LI-EMC-84/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T C26305T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523504
 2020-03-27 2020-08-26
 Netherlands hCoV-19/Netherlands/un-EMC-748/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523929
 2020-03-27 2020-08-27
 Germany hCoV-19/Germany/NW-58/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A G23593T T23671C C29272T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_523941
 2020-03-27 2020-08-27
 Germany hCoV-19/Germany/NW-70/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A C14220T A14502G C20016T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_523951
 2020-03-27 2020-08-27
 United Kingdom hCoV-19/England/203380362/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- T1368C C6990T C14805Y C23707Y GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_524566
 2020-03-27 2020-08-28
 United Kingdom hCoV-19/Scotland/GCVR-171564/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T A14463G C14805T G26144T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525573
 2020-03-27 2020-08-31
 Italy hCoV-19/Italy/BAS-UniMI-2956/2020
 ATTAAAGGTTT1- C241T C3037T A10948G C14408T A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_525635
 2020-03-27 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-31058-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C823T C1059T C3037T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_525636
 2020-03-27 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-31562-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T G28237C G28646A AATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29849-

EPI_ISL_526818
 2020-03-27 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0600/2020
 AT1- C241T C2416T C3037T G4523A A10323G C10712T C14408T A23403G G25563T

EPI_ISL_529223
 2020-03-27 2020-09-10
 United Kingdom hCoV-19/England/BIRM-61EE5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C392T ATG1605- A1904G A3958G C5826T C8090T C10789T G16236T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529615
 2020-03-27 2020-09-10
 United Kingdom hCoV-19/England/BIRM-61EB8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4540T C8782T T9477A C14805T C25714T G25979T C26029A T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529617
 2020-03-27 2020-09-10
 United Kingdom hCoV-19/England/BIRM-61F1F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530048
 2020-03-27 2020-09-10
 Spain hCoV-19/Spain/MD-LP44/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T18358C A20268G A23403G G27626T ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_530273
 2020-03-27 2020-09-11
 Australia hCoV-19/Australia/QLD1013/2020/P1
 ATTAAAGG1- C8782T C17747T A17858G C18060T A24694T T28144C

EPI_ISL_534816
 2020-03-27 2020-09-14
 United Kingdom hCoV-19/England/OXON-B2DF7/2020
 C241T G3014T C3037T C14408T A23403G G24781T GGG28881AAC

EPI_ISL_534846
 2020-03-27 2020-09-14
 United Kingdom hCoV-19/England/OXON-B328E/2020
 C241T C3037T C14408T A23403G G25429T C26461T

EPI_ISL_534859
 2020-03-27 2020-09-14
 United Kingdom hCoV-19/England/OXON-B3488/2020
 C241T C3037T C14408T A20268G A23403G C28854T AA29902-

EPI_ISL_534862
 2020-03-27 2020-09-14
 United Kingdom hCoV-19/England/OXON-B34F1/2020
 G11083T C14805T T17247C C24130T G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_534865
 2020-03-27 2020-09-14
 United Kingdom hCoV-19/England/OXON-B353A/2020
 C241T C3037T C14408T A23403G G24038T GGG28881AAC A29903-

EPI_ISL_534905
 2020-03-27 2020-09-14
 United Kingdom hCoV-19/England/OXON-B3B92/2020
 C241T C3037T C14408T C18877T A23403G G25563T A29903-

EPI_ISL_534931
 2020-03-27 2020-09-14
 United Kingdom hCoV-19/England/OXON-B4135/2020
 A1515G C3311T C9223T C10277T G11083T C14805T T17247C G26144T AAAAAAA29897R

EPI_ISL_534934
 2020-03-27 2020-09-14
 United Kingdom hCoV-19/England/OXON-B4162/2020
 C241T C3037T C14408T G22592T A23403G GGG28881AAC

EPI_ISL_536268
 2020-03-27 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00240292/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C3037T C11916T C14408T C18998T G21786A A23403G G25563T G29540A AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_536269
 2020-03-27 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00240404/2020
 ATTAAAG1- C241T C1059T C3037T C14408T T21633C A23403G G25563T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_536270
 2020-03-27 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00240414/2020
 ATTA1- C241T C3037T C14408T C15324T A23403G C25433T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_536272
 2020-03-27 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00240479/2020
 ATTAAA1- C241T C3037T A13768G C14408T A20268G A23403G AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_536273
 2020-03-27 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00240536/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C3037T C14408T A23403G G25217T G25563T C29835T TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_536274
 2020-03-27 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00240552/2020
 ATTAAAGGTTTATAC1- C8782T C17747T A17858G C18060T A24694T T28144C GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_536280
 2020-03-27 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00241435/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_536281
 2020-03-27 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00241439/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_536282
 2020-03-27 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00241444/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_536289
 2020-03-27 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00241753/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25217T G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_536337
 2020-03-27 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00242867/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C1059T A2649R C3037T C14408T A23403G G25563T C28606T AAAAAAAA29896-

EPI_ISL_537459
 2020-03-27 2020-09-16
 Spain hCoV-19/Spain/RI-CSIC-99005922/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C1059T C3037T T13006C C14408T G17302T A23403G G25563T C25688T GAGTACGATCGAGT29745- CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_538327
 2020-03-27 2020-09-16
 Canada hCoV-19/Canada/ON-OICR-SLB2793/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2416T C3037T C14408T A23403G G25563T G27261T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_538802
 2020-03-27 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9D00/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T2170C C3037T C14408T G15438T C19318T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538939
 2020-03-27 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9DC4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18657T A20268G A23403G C27442T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538940
 2020-03-27 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9CB8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13730T C14408T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538947
 2020-03-27 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9CC7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1461G C3037T C5730T C14408T A23403G GGG28881AAC C29274Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538951
 2020-03-27 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9CD6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A T13216G C14408T C18486T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538976
 2020-03-27 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9C9A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T C14408T G21724T C22326T A23403G G23587C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539031
 2020-03-27 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A85BE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- A5484G T28160C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539053
 2020-03-27 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A85EB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539054
 2020-03-27 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A883D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1427Y C3037T G11083T C14408T A23403G G24368T G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539077
 2020-03-27 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8800/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3230A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539081
 2020-03-27 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A882E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4331T C14408T C16114T A23403G C23929T G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539159
 2020-03-27 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8545/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539162
 2020-03-27 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8536/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539186
 2020-03-27 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8527/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A5879R C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539196
 2020-03-27 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8C40/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A T13216G C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539574
 2020-03-27 2020-09-19
 Gabon hCoV-19/Gabon/ITM-K023/2020
 C241T C3037T C14322T C14408T C15324T A23403G G28202A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_539575
 2020-03-27 2020-09-19
 Gabon hCoV-19/Gabon/ITM-K027/2020
 ATT1- C8782T C9223T G11230T T28144C G28878A G29742A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_539576
 2020-03-27 2020-09-19
 Gabon hCoV-19/Gabon/ITM-K028/2020
 C241T C1059T C3037T C9891T C14408T A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_541372
 2020-03-27 2020-09-22
 Brazil hCoV-19/Brazil/SE-6529/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- A223T C241T C3037T C6258T C14408T A23403G G25088T GGG28881AAC GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_541769
 2020-03-27 2020-09-23
 United Kingdom hCoV-19/England/LOND-1286EB8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G24368T G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542821
 2020-03-27 2020-09-23
 United States hCoV-19/USA/TX-HMH-1761/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10188T C14408T A23403G T24982C G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547484
 2020-03-27 2020-09-24
 Netherlands hCoV-19/Netherlands/NB-RIVM-10056/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C24023T A24862G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547485
 2020-03-27 2020-09-24
 Netherlands hCoV-19/Netherlands/NB-RIVM-10057/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C24023T A24862G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547533
 2020-03-27 2020-09-24
 Netherlands hCoV-19/Netherlands/UT-RIVM-10125/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C19170T G19509A A23403G C26313T GGG28881AAC G29688C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_548127
 2020-03-27 2020-09-25
 New Zealand hCoV-19/New Zealand/AUK-ESR-20VR2581/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29239A G29540A GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_548353
 2020-03-27 2020-09-26
 United States hCoV-19/USA/CA-CZB-3645/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCT1- C241T C1059T C3037T A7130R C7945T CC14407TT A23403G G25563T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_560573
 2020-03-27 2020-09-29
 France hCoV-19/France/CVL8271/2020
 A26- C28T C36T C241T C3037T C14408T C21233T A23403G A23691G C24621T GGG28881AAC C29743A AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_565972
 2020-03-27 2020-09-30
 United States hCoV-19/USA/MI-MDHHS-SC21911/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_568694
 2020-03-27 2020-10-02
 Indonesia hCoV-19/Indonesia/SA-EIJK-12/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C2449T C25614T C29415T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_569355
 2020-03-27 2020-10-02
 France hCoV-19/France/IHU-0187/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T G3338T C14408T G15438T C21597T A23403G G25563T C25731T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569393
 2020-03-27 2020-10-02
 France hCoV-19/France/IHU-0230/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T G8371T C14408T A23403G G25563T G25909T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569478
 2020-03-27 2020-10-02
 France hCoV-19/France/IHU-0379/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C14408T C15324T A23403G C27476T AGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29799-

MT293174
 2020-03-27 2020-04-03
 United States SARS-CoV-2/human/USAOR-UW409/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATC1- C241T C1059T C3037T C14408T A23403G G25563T G29553A -29904A

MT459988
 2020-03-27 2020-05-12
 United States SARS-CoV-2/human/USA/SC-NHRC-01/2020
 ATTAAAGGTTTAT1- C241T C1059T C3037T C14408T A23403G G25563T C29095T C29668T

MT459989
 2020-03-27 2020-05-12
 United States SARS-CoV-2/human/USA/SC-NHRC-02/2020
 ATTAAAGGTTTA1- C241T C1059T C3037T C14408T A23403G G25563T C29095T

MT477848
 2020-03-27 2020-05-14
 United States SARS-CoV-2/human/USA/AK074/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T A6325M C14408T A23403G G25563T G28044T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

MT670023
 2020-03-27 2020-06-25
 Chile SARS-CoV-2/human/CHL/2020-32205/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT671823
 2020-03-27 2020-06-26
 United States SARS-CoV-2/human/USA/CA-CZB-1769/2020
 A1- C10956T T15922Y C28253T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT706360
 2020-03-27 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-232/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706361
 2020-03-27 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-233/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706364
 2020-03-27 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-236/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T9518C G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706365
 2020-03-27 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-237/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T2116A A10070C G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706366
 2020-03-27 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-238/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706367
 2020-03-27 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-239/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706368
 2020-03-27 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-240/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706369
 2020-03-27 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-241/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A3081C G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT764179
 2020-03-27 2020-07-15
 United States SARS-CoV-2/human/USA/COVID20-0055/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- T490A C3177T G5069T C8782T T18736C C24034T T26729C G28077C T28144C CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

MT810568
 2020-03-27 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0440-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1997T C3037T C4582T C11102T C14408T A20268G A23403G CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810783
 2020-03-27 2020-07-29
 Mexico SARS-CoV-2/human/MEX/SEARCH-1709-TIJ/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T A8252G C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810816
 2020-03-27 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1432-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C1887T C3037T C5956T C14408T A17615G A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810819
 2020-03-27 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1435-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T A8252G C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810821
 2020-03-27 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1437-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C920T C1059T C3037T C14408T A23403G G25563T C25728T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810828
 2020-03-27 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1449-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- G942A C1059T C3037T C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810830
 2020-03-27 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1452-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T C16762T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810833
 2020-03-27 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1456-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T C18877T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810972
 2020-03-27 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0313-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T G3892T C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811317
 2020-03-27 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0689-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C1887T C3037T C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811318
 2020-03-27 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0690-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A20268G A23403G T24076C C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811334
 2020-03-27 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0718-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C1887T C3037T C5956T C14408T A17615G A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811335
 2020-03-27 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0719-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811336
 2020-03-27 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0721-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T A8252G C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811658
 2020-03-27 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0144-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T T18513C T22054C A23403G G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811659
 2020-03-27 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0145-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T A2745C C3037T C14408T A23403G G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811662
 2020-03-27 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0148-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C10319T C14408T A23403G G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811689
 2020-03-27 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0209-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T T18513C T22054C A23403G G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MW008569
 2020-03-27 2020-09-15
 United States SARS-CoV-2/human/USA/GA-EHC-040N/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- T490A C3177T G4720A C8782T C16887T T18736C C24034T T26729C G28077C T28144C A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MW047315
 2020-03-27 2020-09-29
 United States SARS-CoV-2/human/USA/WRCEVA_000513/2020
 A3003T C8782T C10811T T10813A C17747T A17858G C18060T A24694T T28144C

MW047316
 2020-03-27 2020-09-29
 United States SARS-CoV-2/human/USA/WRCEVA_000514/2020
 C241T C1059T C3037T C14408T A23403G G25563T

MW047317
 2020-03-27 2020-09-29
 United States SARS-CoV-2/human/USA/WRCEVA_000515/2020
 C241T C3037T C8664T C14408T C15026T T15264C A23403G C27575T

NMDC60013246
 2020-03-27 2020-06-01
 China hCoV-19/Guangzhou/ID040/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T G1013K C2416T G11230T A20347T G22471T G25563T T28144C G29742A G29868A

EPI_ISL_420027 MT322424
 2020-03-28 2020-04-08
 United States SARS-CoV-2/human/USA/VA-DCLS-0046/2020
 C241T C1059T C1917T C3037T C14408T A23403G G25563T A29869W

EPI_ISL_420140
 2020-03-28 2020-04-05
 Georgia hCoV-19/Georgia/Tb-1352/2020
 C241T C1059T C3037T C14408T G17679T A23403G G25563T -29904AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

EPI_ISL_420157
 2020-03-28 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C079E/2020
 C241T C3037T C14408T G22427A A23403G GGG28881AAC

EPI_ISL_420158
 2020-03-28 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C07CB/2020
 C241T C3037T C14408T A20268G A23403G

EPI_ISL_420193
 2020-03-28 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C044C/2020
 C241T C2471T C3037T C14408T C16289T A23403G G25429T T29826C

EPI_ISL_420194
 2020-03-28 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C028E/2020
 C241T C3037T C14408T C14786T A23403G GGG28881AAC

EPI_ISL_420196
 2020-03-28 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C0251/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_420197
 2020-03-28 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C03B8/2020
 C241T C3037T A11839G T13212C C14408T T19839C A23403G GGG28881AAC

EPI_ISL_420198
 2020-03-28 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C0206/2020
 G431A ATG1605- A11474G C13381T C20270T T27063C GAT27382CTC T28251C A29683T

EPI_ISL_420199
 2020-03-28 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C0233/2020
 C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_420208
 2020-03-28 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C02AC/2020
 C241T C3037T C14408T A23403G C28849T GGG28881AAC

EPI_ISL_420211
 2020-03-28 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C0224/2020
 A2480G C2558T G11083T C14805T G26144T

EPI_ISL_420219
 2020-03-28 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C037C/2020
 C241T C3037T C14408T C18713T A23403G GGG28881AAC

EPI_ISL_420220
 2020-03-28 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C035E/2020
 C241T C3037T C14408T C18713T A23403G C26894T GGG28881AAC

EPI_ISL_420689
 2020-03-28 2020-04-06
 United Kingdom hCoV-19/England/20139046604/2020
 C241T C3037T C6573T C14408T A23403G C25528T GGG28881AAC

EPI_ISL_420690
 2020-03-28 2020-04-06
 United Kingdom hCoV-19/England/20139046704/2020
 C241T C3037T C14408T C15324T A23403G C28603T GGG28881AAC

EPI_ISL_420693
 2020-03-28 2020-04-06
 United Kingdom hCoV-19/England/20139047404/2020
 A1515G C9223T G11083T C14805T T17247C A17799G G26144T

EPI_ISL_420694
 2020-03-28 2020-04-06
 United Kingdom hCoV-19/England/20139047504/2020
 A1350T A2480G C2558T C4455Y A6818W T7730Y G11083T C14805T C19186T A20163R C22802Y C23086Y G26144T

EPI_ISL_420721
 2020-03-28 2020-04-06
 United Kingdom hCoV-19/England/20139057604/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_420722
 2020-03-28 2020-04-06
 United Kingdom hCoV-19/England/20139057704/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_420723
 2020-03-28 2020-04-06
 United Kingdom hCoV-19/England/20139058104/2020
 C241T C3037T C4002T G10097A C13536T C14408T C21646T A23403G C23731T GGG28881AAC

EPI_ISL_420727
 2020-03-28 2020-04-06
 United Kingdom hCoV-19/England/20139059004/2020
 C241T C2416T C3037T C14408T C14786T G19398T G20578T A23403G G25563T C28153T G29399S

EPI_ISL_420728
 2020-03-28 2020-04-06
 United Kingdom hCoV-19/England/20139059504/2020
 A2480G C2558T G11083T C14805T G26144T

EPI_ISL_420731
 2020-03-28 2020-04-06
 United Kingdom hCoV-19/England/20139060004/2020
 C241T A2480G C2558T G11083T C14198T C14805T C25317T G26144T

EPI_ISL_420732
 2020-03-28 2020-04-06
 United Kingdom hCoV-19/England/20139060404/2020
 C241T C3037T C14408T C21762Y A23403G GGG28881AAC

EPI_ISL_420733
 2020-03-28 2020-04-06
 United Kingdom hCoV-19/England/20139060504/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_420742
 2020-03-28 2020-04-06
 United Kingdom hCoV-19/England/20139062704/2020
 T13Y C241T C3037T C9541M C14408T C18115Y A23403G GGG28881AAC

EPI_ISL_420745
 2020-03-28 2020-04-06
 United Kingdom hCoV-19/England/20139063504/2020
 C241T C1059T C3037T C14408T C16329T A23403G C23536T G25563T C25731T C28697Y C29625T

EPI_ISL_420747
 2020-03-28 2020-04-06
 United Kingdom hCoV-19/England/20139063704/2020
 A2480G C2558T C3787Y A4015T G9111A C10232T G11083T C14183Y C14805T G26144T

EPI_ISL_420774
 2020-03-28 2020-04-06
 United Kingdom hCoV-19/England/20142062604/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_420849
 2020-03-28 2020-04-07
 Democratic Republic of the Congo hCoV-19/DRC/523/2020
 ATTAAAGGTTTATAC1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC CGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29750-

EPI_ISL_420877
 2020-03-28 2020-04-07
 Australia hCoV-19/Australia/VIC-CBA3/2020
 C241T C3037T T11638C C14408T C22326T A23403G GGG28881AAC C29708T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_422016
 2020-03-28 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-26796/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T T4186C G11801A C14408T T19839C A23403G G25552T GGG28881AAC

EPI_ISL_422018
 2020-03-28 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-2673C/2020
 AT1- C241T C3037T C14408T C14741T A23403G

EPI_ISL_422034
 2020-03-28 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-27012/2020
 C241T C3037T C14408T C16289T A23403G G25429T

EPI_ISL_422042
 2020-03-28 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-264BD/2020
 C241T C1059T C3037T C10376T C14408T C15738Y G18583T A23403G G24368T G25563T G29773T

EPI_ISL_422057
 2020-03-28 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-268A2/2020
 ATTAAAGGTT1- C241T C3037T G4510A C14408T T20479Y A23403G

EPI_ISL_422072
 2020-03-28 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-26F52/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- T457C A2480G C2558T G7684A G11083T T11182C C12400Y C14391T C14805T G23593T G26144T C26885T C29253T

EPI_ISL_422082
 2020-03-28 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-26BD6/2020
 C241T C3037T C6990T C14408T G14866T G15181A A23403G A24779R

EPI_ISL_422091
 2020-03-28 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-264DB/2020
 A2480G C2558T C2607T G11083T C14805T A17656G G26144T

EPI_ISL_422095
 2020-03-28 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-2705E/2020
 ATTAAAGGTTTATACCTTC1- C241T C3037T C14408T C20148T A23403G GGG28881AAC

EPI_ISL_422096
 2020-03-28 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-2675A/2020
 ATTA1- C241T C3037T C14408T C14741T A23403G

EPI_ISL_422113
 2020-03-28 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-26CB5/2020
 ATTAAAG1- C241Y G1440R G2891R C3037Y G11801R C14408Y T19839Y A23403R G24077R G25552K G28851K C28868Y GGG28881RRS

EPI_ISL_422125
 2020-03-28 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-27003/2020
 ATTA1- A2480G C2558T T9964C G11083T C12897T C14805T G26144T G28562A

EPI_ISL_422131
 2020-03-28 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-27030/2020
 A1- C241T C3037T G9190C C14408T T17126C A20268G A23403G

EPI_ISL_422568 LR878049
 2020-03-28 2020-04-11
 Netherlands hCoV-19/Netherlands/Friesland_3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T13006C C14408T A23403G G25563T C25688T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422571 LR878056
 2020-03-28 2020-04-11
 Netherlands hCoV-19/Netherlands/Friesland_6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G12550A C14408T C17977T A20268G C20740A A23403G G26501T G28975T G29734C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422572 LR878064
 2020-03-28 2020-04-11
 Netherlands hCoV-19/Netherlands/Friesland_7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C9733T C14408T A20047G A23403G GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422761 LR877935
 2020-03-28 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_226/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422776 LR877966
 2020-03-28 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_242/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T T17247C G18651T A23503T G26144T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_423353
 2020-03-28 2020-04-12
 United Kingdom hCoV-19/England/20139065204/2020
 C241T C3037T C14408T G20569T A23403G GGG28881AAC

EPI_ISL_423356
 2020-03-28 2020-04-12
 United Kingdom hCoV-19/England/20139067504/2020
 A2480G C2558T C11074T G11083T C14805T G26144T C28331T G28380T

EPI_ISL_423358
 2020-03-28 2020-04-12
 United Kingdom hCoV-19/England/20139068804/2020
 A1515G C9223T G11083T C14805T T17247C A17799G G26144T

EPI_ISL_423373
 2020-03-28 2020-04-12
 United Kingdom hCoV-19/England/20140002804/2020
 A2480G C2558T G11083T C14805T C19862Y G25311T G26144T

EPI_ISL_423375
 2020-03-28 2020-04-12
 United Kingdom hCoV-19/England/20140003402/2020
 C241T C3037T C14408T C15324Y A23403G G28690K GGG28881RRS

EPI_ISL_423387
 2020-03-28 2020-04-12
 United Kingdom hCoV-19/England/20140009404/2020
 C241T C3037T C14408T A19336M A23403G

EPI_ISL_423395
 2020-03-28 2020-04-12
 United Kingdom hCoV-19/England/20140064704/2020
 ATG1605- C17898T C18570T C23191T C26124T

EPI_ISL_423396
 2020-03-28 2020-04-12
 United Kingdom hCoV-19/England/20140064804/2020
 ATG1605- C17898T C18570T C23191T C26124T

EPI_ISL_423411
 2020-03-28 2020-04-12
 United Kingdom hCoV-19/England/20140071104/2020
 C241T C1059T C1437T C3037T T13006C C14408T T20367Y T23042Y A23403G G25563T C25688T

EPI_ISL_423417
 2020-03-28 2020-04-12
 United Kingdom hCoV-19/England/20140072304/2020
 C241T C2675A C3037T C14408T A23403G GGG28881AAC

EPI_ISL_423418
 2020-03-28 2020-04-12
 United Kingdom hCoV-19/England/20140072504/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_423841
 2020-03-28 2020-04-12
 United Kingdom hCoV-19/England/20132106104/2020
 A2480G C2558T G11083T C14805T G26144T

EPI_ISL_424567
 2020-03-28 2020-04-13
 Iceland hCoV-19/Iceland/547/2020
 C241T C3037T C14408T A23403G G27430A GGG28881AAC

EPI_ISL_424568
 2020-03-28 2020-04-13
 Iceland hCoV-19/Iceland/548/2020
 C241T C3037T A10323G C14408T A20268G A23403G

EPI_ISL_424581
 2020-03-28 2020-04-13
 Iceland hCoV-19/Iceland/561/2020
 ATG1605- C20270T G25352T A29683T

EPI_ISL_424584
 2020-03-28 2020-04-13
 Iceland hCoV-19/Iceland/564/2020
 C241T C2918T C3037T A10323G C14408T A20268G A23403G C24337T

EPI_ISL_424585
 2020-03-28 2020-04-13
 Iceland hCoV-19/Iceland/565/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T

EPI_ISL_424588
 2020-03-28 2020-04-13
 Iceland hCoV-19/Iceland/568/2020
 C241T C3037T A10323G C14408T A20268G A23403G G26951T

EPI_ISL_424590
 2020-03-28 2020-04-13
 Iceland hCoV-19/Iceland/570/2020
 C241T C3037T C14408T A23403G G27430A GGG28881AAC C29733T

EPI_ISL_424591
 2020-03-28 2020-04-13
 Iceland hCoV-19/Iceland/571/2020
 C241T C1059T C1385T C3037T A4448G C14408T A23403G G25563T

EPI_ISL_424593
 2020-03-28 2020-04-13
 Iceland hCoV-19/Iceland/573/2020
 C241T C3037T A10323G C14408T A20268G C20759T A23403G

EPI_ISL_424595
 2020-03-28 2020-04-13
 Iceland hCoV-19/Iceland/575/2020
 C241T C3037T C3253T C14408T A23403G C24054T A25958G C27046T G27621T GGG28881AAC

EPI_ISL_424596
 2020-03-28 2020-04-13
 Iceland hCoV-19/Iceland/576/2020
 C5142T G11083T C14805T T17247C G26144T

EPI_ISL_424606
 2020-03-28 2020-04-13
 Iceland hCoV-19/Iceland/586/2020
 C5142T C10623T G11083T C14805T G16852T T17247C A25625G G26144T G26308T C28732T

EPI_ISL_424616
 2020-03-28 2020-04-13
 Iceland hCoV-19/Iceland/596/2020
 C241T C3037T C14408T A23403G A26530G G29706T

EPI_ISL_424617
 2020-03-28 2020-04-13
 Iceland hCoV-19/Iceland/597/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_424619
 2020-03-28 2020-04-13
 Iceland hCoV-19/Iceland/599/2020
 C241T C3037T A10323G C14408T A20268G A23403G

EPI_ISL_424621
 2020-03-28 2020-04-13
 Iceland hCoV-19/Iceland/601/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_424622
 2020-03-28 2020-04-13
 Iceland hCoV-19/Iceland/602/2020
 C241T C1059T C1302T G1439T C3037T G4370A C14408T A23403G G25563T

EPI_ISL_424624
 2020-03-28 2020-04-13
 Iceland hCoV-19/Iceland/604/2020
 C5142T G11083T C14805T T17247C G26144T

EPI_ISL_425300
 2020-03-28 2020-04-14
 United Kingdom hCoV-19/England/CAMB-74508/2020
 C241T C1684T C3037T C4002T G10097A C13536T C14184T C14408T C21058T A23403G G23501T C23731T GGG28881AAC

EPI_ISL_425304
 2020-03-28 2020-04-14
 United Kingdom hCoV-19/England/CAMB-74544/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_425305
 2020-03-28 2020-04-14
 United Kingdom hCoV-19/England/CAMB-74553/2020
 C241T C3037T C14408T C23086T A23403G A27237G GGG28881AAC

EPI_ISL_425308
 2020-03-28 2020-04-14
 United Kingdom hCoV-19/England/CAMB-74580/2020
 C1314T G11083T C14805T T17247C G26144T

EPI_ISL_425313
 2020-03-28 2020-04-14
 United Kingdom hCoV-19/England/CAMB-745DB/2020
 A187G C241T C3037T C14408T A23403G

EPI_ISL_425319
 2020-03-28 2020-04-14
 United Kingdom hCoV-19/England/CAMB-74650/2020
 ATG1605- C10074T C14352T G23009A C28399T

EPI_ISL_425335
 2020-03-28 2020-04-14
 United Kingdom hCoV-19/England/CAMB-748E1/2020
 C241T C3037T C6627T C14408T A23403G GGG28881AAC

EPI_ISL_425338
 2020-03-28 2020-04-14
 United Kingdom hCoV-19/England/CAMB-7491B/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_425966
 2020-03-28 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB297/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_425968
 2020-03-28 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB314/2020
 G614T C988T G11083T C14805T T17247C G26144T C26735T C29585T

EPI_ISL_425969
 2020-03-28 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB318/2020
 C241T C3037T C6573T C14408T A23403G C25528T G25720T GGG28881AAC

EPI_ISL_425971
 2020-03-28 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB325/2020
 C241T C3037T C14408T A23403G G25429T

EPI_ISL_425972
 2020-03-28 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB326/2020
 C8782T C17470T C26088T T28144C

EPI_ISL_426066 MT345875
 2020-03-28 2020-04-14
 United States SARS-CoV-2/human/USA/ID-UW-4375/2020
 ATTAAAGGTTTA1- C36T C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T -29904AAAAAAA

EPI_ISL_426067 MT345876
 2020-03-28 2020-04-14
 United States SARS-CoV-2/human/USA/ID-UW-4378/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A31T C36T C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T AGTGTAC29756- AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_426069 MT345879
 2020-03-28 2020-04-14
 United States SARS-CoV-2/human/USA/ID-UW-4396/2020
 ATTAAAGGTTTATAC1- C241T T833C C1059T C3037T G5273A C14408T A23403G G25563T C27964T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_426070 MT345880
 2020-03-28 2020-04-14
 United States SARS-CoV-2/human/USA/ID-UW-4400/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C1059T C3037T C14408T A16387T C16859T C19011T A23403G T24749C G25563T G29864A TG29867AA C29870H -29904AAAAAAAAAAAAAAA

EPI_ISL_426299
 2020-03-28 2020-04-15
 United States hCoV-19/USA/NY-Wadsworth-32851-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A18015G A23403G G25563T C26625T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426305
 2020-03-28 2020-04-15
 United States hCoV-19/USA/NY-Wadsworth-31930-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G C23585A G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426309
 2020-03-28 2020-04-15
 United States hCoV-19/USA/NY-Wadsworth-32104-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426459 MT350241
 2020-03-28 2020-04-17
 United States SARS-CoV-2/human/USA/VA-DCLS-0051/2020
 ATTA1- C6027T A10236G G11083T C14805T T17247C T23599C G26144T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_426460 MT350242
 2020-03-28 2020-04-17
 United States SARS-CoV-2/human/USA/VA-DCLS-0052/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25563T C29870A

EPI_ISL_426877 MT451439
 2020-03-28 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC636/2020
 C8782T A17858G C18060T A24694T T28144C

EPI_ISL_426886 MT517423
 2020-03-28 2020-04-17
 Czech Republic SARS-CoV-2/human/CZE/IAB_9/2020
 ATTAAAGGTT1- C241T C3037T G3955T C4940T C14408T A23403G G25534T C27005T C27046T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_426896 MT517433
 2020-03-28 2020-04-17
 Czech Republic SARS-CoV-2/human/CZE/IAB_22/2020
 ATTAAAG1- G160A C241T C3037T C6026T T7438C C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_426927 MT451430
 2020-03-28 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC623/2020
 C8782T C19118T C26088T T28144C

EPI_ISL_426940 MT451446
 2020-03-28 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC644/2020
 C241T C1059T C1392T C3037T G3251T C14408T G22093T A23403G G25563T C26625T

EPI_ISL_426941 MT451447
 2020-03-28 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC645/2020
 C1076T G1397A G11083T C27964T T28688C G29742T

EPI_ISL_426943 MT451449
 2020-03-28 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC647/2020
 C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T

EPI_ISL_426948 MT451452
 2020-03-28 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC652/2020
 C241T C3037T C14408T A23403G

EPI_ISL_426951 MT451455
 2020-03-28 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC655/2020
 C241T C1059T A2018G C3037T C5622T C14408T T21995C A23403G G25563T

EPI_ISL_426952 MT451456
 2020-03-28 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC656/2020
 C4540T C8782T T9477A C14805T G17632A G25979T T28144C C28311T C28657T C28863T

EPI_ISL_426980 MT451481
 2020-03-28 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC685/2020
 A2480G C2558T C8078T C8917T G10631A C10889T G11083T C14805T G16795T G26144T

EPI_ISL_426986 MT451485
 2020-03-28 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC694/2020
 C241T C3037T C5039A C5849T C14408T G15760A A20268G T22378Y A23403G

EPI_ISL_426989 MT451488
 2020-03-28 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC697/2020
 A2480G C2558T C8078T C8917T G10631A C10889T G11083T C14805T G16795T G26144T

EPI_ISL_427082 MT451570
 2020-03-28 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC808/2020
 C3096T G11083T C12546T C12781T G13627T C14805T C15540T C16375T G17944T G26144T A28338G

EPI_ISL_427229 MT358735
 2020-03-28 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-3989/2020
 ATTAAAGGTTTATA1- CCCAGG19- CAAACCAACCAA28T C241T C3037T C14408T C18877T A23403G G25563T G27604A G29864A

EPI_ISL_427232 MT358737
 2020-03-28 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-3994/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C36Y C241T C1059T C3037T C10582T C14408T C15752T A23403G G25563T A29292G AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_427233 MT358738
 2020-03-28 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-3996/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAA29892-

EPI_ISL_427235 MT358740
 2020-03-28 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-4035/2020
 ATTAAAG1- GT8AC AT12TA C15T C241T C1059T C3037T C6040T C14408T A23403G G25563T A29903-

EPI_ISL_428331
 2020-03-28 2020-04-20
 United States hCoV-19/USA/WI-UW-235/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A G922A C3177T C8782T T18736C A22003G C24034T T26729C G28077C T28144C A29282T A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428338
 2020-03-28 2020-04-20
 United States hCoV-19/USA/WI-UW-242/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T15354C C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428339
 2020-03-28 2020-04-20
 United States hCoV-19/USA/WI-UW-243/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428340
 2020-03-28 2020-04-20
 United States hCoV-19/USA/WI-UW-244/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428341
 2020-03-28 2020-04-20
 United States hCoV-19/USA/WI-UW-245/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C8782T C9113T T18736C C21648T C24034T T26729C C27635T G28077C T28144C A29567C A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428343
 2020-03-28 2020-04-20
 United States hCoV-19/USA/WI-UW-247/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A532G C29119T G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428344
 2020-03-28 2020-04-20
 United States hCoV-19/USA/WI-UW-248/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428924
 2020-03-28 2020-04-22
 Russia hCoV-19/Russia/Chelyabinsk-85311/2020
 C241T C1059T C3037T C14408T G18844A G22344T A23403G G25563T C29200T

EPI_ISL_428925
 2020-03-28 2020-04-22
 Poland hCoV-19/Poland/PL_P2/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C8481T C14408T T18927C A23403G G23782T GTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29825-

EPI_ISL_428926
 2020-03-28 2020-04-22
 Poland hCoV-19/Poland/PL_P3/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T T18927C A23403G G23782T GTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29825-

EPI_ISL_428927
 2020-03-28 2020-04-22
 Poland hCoV-19/Poland/PL_P4/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T A544G C3037T T7767C C14408T A23403G AGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29827-

EPI_ISL_428931
 2020-03-28 2020-04-22
 Poland hCoV-19/Poland/PL_P8/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C3037T C14408T C23185T A23403G C25350T C27434T C28826T AGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29827-

EPI_ISL_428932
 2020-03-28 2020-04-22
 Poland hCoV-19/Poland/PL_P9/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T C23185T A23403G C25350T C27434T C28826T TGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29840-

EPI_ISL_428990 MT385414
 2020-03-28 2020-04-23
 United States SARS-CoV-2/human/USA/CA-CZB0104/2020
 C241T C1059T G2764T C3037T C14408T A23403G G25563T

EPI_ISL_428991 MT385415
 2020-03-28 2020-04-23
 United States SARS-CoV-2/human/USA/CA-CZB071/2020
 C241T C1059T C3037T C14408T A23403G G25563T C26625T

EPI_ISL_428996 MT385420
 2020-03-28 2020-04-23
 United States SARS-CoV-2/human/USA/CA-CZB077/2020
 C241T C1059T C3037T C14408T A23403G G25563T C26456T

EPI_ISL_428998 MT385422
 2020-03-28 2020-04-23
 United States SARS-CoV-2/human/USA/CA-CZB084/2020
 C241T C1059T C3037T C11916T C14408T A23403G G25563T

EPI_ISL_428999 MT385423
 2020-03-28 2020-04-23
 United States SARS-CoV-2/human/USA/CA-CZB069/2020
 ATT1- C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429000 MT385424
 2020-03-28 2020-04-23
 United States SARS-CoV-2/human/USA/CA-CZB0103/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_429002 MT385426
 2020-03-28 2020-04-23
 United States SARS-CoV-2/human/USA/CA-CZB098/2020
 AT1- C241T C1059T G2764T C3037T C14408T A23403G G25563T

EPI_ISL_429004 MT385428
 2020-03-28 2020-04-23
 United States SARS-CoV-2/human/USA/CA-CZB085/2020
 A1- C241T C3037T C8318A C9724Y C14408T A20268G A23403G C26111T C28854T

EPI_ISL_429005 MT385429
 2020-03-28 2020-04-23
 United States SARS-CoV-2/human/USA/CA-CZB079/2020
 ATTA1- C8782T C17747T A17858G C18060T T28144C

EPI_ISL_429006 MT385430
 2020-03-28 2020-04-23
 United States SARS-CoV-2/human/USA/CA-CZB095/2020
 AT1- G25775T

EPI_ISL_429008 MT385432
 2020-03-28 2020-04-23
 United States SARS-CoV-2/human/USA/CA-CZB091/2020
 ATT1- C8782T C17747T A17858G C18060T C19952T G24095T T28144C

EPI_ISL_429010 MT385434
 2020-03-28 2020-04-23
 United States SARS-CoV-2/human/USA/CA-CZB0108/2020
 C8782T C10681Y G16377T C17747T A17858G C18060T G25770T T28144C

EPI_ISL_429013 MT385437
 2020-03-28 2020-04-23
 United States SARS-CoV-2/human/USA/CA-CZB080/2020
 ATTAAAGGTT1- C241T G319A C1059T C3037T G11375A C12664T C14408T C19017T C21114T A23403G G25563T

EPI_ISL_429015 MT385439
 2020-03-28 2020-04-23
 United States SARS-CoV-2/human/USA/CA-CZB0100/2020
 A1- C241T C1059T C3037T G8102T C14408T C14877T A23403G G25563T GAACAATGCTA29766-

EPI_ISL_429019 MT385443
 2020-03-28 2020-04-23
 United States SARS-CoV-2/human/USA/CA-CZB078/2020
 AT1- C6723T C8782T C14925T C17747T A17858G C18060T T28144C

EPI_ISL_429029 MT385453
 2020-03-28 2020-04-23
 United States SARS-CoV-2/human/USA/CA-CZB067/2020
 ATTAAAGGTTTA1- C241T C3037T C14408T A20268G A23403G

EPI_ISL_429030 MT385454
 2020-03-28 2020-04-23
 United States SARS-CoV-2/human/USA/CA-CZB072/2020
 C241T C1059T C3037T AACAGAGAA3933- C14408T A23403G G25563T

EPI_ISL_429032 MT385456
 2020-03-28 2020-04-23
 United States SARS-CoV-2/human/USA/CA-CZB082/2020
 ATTAA1- C8782T C17747T A17858G C18060T G20002T T28144C

EPI_ISL_429033 MT385457
 2020-03-28 2020-04-23
 United States SARS-CoV-2/human/USA/CA-CZB086/2020
 ATTAAAGGTT1- C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429036 MT385460
 2020-03-28 2020-04-23
 United States SARS-CoV-2/human/USA/CA-CZB0107/2020
 C8092T

EPI_ISL_429041 MT385465
 2020-03-28 2020-04-23
 United States SARS-CoV-2/human/USA/CA-CZB096/2020
 ATTAA1- C7083T C8782T G16897T C17747T A17858G C18060T T23672Y T28144C

EPI_ISL_429049 MT385473
 2020-03-28 2020-04-23
 United States SARS-CoV-2/human/USA/CA-CZB090/2020
 ATTAAAGGTTTATAC1- C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_429050 MT385474
 2020-03-28 2020-04-23
 United States SARS-CoV-2/human/USA/CA-CZB089/2020
 ATTAAAGGTTTA1- A187G C241T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_429175
 2020-03-28 2020-04-23
 Thailand hCoV-19/Thailand/Bangkok-0039/2020
 A1- G1397A G11083T G14653A C15240T A20284G C28311G T28688C G29737T G29742T

EPI_ISL_429179
 2020-03-28 2020-04-23
 Thailand hCoV-19/Thailand/Bangkok-0043/2020
 ATTAAAGG1- C241T C3037T C8950T C14408T A20268G A23403G

EPI_ISL_429182
 2020-03-28 2020-04-23
 Thailand hCoV-19/Thailand/Bangkok-0046/2020
 AT1- C241T C1059T C3037T C14408T G18922R A23403G G25563T

EPI_ISL_429184
 2020-03-28 2020-04-23
 Thailand hCoV-19/Thailand/Bangkok-0048/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- C241T C1059T C1380T C3037T G3433T C14408T C14913Y A23403G G25563T

EPI_ISL_429236
 2020-03-28 2020-04-23
 Italy hCoV-19/Italy/TE7859/2020
 C48A C241T A538W C3037T G4510T C14408T A23403G G26713T GGG28881AAC AAA29901-

EPI_ISL_429589
 2020-03-28 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI592/2020
 C241T C1059T C3037T T8788C C14408T G19656T A23403G G25563T G26951A

EPI_ISL_429590
 2020-03-28 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI595/2020
 C241T C829T C1059T C3037T C13620T C14408T G15327A A23403G C23635G G25563T C29200T

EPI_ISL_429617 MT375446
 2020-03-28 2020-04-23
 United States SARS-CoV-2/human/USA/WA-UW-4734/2020
 ATTAAAGGT1- C36T C241T C1059T C3037T C14408T C16869T A23403G G25563T G29553A AA29902-

EPI_ISL_429623 MT375452
 2020-03-28 2020-04-23
 United States SARS-CoV-2/human/USA/WA-UW-4766/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C36T G2840A C8782T C17747T A17858G C18060T A26045G T28144C AAAA29900-

EPI_ISL_429626 MT375455
 2020-03-28 2020-04-23
 United States SARS-CoV-2/human/USA/WA-UW-4775/2020
 ATTAAAGGTTTA1- C241T C1059T C3037T A10579G C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_429770
 2020-03-28 2020-04-24
 Luxembourg hCoV-19/Luxembourg/LNS4530810/2020
 C241T C3037T C4084T C14408T C15324T A23403G AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_429970 MT415895
 2020-03-28 2020-04-24
 United States SARS-CoV-2/human/USA/VA-DCLS-0070/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- T490A C3177T C6040T C8782T G12478A T18736C C24034T T26729C G28077C T28144C C28896G A29700G

EPI_ISL_429972 MT415897
 2020-03-28 2020-04-24
 United States SARS-CoV-2/human/USA/VA-DCLS-0072/2020
 ATTA1- C241T C2416T C3037T G4523A C10712T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872C

EPI_ISL_429973 MT415898
 2020-03-28 2020-04-24
 United States SARS-CoV-2/human/USA/VA-DCLS-0073/2020
 ATT1- C241T C2416T C3037T G4523A C10712T C14408T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_429998 MT811550
 2020-03-28 2020-04-24
 Jordan SARS-CoV-2/human/JOR/SEARCH-0039-JOR/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1263T C8782T G25061A C26088T T28144C G28975T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_430465
 2020-03-28 2020-04-27
 India hCoV-19/India/S5/2020
 ATTAAAGGTTTAT1- C241T C3037T C8917T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_430791
 2020-03-28 2020-04-27
 United States hCoV-19/USA/CA-CZB088/2020
 ATTA1- C799T AAAATT6518- T23590C TT26159- G28178T G29711T

EPI_ISL_430798
 2020-03-28 2020-04-27
 Argentina hCoV-19/Argentina/PAIS_A006/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A AATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29849-

EPI_ISL_430952 MT412309
 2020-03-28 2020-04-28
 United States SARS-CoV-2/human/USA/ID-UW-4418/2020
 ATT1- C36T C241T T833C C1059T C3037T C10440T A11425G C14408T A23403G G25563T C27964T

EPI_ISL_432458
 2020-03-28 2020-04-29
 United Kingdom hCoV-19/England/SHEF-C8C2E/2020
 C241T C3037T C14408T G22427A A23403G G27441T GGG28881AAC

EPI_ISL_432549
 2020-03-28 2020-04-29
 United Kingdom hCoV-19/England/SHEF-CD89E/2020
 C241T C3037T G10097A C14408T A23403G G28580T GGG28881AAC

EPI_ISL_432588
 2020-03-28 2020-04-29
 United Kingdom hCoV-19/England/SHEF-CF340/2020
 A2480G C2558T G11083T C14805T G26144T C29144T A29391G

EPI_ISL_432620
 2020-03-28 2020-04-29
 United Kingdom hCoV-19/England/SHEF-D0D99/2020
 C241T C3037T C14408T C21614T A23403G

EPI_ISL_432916
 2020-03-28 2020-04-29
 United Kingdom hCoV-19/England/NOTT-10ED28/2020
 C241T C313T G2424A C3037T C14408T A23403G C26607T GGG28881AAC

EPI_ISL_432921
 2020-03-28 2020-04-29
 United Kingdom hCoV-19/England/NOTT-10ED73/2020
 C241T C313T G1820A C3037T C6541T C14408T A23403G GGG28881AAC

EPI_ISL_432925
 2020-03-28 2020-04-29
 United Kingdom hCoV-19/England/NOTT-10EDCE/2020
 C241T C3037T C14408T A20268G A23403G G29734C

EPI_ISL_432930
 2020-03-28 2020-04-29
 United Kingdom hCoV-19/England/NOTT-10EE16/2020
 C241T C3037T C14408T A23403G C25521T

EPI_ISL_432935
 2020-03-28 2020-04-29
 United Kingdom hCoV-19/England/NOTT-10EE8F/2020
 C241T C3037T C8964T G10521A C14408T A23403G G25429T C28045T

EPI_ISL_432938
 2020-03-28 2020-04-29
 United Kingdom hCoV-19/England/NOTT-10EEBC/2020
 C241T C3037T G10521A C14408T A23403G G25429T C28045T

EPI_ISL_433198
 2020-03-28 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB328/2020
 

EPI_ISL_433360
 2020-03-28 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR919/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- G12647A C12710T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_433362
 2020-03-28 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR929/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- T5551C C7423T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_433367
 2020-03-28 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR968/2020
 C8782T C17470T C26088T T28144C

EPI_ISL_433501
 2020-03-28 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR1053/2020
 ATG1605- A12571G C12710T C28854T

EPI_ISL_433502
 2020-03-28 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR1056/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_434067 MT632898
 2020-03-28 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S307/2020
 G6419A C8782T C8832T C17747T A17858G C18060T C21648T T28144C

EPI_ISL_434130 MT632917
 2020-03-28 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S370/2020
 C241T C1059T C3037T C14408T C16260T A23403G G25563T C28821A

EPI_ISL_434133 MT632883
 2020-03-28 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S373/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_434145 MT632846
 2020-03-28 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S385/2020
 A6693G C8782T C14877T C17747T A17858G C18060T T28144C C28519T A29188T

EPI_ISL_434149 MT632839
 2020-03-28 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S389/2020
 C241T C379A C1059T T2244C C3037T A10761G C14408T A23403G G25563T

EPI_ISL_434153 MT632934
 2020-03-28 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S393/2020
 C8782T G13624T C17747T A17858G C18060T T28144C

EPI_ISL_434159 MT633025
 2020-03-28 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S399/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434160 MT632999
 2020-03-28 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S400/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434161 MT633019
 2020-03-28 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S401/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434162 MT633009
 2020-03-28 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S402/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434167 MT633031
 2020-03-28 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S407/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434169 MT632972
 2020-03-28 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S409/2020
 G1401A C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434171 MT632978
 2020-03-28 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S411/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434175 MT633041
 2020-03-28 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S415/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434177 MT632970
 2020-03-28 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S417/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434179 MT632875
 2020-03-28 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S419/2020
 C8782T C17747T A17858G C18060T T21745C C24381T T28144C

EPI_ISL_434180 MT633024
 2020-03-28 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S420/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434183 MT633003
 2020-03-28 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S423/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434184 MT632997
 2020-03-28 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S424/2020
 C8782T C10635T C17747T A17858G C18060T T28144C

EPI_ISL_434185 MT632948
 2020-03-28 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S425/2020
 C8782T C17747T A17858G C18060T T28144C A29865G

EPI_ISL_434186 MT632922
 2020-03-28 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S426/2020
 C225T C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434187 MT632963
 2020-03-28 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S427/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434188 MT632928
 2020-03-28 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S428/2020
 C3311A C8782T G17671T C17747T A17858G C18060T T28144C

EPI_ISL_434191 MT632967
 2020-03-28 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S431/2020
 C241T C1059T C3037T C14408T A23403G G25563T G29553A

EPI_ISL_434192 MT632995
 2020-03-28 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S432/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434193 MT632939
 2020-03-28 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S433/2020
 C8782T T10830C C17747T A17858G C18060T T28144C

EPI_ISL_434194 MT632945
 2020-03-28 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S434/2020
 C241T C1059T C3037T C14408T A23403G G25563T G29553A

EPI_ISL_434337 MT632954
 2020-03-28 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S577/2020
 A4034G C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434351
 2020-03-28 2020-04-29
 Belgium hCoV-19/Belgium/UGent-33/2020
 C241T C3037T C4893T C14408T A23403G G25563T G29742T

EPI_ISL_434373
 2020-03-28 2020-04-29
 Belgium hCoV-19/Belgium/ITM_C147/2020
 C241T C1059T C3037T C10202T C14408T A23403G G25563T

EPI_ISL_434457
 2020-03-28 2020-04-29
 Greece hCoV-19/Greece/36/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A22124G A23403G GGG28881AAC TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_434558
 2020-03-28 2020-04-30
 Philippines hCoV-19/Philippines/PGC06/2020
 A1- C6312A G11083T C13730T C23929T C25613T C28311T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_434922
 2020-03-28 2020-05-01
 United States hCoV-19/USA/TX-HMH299/2020
 C241T C1059T C3037T C14220T C14408T A23403G G25563T G29402C

EPI_ISL_434923
 2020-03-28 2020-05-01
 United States hCoV-19/USA/TX-HMH300/2020
 T490A C3177T C6040T C8782T G12478A T18736C C24034T T26729C G28077C T28144C C28896G A29700G

EPI_ISL_434924
 2020-03-28 2020-05-01
 United States hCoV-19/USA/TX-HMH301/2020
 T490A C2037T C3177T C6040T C8782T C8950T G12478A T18736C C24034T T26729C G27952T G28077C T28144C C28896G C29451T A29700G

EPI_ISL_434926
 2020-03-28 2020-05-01
 United States hCoV-19/USA/TX-HMH305/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T

EPI_ISL_434928
 2020-03-28 2020-05-01
 United States hCoV-19/USA/TX-HMH312/2020
 C241T C1059T C3037T C10319T C14408T C21575T A23403G G25563T C27964T

EPI_ISL_434931
 2020-03-28 2020-05-01
 United States hCoV-19/USA/TX-HMH315/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_434934
 2020-03-28 2020-05-01
 United States hCoV-19/USA/TX-HMH322/2020
 T490A C3177T C6040T C8782T C8950T G12478A T18736C C24034T T26729C G28077C T28144C C28896G C29451T A29700G

EPI_ISL_434936
 2020-03-28 2020-05-01
 United States hCoV-19/USA/TX-HMH324/2020
 C241T C1059T C3037T C14408T A18082G A23403G G25563T C27964T

EPI_ISL_434938
 2020-03-28 2020-05-01
 United States hCoV-19/USA/TX-HMH326/2020
 C241T C1059T C3037T C14408T G17808T A23403G G25563T C27964T

EPI_ISL_434939
 2020-03-28 2020-05-01
 United States hCoV-19/USA/TX-HMH327/2020
 C241T C676T C3037T C10015T C14408T C21614T A23403G T25430C GGG28881AAC

EPI_ISL_434940
 2020-03-28 2020-05-01
 United States hCoV-19/USA/TX-HMH328/2020
 C241T C1059T C3037T G10096A C14408T A23403G G25563T G26196T C27964T

EPI_ISL_435074
 2020-03-28 2020-05-02
 India hCoV-19/India/NCDC-02250/2020
 ATTAAAGGTTTATAC1- A6081R C6312A G11083T C13730T C23929T C28311T AGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29827-

EPI_ISL_435081
 2020-03-28 2020-05-02
 India hCoV-19/India/NCDC-02248/2020
 C6312A T8022K G11083T C13730T C23929Y C28311T GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_435091
 2020-03-28 2020-05-02
 India hCoV-19/India/NCDC-02245/2020
 T76W T78K C1707T C6310A C6312A T8022K T8598Y G11083T C13730T C19524T C23929T C28311T GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_435092
 2020-03-28 2020-05-02
 India hCoV-19/India/NCDC-02244/2020
 C6312A T6552K G11083T C13730T T18690K A22351W T22515Y C23929T AG24389MS C28311T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_435097
 2020-03-28 2020-05-02
 India hCoV-19/India/NCDC-02252/2020
 C6312A G11083T T13408K C13730T C23929T G28089R C28311T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_435098
 2020-03-28 2020-05-02
 India hCoV-19/India/NCDC-02240/2020
 C4582Y A6081R C6312A T8022K C9039M G11083T C13730T G18148K C23929T AG24389MS C27847Y C28311T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_435112
 2020-03-28 2020-05-02
 India hCoV-19/India/NCDC-02251/2020
 C6310M C6312A T8022K G11083T C13730T C19524Y C23929T AG24389MS C28311T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_435429
 2020-03-28 2020-05-04
 Hungary hCoV-19/Hungary/SRC-03597w/2020
 C241T C3037T C14408T C14937T C15324T T18495C A23403G

EPI_ISL_435446
 2020-03-28 2020-05-05
 United States hCoV-19/USA/LA-SR0141/2020
 C241T C1059T C3037T G13082T C14408T A23403G G25563T C27964T

EPI_ISL_435450
 2020-03-28 2020-05-05
 United States hCoV-19/USA/LA-SR0146/2020
 C241T C1059T C3037T C10188T G11083T C14408T A23403G T24982C G25563T C27964T

EPI_ISL_435464
 2020-03-28 2020-05-05
 United States hCoV-19/USA/LA-SR0161/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T

EPI_ISL_435466
 2020-03-28 2020-05-05
 United States hCoV-19/USA/LA-SR0163/2020
 C241T C1059T C3037T T6394C C10319T C14408T C16859T A23403G G25563T C27964T

EPI_ISL_436043
 2020-03-28 2020-05-05
 United States hCoV-19/USA/DC-CDC-1738/2020
 C241T C1059T C3037T C14408T C16260T A23403G G25563T G26690T C28821A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_436307
 2020-03-28 2020-05-06
 Spain hCoV-19/Spain/Valencia212/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C8782T A12986G C26088T C27970Y T28144C AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_436311
 2020-03-28 2020-05-06
 Spain hCoV-19/Spain/Valencia216/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C8782T A12986G C26088T T28144C AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_436973
 2020-03-28 2020-05-08
 Denmark hCoV-19/Denmark/ALAB-SSI-570/2020
 C241T C1059T C3037T T9931C C14408T A23403G G25563T

EPI_ISL_436984
 2020-03-28 2020-05-08
 Denmark hCoV-19/Denmark/ALAB-SSI-590/2020
 C241T C1059T C1302T C3037T C14408T A23403G G25563T C26922T

EPI_ISL_436985
 2020-03-28 2020-05-08
 Denmark hCoV-19/Denmark/ALAB-SSI-596/2020
 C241T C1059T C1302T C3037T C14408T A23403G G25563T

EPI_ISL_436987
 2020-03-28 2020-05-08
 Denmark hCoV-19/Denmark/ALAB-SSI-600/2020
 C241T C1059T C3037T C9246T C14408T A23403G G25563T

EPI_ISL_437019
 2020-03-28 2020-05-08
 Denmark hCoV-19/Denmark/ALAB-SSI-648/2020
 C241T C3037T C14408T A23403G G25088T

EPI_ISL_437020
 2020-03-28 2020-05-08
 Denmark hCoV-19/Denmark/ALAB-SSI-649/2020
 C241T C1059T C1302T C3037T C14408T A23403G G25563T

EPI_ISL_437021
 2020-03-28 2020-05-08
 Denmark hCoV-19/Denmark/ALAB-SSI-650/2020
 C241T C1059T C1302T C3037T T6096C C9979T C14408T C21952T A23403G G25563T G29779T

EPI_ISL_437023
 2020-03-28 2020-05-08
 Denmark hCoV-19/Denmark/ALAB-SSI-652/2020
 C241T C1059T C3037T C6539T C14408T A23403G G25563T

EPI_ISL_437024
 2020-03-28 2020-05-08
 Denmark hCoV-19/Denmark/ALAB-SSI-653/2020
 C241T C1059T C1302T C3037T C14408T G15380T A23403G G25563T

EPI_ISL_437026
 2020-03-28 2020-05-08
 Denmark hCoV-19/Denmark/ALAB-SSI-659/2020
 C241T C1059T C3037T C6539T C7390T C14408T A23403G G25563T

EPI_ISL_437028
 2020-03-28 2020-05-08
 Denmark hCoV-19/Denmark/ALAB-SSI-661/2020
 C241T G806A C1059T C1302T C2523T C3037T C9474T C11758T C14408T C17010T A23403G G25563T

EPI_ISL_437269
 2020-03-28 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0073/2020
 C241T C3037T C14408T G19825T A23403G GGG28881AAC

EPI_ISL_437398 MT450884
 2020-03-28 2020-05-08
 United States SARS-CoV-2/human/USA/VA-DCLS-0182/2020
 ATTAAAGGTTT1- C241T C1059T C1917T C3037T C14408T A23403G G25563T

EPI_ISL_437515
 2020-03-28 2020-05-11
 United States hCoV-19/USA/AK-PHL070/2020
 ATTAAAGGTTTA1- C241T C1059T C3037T C14408T A23403G G25523T G25563T T27869C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_437587
 2020-03-28 2020-05-11
 United States hCoV-19/USA/CA-SR0195/2020
 C10450T G11083T C14805T T17247C G26144T C28399T C29870A

EPI_ISL_437592
 2020-03-28 2020-05-11
 United States hCoV-19/USA/CA-SR0188/2020
 C241T C1059T C1887T C3037T C14408T A23403G G25563T

EPI_ISL_437672
 2020-03-28 2020-05-11
 Denmark hCoV-19/Denmark/ALAB-SSI-800/2020
 C241T C1059T C1302T C3037T C14408T A23403G G25563T

EPI_ISL_437674
 2020-03-28 2020-05-11
 Denmark hCoV-19/Denmark/ALAB-SSI-817/2020
 C241T C3037T C7819T C7834T C14408T C16887T A23403G

EPI_ISL_437676
 2020-03-28 2020-05-11
 Denmark hCoV-19/Denmark/ALAB-SSI-825/2020
 C241T C619T C1059T C1302T C3037T C11074T C14408T A23403G G25563T C29095T

EPI_ISL_437677
 2020-03-28 2020-05-11
 Denmark hCoV-19/Denmark/ALAB-SSI-834/2020
 C241T C1059T C3037T C14408T A23403G G25563T C29200T

EPI_ISL_437678
 2020-03-28 2020-05-11
 Denmark hCoV-19/Denmark/ALAB-SSI-845/2020
 C241T C3037T C7834T C14408T A23403G

EPI_ISL_437805 MT461605
 2020-03-28 2020-05-11
 United States SARS-CoV-2/human/USA/WA-UW-4014/2020
 ATTA1BGGG A12T TCCC18GGGA C5170T C8782T C16468T C17004T T17673C C17747T A17858G C18060T T28144C

EPI_ISL_437806 MT461606
 2020-03-28 2020-05-11
 United States SARS-CoV-2/human/USA/WA-UW-4015/2020
 ATTAAAGGTTTATACCTTC1- CC20GA C241T C3037T C14408T A23403G T27299C GGG28881AAC T29148C -29904AAAAAAAAAAAAAA

EPI_ISL_437812 MT461612
 2020-03-28 2020-05-11
 United States SARS-CoV-2/human/USA/WA-UW-4046/2020
 ATTAAAG1- TA11GT TCCC18GGGA C8782T C13511T G17686T C17747T A17858G C18060T T28144C -29904AAAAAAAAAAAAAAAA

EPI_ISL_437898 MT459904
 2020-03-28 2020-05-11
 Greece SARS-CoV-2/human/GRC/41_36861/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T G10870T C14408T C14786T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_438480
 2020-03-28 2020-05-12
 United Kingdom hCoV-19/England/CAMB-75FDC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G11083T C14805T G26144T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_439545
 2020-03-28 2020-05-12
 United Kingdom hCoV-19/England/CAMB-7225E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T C18086T G26144T G28842T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_439550
 2020-03-28 2020-05-12
 United Kingdom hCoV-19/England/CAMB-71EB5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3340T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_439557
 2020-03-28 2020-05-12
 United Kingdom hCoV-19/England/CAMB-722C7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T T4138C A4547G G10097A C13536T C14408T A23403G C23731T T25202K GGG28881AAC G28908T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_439918
 2020-03-28 2020-05-12
 United Kingdom hCoV-19/England/CAMB-720CD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11455T C14408T A23403G T25202K GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_439930
 2020-03-28 2020-05-12
 United Kingdom hCoV-19/England/CAMB-72151/2020
 ATTAAAGG1- C241T C3037T G10097A T13216G C14408T A23403G C23731T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_443277
 2020-03-28 2020-05-12
 France hCoV-19/France/B5413/2020
 C241T C1059T C3037T T13006C C14408T A23403G G25563T C25688T G28378T GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_443996
 2020-03-28 2020-05-12
 United Kingdom hCoV-19/England/BRIS-1253ED/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T C2706T T3466C A7025G C9724T -11075TTT G11083T C14805T G26144T C27684T C28486Y TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_444869
 2020-03-28 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-711/2020
 C241T C1059T C1302T C3037T C14408T A23403G G25563T C29119T

EPI_ISL_444873
 2020-03-28 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-719/2020
 C241T C1059T C3037T C3743T C14408T C21855T C22642T A23403G G25563T

EPI_ISL_444874
 2020-03-28 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-723/2020
 C241T C335T C1059T C1302T C3037T C14408T A23403G G25563T

EPI_ISL_444875
 2020-03-28 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-724/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_444879
 2020-03-28 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-728/2020
 C241T C3037T C14408T A23403G C28139A

EPI_ISL_444880
 2020-03-28 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-731/2020
 C241T C1059T C1191T C3037T C14408T G22037A A23403G G25563T

EPI_ISL_444885
 2020-03-28 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-743/2020
 C241T C1059T C1302T C3037T A10323G C14408T A23403G G25563T C29696T

EPI_ISL_444908
 2020-03-28 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-793/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_444909
 2020-03-28 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-794/2020
 ATG1605- C28253A

EPI_ISL_444916
 2020-03-28 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-805/2020
 C241T C1059T C3037T T11233A C14408T C15842A A23403G G25563T G27604T

EPI_ISL_444917
 2020-03-28 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-806/2020
 C241T C3037T C7819T C7834T C14408T C16887T A23403G

EPI_ISL_444924
 2020-03-28 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-826/2020
 C241T C619T C1059T C1302T C3037T C11074T C14408T A23403G G25563T C29095T

EPI_ISL_444925
 2020-03-28 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-827/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T

EPI_ISL_444934
 2020-03-28 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-842/2020
 C241T C3037T C7834T C14408T A23403G C27335T

EPI_ISL_444935
 2020-03-28 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-843/2020
 C241T C3037T C7834T T11149C C14408T A23403G

EPI_ISL_444988
 2020-03-28 2020-05-14
 Spain hCoV-19/Spain/Barcelona_VH0851/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- C241T C3037T G5230T C14408T G17211T A20268G C20762T A23403G

EPI_ISL_444989
 2020-03-28 2020-05-14
 Spain hCoV-19/Spain/Barcelona_VH1484/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T C3037T G6894T C14408T A20268G A23403G

EPI_ISL_445113
 2020-03-28 2020-05-15
 United States hCoV-19/USA/CA-SR0128/2020
 C241T C1059T C1887T C3037T C14408T A17615G A23403G G25563T

EPI_ISL_445114
 2020-03-28 2020-05-15
 United States hCoV-19/USA/CA-SR0130/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_445169 MT474126
 2020-03-28 2020-05-15
 United States SARS-CoV-2/human/USA/CA-CZB-1121/2020
 C241T C1059T G1148A C3037T C9857T T10129Y G12613A C14408T G19711A G25563T AAAA29900-

EPI_ISL_445371
 2020-03-28 2020-05-15
 Chile hCoV-19/Chile/Santiago_75/2020
 ATTAAAGGTTTATACCT1- C241T C3037T C14408T A20268G A23403G A27633G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_447283
 2020-03-28 2020-05-17
 Israel hCoV-19/Israel/701002768/2020
 C241T C1059T C3037T C14408T G21123T A23403G C23844T G25563T A27809G AAAAAAAAAAAA29892-

EPI_ISL_447393
 2020-03-28 2020-05-17
 Israel hCoV-19/Israel/2047364/2020
 C241T C1059T C3037T C3622T C14408T A23403G G25563T C27549T AAAAAAAAAAAA29892-

EPI_ISL_447510
 2020-03-28 2020-05-17
 Spain hCoV-19/Spain/Valencia/COV000580/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C313T C3037T C14408T G21867T A23403G C24208T GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_447511
 2020-03-28 2020-05-17
 Spain hCoV-19/Spain/Valencia/COV000581/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C313T C3037T C5413T C14408T A23403G G28541T GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_447512
 2020-03-28 2020-05-17
 Spain hCoV-19/Spain/Valencia/COV000582/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C16946Y A20268G A23403G CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_447513
 2020-03-28 2020-05-17
 Spain hCoV-19/Spain/Valencia/COV000583/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C3037T C14408T A20268G A23403G G29734C AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_447514
 2020-03-28 2020-05-17
 Spain hCoV-19/Spain/Valencia/COV000584/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A20268G A23403G CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_447515
 2020-03-28 2020-05-17
 Spain hCoV-19/Spain/Valencia/COV000585/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C3037T C12525Y C14408T A20268G A23403G TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_447740
 2020-03-28 2020-05-18
 Colombia hCoV-19/Colombia/GUR-0209/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C3037T C10507T C14408T C18877T A23403G G25563T GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_447741
 2020-03-28 2020-05-18
 Colombia hCoV-19/Colombia/GUR-0210/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T C3037T C10507T C14408T C18877T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_447742
 2020-03-28 2020-05-18
 Colombia hCoV-19/Colombia/GUR-0212/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C3037T C10507T C14408T C18877T A23403G G25563T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_447743
 2020-03-28 2020-05-18
 Colombia hCoV-19/Colombia/GUR-0215/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C3037T C10507T C14408T C14616T C18877T A23403G G25563T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_447744
 2020-03-28 2020-05-18
 Colombia hCoV-19/Colombia/GUR-0454/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C3037T C14408T C18877T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_447745
 2020-03-28 2020-05-18
 Colombia hCoV-19/Colombia/GUR-0458/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T C3037T C14408T A20268G A23403G T23443C AGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29763-

EPI_ISL_447746
 2020-03-28 2020-05-18
 Colombia hCoV-19/Colombia/GUR-0459/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C3037T C14408T A20268G A23403G T23443C GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_447747
 2020-03-28 2020-05-18
 Colombia hCoV-19/Colombia/GUR-0574/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C3037T C14408T A20268G A23403G T23443C AA29902-

EPI_ISL_448971
 2020-03-28 2020-05-19
 United Kingdom hCoV-19/Northern Ireland/NIRE-FB721/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- C241T C1420T C3037T C14408T G21123T A23403G GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_450350
 2020-03-28 2020-05-20
 Norway hCoV-19/Norway/Trondheim-S15/2020
 ATTAAAGGTTTATACCTTCC1- C241T C1415T T1918C C3037T G13921T C14408T C18877T A23403G G24368S G25563T AAAAAAAAAAAAAAA29889-

EPI_ISL_450446 MT499172
 2020-03-28 2020-05-21
 United States SARS-CoV-2/human/USA/CA-CZB-1197/2020
 ATTAAA1- C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_450447 MT499173
 2020-03-28 2020-05-21
 United States SARS-CoV-2/human/USA/CA-CZB-1198/2020
 C241T C3037T G8174R C14408T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_450448 MT499174
 2020-03-28 2020-05-21
 United States SARS-CoV-2/human/USA/CA-CZB-1199/2020
 ATTA1- G3113C G11083T C14805T T17247C G26144T

EPI_ISL_450525
 2020-03-28 2020-05-21
 Poland hCoV-19/Poland/1109201/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G24368T G25563T CCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29801-

EPI_ISL_450727
 2020-03-28 2020-05-22
 Belgium hCoV-19/Belgium/ITM_C152/2020
 C241T C3037T A6507G C14408T A23403G

EPI_ISL_451100
 2020-03-28 2020-05-23
 Australia hCoV-19/Australia/SAP061/2020
 T2G C241T C2416T C3037T C14408T G17122T A23403G G25563T

EPI_ISL_451101
 2020-03-28 2020-05-23
 Australia hCoV-19/Australia/SAP062/2020
 C241T C1059T C3037T C14408T A23403G G25563T G25879T

EPI_ISL_451102
 2020-03-28 2020-05-23
 Australia hCoV-19/Australia/SAP063/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T C14408T A23403G G25563T G25879T

EPI_ISL_452079
 2020-03-28 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-238/2020
 C241T C1059T C3037T T8788C C14408T A23403G G25563T G26951A

EPI_ISL_452186
 2020-03-28 2020-05-27
 Italy hCoV-19/Italy/VR_20COV25-80/2020
 ATTA1- C241T C3037T C14408T A23403G GGG28881AAC TGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29785-

EPI_ISL_452372
 2020-03-28 2020-05-27
 Spain hCoV-19/Spain/COV002057/2020
 C8782T T9477A A12927G C14805T G25979T C26681T T28144C C28657T C28863T

EPI_ISL_452620
 2020-03-28 2020-05-27
 Spain hCoV-19/Spain/COV000955/2020
 C241T C3037T A9023G C14408T A23403G GGG28881AAC

EPI_ISL_452631
 2020-03-28 2020-05-27
 Spain hCoV-19/Spain/COV000941/2020
 C241T C3037T A9023G C14408T A23403G GGG28881AAC C29686Y

EPI_ISL_452633
 2020-03-28 2020-05-27
 Spain hCoV-19/Spain/COV000939/2020
 C241T C3037T A11089G C12669T C14408T A23403G GGG28881AAC

EPI_ISL_453499
 2020-03-28 2020-05-27
 United Kingdom hCoV-19/England/NORT-289243/2020
 C2091T G7393T A10323G G11083T C14805T T17247C G26144T C28377T

EPI_ISL_453868
 2020-03-28 2020-05-28
 Portugal hCoV-19/Portugal/PT0152/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_453869
 2020-03-28 2020-05-28
 Portugal hCoV-19/Portugal/PT0153/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- A2480G C2558T G11083T C14805T C18654T G24095T G26144T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_453877
 2020-03-28 2020-05-28
 Portugal hCoV-19/Portugal/PT0161/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- A2480G C2558T C9661T G11083T C14805T G26144T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_453879
 2020-03-28 2020-05-28
 Portugal hCoV-19/Portugal/PT0163/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C2416T C3037T T13626C C14408T C14786T C19884T G22093A A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_453881
 2020-03-28 2020-05-28
 Portugal hCoV-19/Portugal/PT0165/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C955T C958T A1629C C3037T C3140T C14408T C17733T A23403G G24077T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_453884
 2020-03-28 2020-05-28
 Portugal hCoV-19/Portugal/PT0168/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C955T C958T C3037T C3140T C14408T C17733T A23403G G24077T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_453885
 2020-03-28 2020-05-28
 Portugal hCoV-19/Portugal/PT0169/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C955T C958T C3037T C3140T C14408T C17733T A23403G G24077T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_453889
 2020-03-28 2020-05-28
 Portugal hCoV-19/Portugal/PT0173/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- C241T T505C C3037T C3261T C14408T A15984T C20946T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_453890
 2020-03-28 2020-05-28
 Portugal hCoV-19/Portugal/PT0174/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- A2480G C2558T G11083T C14805T T24052C G26144T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_453891
 2020-03-28 2020-05-28
 Portugal hCoV-19/Portugal/PT0175/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- C241T C3037T A12040G C14408T C15324T A23403G G28975T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_453892
 2020-03-28 2020-05-28
 Portugal hCoV-19/Portugal/PT0176/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- C823T A2480G C2558T G11083T C14805T G26144T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_453894
 2020-03-28 2020-05-28
 Portugal hCoV-19/Portugal/PT0178/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- A2480G C2558T G11083T C11962G C14805T G26144T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_453895
 2020-03-28 2020-05-28
 Portugal hCoV-19/Portugal/PT0179/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- A2480G C2558T G11083T C11962G C14805T G26144T AGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29735-

EPI_ISL_453896
 2020-03-28 2020-05-28
 Portugal hCoV-19/Portugal/PT0180/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- A2480G C2558T G11083T C11962G C14805T G26144T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_453901
 2020-03-28 2020-05-28
 Portugal hCoV-19/Portugal/PT0185/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C25642T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_453915
 2020-03-28 2020-05-28
 Portugal hCoV-19/Portugal/PT0199/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- C241T C3037T A8031G C14408T A20268G A23403G C25658T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454146
 2020-03-28 2020-05-28
 Portugal hCoV-19/Portugal/PT0422/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T G11083T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454147
 2020-03-28 2020-05-28
 Portugal hCoV-19/Portugal/PT0423/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A20268G A23403G G29734C TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454149
 2020-03-28 2020-05-28
 Portugal hCoV-19/Portugal/PT0425/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- C241T C3037T C14408T A23403G GGG28881AAC CGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29754-

EPI_ISL_454150
 2020-03-28 2020-05-28
 Portugal hCoV-19/Portugal/PT0426/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- C241T C3037T C14408T A23403G GGG28881AAC CGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29754-

EPI_ISL_454173
 2020-03-28 2020-05-28
 Portugal hCoV-19/Portugal/PT0449/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- C241T C3037T T7438C C14408T A23403G C29353T CGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29754-

EPI_ISL_454205
 2020-03-28 2020-05-28
 Portugal hCoV-19/Portugal/PT0481/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- C241T C3037T C14408T C19862T A23403G GGG28881AAC CGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29754-

EPI_ISL_454314
 2020-03-28 2020-05-28
 Portugal hCoV-19/Portugal/PT0591/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C7417T C14408T A20268G A23403G G29734C TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454319
 2020-03-28 2020-05-28
 Portugal hCoV-19/Portugal/PT0596/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C7165A G11083T C12823T G26144T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454320
 2020-03-28 2020-05-28
 Portugal hCoV-19/Portugal/PT0597/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C7165A G11083T C12823T G26144T C28383T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454321
 2020-03-28 2020-05-28
 Portugal hCoV-19/Portugal/PT0598/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C7165A G11083T C12823T G26144T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454322
 2020-03-28 2020-05-28
 Portugal hCoV-19/Portugal/PT0599/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C7165A G11083T C12823T G26144T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454363
 2020-03-28 2020-05-28
 United States hCoV-19/USA/PA-MGEL77/2020
 C241T C1059T C3037T C14408T A23403G G25563T C25583T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_454367
 2020-03-28 2020-05-28
 United States hCoV-19/USA/PA-MGEL83/2020
 C241T C1059T C3037T A6442T C13176T C14408T A23403G G25563T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_454637 MT533234
 2020-03-28 2020-05-28
 United States SARS-CoV-2/human/USA/CA-CZB-1279/2020
 C241T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_455220
 2020-03-28 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_418/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4586T G12550A C14408T A20268G C20740A A23403G G29734C GTACGATCGAGT29747- GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455221
 2020-03-28 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_419/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C478T C3037T G12550A C14408T A20268G C20740A C20946T G23120T A23403G C25578T G29734C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455452
 2020-03-28 2020-05-29
 Poland hCoV-19/Poland/PL_P39/2020
 C4338T T9743C G11083T C22088T G26144T

EPI_ISL_455980
 2020-03-28 2020-06-01
 United States hCoV-19/USA/LA-EVTL137/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_455981
 2020-03-28 2020-06-01
 United States hCoV-19/USA/LA-EVTL138/2020
 G94T C241T C1059T C1101T C3037T C14408T A23403G G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_455982
 2020-03-28 2020-06-01
 United States hCoV-19/USA/LA-EVTL139/2020
 C241T C1059T C3037T C14408T C18647T A23403G G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_455983
 2020-03-28 2020-06-01
 United States hCoV-19/USA/LA-EVTL140/2020
 C241T C1059T C3037T C14408T C20844T A23403G G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_455993
 2020-03-28 2020-06-01
 United States hCoV-19/USA/LA-EVTL150/2020
 C241T C643T C1059T C3037T C14408T C21911T A23403G G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_456279
 2020-03-28 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1838/2020
 C241T C1059T C3037T C14408T C16260T A23403G G25563T C28821A

EPI_ISL_456280
 2020-03-28 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1839/2020
 C3096T G11083T C12781T G13627T C14805T C15540T G17944T G26144T A28338G

EPI_ISL_456281
 2020-03-28 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1843/2020
 C241T C1059T C3037T C14408T C16260T A22488C A23403G C28821A

EPI_ISL_456283
 2020-03-28 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1847/2020
 C241T G659A C3037T T7438C C14408T A23403G C29353T

EPI_ISL_457151
 2020-03-28 2020-06-02
 United Kingdom hCoV-19/England/EXET-135C85/2020
 C241T C3037T C14408T C19325T A20268G A23403G C23422T

EPI_ISL_457185
 2020-03-28 2020-06-02
 United Kingdom hCoV-19/England/EXET-135F8C/2020
 C241T C3037T C5005T C14408T A23403G GGG28881AAC C29555T

EPI_ISL_457760 MT646101
 2020-03-28 2020-06-02
 United States SARS-CoV-2/human/USA/DC-HP00096/2020
 C241T C2416T C3037T C5826T C14408T G17334T A23403G G25563T

EPI_ISL_457810 MT646080
 2020-03-28 2020-06-02
 United States SARS-CoV-2/human/USA/DC-HP00117/2020
 C241T C1059T C1917T C3037T C14408T C23086T A23403G G25563T

EPI_ISL_457997
 2020-03-28 2020-06-02
 Oman hCoV-19/Oman/RESP-20-6560/2020
 A20355G

EPI_ISL_457998
 2020-03-28 2020-06-02
 Oman hCoV-19/Oman/RESP-20-6701/2020
 C241T A2161G C3037T G5830A A6248C T10531C C14408T A20268G T23062C A23403G C25658T C26204G

EPI_ISL_458156
 2020-03-28 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0328186/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1862T C3037T A13947T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458157
 2020-03-28 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0328187/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458158
 2020-03-28 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0328188/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T19839C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458159
 2020-03-28 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0328189/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G5950T C14408T C20389T A23403G A26530G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458160
 2020-03-28 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0328190/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G A28765G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458161
 2020-03-28 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0328191/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15277T C15324T G17014T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458162
 2020-03-28 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0328192/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1142T C3037T C14408T C15324T A23403G C27434T A28765G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458163
 2020-03-28 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0328193/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1142T C3037T T4351C C14408T C15324T A23403G C27434T A28765G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458164
 2020-03-28 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0328194/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T T18231C A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458165
 2020-03-28 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0328195/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4465T C14408T C15324T A23403G G26529T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458166
 2020-03-28 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0328196/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G21624C A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458167
 2020-03-28 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0328197/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1142T C3037T C14408T C15324T A23403G C27434T A28765G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458168
 2020-03-28 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0328198/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3510A C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458169
 2020-03-28 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0328199/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G13570T C14408T C15324T A23403G A28765G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458170
 2020-03-28 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0328200/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T19839C A23403G C24099T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458171
 2020-03-28 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0328201/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458172
 2020-03-28 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0328202/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G C27526T A28765G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458173
 2020-03-28 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0328203/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T C15579T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458174
 2020-03-28 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0328204/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G13921A C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458175
 2020-03-28 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0328205/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8394T C12781T C14408T C15277T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458176
 2020-03-28 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0328206/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458177
 2020-03-28 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0328207/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458178
 2020-03-28 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0328208/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A G12482A C13536T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458179
 2020-03-28 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0328209/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C364T C3037T C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458583
 2020-03-28 2020-06-04
 United Kingdom hCoV-19/England/NORT-289207/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13730T C14408T A23403G G25429T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_459879
 2020-03-28 2020-06-04
 Canada hCoV-19/Canada/ON_QGLO-023/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C4543T C8782T C17747T A17858G C18060T C25357T T28144C TC29856CT TAGGA29859- TGA29867ATG A29885C A29895C A29900C

EPI_ISL_459880
 2020-03-28 2020-06-04
 Canada hCoV-19/Canada/ON_QGLO-024/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C2416T C3037T C14408T A23403G C25413T G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_459881
 2020-03-28 2020-06-04
 Canada hCoV-19/Canada/ON_QGLO-025/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C2416T C3037T C14408T A23403G C25413T G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_459882
 2020-03-28 2020-06-04
 Canada hCoV-19/Canada/ON_QGLO-026/2020
 TTAAAGGTTTATACCTTCCCAGGT2- C241T C2416T C3037T C14408T A23403G C25413T G25563T TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856C

EPI_ISL_459883
 2020-03-28 2020-06-04
 Canada hCoV-19/Canada/ON_QGLO-029/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T C27686T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_459884
 2020-03-28 2020-06-04
 Canada hCoV-19/Canada/ON_QGLO-030/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C9994A C14408T A23403G G25563T G28368A AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_459964
 2020-03-28 2020-06-05
 Germany hCoV-19/Germany/Cento-70002372/2020
 A1515G C9223T G11083T C14805T T17247C G26144T

EPI_ISL_460129 MT520204
 2020-03-28 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00627/2020
 ATTAAAGGTTTATA1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_460134 MT520209
 2020-03-28 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00611/2020
 ATTAAAGGTTTATACCTTCCC1- C241T C3037T C14408T A23403G C25916T T27299C GGG28881AAC T29148C C29769T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_460137 MT520212
 2020-03-28 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00628/2020
 ATTAAA1- C241T C3037T C14408T A23403G C25452T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_460161 MT520236
 2020-03-28 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00603/2020
 ATTAAA1- C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_460163 MT520238
 2020-03-28 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00602/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- G105T C241T C3037T C14408T C18877T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460205 MT520280
 2020-03-28 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00614/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- T490A C3177T C6040T C8782T C8950T G12478A T18736C C24034T T26729C G28077C T28144C C28896G C29451T A29700G AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460276 MT520351
 2020-03-28 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00583/2020
 ATTAAA1- C241T C2416T C3037T T10216C C14408T C20030T A23403G G25563T G26233T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_460289 MT520364
 2020-03-28 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00622/2020
 ATTAAA1- C241T C2416T C3037T A11782G C14408T T19026G A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_460295 MT520370
 2020-03-28 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00595/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C2416T C3037T C14408T A23403G G25563T G26233T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_460314 MT520389
 2020-03-28 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00598/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C2416T C3037T C12439T C14408T A23403G G25563T G26233T G29779T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460317 MT520392
 2020-03-28 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00592/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C2061T C2416T C3037T C14408T A23403G G25563T G26233T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_460376 MT520451
 2020-03-28 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00506/2020
 ATTAAAGGTTTATACCTT1- C241T C2416T C3037T C14408T G20718T A23403G G25563T G26233T AAA29901-

EPI_ISL_460382 MT520457
 2020-03-28 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00600/2020
 ATTAAA1- C8782T C17747T A17858G C18060T A24694T T28144C G28812T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_460396 MT520471
 2020-03-28 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00613/2020
 ATTAAAG1- C241T C2416T C3037T C14408T A23403G G25563T G28086T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_460426 MT520501
 2020-03-28 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00581/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_461013
 2020-03-28 2020-06-06
 Netherlands hCoV-19/Netherlands/Limburg_25/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G8179A C14408T A23403G G25563T C25782T G29422T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461039
 2020-03-28 2020-06-06
 Netherlands hCoV-19/Netherlands/Limburg_51/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3044T T11638C C14408T G21786T A23403G C27549T GGG28881AAC C29708T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461161
 2020-03-28 2020-06-06
 Netherlands hCoV-19/Netherlands/NoordBrabant_126/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2251G C3037T C4002T G10097A C13536T C14408T A23403G C23731T T24311C GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461163
 2020-03-28 2020-06-06
 Netherlands hCoV-19/Netherlands/NoordBrabant_128/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11663T C14408T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461282
 2020-03-28 2020-06-06
 Netherlands hCoV-19/Netherlands/Zeeland_43/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1537C C3037T C3241T T13006C C14408T G19684T A23403G G25563T C25688T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_462163
 2020-03-28 2020-06-08
 Belgium hCoV-19/Belgium/GQL-0328309/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4207T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462164
 2020-03-28 2020-06-08
 Belgium hCoV-19/Belgium/LJ-0328310/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23370G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462165
 2020-03-28 2020-06-08
 Belgium hCoV-19/Belgium/FA-0328311/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1551T C3037T C9491T A12858G C14408T C15324T C18246T T20004C A23403G A28765G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462166
 2020-03-28 2020-06-08
 Belgium hCoV-19/Belgium/CFM-0328312/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C9223T C14408T G20578T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462167
 2020-03-28 2020-06-08
 Belgium hCoV-19/Belgium/GC-0328313/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2370T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462168
 2020-03-28 2020-06-08
 Belgium hCoV-19/Belgium/SG-0328314/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G G29736T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462192
 2020-03-28 2020-06-08
 Belgium hCoV-19/Belgium/HJ-0328338/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1457T C1594T C3037T C3096T C11109T C14408T G18756T A23403G C23929T G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462195
 2020-03-28 2020-06-08
 Belgium hCoV-19/Belgium/LL-0328341/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2699G C3037T T3520A A7981G G11998T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462196
 2020-03-28 2020-06-08
 Belgium hCoV-19/Belgium/AM-0328342/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T19839C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462197
 2020-03-28 2020-06-08
 Belgium hCoV-19/Belgium/NA-0328342/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A13947T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462208
 2020-03-28 2020-06-08
 Belgium hCoV-19/Belgium/GJM-0328354/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T C18877T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462224
 2020-03-28 2020-06-08
 Belgium hCoV-19/Belgium/VAJ-0328370/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462242
 2020-03-28 2020-06-08
 Belgium hCoV-19/Belgium/VSPE-0328388/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2456T G11083T C14805T T17247C G26144T G27147T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462471
 2020-03-28 2020-06-08
 Bosnia and Herzegovina hCoV-19/Bosnia and Herzegovina/ChVir7370/2020
 ATTAAAGGTT1- C241T C1059T C3037T C14408T A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_463976
 2020-03-28 2020-06-11
 Canada hCoV-19/Canada/ON_MU-S284/2020
 ATTAAA1- C241T C3037T C14408T T19311Y A23403G GGG28881AAC GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_463978
 2020-03-28 2020-06-11
 Canada hCoV-19/Canada/ON_MU-S305/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C14408T TTTGTATGTAAATAAACATGCATTCCACA19293C AGCTTTTGATAAA19326- A23403G GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_463979
 2020-03-28 2020-06-11
 Canada hCoV-19/Canada/ON_MU-S306/2020
 ATTAAAGG1- C241T C3037T C14408T A23403G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_465854
 2020-03-28 2020-06-11
 United Kingdom hCoV-19/England/20139064704/2020
 A2480G C2558T G11083T C14805T C20051Y G26144T T27638D A29869W

EPI_ISL_465855
 2020-03-28 2020-06-11
 United Kingdom hCoV-19/England/20139066504/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T C29108Y G29773T

EPI_ISL_465856
 2020-03-28 2020-06-11
 United Kingdom hCoV-19/England/20139066604/2020
 C241T C2416T C3037T C5688Y C14408T C14786T G20578T A23403G T24283C T25485C G25563T

EPI_ISL_465858
 2020-03-28 2020-06-11
 United Kingdom hCoV-19/England/20139067404/2020
 A1515G C9223T G11083T C14805T T17247C A17799G G26144T

EPI_ISL_465867
 2020-03-28 2020-06-11
 United Kingdom hCoV-19/England/20140002304/2020
 C241T C3037T C14408T C14724Y G18088K A23403G G27281K G27516K GGG28881AAC

EPI_ISL_465870
 2020-03-28 2020-06-11
 United Kingdom hCoV-19/England/20140003204/2020
 C1613Y A2480G C2558T C7043T G11083T C14805T G26144T

EPI_ISL_465871
 2020-03-28 2020-06-11
 United Kingdom hCoV-19/England/20140004104/2020
 C241T C3037T C14408T C14724T G18088K A23403G G27281T G27516T GGG28881AAC

EPI_ISL_465872
 2020-03-28 2020-06-11
 United Kingdom hCoV-19/England/20140004904/2020
 C241T C2416T C3037T C14408T C14786T G20578T A23403G G25563T T27941Y G28975T

EPI_ISL_465873
 2020-03-28 2020-06-11
 United Kingdom hCoV-19/England/20140005404/2020
 C241T C3037T C14408T C14724Y G18088K A23403G G27281K G27516K GGG28881AAC

EPI_ISL_465878
 2020-03-28 2020-06-11
 United Kingdom hCoV-19/England/20140008904/2020
 C1912T A2480G C2558T T9643C C14805T G25593S G26144T

EPI_ISL_465888
 2020-03-28 2020-06-11
 United Kingdom hCoV-19/England/20140068704/2020
 C241T C3037T C14408T C21242Y A22546G A23403G GGG28881AAC

EPI_ISL_465926
 2020-03-28 2020-06-11
 United Kingdom hCoV-19/England/20142018404/2020
 C241T C3037T C14408T C14724Y G18088K A23403G G27281K G27516K GGG28881RRS

EPI_ISL_465993
 2020-03-28 2020-06-11
 United Kingdom hCoV-19/England/20144023004/2020
 C241T T2987C C3037T C3373A C9096T C11195T C14408T A22102G A23403G GGG28881AAC

EPI_ISL_466006
 2020-03-28 2020-06-11
 United Kingdom hCoV-19/England/20144067704/2020
 A2480G C2558T G11083T C14805T G26144T GAT27382SWY

EPI_ISL_466061
 2020-03-28 2020-06-11
 United Kingdom hCoV-19/England/20148035204/2020
 C241T C3037T C9430Y C14408Y C14724Y C16750Y G18088K A23403R G26144K G27281T G27516K GGG28881AAC

EPI_ISL_467432
 2020-03-28 2020-06-14
 South Africa hCoV-19/South Africa/KRISP-0016/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C3037T C14408T C16376T A23403G GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_468409 MT628145
 2020-03-28 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1442/2020
 C241T C379A C1059T C3037T C14408T A23403G G25012A G25563T

EPI_ISL_468410 MT628146
 2020-03-28 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1443/2020
 C241T C313T C3037T A11348G C14408T A23403G GGG28881AAC

EPI_ISL_468523 MT628246
 2020-03-28 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1593/2020
 C241T C1059T C3037T G8131K C14408T A23403G G25563T GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_468524 MT628247
 2020-03-28 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1594/2020
 ATTAAAGGTTT1- C2836Y C4776T A6821R C8782T C13862Y C17104T C17747T A17858G C18060T G28086K T28144C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_469281
 2020-03-28 2020-06-18
 United Arab Emirates hCoV-19/United Arab Emirates/L9119/2020
 C241T C3037T A6466G C14408T C21342T A23403G

EPI_ISL_471199
 2020-03-28 2020-06-19
 United States hCoV-19/USA/WI-WSLH-200034/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A5011C C14408T T22348C A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471221
 2020-03-28 2020-06-19
 United States hCoV-19/USA/WI-WSLH-200056/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G4523A C10712T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471261
 2020-03-28 2020-06-19
 United States hCoV-19/USA/WI-WSLH-200097/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G G25563T A28349G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471966
 2020-03-28 2020-06-23
 United Kingdom hCoV-19/England/EXET-137360/2020
 G11083T C14805T C18086T T25711C G26144T G28842T

EPI_ISL_473782
 2020-03-28 2020-06-23
 United Kingdom hCoV-19/Scotland/CVR991/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C2558T C6040T G9479K G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475108
 2020-03-28 2020-06-23
 Sweden hCoV-19/Sweden/20-08546/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T

EPI_ISL_475596
 2020-03-28 2020-06-23
 United States hCoV-19/USA/CA-CSMC12/2020
 C241T C1059T C3037T C14408T C21575T A23403G G25563T

EPI_ISL_475607
 2020-03-28 2020-06-23
 United States hCoV-19/USA/CA-CSMC13/2020
 C281T C8782T C10747T A11602T A15293T C17747T A17858G C18060T A19828T C21789T A23167G A27764G T28144C

EPI_ISL_475624
 2020-03-28 2020-06-23
 United States hCoV-19/USA/CA-CSMC15/2020
 C241T ATG518- C3037T TG12725- C14408T C18877T A23403G G25563T TTTTAAAGTTTCCATTTGGAATCTTGA27264-

EPI_ISL_475626
 2020-03-28 2020-06-23
 United States hCoV-19/USA/CA-CSMC17/2020
 C241T C995T C3037T A4850C C14408T C16679T C18877T GAATCTATCAAACTTCTAACTTTAGAGTCCAACCAACA22494- A23403G G25563T

EPI_ISL_475677
 2020-03-28 2020-06-23
 United States hCoV-19/USA/CA-CSMC63/2020
 C241T C3037T C14408T C18877T A23403G C23520T G25563T

EPI_ISL_475678
 2020-03-28 2020-06-23
 United States hCoV-19/USA/CA-CSMC64/2020
 C241T C1059T C3037T C10824T C14408T A23403G G25563T

EPI_ISL_475679
 2020-03-28 2020-06-23
 United States hCoV-19/USA/CA-CSMC65/2020
 C241T C1059T C3037T C12513T C14408T A23403G G25563T

EPI_ISL_475680
 2020-03-28 2020-06-23
 United States hCoV-19/USA/CA-CSMC66/2020
 C241T G443A C3037T C14408T A23403G GGG28881AAC

EPI_ISL_475681
 2020-03-28 2020-06-23
 United States hCoV-19/USA/CA-CSMC67/2020
 

EPI_ISL_475682
 2020-03-28 2020-06-23
 United States hCoV-19/USA/CA-CSMC68/2020
 C241T C3037T C14408T A20268G A23403G G23611T C28854T

EPI_ISL_475683
 2020-03-28 2020-06-23
 United States hCoV-19/USA/CA-CSMC69/2020
 C241T C379A C1059T C3037T C11824T C14408T A23403G G25563T

EPI_ISL_475777
 2020-03-28 2020-06-25
 Austria hCoV-19/Austria/CeMM0301/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G12832A C14408T A21623W A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475819
 2020-03-28 2020-06-25
 Austria hCoV-19/Austria/CeMM0375/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C G2144R C5512T G19999T C29144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475820
 2020-03-28 2020-06-25
 Austria hCoV-19/Austria/CeMM0376/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A3116G C14408T A23403G G25563T A27675M C28253T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475889
 2020-03-28 2020-06-25
 Austria hCoV-19/Austria/CeMM0516/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G9077K C9430Y C13458Y C14408T C16985Y G22708K A23403G G25563T C26768Y C27644Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475890
 2020-03-28 2020-06-25
 Austria hCoV-19/Austria/CeMM0517/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T C16466Y T17247C G22180A G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476900 MT827826
 2020-03-28 2020-06-27
 United States SARS-CoV-2/human/USA/WA-UW-4755/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATA1- C241T C1059T C3037T C14408T C17676T A23403G C23635T G25563T C26022T G29553A AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_477673
 2020-03-28 2020-06-29
 United States hCoV-19/USA/CT-UW-2435/2020
 TAAAGGTTTATA3- CCCAGGTAACAAACCAA19- C36T C241T C1059T C3037T C4246T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_477682
 2020-03-28 2020-06-29
 United States hCoV-19/USA/ID-UW-2425/2020
 ATTAAAGGTT1- C36T C241T T833C C1059T G1264T C3037T C14408T A23403G G25563T C27964T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_478608
 2020-03-28 2020-06-30
 United Kingdom hCoV-19/England/NORT-294B95/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3792T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478614
 2020-03-28 2020-06-30
 United Kingdom hCoV-19/England/NORT-294DCC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C6896T C20270T G25249T A29683T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479758
 2020-03-28 2020-07-01
 Vietnam hCoV-19/Vietnam/IBT-NIHE-16/2020
 ATTAAAGGTTTATACCTTC1- C241T C3037T C14408T A23403G GGG28881AAC GGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29778-

EPI_ISL_479974
 2020-03-28 2020-07-01
 Japan hCoV-19/Japan/PG-0297/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_479975
 2020-03-28 2020-07-01
 Japan hCoV-19/Japan/PG-0299/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T C16751A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_479976
 2020-03-28 2020-07-01
 Japan hCoV-19/Japan/PG-0300/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G GGG28881AAC TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_479986
 2020-03-28 2020-07-01
 Japan hCoV-19/Japan/PG-0311/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C8782T G16381A T17877C C19524T G27806T T28144C G28878A G29742A ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_479987
 2020-03-28 2020-07-01
 Japan hCoV-19/Japan/PG-0312/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- G185T C241T C3037T C14408T A23403G C26735T T27222C GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_479988
 2020-03-28 2020-07-01
 Japan hCoV-19/Japan/PG-0313/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_479989
 2020-03-28 2020-07-01
 Japan hCoV-19/Japan/PG-0314/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480065
 2020-03-28 2020-07-01
 Japan hCoV-19/Japan/PG-0396/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C8782T C12081T G16381A T17877C G27962A T28144C G28878A G29742A TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_480179
 2020-03-28 2020-07-01
 Japan hCoV-19/Japan/PG-0521/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCT1- C241T C313T C3037T C14408T A23403G GGG28881AAC TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_480556
 2020-03-28 2020-07-02
 Senegal hCoV-19/Senegal/1351/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C6312A G11083T C13730T C23929T C28311T AATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29770-

EPI_ISL_482307
 2020-03-28 2020-07-03
 United States hCoV-19/USA/OR-PROV-023/2020
 C217T A4236G G11083T C14805T T24326A T25655C C25904T G26144T

EPI_ISL_482308
 2020-03-28 2020-07-03
 United States hCoV-19/USA/OR-PROV-024/2020
 C913T G11083T C14805T G26144T G28001T

EPI_ISL_482459
 2020-03-28 2020-07-03
 United States hCoV-19/USA/OR-PROV-224/2020
 G11083T C14805T C23029T C24157T G26144T

EPI_ISL_483111
 2020-03-28 2020-07-07
 Australia hCoV-19/Australia/SAP334/2020
 ATTA1- C241T C2937T C3037T A12544T C14408T A20268G A23403G

EPI_ISL_483299
 2020-03-28 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0682-SAN/2020
 ATTAAAG1- C241T C1059T C3037T C14408T C16762T A23403G G25563T CACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTG29730-

EPI_ISL_483309
 2020-03-28 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0698-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- A6042G C8782T T9477A C14805T GTA19518- G25979T T28144C C28657T C28863T

EPI_ISL_483310
 2020-03-28 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0699-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T A8252G G11083T C14408T A23403G G25563T

EPI_ISL_483311
 2020-03-28 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0700-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C1887T C3037T C14408T G21220T A23403G G25563T

EPI_ISL_483312
 2020-03-28 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0701-SAN/2020
 A1- C241T C1059T C1887T C3037T C14408T A23403G G25563T C28775T

EPI_ISL_483320
 2020-03-28 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0715-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C3037T C14408T G15732T T19143C A20268G A23403G

EPI_ISL_483427
 2020-03-28 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0943-SAN/2020
 AT1- C241T C1059T C1887T C3037T C14408T A17615G A23403G G25563T

EPI_ISL_483429
 2020-03-28 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0945-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T C3037T A8252G G11083T C14408T A23403G G25563T

EPI_ISL_484117
 2020-03-28 2020-07-08
 United Kingdom hCoV-19/England/GSTT-265DE77/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484712
 2020-03-28 2020-07-08
 United States hCoV-19/USA/MI-UM-2006S000853/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C9636T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484731
 2020-03-28 2020-07-08
 United States hCoV-19/USA/MI-UM-2006S000881/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A G922A C3177T C8782T T18736C C24034T T26729C G27361T G28077C T28144C A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485918
 2020-03-28 2020-07-10
 United States hCoV-19/USA/CT-UW-2432/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTG1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_485919
 2020-03-28 2020-07-10
 United States hCoV-19/USA/CT-UW-2441/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- A31T A34H C36T C241T C3037T C14408T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_485946
 2020-03-28 2020-07-10
 United States hCoV-19/USA/ID-UW-2480/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C36T C241T T833C C1059T C3037T C4827T C14408T C19662T A23403G G25563T C27964T G29862A G29864A TG29867AA C29870A -29904AAAAAAAAAAAAAAAAAA

EPI_ISL_486002
 2020-03-28 2020-07-10
 United States hCoV-19/USA/WA-UW-2572/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATC1- C241T C1059T C3037T T6353C C14408T A23403G G25563T G29553A TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_486034
 2020-03-28 2020-07-10
 United States hCoV-19/USA/WA-UW-2778/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C8782T C17747T A17858G C18060T T28144C TG29867AA C29870A -29904AAAAAAAAAAAAAAAA

EPI_ISL_486047
 2020-03-28 2020-07-10
 United States hCoV-19/USA/WA-UW-2909/2020
 ATTAAA1- C1549T C8782T C17747T A17858G C18060T C21614A T28144C C28926T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_486049
 2020-03-28 2020-07-10
 United States hCoV-19/USA/WA-UW-2911/2020
 ATTAAAGGTTTAT1- C36T C241T C1059T C3037T C6187T C14408T A15426G C18029T C18348T A23403G G25563T T29410C G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_486057
 2020-03-28 2020-07-10
 United States hCoV-19/USA/WA-UW-2940/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C36T C241T C1059T C3037T C14408T A23403G G25563T G29553A AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_487846
 2020-03-28 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2761/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3881G C14408T A23403G C25350T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487876
 2020-03-28 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5567/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21575T A23403G C25350T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487957
 2020-03-28 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5583/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6543Y C14408T A20268G A23403G G29734C C29738T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488472
 2020-03-28 2020-07-14
 United Kingdom hCoV-19/England/NORT-294C47/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T T25202K G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488486
 2020-03-28 2020-07-14
 United Kingdom hCoV-19/England/NORT-282B21/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C6696T C11001T G27703T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488498
 2020-03-28 2020-07-14
 United Kingdom hCoV-19/England/NORT-28273C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G C9223T G11083T G12331A C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488506
 2020-03-28 2020-07-14
 United Kingdom hCoV-19/England/NORT-28267B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A7040R C14408T A21137G A23403G T23542C C25350T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488514
 2020-03-28 2020-07-14
 United Kingdom hCoV-19/England/NORT-282ABB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1912T C3037T G11083K C14408T A23403G T25202K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488517
 2020-03-28 2020-07-14
 United Kingdom hCoV-19/England/NORT-282E19/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C5007T C8917T C17898T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488549
 2020-03-28 2020-07-14
 United Kingdom hCoV-19/England/NORT-282AE8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G8516A C14408T A20268G G22225T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488550
 2020-03-28 2020-07-14
 United Kingdom hCoV-19/England/NORT-294A2F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C346T G1440A G2891A C7926T C13530T T25202K T27404A A27669G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488555
 2020-03-28 2020-07-14
 United Kingdom hCoV-19/England/NORT-282AF7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1604R C3037T C14408T A20268G C21707T A23403G C26447T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488565
 2020-03-28 2020-07-14
 United Kingdom hCoV-19/England/NORT-282B4F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T C22264T A23403G C23731T T25202K G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488582
 2020-03-28 2020-07-14
 United Kingdom hCoV-19/England/NORT-294E8D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2878T C3037T C14408T A23403G T25202K G27996T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488591
 2020-03-28 2020-07-14
 United Kingdom hCoV-19/England/NORT-294D80/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G T25202K G25244K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488596
 2020-03-28 2020-07-14
 United Kingdom hCoV-19/England/NORT-294C29/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G C21707Y A23403G T25202K C26447T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488605
 2020-03-28 2020-07-14
 United Kingdom hCoV-19/England/NORT-283294/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488614
 2020-03-28 2020-07-14
 United Kingdom hCoV-19/England/NORT-282796/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1755G C3037T G11083T C14408T C15824T G22661T A23403G G27996T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488639
 2020-03-28 2020-07-14
 United Kingdom hCoV-19/England/NORT-282893/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T C27970T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488654
 2020-03-28 2020-07-14
 United Kingdom hCoV-19/England/NORT-28275A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C14408T G20578T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488679
 2020-03-28 2020-07-14
 United Kingdom hCoV-19/England/NORT-2949AA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C2091T C4683T G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488686
 2020-03-28 2020-07-14
 United Kingdom hCoV-19/England/NORT-282C79/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4886T G10097A C14408T G22801T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488717
 2020-03-28 2020-07-14
 United Kingdom hCoV-19/England/NORT-294DAE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G15243T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488718
 2020-03-28 2020-07-14
 United Kingdom hCoV-19/England/NORT-2827E1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C14786T A23403G T25202K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488724
 2020-03-28 2020-07-14
 United Kingdom hCoV-19/England/NORT-282B9A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T T25202K G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488726
 2020-03-28 2020-07-14
 United Kingdom hCoV-19/England/NORT-282AD9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C2091T C4683T T11078G G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488728
 2020-03-28 2020-07-14
 United Kingdom hCoV-19/England/NORT-2827D2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C5693T G11083T C14805T C21638Y T25202K G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488740
 2020-03-28 2020-07-14
 United Kingdom hCoV-19/England/NORT-282F34/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C7423T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488754
 2020-03-28 2020-07-14
 United Kingdom hCoV-19/England/NORT-281F53/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G T3313C C9223T G11083T C14805T G16005T T17247C C19374Y A21625G G26144T C27046T T28136C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488892
 2020-03-28 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2740/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G T25057K C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489062
 2020-03-28 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2763/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T4151G G11083T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489536
 2020-03-28 2020-07-14
 United Kingdom hCoV-19/Scotland/GCVR-171995/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C3787T T5881C C16362T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489580
 2020-03-28 2020-07-14
 United Kingdom hCoV-19/Scotland/GCVR-171810/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3831A G8368T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489660
 2020-03-28 2020-07-14
 United Kingdom hCoV-19/Scotland/GCVR-171889/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1593T C3037T G3831A C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489703
 2020-03-28 2020-07-14
 United Kingdom hCoV-19/Scotland/GCVR-171740/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2919T C3037T C14408T C22879A A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_490453
 2020-03-28 2020-07-15
 United Kingdom hCoV-19/England/NORT-294913/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3792T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_490461
 2020-03-28 2020-07-15
 United Kingdom hCoV-19/England/NORT-294B1D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G20398A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_490467
 2020-03-28 2020-07-15
 United Kingdom hCoV-19/England/NORT-294B86/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491005
 2020-03-28 2020-07-15
 United States hCoV-19/USA/WA-UW-3141/2020
 T2C C241T C1059T C3037T C14408T A23403G TACCCATTGGTGCAGGTATATGCGCTAG23553- G25563T G29553A

EPI_ISL_491006
 2020-03-28 2020-07-15
 United States hCoV-19/USA/WA-UW-3158/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_491007
 2020-03-28 2020-07-15
 United States hCoV-19/USA/WA-UW-3167/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C241T C1059T C3037T C11379T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_491011
 2020-03-28 2020-07-15
 United States hCoV-19/USA/WA-UW-3247/2020
 ATTA1- A31T AACC34TTTH C241T C1059T C3037T C14408T G16912T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_492874
 2020-03-28 2020-07-20
 United Kingdom hCoV-19/England/LOND-124C461/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G626A A1515G C9223T G11083T G13379A C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493205
 2020-03-28 2020-07-21
 Taiwan hCoV-19/Taiwan/NCKUH-012/2020
 ATTAAAGGTTT1- C241T C3037T C10440T G10634A C14408T C15960T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873G

EPI_ISL_493206
 2020-03-28 2020-07-21
 Taiwan hCoV-19/Taiwan/NCKUH-013/2020
 ATTA1- T490A C3177T C6040T C8782T T11470C G12478A T18736C C24034T T26729C G28077C T28144C C28896G A29700G ATGA29866GCTG AA29871CT A29874T AAA29876TGG A29881G AAAAA29883GCCCT AAAAAAAAAAAAAA29890TGTG

EPI_ISL_493332
 2020-03-28 2020-07-21
 Italy hCoV-19/Italy/IZSM-32798-45/2020
 ATTAAAGGTTTATAC1- C241T C3037T C3927T C4993T C14408T A20268G C22458T A23403G

EPI_ISL_493333
 2020-03-28 2020-07-21
 Italy hCoV-19/Italy/IZSM-32803-66/2020
 ATTAAAGGTTTATAC1- C241T C3037T C3927T C4993T C14408T A20268G A23403G

EPI_ISL_494596
 2020-03-28 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1428/2020
 ATTAAAGGT1- C241T C1059T C3037T C9891T C14408T C16762T A23403G G25563T

EPI_ISL_494597
 2020-03-28 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1430/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C1059T C3037T C9891T C14408T C16762T A23403G G25563T

EPI_ISL_494604
 2020-03-28 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1441/2020
 ATTA1- C241T C3037T C14408T C18877T A23403G G25563T

EPI_ISL_494605
 2020-03-28 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1443/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C1059T C1887T C3037T C14408T G17347T A23403G G25563T

EPI_ISL_494606
 2020-03-28 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1444/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C1059T C3037T C14408T C16762T A23403G G25563T CACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTG29730-

EPI_ISL_494607
 2020-03-28 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1446/2020
 ATTAAAGGTTTATACCT1- C241T C1059T C3037T C14408T C16762T A23403G G25563T

EPI_ISL_495658 MT821774
 2020-03-28 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1483/2020
 AT1- C241T C1059T G2198A C3037T C14408T C16260T C22450T A23403G G25563T C28821A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_497745
 2020-03-28 2020-07-25
 Colombia hCoV-19/Colombia/87267/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_500433
 2020-03-28 2020-07-28
 Spain hCoV-19/Spain/COV006002/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C3037T C12073T C14408T C16308T A20268G A23403G G29734C CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_501195
 2020-03-28 2020-07-31
 Malaysia hCoV-19/Malaysia/2735/2020
 ATTAAAGGT1- C6312A T7621C G11083T C13730T C23929T C25549T C28311T C29253T

EPI_ISL_501196
 2020-03-28 2020-07-31
 Malaysia hCoV-19/Malaysia/2811/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C2508A C6310A C6312A G11083T C13730T C19524T TACATG21765- C23929T G27261T C28311T

EPI_ISL_501197
 2020-03-28 2020-07-31
 Malaysia hCoV-19/Malaysia/2813/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C6312A T7621C A7864G G7895A T7912A CT7923TC G7936A G11083T C13730T C23929T C25549T C28311T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_501198
 2020-03-28 2020-07-31
 Malaysia hCoV-19/Malaysia/2875/2020
 ATTA1- C6312A G11083T C13730T C19524T C23929T C28311T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_506982
 2020-03-28 2020-08-02
 South Korea hCoV-19/Korea/KCDC2188/2020
 ATTA1- A2480G C2558T TG9704CT G11083T C14805T C25658T G26144T C27688T

EPI_ISL_506983
 2020-03-28 2020-08-02
 South Korea hCoV-19/Korea/KCDC2189/2020
 ATTA1- C241T C1302T C3037T C14408T C15738T A20268G A23403G

EPI_ISL_506984
 2020-03-28 2020-08-02
 South Korea hCoV-19/Korea/KCDC2190/2020
 ATTA1- T13C C241T C3037T C8299T C10038T C14408T A20268G A23403G G29473A G29734C

EPI_ISL_507075
 2020-03-28 2020-08-03
 United Kingdom hCoV-19/England/LOND-124D284/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- A2480G C2558T A3933C G11083T C14805T G26144T C28887T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_507129
 2020-03-28 2020-08-03
 United Kingdom hCoV-19/England/NORT-2A62E6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G13576T C14408T C21846T A23403G C27503T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507981
 2020-03-28 2020-08-03
 United States hCoV-19/USA/MN-MDH-1394/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T C14925T A23403G G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_507982
 2020-03-28 2020-08-03
 United States hCoV-19/USA/MN-MDH-1395/2020
 ATTAAAG1- T2116A G28871A G29711T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_507983
 2020-03-28 2020-08-03
 United States hCoV-19/USA/MN-MDH-1396/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C1059T C3037T C14408T C18267T G21793C A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_509069
 2020-03-28 2020-08-05
 United States hCoV-19/USA/OR-OHSU-0190/2020
 ATTAAAGGTTT1- A4236G C6195T G11083T C14805T T25655C G26144T AAAAAAAAA29895-

EPI_ISL_509760 MT846464
 2020-03-28 2020-08-05
 United States SARS-CoV-2/human/USA/FL-BPHL-0702/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23403G TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_509761 MT846465
 2020-03-28 2020-08-05
 United States SARS-CoV-2/human/USA/FL-BPHL-0703/2020
 ATTAAA1- C241T C1059T C3037T C12049T C14408T A23403G G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_510898
 2020-03-28 2020-08-07
 Portugal hCoV-19/Portugal/PT0637/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T C16575A A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_510916
 2020-03-28 2020-08-07
 Portugal hCoV-19/Portugal/PT0655/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C2704T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_510940
 2020-03-28 2020-08-07
 Portugal hCoV-19/Portugal/PT0681/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G922A C3037T C14408T C21242T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511120
 2020-03-28 2020-08-07
 Portugal hCoV-19/Portugal/PT0861/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G2808A C3037T C4586T T6686C G11083T C14408T A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511137
 2020-03-28 2020-08-07
 Portugal hCoV-19/Portugal/PT0878/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G2808A C3037T G11083T C14408T A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511138
 2020-03-28 2020-08-07
 Portugal hCoV-19/Portugal/PT0879/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T G2808A C3037T G11083T C14408T A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511156
 2020-03-28 2020-08-07
 Portugal hCoV-19/Portugal/PT0899/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C346T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511157
 2020-03-28 2020-08-07
 Portugal hCoV-19/Portugal/PT0900/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C4073A C14408T A23403G C26002T GGG28881AAC C29459T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511158
 2020-03-28 2020-08-07
 Portugal hCoV-19/Portugal/PT0901/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G2407A C3037T C14408T A23403G G27882T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511159
 2020-03-28 2020-08-07
 Portugal hCoV-19/Portugal/PT0902/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C4276T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511160
 2020-03-28 2020-08-07
 Portugal hCoV-19/Portugal/PT0903/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTG1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511161
 2020-03-28 2020-08-07
 Portugal hCoV-19/Portugal/PT0904/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T G370T C1377T C3037T C3140T C14408T A23403G G24077T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511162
 2020-03-28 2020-08-07
 Portugal hCoV-19/Portugal/PT0905/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G370T C1377T C3037T C3140T C14408T A23403G G24077T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511163
 2020-03-28 2020-08-07
 Portugal hCoV-19/Portugal/PT0906/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511164
 2020-03-28 2020-08-07
 Portugal hCoV-19/Portugal/PT0907/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511165
 2020-03-28 2020-08-07
 Portugal hCoV-19/Portugal/PT0908/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C14408T A23403G G25273T G28326T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511166
 2020-03-28 2020-08-07
 Portugal hCoV-19/Portugal/PT0909/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCT1- C241T C3037T C14408T A23403G G25273T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511167
 2020-03-28 2020-08-07
 Portugal hCoV-19/Portugal/PT0910/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511168
 2020-03-28 2020-08-07
 Portugal hCoV-19/Portugal/PT0911/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C3037T C14408T A20268G G21538T A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511169
 2020-03-28 2020-08-07
 Portugal hCoV-19/Portugal/PT0912/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C2724T C3037T T7814C C14408T A20268G A23403G C25418A C28854T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511170
 2020-03-28 2020-08-07
 Portugal hCoV-19/Portugal/PT0913/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGA1- C241T C2724T C3037T C5974T T7814C C14408T A20268G A23403G C28854T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511172
 2020-03-28 2020-08-07
 Portugal hCoV-19/Portugal/PT0915/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C2724T C3037T G3246T T7814C C14408T A20268G A23403G C28854T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511173
 2020-03-28 2020-08-07
 Portugal hCoV-19/Portugal/PT0916/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C2724T C3037T T7814C C14408T A20268G A23403G C28854T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511175
 2020-03-28 2020-08-07
 Portugal hCoV-19/Portugal/PT0918/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C2724T C3037T T7814C C14408T A20268G A23403G C28854T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511359
 2020-03-28 2020-08-07
 Portugal hCoV-19/Portugal/PT1400/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C8782T T12364A A19719T C26088T T28144C TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511370
 2020-03-28 2020-08-07
 Portugal hCoV-19/Portugal/PT1411/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T A11268G C14408T C18060T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511388
 2020-03-28 2020-08-07
 Portugal hCoV-19/Portugal/PT1429/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3140T C13059T C14408T A23403G G24077T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511423
 2020-03-28 2020-08-07
 Portugal hCoV-19/Portugal/PT1464/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3140T C13059T C14408T G20326A A23403G G24077T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511449
 2020-03-28 2020-08-07
 Portugal hCoV-19/Portugal/PT1490/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T T4608G C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511469
 2020-03-28 2020-08-07
 Portugal hCoV-19/Portugal/PT1510/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511520
 2020-03-28 2020-08-08
 Portugal hCoV-19/Portugal/PT0971/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C560T A2480G C2558T G11083T C14805T T24052C G26144T C29686T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511598
 2020-03-28 2020-08-08
 Portugal hCoV-19/Portugal/PT1051/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C2416T C2878T C3037T G8371T C14408T C21855T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511611
 2020-03-28 2020-08-08
 Portugal hCoV-19/Portugal/PT1064/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G2808A C3037T G11083T C14408T A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511612
 2020-03-28 2020-08-08
 Portugal hCoV-19/Portugal/PT1065/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G2808A C3037T G11083T C14408T A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511613
 2020-03-28 2020-08-08
 Portugal hCoV-19/Portugal/PT1066/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G2808A C3037T G11083T C14408T A23403G G24077T G25126A TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511615
 2020-03-28 2020-08-08
 Portugal hCoV-19/Portugal/PT1068/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T C15324T A23403G C26058T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511620
 2020-03-28 2020-08-08
 Portugal hCoV-19/Portugal/PT1073/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G2808A C3037T G11083T C14408T A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511621
 2020-03-28 2020-08-08
 Portugal hCoV-19/Portugal/PT1074/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G2808A C3037T G11083T C14408T A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511625
 2020-03-28 2020-08-08
 Portugal hCoV-19/Portugal/PT1078/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G2808A C3037T G11083T C14408T A23403G G24077T G24977C TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511626
 2020-03-28 2020-08-08
 Portugal hCoV-19/Portugal/PT1079/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G2808A C3037T G11083T C14408T A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511628
 2020-03-28 2020-08-08
 Portugal hCoV-19/Portugal/PT1081/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G2808A C3037T G11083T C14408T A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511630
 2020-03-28 2020-08-08
 Portugal hCoV-19/Portugal/PT1083/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3140T C14408T G19738A A23403G G24077T T28705C C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511631
 2020-03-28 2020-08-08
 Portugal hCoV-19/Portugal/PT1084/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G2808A C3037T G11083T C14408T A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511632
 2020-03-28 2020-08-08
 Portugal hCoV-19/Portugal/PT1085/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G2808A C3037T C6336T G11083T C14408T A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511634
 2020-03-28 2020-08-08
 Portugal hCoV-19/Portugal/PT1087/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G2808A C3037T G11083T C14408T A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511635
 2020-03-28 2020-08-08
 Portugal hCoV-19/Portugal/PT1088/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T G17944T A20268G A23403G G27382T C29640T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511637
 2020-03-28 2020-08-08
 Portugal hCoV-19/Portugal/PT1090/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3140T C14408T A23403G G24077T T28705C C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511638
 2020-03-28 2020-08-08
 Portugal hCoV-19/Portugal/PT1091/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G2808A C3037T G11083T C14408T A23403G G24077T T28282C TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511639
 2020-03-28 2020-08-08
 Portugal hCoV-19/Portugal/PT1092/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T G4162T C14408T A23403G A26530G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511640
 2020-03-28 2020-08-08
 Portugal hCoV-19/Portugal/PT1093/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3140T C14408T A23403G G24077T T28705C C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511647
 2020-03-28 2020-08-08
 Portugal hCoV-19/Portugal/PT1100/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- G1440A C2143T G2891A A6351G C10198T C10507T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511650
 2020-03-28 2020-08-08
 Portugal hCoV-19/Portugal/PT1103/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3140T C9344T C14408T A23403G G23954A G24077T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511674
 2020-03-28 2020-08-08
 Portugal hCoV-19/Portugal/PT1127/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C190T C241T C3037T C14408T A23403G GGG28881AAC A29770T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511759
 2020-03-28 2020-08-08
 Portugal hCoV-19/Portugal/PT1216/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T C21575T A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511760
 2020-03-28 2020-08-08
 Portugal hCoV-19/Portugal/PT1217/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T T2896C C3037T C14408T G22104T A23403G A24862G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511761
 2020-03-28 2020-08-08
 Portugal hCoV-19/Portugal/PT1218/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T T378C C3037T C4423T G10056A C14408T A17205G A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511764
 2020-03-28 2020-08-08
 Portugal hCoV-19/Portugal/PT1221/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3619T C14408T C17746T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511765
 2020-03-28 2020-08-08
 Portugal hCoV-19/Portugal/PT1222/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C2940T C3037T C14408T A23403G T26232C TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_512493
 2020-03-28 2020-08-11
 United Kingdom hCoV-19/Wales/PHWC-16967B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1648T C3037T C14408T A23403G C26204Y

EPI_ISL_513637
 2020-03-28 2020-08-13
 United States hCoV-19/USA/WA-UW-4758/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGT1- C241T C1059T C3037T G4975T C14408T A23403G G25523T G25563T T27869C GCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29742-

EPI_ISL_515283
 2020-03-28 2020-08-18
 United States hCoV-19/USA/WA-UW-4618/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGT1- C241T C1059T C3037T C14408T A23403G G25563T GCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29742-

EPI_ISL_515338
 2020-03-28 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0056/2020
 ATTAAA1- C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_515339
 2020-03-28 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0057/2020
 ATT1- C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_515521
 2020-03-28 2020-08-19
 Brazil hCoV-19/Brazil/SP-120/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C7834Y C14408T A23403G T27299C GGG28881AAC T29148C CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_515903
 2020-03-28 2020-08-20
 United States hCoV-19/USA/CA-CDPH010/2020
 ATTA1- C241T C1059T C3037T G8102T C14408T C14877Y A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_516335
 2020-03-28 2020-08-20
 United States hCoV-19/USA/MI-MDHHS-SC21608/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C2146Y C3037T C14408T A23403G C24715Y G25563T C25976A TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_516969
 2020-03-28 2020-08-24
 India hCoV-19/India/UP-NBRI-N40-TCQ729/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1938T C3037T C14408T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_517001
 2020-03-28 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A72F6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_517008
 2020-03-28 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A736C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T C14786T A23403G GGG28881AAC

EPI_ISL_517011
 2020-03-28 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A7399/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A1515G C9223T G11083T C14805T T17247C A17799G G26144T

EPI_ISL_517020
 2020-03-28 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A742D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C6573T C14408T A23403G C25528T GGG28881AAC

EPI_ISL_517024
 2020-03-28 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A7469/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T C15237Y A23403G GGG28881AAC

EPI_ISL_517025
 2020-03-28 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A7478/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C10138T C10931T G11083T C14805T G16975T C17104T G26144T

EPI_ISL_517031
 2020-03-28 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A750C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G7115T A11782G C14408T A23403G GGG28881AAC

EPI_ISL_517047
 2020-03-28 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A7609/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T A10323G C14408T A23403G C29870A

EPI_ISL_517055
 2020-03-28 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A76AF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T A5371G C14408T G19677T A23403G GGG28881AAC

EPI_ISL_517058
 2020-03-28 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A76DC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G8102T C14408T C16393Y A23403G GGG28881AAC C29870A

EPI_ISL_517059
 2020-03-28 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A76EB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A1515G C9223T G11083T C14805T T17247C G26144T

EPI_ISL_517061
 2020-03-28 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A7706/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C203T C241T C3037T C12138T C14408T A23403G GGG28881AAC C29870A

EPI_ISL_523475
 2020-03-28 2020-08-26
 Netherlands hCoV-19/Netherlands/un-EMC-720/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T514C C3037T C14408T A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_524527
 2020-03-28 2020-08-28
 United Kingdom hCoV-19/Scotland/GCVR-170D8B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A11794G C14408T C17410T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524545
 2020-03-28 2020-08-28
 United Kingdom hCoV-19/Scotland/GCVR-171BCC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524659
 2020-03-28 2020-08-28
 United Kingdom hCoV-19/England/LOND-12616E8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C19488T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524702
 2020-03-28 2020-08-28
 United Kingdom hCoV-19/England/LOND-12616CA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A19543C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525571
 2020-03-28 2020-08-31
 Italy hCoV-19/Italy/APU-UniMI-62PT/2020
 A1GGTCCCCGA C241T C450A C1415T C3037T G11521T C14408T A23403G

EPI_ISL_526808
 2020-03-28 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0588/2020
 A1- C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_526809
 2020-03-28 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0589/2020
 ATTAA1- C241T C1059T A2380G C3037T C6310T C14408T C14925T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_526811
 2020-03-28 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0591/2020
 AT1- T490A C3177T C6040T C8782T G12478A T18736C C24034T T26729C G28077C T28144C C28896G A29700G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_526812
 2020-03-28 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0592/2020
 ATTAAAGGTTT1- C241T C1059T A2380G C3037T C14408T C14925T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_526813
 2020-03-28 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0593/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C2416T C3037T C10712T C14408T A23403G T25304C G25563T C28890T

EPI_ISL_526815
 2020-03-28 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0595/2020
 AT1- T490A C3177T C6040T C8357T C8782T C8950T G12478A T18736C C24034T T26729C G28077C T28144C C28896G C29451T A29700G C29870A

EPI_ISL_526816
 2020-03-28 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0596/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1473T C2416T C3037T T5338C C10712T C14408T A23403G G25563T C29870A

EPI_ISL_526817
 2020-03-28 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0599/2020
 ATTAAAGGTTTATACCTTCCC1- C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_526820
 2020-03-28 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0603/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- A38G C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_526822
 2020-03-28 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0605/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T1918C C3037T C14408T C18877T A23403G G25563T G25906T

EPI_ISL_526823
 2020-03-28 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0606/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C2416T C3037T C3140T T5338C C10712T C14408T A23403G G25563T

EPI_ISL_526824
 2020-03-28 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0607/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_526826
 2020-03-28 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0609/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T A652T C1059T C3037T C14408T A23403G G25563T C27688T AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_530049
 2020-03-28 2020-09-10
 Spain hCoV-19/Spain/MD-LP45/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2919T C3037T A3234G C13072T C14408T A20268G A23403G ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_530274
 2020-03-28 2020-09-11
 Australia hCoV-19/Australia/QLD1014/2020/P1
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C1059T C3037T C10851T C14408T G20931T A23403G C23439T G25563T AAA29901-

EPI_ISL_534822
 2020-03-28 2020-09-14
 United Kingdom hCoV-19/England/OXON-B2EB8/2020
 C241T C313T C3037T C14408T G19518T A23403G G28845T GGG28881AAC AAAAA29899-

EPI_ISL_534893
 2020-03-28 2020-09-14
 United Kingdom hCoV-19/England/OXON-B38F5/2020
 C241T A2869G C3037T C14408T A23403G GGG28881AAC C29095T AA29886RR AA29891RR AA29896RR

EPI_ISL_534929
 2020-03-28 2020-09-14
 United Kingdom hCoV-19/England/OXON-B40A1/2020
 A12R C241T C3037T C10818T C14408T A23403G G24781T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_536283
 2020-03-28 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00241514/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C313T C3037T C14408T A23403G C25904T GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_536284
 2020-03-28 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00241602/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G C25433T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_536286
 2020-03-28 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00241648/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T G19429T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_536290
 2020-03-28 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00241782/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G C25433T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536291
 2020-03-28 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00241862/2020
 ATTAAAGGTTTA1- C241T C3037T C3373A G10201T C14408T A23403G GGG28881AAC C29520T C29585T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_536292
 2020-03-28 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00241900/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_536293
 2020-03-28 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00241901/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C18877T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_536294
 2020-03-28 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00241907/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C313T C3037T C14408T A23403G C25904T A28578G GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_536295
 2020-03-28 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00241909/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A20268G A23403G C26313T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_536296
 2020-03-28 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00241924/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2062T C3037T C14408T G14712T T19839C G19851T A23403G G23621A GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_536297
 2020-03-28 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00241945/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_536299
 2020-03-28 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00241959/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T T1623C C3037T C6730T G14028T C14408T A23403G G25563T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_536300
 2020-03-28 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00241965/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T T5422C C14408T C15324T A23403G C25433T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_536301
 2020-03-28 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00241993/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T T1623C C3037T C6730T G14028T C14408T A23403G G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_536302
 2020-03-28 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00242011/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T A13768G C14408T A20268G A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_536303
 2020-03-28 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00242018/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2416T C3037T G8371T C14408T A23403G C23635T G25563T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_536304
 2020-03-28 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00242019/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T A13768G C14408T A20268G A23403G TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_536305
 2020-03-28 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00242033/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C8293T C14408T T18488C A23403G T24739C A26530G CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_536306
 2020-03-28 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00242035/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25217T G25563T C29835T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_536308
 2020-03-28 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00242051/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T AAGTCATTT686- C1059T G2808A C3037T C14408T A23403G G25563T A26433G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_536309
 2020-03-28 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00242105/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T AAGTCATTT686- C1059T G2808A C3037T C14408T A23403G G25563T A26433G TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_537583
 2020-03-28 2020-09-16
 United States hCoV-19/USA/CA-UCLA-57/2020
 ATTAAAG1- C241T C379A C1059T C3037T C14408T A23403G G25563T GTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29828-

EPI_ISL_537590
 2020-03-28 2020-09-16
 United States hCoV-19/USA/CA-UCLA-65/2020
 ATTAAAGGTTTA1- C241T C379A C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_537607
 2020-03-28 2020-09-16
 United States hCoV-19/USA/CA-UCLA-98/2020
 ATTAAAGGTTTATACCTTCCC1- C241T C3037T C14408T C19813T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_538328
 2020-03-28 2020-09-16
 Canada hCoV-19/Canada/ON-OICR-SLB2796/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_538329
 2020-03-28 2020-09-16
 Canada hCoV-19/Canada/ON-OICR-SLB2797/2020
 ATTAAAGGTTTA1- C241T C3037T C14408T A20268G A23403G TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_538331
 2020-03-28 2020-09-16
 Canada hCoV-19/Canada/ON-OICR-SLB2799/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C14408T A23403G G25563T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_538332
 2020-03-28 2020-09-16
 Canada hCoV-19/Canada/ON-OICR-SLB2800/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C11916T C14408T A23403G C24990T G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_538460
 2020-03-28 2020-09-17
 Singapore hCoV-19/Singapore/928/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6312A G11083T C13730T C23929T C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538461
 2020-03-28 2020-09-17
 Singapore hCoV-19/Singapore/929/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T8788C C14408T A23403G G25563T G26951A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538912
 2020-03-28 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9B42/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7633Y C14408T C18657Y A20268G A23403G C27442Y C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538925
 2020-03-28 2020-09-17
 United Kingdom hCoV-19/England/LEED-2AA455/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1884T C2416T C3037T T8335C C14408T A23403G C25508T G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538938
 2020-03-28 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9E3A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G G24197T G25563T C26735T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538955
 2020-03-28 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9CE5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G26615T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538962
 2020-03-28 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9D6A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538974
 2020-03-28 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9E49/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538993
 2020-03-28 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A83C3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241Y C2558Y C3037Y G11083K C14408Y C14805Y C18877Y A23403R G24197K G25563K G26144K C26735Y G28851K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539055
 2020-03-28 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A83A5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T9167C G11083T C14805T C17156T G26144T C28409T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539169
 2020-03-28 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8484/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8722Y C14408T C17104T A20268G A23403G G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539195
 2020-03-28 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A84EE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25471T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541345
 2020-03-28 2020-09-22
 Brazil hCoV-19/Brazil/PR-5622/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C1059T C3037T T13864C C14408T A16319W C16536S A16638W A17294R A23403G G25563T G29737S CGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29743-

EPI_ISL_548993
 2020-03-28 2020-09-28
 Singapore hCoV-19/Singapore/985/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C6310A C6312A G11083T C13730T C19524T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_560386
 2020-03-28 2020-09-29
 Botswana hCoV-19/Botswana/BOT0455/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560578
 2020-03-28 2020-09-29
 France hCoV-19/France/CVL8289/2020
 A26- C28T C241T C3037T C14408T C15324T A23403G A29876R A29879R AAAAAAAAAAAAAAAAAAAAAA29882-

EPI_ISL_560627
 2020-03-28 2020-09-29
 France hCoV-19/France/GE8789/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11124T C14408T C15324T C22432T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_565959
 2020-03-28 2020-09-30
 United States hCoV-19/USA/MI-MDHHS-SC21898/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T C18877T A23403G G25563T TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_568693
 2020-03-28 2020-10-02
 Indonesia hCoV-19/Indonesia/PP-EIJK-11/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT293185
 2020-03-28 2020-04-03
 United States SARS-CoV-2/human/USACT-UW420/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAA1- C8782T C17747T A17858G C18060T T28144C AAAA29900-

MT293188
 2020-03-28 2020-04-03
 United States SARS-CoV-2/human/USACT-UW423/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTG1- T5098C C8782T C17747T A17858G C18060T G21255C T28144C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

MT293192
 2020-03-28 2020-04-03
 United States SARS-CoV-2/human/USACT-UW427/2020
 ATTAAAGGT1- TACCTTCCCAGGTAACAAACCAACC13- C8782T C17747T A17858G C18060T T28144C C29733T A29903-

MT293195
 2020-03-28 2020-04-03
 United States SARS-CoV-2/human/USACT-UW430/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C241T C1059T C3037T C14408T A23403G G25563T A29903-

MT380733
 2020-03-28 2020-04-24
 United States SARS-CoV-2/human/USA/DC-CDC-1738/2020
 C241T C1059T C3037T C14408T C16260T A23403G G25563T G26690T C28821A AAAAAAAAAAAAAAAAAAAAA29883-

MT459838
 2020-03-28 2020-05-11
 Greece SARS-CoV-2/human/GRC/36_36859/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A22124G A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

MT477847
 2020-03-28 2020-05-14
 United States SARS-CoV-2/human/USA/AK070/2020
 ATTAAAGGTTTA1- C241T C1059T C3037T C14408T A23403G G25523T G25563T T27869C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

MT706363
 2020-03-28 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-235/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A G922A C3177T C8782T T18736C A22003G C24034T T26729C G28077C T28144C A29282T A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706370
 2020-03-28 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-242/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T15354C C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706371
 2020-03-28 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-243/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706372
 2020-03-28 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-244/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706373
 2020-03-28 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-245/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C8782T C9113T T18736C C21648T C24034T T26729C C27635T G28077C T28144C A29567C A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706374
 2020-03-28 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-247/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A532G C29119T G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706375
 2020-03-28 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-248/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT810814
 2020-03-28 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1428-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C9891T C14408T C16762T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810815
 2020-03-28 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1430-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C9891T C14408T C16762T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810822
 2020-03-28 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1441-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T C18877T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810823
 2020-03-28 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1443-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C1887T C3037T C14408T G17347T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810824
 2020-03-28 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1444-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T C16762T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810825
 2020-03-28 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1446-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T C16762T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810924
 2020-03-28 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0188-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C1887T C3037T C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810929
 2020-03-28 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0195-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C10450T G11083T C14805T T17247C G26144T C28399T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811179
 2020-03-28 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0128-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C1887T C3037T C14408T A17615G A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811180
 2020-03-28 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0130-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811312
 2020-03-28 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0682-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T C16762T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811322
 2020-03-28 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0698-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- A6042G C8782T T9477A C14805T GTA19518- G25979T T28144C C28657T C28863T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811323
 2020-03-28 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0699-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T A8252G G11083T C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811324
 2020-03-28 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0700-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C1887T C3037T C14408T G21220T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811325
 2020-03-28 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0701-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C1887T C3037T C14408T A23403G G25563T C28775T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811333
 2020-03-28 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0715-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T G15732T T19143C A20268G A23403G CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811434
 2020-03-28 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0943-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C1887T C3037T C14408T A17615G A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811436
 2020-03-28 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0945-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T A8252G G11083T C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811655
 2020-03-28 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0141-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T G13082T C14408T A23403G G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811660
 2020-03-28 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0146-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C10188T G11083T C14408T A23403G T24982C G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811675
 2020-03-28 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0161-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T A23403G G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811677
 2020-03-28 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0163-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T T6394C C10319T C14408T C16859T A23403G G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT873452
 2020-03-28 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00013/2020
 A1- C241T C2416T C3037T C8281T C14408T A22007T A23403G G25563T G26233T

MW001287
 2020-03-28 2020-09-14
 United States SARS-CoV-2/human/USA/CCLB-TCE/2020
 C8782T C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

MW001288
 2020-03-28 2020-09-14
 United States SARS-CoV-2/human/USA/E6-TCE/2020
 C8782T C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

NMDC60013210
 2020-03-28 2020-06-01
 China hCoV-19/Guangzhou/ID085/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A13711G C14408T G18315- A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

NMDC60013214
 2020-03-28 2020-06-01
 China hCoV-19/Guangzhou/ID078/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

NMDC60013225
 2020-03-28 2020-06-01
 China hCoV-19/Guangzhou/ID079/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C5654T C14408T G16846T A23403G G25563T C29730T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

NMDC60013251
 2020-03-28 2020-06-01
 China hCoV-19/Guangzhou/ID087/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A A6944G C11200T T13422A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_419651
 2020-03-29 2020-04-03
 United States hCoV-19/USA/WI-GMF-00466/2020
 C241T C1059T C3037T C11224T C14408T C15654T A23403G G25563T

EPI_ISL_420159
 2020-03-29 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C07BC/2020
 C241T C3037T C14408T C21614T A23403G

EPI_ISL_420200
 2020-03-29 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C04C4/2020
 C241T C3037T C14408T C22009T A23403G C27046T C27595T GGG28881AAC

EPI_ISL_420202
 2020-03-29 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C04B5/2020
 C241T C3037T C14408T C18713T A23403G GGG28881AAC

EPI_ISL_420203
 2020-03-29 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C045B/2020
 C241T C3037T C14408T A23403G C24912T C25350T

EPI_ISL_420205
 2020-03-29 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C034F/2020
 C241T C3037T C5284T C13862T C14408T A23403G G28396T C28836T

EPI_ISL_420213
 2020-03-29 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C04D3/2020
 C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_420216
 2020-03-29 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C0312/2020
 C241T C3037T C14408T C20133T A21137G A23403G C28657T

EPI_ISL_420221
 2020-03-29 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C03E5/2020
 C241T C1059T C3037T C14408T C16260T A23403G G24368T G25563T C27654T

EPI_ISL_420222
 2020-03-29 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C02F7/2020
 C1457T A2480G C2558T G11083T C14805T G26144T C26340T

EPI_ISL_420692
 2020-03-29 2020-04-06
 United Kingdom hCoV-19/England/20139047104/2020
 G11083T C14805T T17247C G26144T

EPI_ISL_420697
 2020-03-29 2020-04-06
 United Kingdom hCoV-19/England/20139047804/2020
 C241T C3037T C14408T C19820Y A20268G T22342Y A23403G

EPI_ISL_421174
 2020-03-29 2020-04-07
 Spain hCoV-19/Spain/Madrid_H12_1804/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11801A C14408T A20268G A23403G G25218T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421175
 2020-03-29 2020-04-07
 Spain hCoV-19/Spain/Madrid_H12_1905/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T17664C A20268G A23403G C26681T G29473A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_422017
 2020-03-29 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-2711F/2020
 G1589R ATG1605- T4949C G11831A C16887T G18583K G18651A G20893T

EPI_ISL_422024
 2020-03-29 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-26B12/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T C829T C1059T C3037T C14408T A23403G G25563T G28371T

EPI_ISL_422030
 2020-03-29 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-270B8/2020
 C241T C3037T C3792T C14408T A23403G T24376C

EPI_ISL_422036
 2020-03-29 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-26A15/2020
 ATTAAAGGTTTATAC1- C241T C1281T C3037T G6352T C14408T A23403G G27561T GGG28881AAC

EPI_ISL_422043
 2020-03-29 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-269DC/2020
 ATTAAAGGTT1- C241T C3037T C14408T C14741T A17256R A23403G

EPI_ISL_422044
 2020-03-29 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-26E19/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_422054
 2020-03-29 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-26F9E/2020
 A1- C241T C3037T C14408T A23403G T26512C G27670T

EPI_ISL_422069
 2020-03-29 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-270A9/2020
 C241T C3037T C14408T C16289T A23403G G25429T

EPI_ISL_422075
 2020-03-29 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-26E46/2020
 C241T C3037T C14408T C19170T G19509A G23285T A23403G G23429T GGG28881AAC

EPI_ISL_422079
 2020-03-29 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-26E37/2020
 AT1- C21Y C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_422086
 2020-03-29 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-2708B/2020
 C241T C1059T C3037T C14408T C16329T A18639G A23403G C23536T G25563T C25731T C29625T

EPI_ISL_422093
 2020-03-29 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-2707C/2020
 ATTA1- ATG1605- C27219T

EPI_ISL_422103
 2020-03-29 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-26C00/2020
 C241T C3037T C14408T A23403G C28744Y GGG28881AAC

EPI_ISL_422124
 2020-03-29 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-2715B/2020
 ATTA1- C241T C1059T G1126T C3037T C10376T C14408T G18583T A23403G G24368T G25563T G29773T

EPI_ISL_422140
 2020-03-29 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-26F8F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C14408T A23403G

EPI_ISL_422777 LR877970
 2020-03-29 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_243/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G24368T G25563T G29440A GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422778 LR877969
 2020-03-29 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_244/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2113T C3037T C7765T C14408T C17690T C18877T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422784 LR877982
 2020-03-29 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_250/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1044T C3037T C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422785 LR877986
 2020-03-29 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_251/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422903 LR877994
 2020-03-29 2020-04-11
 Netherlands hCoV-19/Netherlands/ZuidHolland_104/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T13006C C14408T T18630C A23403G G25563T C25688T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422957 LR877979
 2020-03-29 2020-04-11
 Netherlands hCoV-19/Netherlands/ZuidHolland_90/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G12550A C14408T A20268G C20740A G20758A A23403G G26501T G29734C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422960 LR877990
 2020-03-29 2020-04-11
 Netherlands hCoV-19/Netherlands/ZuidHolland_93/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18788T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_423352
 2020-03-29 2020-04-12
 United Kingdom hCoV-19/England/20139064904/2020
 C8782T T9477A C14805T G25979T G26227K T28144C C28657T C28863T

EPI_ISL_423354
 2020-03-29 2020-04-12
 United Kingdom hCoV-19/England/20139065404/2020
 C241T C3037T C14408T G20569T A23403G GGG28881AAC

EPI_ISL_423357
 2020-03-29 2020-04-12
 United Kingdom hCoV-19/England/20139068504/2020
 A2480G C2558T G11083T C14805T G26144T C28331T G28380T

EPI_ISL_423359
 2020-03-29 2020-04-12
 United Kingdom hCoV-19/England/20139069104/2020
 C1514T ATG1605- C5497Y T12027C C20270T G28179A A29683T

EPI_ISL_423360
 2020-03-29 2020-04-12
 United Kingdom hCoV-19/England/20139069404/2020
 C241T C3037T C14408T A23403G G25429T G28812K

EPI_ISL_423365
 2020-03-29 2020-04-12
 United Kingdom hCoV-19/England/20139072204/2020
 C241T C3037T C14408T A23403G G25429T

EPI_ISL_423366
 2020-03-29 2020-04-12
 United Kingdom hCoV-19/England/20140000304/2020
 G1440A G2891R C4668T

EPI_ISL_423368
 2020-03-29 2020-04-12
 United Kingdom hCoV-19/England/20140000604/2020
 C241T C3037T C14408T A23403G T27212Y G27238T

EPI_ISL_423371
 2020-03-29 2020-04-12
 United Kingdom hCoV-19/England/20140002204/2020
 A2480G C2558T G11083T C14805T C23127T G26144T

EPI_ISL_423382
 2020-03-29 2020-04-12
 United Kingdom hCoV-19/England/20140007004/2020
 C241T C1059T C3037T C14408T A23403G G25563T A28874R

EPI_ISL_423398
 2020-03-29 2020-04-12
 United Kingdom hCoV-19/England/20140066004/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_423399
 2020-03-29 2020-04-12
 United Kingdom hCoV-19/England/20140066204/2020
 C110T C241T G1883R C2416T C3037T C7800Y C14408T C17069A C18557T G20578T C21997Y T22417Y A23403G G25563T

EPI_ISL_423401
 2020-03-29 2020-04-12
 United Kingdom hCoV-19/England/20140068904/2020
 C241T C3037T C14408T A23403G C25350Y

EPI_ISL_423412
 2020-03-29 2020-04-12
 United Kingdom hCoV-19/England/20140071404/2020
 C241T C3037T C3373A C11195T C14408T G20580K A23403G C27557Y GGG28881AAC

EPI_ISL_423413
 2020-03-29 2020-04-12
 United Kingdom hCoV-19/England/20140071504/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_423451
 2020-03-29 2020-04-12
 United Kingdom hCoV-19/England/20142024404/2020
 C241T C3037T G10870K C14408T A14906R A23403G G25429T C25916T

EPI_ISL_423453
 2020-03-29 2020-04-12
 United Kingdom hCoV-19/England/20142026304/2020
 C241T C2416T C3037T C14408T C14786T C16466Y C19955A G20578T A23403G G25563T

EPI_ISL_424347
 2020-03-29 2020-04-13
 United States hCoV-19/USA/AK-PHL077/2020
 ATTAAAGGTTTATAC1- C241T C3037T C6504T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_424555
 2020-03-29 2020-04-13
 Iceland hCoV-19/Iceland/535/2020
 A2480G C2558T C7420T G11083T C14805T G26144T C28887T

EPI_ISL_424556
 2020-03-29 2020-04-13
 Iceland hCoV-19/Iceland/536/2020
 C5142T G11083T T14141C C14805T T17247C G26144T

EPI_ISL_424609
 2020-03-29 2020-04-13
 Iceland hCoV-19/Iceland/589/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_425234
 2020-03-29 2020-04-14
 United Kingdom hCoV-19/England/CAMB-7377C/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_425250
 2020-03-29 2020-04-14
 United Kingdom hCoV-19/England/CAMB-738B5/2020
 C241T C3037T C14408T A23403G C24374T GGG28881AAC

EPI_ISL_425253
 2020-03-29 2020-04-14
 United Kingdom hCoV-19/England/CAMB-738E2/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_425260
 2020-03-29 2020-04-14
 United Kingdom hCoV-19/England/CAMB-73994/2020
 C241T C3037T C14408T A20268G A23403G C24374T G29734C

EPI_ISL_425312
 2020-03-29 2020-04-14
 United Kingdom hCoV-19/England/CAMB-745CC/2020
 A187G C241T C3037T C14408T A23403G

EPI_ISL_425323
 2020-03-29 2020-04-14
 United Kingdom hCoV-19/England/CAMB-746AB/2020
 C241T C3037T C14408T G22131A A23403G GGG28881AAC A29403G

EPI_ISL_425324
 2020-03-29 2020-04-14
 United Kingdom hCoV-19/England/CAMB-746BA/2020
 T514C ATG1605-

EPI_ISL_425325
 2020-03-29 2020-04-14
 United Kingdom hCoV-19/England/CAMB-746D8/2020
 A2480G C2558T G11083T A14185T C14805T G26062T G26144T

EPI_ISL_425326
 2020-03-29 2020-04-14
 United Kingdom hCoV-19/England/CAMB-74702/2020
 C241T C3037T C14408T C19366T A23403G GGG28881AAC

EPI_ISL_425327
 2020-03-29 2020-04-14
 United Kingdom hCoV-19/England/CAMB-74711/2020
 C241T C3037T C14408T A23403G G25429T

EPI_ISL_425331
 2020-03-29 2020-04-14
 United Kingdom hCoV-19/England/CAMB-7475D/2020
 C241T C3037T C14408T C19366T A23403G GGG28881AAC

EPI_ISL_425332
 2020-03-29 2020-04-14
 United Kingdom hCoV-19/England/CAMB-7476C/2020
 C241T AAGTCATTT686- C3037T T7216C C14408T C16468T A23403G G24488T G25012T GGG28881AAC

EPI_ISL_425333
 2020-03-29 2020-04-14
 United Kingdom hCoV-19/England/CAMB-7477B/2020
 C241T C3037T C14408T A23403G A26530G G28739T

EPI_ISL_425611
 2020-03-29 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10E8FA/2020
 C241T C3037T A9409G C14408T A23403G C25613T G29440A

EPI_ISL_425614
 2020-03-29 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10E933/2020
 G1440A G2891A C10507T

EPI_ISL_425630
 2020-03-29 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10EA5E/2020
 A2480G C2558T G11083T C11962T G14580T C14805T C21575T G26144T

EPI_ISL_425631
 2020-03-29 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10EA6D/2020
 C241T C3037T C14408T C15613T C18877T A23403G G24197T G25563T C26735T

EPI_ISL_425633
 2020-03-29 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10EA8B/2020
 A1412G A1515G C9223T G11083T C14805T T17247C G26144T

EPI_ISL_425967
 2020-03-29 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB300/2020
 C241T C2399T C3037T C14408T C15240T A23403G GGG28881AAC

EPI_ISL_425979
 2020-03-29 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB355/2020
 C7423T

EPI_ISL_425982
 2020-03-29 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB363/2020
 C241T C3037T C10798A C13862T C14408T A23403G G28361C C28836T

EPI_ISL_425999
 2020-03-29 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB401/2020
 

EPI_ISL_426004
 2020-03-29 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB413/2020
 

EPI_ISL_426074 MT345887
 2020-03-29 2020-04-14
 United States SARS-CoV-2/human/USA/ID-UW-4448/2020
 ATTAAAGGTTTATACCTTCCCA1- C36T C241T T400C T833C C1059T C3037T C5934T C14408T C21575T A23403G G25563T C27964T AAAAA29899-

EPI_ISL_426075 MT345888
 2020-03-29 2020-04-14
 United States SARS-CoV-2/human/USA/ID-UW-4461/2020
 ATTAAAGGTTTATACCTTCCC1- A31T C36T C241T C3037T C14408T A20268G A23403G TG29867AA C29870A

EPI_ISL_426076 MT345878
 2020-03-29 2020-04-14
 United States SARS-CoV-2/human/USA/OR-UW-4388/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C36T C241T C1059T C3037T C14408T A23403G G25563T TG29867-A C29870A

EPI_ISL_426379
 2020-03-29 2020-04-16
 Slovenia hCoV-19/Slovenia/MB0329/2020
 ATTAAAGGTTTATACCTT1- C6312A G11083T C13730T C19524T C23929T C28311T A29865C T29867C A29869C AAA29872GCG AAAAAAAAAAAA29876GCCGGGCTTCTT AAA29889CCC AAA29893TTT AAAAA29899GTTTG

EPI_ISL_426462 MT350244
 2020-03-29 2020-04-17
 United States SARS-CoV-2/human/USA/VA-DCLS-0054/2020
 C241T T1918C C3037T C14408T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_426463 MT350245
 2020-03-29 2020-04-17
 United States SARS-CoV-2/human/USA/VA-DCLS-0055/2020
 ATTAAA1- A38R C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_426897 MT517434
 2020-03-29 2020-04-17
 Czech Republic SARS-CoV-2/human/CZE/IAB_23/2020
 ATTAAAGGTTTAT1- G160A C241T C3037T C6026T T7438C C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_426931 MT451433
 2020-03-29 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC627/2020
 C1076T G1397A -11075TTT G11083T C27964T T28688C G29742T

EPI_ISL_426932 MT451434
 2020-03-29 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC628/2020
 C241T C3037T T7438C C14408T A23403G T24152C C29353T

EPI_ISL_426934 MT451441
 2020-03-29 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC638/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_426935 MT451442
 2020-03-29 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC639/2020
 C241T C3037T A9707G C14408T C18877T A23403G G25563T

EPI_ISL_426977 MT451478
 2020-03-29 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC682/2020
 C241T C3037T C14408T A23403G

EPI_ISL_426997
 2020-03-29 2020-04-17
 Australia hCoV-19/Australia/VIC710/2020
 ATG1605- A1904G C8090T C10789T C21575T

EPI_ISL_426999 MT451496
 2020-03-29 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC712/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_427172 MT358705
 2020-03-29 2020-04-17
 United States SARS-CoV-2/human/USA/ID-UW-4486/2020
 A1G A4D C36T C241T C1059T C3037T C14408T A16947G A23403G G25563T -29904AAAAAAA

EPI_ISL_427224 MT358730
 2020-03-29 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-3983/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C241T C1059T C3037T T8883C TT8885AA C14408T T21146A G21151T A23403G G25563T G29553A AAAA29900-

EPI_ISL_427225 MT358731
 2020-03-29 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-3984/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCA1- C241T C1059T C2156T C3037T C14408T T21146D A23403G G25563T C28093T -29904AAAANAHAGM

EPI_ISL_427226 MT358732
 2020-03-29 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-3985/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_427227 MT358733
 2020-03-29 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-3986/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- AACC34HTTH C241T C1059T C3037T C14408T A23403G G25563T C27625T AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_427228 MT358734
 2020-03-29 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-3988/2020
 TTA2AGT C241T C1059T C3037T C14408T A23403G G25563T G29553A -29904AAAAAAAAAAAAAAAA

EPI_ISL_427230 MT358736
 2020-03-29 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-3990/2020
 A1G T10A T13A C241T C1059T C3037T C14408T T21146A A23403G C24904T G25563T G29553A AA29902-

EPI_ISL_427234 MT358739
 2020-03-29 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-3997/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TH C241T C1059T C3037T T8883C TT8885AA AGG13512TTA C14408T T21146A G21151T A23403G G25563T G29553A

EPI_ISL_427236 MT358741
 2020-03-29 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-4038/2020
 ATTAAAGGTTTATA1- C241T C1059T C3037T C12880T C14408T T21146A A23403G G25563T G29553A AAAAAAAAAAAAAA29890-

EPI_ISL_427237 MT358742
 2020-03-29 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-4039/2020
 ATTAAAGGTTTATA1- G2840A G5572T C8782T C17747T A17858G C18060T A26045G T28144C A29903-

EPI_ISL_427264 MT358669
 2020-03-29 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-4329/2020
 A1- A31T AAC34TTT C241T TAAAGTCAT684- C3037T C6636T C14408T C18877T C21575T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_427310
 2020-03-29 2020-04-18
 Russia hCoV-19/Russia/StPetersburg-RII4382V/2020
 C241T C3037T C14408T A20268G A23403G

EPI_ISL_427311
 2020-03-29 2020-04-18
 Russia hCoV-19/Russia/StPetersburg-RII4384V/2020
 C241T C3037T C14408T A20268G A23403G

EPI_ISL_427312
 2020-03-29 2020-04-18
 Russia hCoV-19/Russia/StPetersburg-RII4386V/2020
 C241T C1059T C3037T C14408T A20755C A23403G G25563T

EPI_ISL_428257
 2020-03-29 2020-04-20
 United States hCoV-19/USA/WI-UW-161/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G6894T C19029T G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428258
 2020-03-29 2020-04-20
 United States hCoV-19/USA/WI-UW-162/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C10626T G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428899
 2020-03-29 2020-04-22
 Russia hCoV-19/Russia/Buryatia-86204/2020
 C241T C3037T G4201T C14408T A23403G C26527T

EPI_ISL_428929
 2020-03-29 2020-04-22
 Poland hCoV-19/Poland/PL_P6/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T A544G C3037T T7767C C14408T A23403G AGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29827-

EPI_ISL_428930
 2020-03-29 2020-04-22
 Poland hCoV-19/Poland/PL_P7/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C2416T C3037T C14408T C14786T G20578T A23403G G25563T AGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29827-

EPI_ISL_429201
 2020-03-29 2020-04-23
 Switzerland hCoV-19/Switzerland/GE2297/2020
 ATTAAAG1- C241T C1059T C3037T C4320T C14408T A23403G G25563T C25688T

EPI_ISL_429601 MT375431
 2020-03-29 2020-04-23
 United States SARS-CoV-2/human/USA/ID-UW-4552/2020
 ATTAAAGGTTTAT1- AACC30CTTT C36T C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T

EPI_ISL_429604
 2020-03-29 2020-04-23
 United States hCoV-19/USA/WA-UW-4568/2020
 ATTAAAGGTTTAT1- T78A C241T C1059T C3037T T8883C TT8885AA C14408T T21146A G21151T TAG22254CCT T22258A TT22260GA A23403G G25563T G29553A

EPI_ISL_429616 MT375445
 2020-03-29 2020-04-23
 United States SARS-CoV-2/human/USA/WA-UW-4732/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TM C241T C1059T C3037T A10579G C14408T A23403G G25563T A29873C A29903-

EPI_ISL_429716
 2020-03-29 2020-04-24
 Luxembourg hCoV-19/Luxembourg/LNS7032690/2020
 C241T G1524A C3037T A4235G C14408T A23403G T28902C AAAAAAAA29896-

EPI_ISL_429755
 2020-03-29 2020-04-24
 Luxembourg hCoV-19/Luxembourg/LNS8772889/2020
 C241T G1524A C3037T A4235G C14408T A23403G T28902C GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_429782
 2020-03-29 2020-04-24
 Luxembourg hCoV-19/Luxembourg/LNS3169999/2020
 C241T C3037T C14408T C15324T T19519A A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_429882
 2020-03-29 2020-04-24
 Taiwan hCoV-19/Taiwan/299/2020
 C6312A G11083T C11941T C13730T C23929T G25106C C28311T AAAAAAAAAAAA29892-

EPI_ISL_429974 MT415899
 2020-03-29 2020-04-24
 United States SARS-CoV-2/human/USA/VA-DCLS-0075/2020
 ATTAAA1- C241T C2416T C3037T G4523A C10712T C14408T A23403G G25563T

EPI_ISL_430542 MT451666
 2020-03-29 2020-04-27
 Australia SARS-CoV-2/human/AUS/VIC978/2020
 C4540T C8782T T9477A C14805T G23909K G25979T T28144C C28311T C28657T C28863T

EPI_ISL_430948 MT412305
 2020-03-29 2020-04-28
 United States SARS-CoV-2/human/USA/ID-UW-4383/2020
 C36T C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T C29870A -29904AAAAAAAAAAAAAAAAAA

EPI_ISL_430949 MT412306
 2020-03-29 2020-04-28
 United States SARS-CoV-2/human/USA/ID-UW-4402/2020
 ATTAAA1- C36T C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T TG29867AA C29870A -29904AAAAAAAAAAAAAAAAAA

EPI_ISL_430950 MT412307
 2020-03-29 2020-04-28
 United States SARS-CoV-2/human/USA/OR-UW-4410/2020
 ATTAAA1- A34H C36T C241T C3037T C7945T C10416T C14408T C18877T A23403G G25563T G29864A TG29867AA C29870A -29904AAAAAAAAAAAAAAAA

EPI_ISL_432480
 2020-03-29 2020-04-29
 United Kingdom hCoV-19/England/SHEF-CA020/2020
 C241T C3037T C14408T C16289T A23403G G25429T

EPI_ISL_432548
 2020-03-29 2020-04-29
 United Kingdom hCoV-19/England/SHEF-CD737/2020
 C241T C3037T C14408T A17892G T19839C A23403G G25552T GGG28881AAC

EPI_ISL_432724
 2020-03-29 2020-04-29
 United Kingdom hCoV-19/England/SHEF-C151B/2020
 ATG1605- A1904G C8090T C10789T A12796C

EPI_ISL_432753
 2020-03-29 2020-04-29
 United Kingdom hCoV-19/England/SHEF-C2CF7/2020
 C241T C3037T C14408T C18713T A23403G GGG28881AAC

EPI_ISL_432786
 2020-03-29 2020-04-29
 United Kingdom hCoV-19/England/SHEF-C426C/2020
 G11083T C14805T G26144T

EPI_ISL_432837
 2020-03-29 2020-04-29
 United Kingdom hCoV-19/England/SHEF-C7296/2020
 C241T C3037T T7438C C8660T G10097A C14408T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_433364
 2020-03-29 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR942/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G5230T C14408T A23403G G23948T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_433371
 2020-03-29 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR987/2020
 ATG1605- C12710T C28854T

EPI_ISL_433505
 2020-03-29 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR1068/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_433507
 2020-03-29 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR1081/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A T13216G C14408T C18929T A23403G C23731T C25797T GGG28881AAC ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_433509
 2020-03-29 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR1093/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_433510
 2020-03-29 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR1101/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C20283T C21034T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_433511
 2020-03-29 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR1115/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C12710T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_433515
 2020-03-29 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR1133b/2020
 C4540T C8782T T9477A C14805T C25714T G25979T C26029A T28144C C28657T C28863T

EPI_ISL_434141 MT632849
 2020-03-29 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S381/2020
 C241T C379A C1059T T2244C C3037T A10761G C14408T A23403G G25563T

EPI_ISL_434170 MT632841
 2020-03-29 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S410/2020
 G1401A C8782T T13438C T16863C C17747T A17858G C18060T T28144C

EPI_ISL_434176 MT633033
 2020-03-29 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S416/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434261 MT632811
 2020-03-29 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S501/2020
 C241T C379A C1059T T2244C C3037T G10753T C14408T C20759T A23403G G25563T

EPI_ISL_434265 MT632833
 2020-03-29 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S505/2020
 A6693G C8782T C14877T C17747T A17858G C18060T T28144C C28519T A29188T

EPI_ISL_434274 MT633000
 2020-03-29 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S514/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_434278 MT632924
 2020-03-29 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S518/2020
 C241T C1059T C3037T C14408T A23403G G25563T G29553A

EPI_ISL_434316 MT632904
 2020-03-29 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S556/2020
 G1401A C8782T C17747T A17858G C18060T T28144C T28582C

EPI_ISL_434326 MT632822
 2020-03-29 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S566/2020
 G4790A C8782T C15738T C18060T G18210T T24805C A27095T T28144C G28907T A29824G

EPI_ISL_434336 MT632821
 2020-03-29 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S576/2020
 A6693G C8782T C14877T C17747T A17858G C18060T T28144C C28519T A29188T

EPI_ISL_434360
 2020-03-29 2020-04-29
 Belgium hCoV-19/Belgium/UGent-44/2020
 C241T C3037T C14408T T19839C A23403G C24099T C27981T GGG28881AAC

EPI_ISL_434361
 2020-03-29 2020-04-29
 Belgium hCoV-19/Belgium/UGent-45/2020
 C241T C3037T G4255T C14408T A23403G A26530G

EPI_ISL_434362
 2020-03-29 2020-04-29
 Belgium hCoV-19/Belgium/UGent-46/2020
 C241T C3037T C14408T T19839C A23403G C24099T C27981T GGG28881AAC

EPI_ISL_434459
 2020-03-29 2020-04-29
 Greece hCoV-19/Greece/35/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- A2480G C2558T G11083T C14805T C20402T G24926T G26144T TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_434461
 2020-03-29 2020-04-29
 Greece hCoV-19/Greece/39/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T A2590G C3037T C14408T C18264T A23403G GGG28881AAC TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_434946
 2020-03-29 2020-05-01
 United States hCoV-19/USA/TX-HMH352/2020
 C241T C1059T G1980A C3037T C14408T G16979T A23403G C25350T G25563T C27964T C29741T

EPI_ISL_434947
 2020-03-29 2020-05-01
 United States hCoV-19/USA/TX-HMH353/2020
 C241T C3037T A6616G G14118T C14408T G15243T A23403G

EPI_ISL_434948
 2020-03-29 2020-05-01
 United States hCoV-19/USA/TX-HMH354/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T

EPI_ISL_434949
 2020-03-29 2020-05-01
 United States hCoV-19/USA/TX-HMH355/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_434950
 2020-03-29 2020-05-01
 United States hCoV-19/USA/TX-HMH357/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_434951
 2020-03-29 2020-05-01
 United States hCoV-19/USA/TX-HMH358/2020
 C241T C3037T A10840G C13138T C14408T G15243T A23403G

EPI_ISL_434952
 2020-03-29 2020-05-01
 United States hCoV-19/USA/TX-HMH359/2020
 C66T C6312A G11083T C13730T C23277T C23929T C28311T

EPI_ISL_434953
 2020-03-29 2020-05-01
 United States hCoV-19/USA/TX-HMH360/2020
 T490A C3177T C6040T C8782T C8950T G12478A T18736C C24034T T26729C G28077C T28144C C28896G G29162T C29451T A29700G

EPI_ISL_434954
 2020-03-29 2020-05-01
 United States hCoV-19/USA/TX-HMH361/2020
 C241T C3037T C14408T C15960T A23403G GGG28881AAC

EPI_ISL_434959
 2020-03-29 2020-05-01
 United States hCoV-19/USA/TX-HMH367/2020
 C241T C3037T A6616G G14118T C14408T G15243T A23403G

EPI_ISL_434974
 2020-03-29 2020-05-01
 United States hCoV-19/USA/TX-HMH387/2020
 T490A C3177T C6040T C8782T C8950T G12478A T18736C C24034T T26729C G28077C T28144C C28896G C29451T A29700G

EPI_ISL_435085
 2020-03-29 2020-05-02
 India hCoV-19/India/NCDC-02310/2020
 T76W T78K C1281Y G3243K C6312A T8022K C8543S G11083T C13730T C13862Y C28311T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_435086
 2020-03-29 2020-05-02
 India hCoV-19/India/NCDC-02315/2020
 T2785Y C6312A T8022K A8026W G11083T G12929R C13730T C28115T C28311T GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_435093
 2020-03-29 2020-05-02
 India hCoV-19/India/NCDC-02312/2020
 A6081R C6310M C6312A G11083T C11779Y G12685K C13730T A18911M C23929T AG24389MS C28311T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_435094
 2020-03-29 2020-05-02
 India hCoV-19/India/NCDC-02327/2020
 C6310M C6312A C11669Y C13730T C19524Y C23929T AG24389MS C28311T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_435095
 2020-03-29 2020-05-02
 India hCoV-19/India/NCDC-02328/2020
 C6312A T8022K G11083T C13730T C13862T C23929T C28311T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_435096
 2020-03-29 2020-05-02
 India hCoV-19/India/NCDC-02332/2020
 C6312A G11083T C13730T C23929T AG24389MS C28311T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_435099
 2020-03-29 2020-05-02
 India hCoV-19/India/NCDC-02320/2020
 C6312A C9039M G11083T C13730T C23929T C28311T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_435100
 2020-03-29 2020-05-02
 India hCoV-19/India/NCDC-02321/2020
 T78K C6312A T8022K G11083T C13730T T18573C C23929T C28311T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_435430
 2020-03-29 2020-05-04
 Hungary hCoV-19/Hungary/SRC-03670w/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_436042
 2020-03-29 2020-05-05
 United States hCoV-19/USA/DC-CDC-1734/2020
 C241T C1059T C3037T C14408T A23403G C24034T G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_436341
 2020-03-29 2020-05-06
 Spain hCoV-19/Spain/Valencia246/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C8782T A12986G C26088T T28144C TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_436969
 2020-03-29 2020-05-08
 Denmark hCoV-19/Denmark/ALAB-SSI-559/2020
 C241T C1059T C1302T C3037T C12049T C14408T A23403G G25563T

EPI_ISL_437025
 2020-03-29 2020-05-08
 Denmark hCoV-19/Denmark/ALAB-SSI-654/2020
 C241T C1059T C3037T C14408T T21976C A23403G G25563T

EPI_ISL_437027
 2020-03-29 2020-05-08
 Denmark hCoV-19/Denmark/ALAB-SSI-660/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_437029
 2020-03-29 2020-05-08
 Denmark hCoV-19/Denmark/ALAB-SSI-662/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_437224
 2020-03-29 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0025/2020
 C241T C3037T C8986T C14408T C17104T A20268G A23403G G29734C

EPI_ISL_437270
 2020-03-29 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0075/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_437361
 2020-03-29 2020-05-08
 United States hCoV-19/USA/MN-MDH-284/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C8782T A17858G C18060T A24694T T28144C G28812T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_437362
 2020-03-29 2020-05-08
 United States hCoV-19/USA/MN-MDH-286/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C8782T C17747T A17858G C18060T A24694T T28144C G28812T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_437469
 2020-03-29 2020-05-09
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Madinah25/2020
 ATTAAAGGTTTATA1- C241T C3037T C14408T C18877T A23403G G25563T C26735T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_437470
 2020-03-29 2020-05-09
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Madinah34/2020
 ATTAAAGGTTTAT1- C241T C3037T C14408T C18877T A23403G G25563T C26735T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_437471
 2020-03-29 2020-05-09
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Madinah38/2020
 ATTAAAGGTTTAT1- C241T C3037T C6040T C14408T C18877T A23403G G25563T C26735T C27503T

EPI_ISL_437472
 2020-03-29 2020-05-09
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Madinah41/2020
 ATTAAAGGTTTATACCT1- C241T C3037T C14408T C26735T A29884C A29889C A29891G A29898T AA29902-

EPI_ISL_437473
 2020-03-29 2020-05-09
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Madinah44/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C3037T C14408T C18877T C20806T A23403G G25563T C26735T

EPI_ISL_437474
 2020-03-29 2020-05-09
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Madinah45/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATC1- C241T C3037T T7292C C14408T C18877T A23403G G25563T C26735T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_437482
 2020-03-29 2020-05-10
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Madinah23/2020
 C241T C3037T C14408T C18877T G22592T A23403G G25563T C26735T

EPI_ISL_437483
 2020-03-29 2020-05-10
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Madinah24/2020
 C241T C3037T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_437484
 2020-03-29 2020-05-10
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Madinah27/2020
 C8782T G22468T T28144C G28878A G29742A

EPI_ISL_437485
 2020-03-29 2020-05-10
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Madinah30/2020
 C241T C3037T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_437486
 2020-03-29 2020-05-10
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Madinah31/2020
 C241T C3037T C14408T C18877T A23403G G25563T C26735T G29742A

EPI_ISL_437487
 2020-03-29 2020-05-10
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Madinah47/2020
 C241T C3037T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_437488
 2020-03-29 2020-05-10
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Madinah48/2020
 C241T C3037T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_437489
 2020-03-29 2020-05-10
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Madinah49/2020
 C84T C241T C3037T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_437490
 2020-03-29 2020-05-10
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Madinah50/2020
 C84T C241T C3037T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_437491
 2020-03-29 2020-05-10
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Madinah51/2020
 C3037T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_437492
 2020-03-29 2020-05-10
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Madinah53/2020
 C241T AAGTCATTT686- C3037T T7292C C14408T C18877T A23403G G25563T C26735T

EPI_ISL_437493
 2020-03-29 2020-05-10
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Madinah54/2020
 C241T C3037T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_437494
 2020-03-29 2020-05-10
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Madinah55/2020
 C241T C3037T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_437495
 2020-03-29 2020-05-10
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Madinah57/2020
 C8782T A14109G G14122T C18877T G25563T T28144C G29742A

EPI_ISL_437803 MT461603
 2020-03-29 2020-05-11
 United States SARS-CoV-2/human/USA/UNKNOWN-UW-3982/2020
 ATTAAAG1- TA11GT TC18GG C28T C241T C1059T C3037T C14408T G17808T A23403G G25563T G29553A -29904AAAAAAAAAAAAAAAA

EPI_ISL_437804 MT461604
 2020-03-29 2020-05-11
 United States SARS-CoV-2/human/USA/WA-UW-4009/2020
 ATTAAAG1- TA11GT TCCC18GGGA C8782T C17747T A17858G C18060T T28144C -29904AAAAAAAAAAAAAA

EPI_ISL_437807 MT461607
 2020-03-29 2020-05-11
 United States SARS-CoV-2/human/USA/WA-UW-4021/2020
 A1C TA3GG TA11GT TCC18GGG C241T C1059T C3037T C14408T G16912T A23403G C23551T G25563T G29553A -29904AAAAAAAAAAAAAAAAAA

EPI_ISL_437808 MT461608
 2020-03-29 2020-05-11
 United States SARS-CoV-2/human/USA/WA-UW-4024/2020
 ATTAAAGG1- TA11GT C19V C241T C1059T C3037T C14408T A23403G G25563T G29553A

EPI_ISL_437809 MT461609
 2020-03-29 2020-05-11
 United States SARS-CoV-2/human/USA/WA-UW-4026/2020
 A1C TAA3GGH TA11GT TC18GG C28T C8782T C9166T A14882G C17747T A17858G C18060T T28144C -29904AAAAAAAAAAAAAAAAAA

EPI_ISL_437810 MT461610
 2020-03-29 2020-05-11
 United States SARS-CoV-2/human/USA/WA-UW-4032/2020
 AT1- TA3GG T10A C8782T C17747T A17858G C18060T T28144C G28514T

EPI_ISL_437811 MT461611
 2020-03-29 2020-05-11
 United States SARS-CoV-2/human/USA/WA-UW-4041/2020
 ATTA1-GGG TA11GT T18G C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_437893 MT459896
 2020-03-29 2020-05-11
 Greece SARS-CoV-2/human/GRC/33_36910/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T G20125A G20128A A22739C A23403G C27263T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_438311
 2020-03-29 2020-05-12
 United Kingdom hCoV-19/England/CAMB-75ABD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6627T C14408T A23403G GGG28881AAC ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_438319
 2020-03-29 2020-05-12
 United Kingdom hCoV-19/England/CAMB-75AF9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16049Y A23403G T25202K G27948T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_438355
 2020-03-29 2020-05-12
 United Kingdom hCoV-19/England/CAMB-75D1E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A17691R A23403G T25202K G27441K GGG28881AAC T29568C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_438749
 2020-03-29 2020-05-12
 United Kingdom hCoV-19/Scotland/CVR1003/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G G24197T G25563T C26735T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_438762
 2020-03-29 2020-05-12
 United Kingdom hCoV-19/Scotland/CVR1076/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C19170T G19509A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_438763
 2020-03-29 2020-05-12
 United Kingdom hCoV-19/Scotland/CVR1079/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C12710T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_439575
 2020-03-29 2020-05-12
 United Kingdom hCoV-19/England/CAMB-7234C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6606T C14408T A20268G A23403G C28854T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_439602
 2020-03-29 2020-05-12
 United Kingdom hCoV-19/England/CAMB-71E4C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_439923
 2020-03-29 2020-05-12
 United Kingdom hCoV-19/England/CAMB-71EF1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1514T ATG1605- C20270T T25202K A29683T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_443278
 2020-03-29 2020-05-12
 France hCoV-19/France/B5415/2020
 C241T C3037T C10377T C14408T A23403G C27923T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_444643
 2020-03-29 2020-05-14
 United States hCoV-19/USA/NY-NYUMC526/2020
 C241T C1059T T1906C A2018G C3037T C7279T C12084T C14408T T21995C A23403G G25563T

EPI_ISL_444644
 2020-03-29 2020-05-14
 United States hCoV-19/USA/NY-NYUMC527/2020
 C241T C1059T C3037T C12809T C14408T A23403G G25563T

EPI_ISL_444645
 2020-03-29 2020-05-14
 United States hCoV-19/USA/NY-NYUMC528/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_444646
 2020-03-29 2020-05-14
 United States hCoV-19/USA/NY-NYUMC529/2020
 C241T C1059T C3037T C6941T C11916T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_444647
 2020-03-29 2020-05-14
 United States hCoV-19/USA/NY-NYUMC530/2020
 C241T C3037T C4206T G10265A C14408T C21058A A23403G GGG28881AAC

EPI_ISL_444648
 2020-03-29 2020-05-14
 United States hCoV-19/USA/NY-NYUMC531/2020
 C241T C1059T C3037T C11916T C14408T C14925T C18998T A23403G G25563T G29540A

EPI_ISL_444651
 2020-03-29 2020-05-14
 United States hCoV-19/USA/NY-NYUMC534/2020
 C241T C1059T C3037T C11916T C14408T A23403G G25563T

EPI_ISL_444933
 2020-03-29 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-840/2020
 C241T C1059T C1302T C3037T G5036A C14408T C14585T A23403G G25563T

EPI_ISL_444941
 2020-03-29 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-852/2020
 C241T C1059T C3037T C12781T C14408T C15842A G22103C A23403G G25563T

EPI_ISL_444942
 2020-03-29 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-854/2020
 C241T C1059T C3037T T8788C C14408T C18646T A23403G G25563T G26951A

EPI_ISL_444944
 2020-03-29 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-856/2020
 C241T C3037T C5724T C7834T C14408T A23403G

EPI_ISL_444946
 2020-03-29 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-861/2020
 ATG1605- G11083T C20402T C28253A C29284T

EPI_ISL_444947
 2020-03-29 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-862/2020
 C241T C1059T C1302T C3037T C14408T A23403G G25563T

EPI_ISL_444990
 2020-03-29 2020-05-14
 Spain hCoV-19/Spain/Barcelona_VH1713/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- C8782T T9477A C14805T A21694G G25979T T28144C C28657T C28863T

EPI_ISL_445334
 2020-03-29 2020-05-15
 Chile hCoV-19/Chile/Puerto_Montt_2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T1723Y C3037T G10427R C14408T C21114T A23403G C25350T G28703T A29319R CA29838TG GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_445335
 2020-03-29 2020-05-15
 Chile hCoV-19/Chile/Puerto_Montt_3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G45T C241T C3037T A3956M C8389T C14408T T20391Y A23403G G25563T G29737K ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_447282
 2020-03-29 2020-05-17
 Israel hCoV-19/Israel/701002786/2020
 C241T C1059T G2945A C3037T C14408T G21123T A23403G G25563T AAAAAAAAAAAA29892-

EPI_ISL_447388
 2020-03-29 2020-05-17
 Israel hCoV-19/Israel/2047604/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAA29892-

EPI_ISL_447389
 2020-03-29 2020-05-17
 Israel hCoV-19/Israel/2047586/2020
 C241T C884T C1059T C3037T T13006C C14408T G20962A A23403G G25563T C25688T AAAAAAAAAAAA29892-

EPI_ISL_447391
 2020-03-29 2020-05-17
 Israel hCoV-19/Israel/2047418/2020
 T191C C241T C313T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_447449
 2020-03-29 2020-05-17
 Israel hCoV-19/Israel/13075719/2020
 C241T C3037T C14408T A23403G G25563T AAAAAAAAAAAA29892-

EPI_ISL_447450
 2020-03-29 2020-05-17
 Israel hCoV-19/Israel/13075703/2020
 C241T C313T C3037T G4510A C14408T A23403G G25785T A28877T GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_447477
 2020-03-29 2020-05-17
 Spain hCoV-19/Spain/Valencia/COV000526/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C5884T C14408T T17126C A20268G A23403G C24466T C28546A AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_447478
 2020-03-29 2020-05-17
 Spain hCoV-19/Spain/Valencia/COV000529/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A20268G G21578A A23403G G29734C AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_447481
 2020-03-29 2020-05-17
 Spain hCoV-19/Spain/Valencia/COV000536/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C8782T A12986G G15100A G25252T C26088T T28144C AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_447592
 2020-03-29 2020-05-18
 Taiwan hCoV-19/Taiwan/TSGH-33/2020
 T2190A G3122T G4436T C8782T T16553A A17271C C17747T A17858G C18060T T27482C -29904GAATACCCAAATAAAAGCCACTGAAACCGGAAAAACAAAAAATTTAAAAAATATAAAGGAAAAAC

EPI_ISL_447748
 2020-03-29 2020-05-18
 Colombia hCoV-19/Colombia/GUR-0609/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCT1- C241T C3037T C7047T C14408T A23403G A25505C GGG28881AAC AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_448864
 2020-03-29 2020-05-19
 United Kingdom hCoV-19/England/SHEF-C7B31/2020
 C241T G1914A C3037T C14408T T16456C A23403G

EPI_ISL_448866
 2020-03-29 2020-05-19
 United Kingdom hCoV-19/England/SHEF-C8286/2020
 C241T G1914A C3037T C14408T T16456C A23403G

EPI_ISL_448951
 2020-03-29 2020-05-19
 United Kingdom hCoV-19/Northern Ireland/NIRE-FB220/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C313T C3037T C4795T C14408T C15251Y C17746Y A23403G G26660A GGG28881AAC

EPI_ISL_450349
 2020-03-29 2020-05-20
 Norway hCoV-19/Norway/Trondheim-S12/2020
 ATTAAAGGTTTATACCTTCC1- C241T C1415T T1918C C3037T G13921T C14408T C18877T A23403G G25563T AAAAAAAAAAAAAAA29889-

EPI_ISL_450393
 2020-03-29 2020-05-21
 United States hCoV-19/USA/NY-NYUMC676/2020
 C241T C1059T C3037T C4113T G11634T C11916T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_450445 MT499171
 2020-03-29 2020-05-21
 United States SARS-CoV-2/human/USA/CA-CZB-1196/2020
 ATTA1- C241T C2113T C3037T C7765T C14408T C17690T C18877T A23403G G25563T

EPI_ISL_450526
 2020-03-29 2020-05-21
 Poland hCoV-19/Poland/1109500/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C3037T C21707T CCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29801-

EPI_ISL_450527
 2020-03-29 2020-05-21
 Poland hCoV-19/Poland/1110551/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C7644T C14408T C14931T A23403G G25563T T25938C CCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29801-

EPI_ISL_450728
 2020-03-29 2020-05-22
 Belgium hCoV-19/Belgium/ITM_C161/2020
 C241T C3037T A6507G C14408T A23403G

EPI_ISL_450729
 2020-03-29 2020-05-22
 Belgium hCoV-19/Belgium/ITM_C169/2020
 C241T C3037T C12439A C14408T C15603T A20268G A23403G C28512T

EPI_ISL_450748
 2020-03-29 2020-05-22
 United States hCoV-19/USA/MN-MDH-274/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C8782T C12253T C17747T A17858G C18060T A24694T T28144C G28812T G28985T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_450749
 2020-03-29 2020-05-22
 United States hCoV-19/USA/MN-MDH-275/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C37A C241T C1059T C3037T C14408T A23403G G25563T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_450750
 2020-03-29 2020-05-22
 United States hCoV-19/USA/MN-MDH-276/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C3037T C14408T A23403G G25563T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_450751
 2020-03-29 2020-05-22
 United States hCoV-19/USA/MN-MDH-277/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C3037T C14408T C21707T A23403G A26530G CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_450752
 2020-03-29 2020-05-22
 United States hCoV-19/USA/MN-MDH-278/2020
 ATT1- C8782T C17747T A17858G C18060T A24694T T28144C G28812T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_451103
 2020-03-29 2020-05-23
 Australia hCoV-19/Australia/SAP065/2020
 C241T C2416T C3037T C14408T A23403G G25563T

EPI_ISL_451104
 2020-03-29 2020-05-23
 Australia hCoV-19/Australia/SAP066/2020
 C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T

EPI_ISL_451105
 2020-03-29 2020-05-23
 Australia hCoV-19/Australia/SAP067/2020
 C241T C2416T C3037T C14408T A23403G G25563T C28887T

EPI_ISL_451982 MT511077
 2020-03-29 2020-05-26
 Poland SARS-CoV-2/human/POL/PL_P21/2020
 T10W T13W C19T C106T C241T C3037T A8072G C14408T A23403G GGG28881AAC C29870M

EPI_ISL_451984 MT511079
 2020-03-29 2020-05-26
 Poland SARS-CoV-2/human/POL/PL_P23/2020
 C19T C106T C241T C3037T A8072G C14408T A23403G C28005T GGG28881AAC C29870M

EPI_ISL_452586
 2020-03-29 2020-05-27
 Spain hCoV-19/Spain/COV001104/2020
 C241T C3037T C14408T A20268G A23403G C27059T G29734C

EPI_ISL_453906
 2020-03-29 2020-05-28
 Portugal hCoV-19/Portugal/PT0190/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATC1- C241T C3037T C3140T G3719A G10870T C14408T A23403G G24077T T28705C C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_453911
 2020-03-29 2020-05-28
 Portugal hCoV-19/Portugal/PT0195/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- C241T C955T C958T C3037T C3140T C14408T C17733T A23403G G24077T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_453912
 2020-03-29 2020-05-28
 Portugal hCoV-19/Portugal/PT0196/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- C241T C955T C958T C3037T C3140T C14408T C17733T A23403G G24077T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_453913
 2020-03-29 2020-05-28
 Portugal hCoV-19/Portugal/PT0197/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- C241T C955T C958T C3037T C3140T C14408T C17733T A23403G G24077T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_453916
 2020-03-29 2020-05-28
 Portugal hCoV-19/Portugal/PT0200/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- C241T C3037T C14408T A23403G GGG28881AAC AGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29799-

EPI_ISL_454206
 2020-03-29 2020-05-28
 Portugal hCoV-19/Portugal/PT0482/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- C241T C3037T C14408T A23403G G24077T CGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29754-

EPI_ISL_454297
 2020-03-29 2020-05-28
 Portugal hCoV-19/Portugal/PT0574/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C6539T C14408T A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454349
 2020-03-29 2020-05-28
 Portugal hCoV-19/Portugal/PT0626/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3045T C3140T C14408T A23403G G24077T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454366
 2020-03-29 2020-05-28
 United States hCoV-19/USA/PA-MGEL81/2020
 C8782T C9298T G16206T C17747T A17858G C18060T A24694T T28144C GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_455389
 2020-03-29 2020-05-29
 China hCoV-19/Wuhan/HB-WH4-207/2020
 C15714-

EPI_ISL_455412
 2020-03-29 2020-05-29
 Nigeria hCoV-19/Nigeria/OG007-CV22/2020
 ATTAAAGGTTTATACC1- A2480G C2558T G11083T C14805T G26144T G26779T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_455422
 2020-03-29 2020-05-29
 Nigeria hCoV-19/Nigeria/OS070-CV11/2020
 ATTAAAGGTTTATACC1- A2550G C8782T T9880C C15857T C20081T G22468T T28144C G28878A G29705T G29742A AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_455423
 2020-03-29 2020-05-29
 Nigeria hCoV-19/Nigeria/OS075-CV12/2020
 ATTAAAGGTTTATACCTTCCCA1- A2550G C8782T T9880C C15857T C20081T G22468T T28144C G28878A G29705T G29742A AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_455424
 2020-03-29 2020-05-29
 Nigeria hCoV-19/Nigeria/OS085-CV14/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- G3371T C8782T T11398C G22468T T28144C G28878A G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_455426
 2020-03-29 2020-05-29
 Nigeria hCoV-19/Nigeria/OS122-CV18/2020
 ATTAAA1- A2550G C8782T T9880C C15857T C20081T G22468T T28144C G28878A G29705T G29742A AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_455567
 2020-03-29 2020-05-31
 Croatia hCoV-19/Croatia/7R-S8new/2020
 C241T C1059T C3037T C14408T T21009C A23403G G25563T AAAAAAAAAAAAAAAAAAA29885-

EPI_ISL_455626
 2020-03-29 2020-06-01
 Portugal hCoV-19/Portugal/PT0202/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- C1190T G11083T C17410T C18687T ACTT25432- C29200T C29274T C29754T G29764A TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_455985
 2020-03-29 2020-06-01
 United States hCoV-19/USA/LA-EVTL142/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_456278
 2020-03-29 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1837/2020
 C241T C1059T C3037T C14408T C16260T A23403G A29700G

EPI_ISL_456282
 2020-03-29 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1845/2020
 C241T C1059T C3037T C14408T C16247T C16260T A23403G C28821A

EPI_ISL_456966
 2020-03-29 2020-06-02
 United Kingdom hCoV-19/Scotland/EDB5091/2020
 C241T C3037T C14408T T15966C A20268G A23403G G29260T G29734C

EPI_ISL_457010
 2020-03-29 2020-06-02
 United Kingdom hCoV-19/Scotland/EDB5370/2020
 C241T C3037T C14408T C18877T A23403G G24197T G24348T G25563T C26735T

EPI_ISL_457156
 2020-03-29 2020-06-02
 United Kingdom hCoV-19/England/EXET-135CEF/2020
 C241T C3037T C14408T G14580T A23403G

EPI_ISL_457162
 2020-03-29 2020-06-02
 United Kingdom hCoV-19/England/EXET-135D55/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_457167
 2020-03-29 2020-06-02
 United Kingdom hCoV-19/England/EXET-135DCE/2020
 C241T C3037T C5005T C14408T A23403G GGG28881AAC

EPI_ISL_457783 MT646112
 2020-03-29 2020-06-02
 United States SARS-CoV-2/human/USA/MD-HP00154/2020
 T490A C3177T C6040T C8782T G12478A T18736C C24034T T26729C G28077C T28144C C28896G T28921C A29700G

EPI_ISL_457811 MT646081
 2020-03-29 2020-06-02
 United States SARS-CoV-2/human/USA/MD-HP00118/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_457843
 2020-03-29 2020-06-02
 Kenya hCoV-19/Kenya/NIC_569/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T20394C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_457996
 2020-03-29 2020-06-02
 Oman hCoV-19/Oman/RESP-20-6417/2020
 C241T C2416T C3037T G8371T G11083T C14408T C22477T A23403G G25563T

EPI_ISL_458187
 2020-03-29 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0329217/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T19839C A23403G T25476C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458188
 2020-03-29 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0329218/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T G29291A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458189
 2020-03-29 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0329219/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458190
 2020-03-29 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0329220/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T13216G C14408T C15324T A23403G A28765G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458191
 2020-03-29 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0329221/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4255T C14408T C18486T A23403G A26530G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458192
 2020-03-29 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0329222/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G A28765G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458193
 2020-03-29 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0329223/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1471T C3037T C4320T C14408T A23403G G25563T C25688T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458194
 2020-03-29 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0329224/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4320T C14408T A23403G G25563T C25688T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458195
 2020-03-29 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0329225/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3692T C14408T C15324T C15960T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458196
 2020-03-29 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0329226/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1142T C3037T C11074T C14408T C15324T A23403G C27434T A28765G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458197
 2020-03-29 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0329227/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4217G C14408T C15324T A23403G A28765G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458198
 2020-03-29 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0329228/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T C18928T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458199
 2020-03-29 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0329229/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G A28765G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458200
 2020-03-29 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0329230/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G C27294T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458201
 2020-03-29 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0329231/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T C14408T C15324T A23403G G25082A C25703T C29642T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458202
 2020-03-29 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0329232/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458203
 2020-03-29 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0329233/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C106T C241T C3037T A11839G C14408T T19839C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458204
 2020-03-29 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0329234/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G10098A G11083T C11580T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458205
 2020-03-29 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0329235/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T G16496A A23403G C27434T A28765G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458206
 2020-03-29 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0329236/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458207
 2020-03-29 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0329237/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458208
 2020-03-29 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0329238/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5239T C14408T A23403G G25855T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458209
 2020-03-29 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0329239/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G T23633C C28139A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458210
 2020-03-29 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0329240/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T12112C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458211
 2020-03-29 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0329241/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T19839C G21724T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458212
 2020-03-29 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0329242/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C14408T G17562T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458213
 2020-03-29 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0329243/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G3728T C9891T G12149T C14408T A23403G G25563T G28985T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458214
 2020-03-29 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0329244/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4320T C14408T C21590T A23403G G25563T C25688T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458215
 2020-03-29 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0329245/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11417T A12605G C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458216
 2020-03-29 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0329246/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C14980T G18703T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458667
 2020-03-29 2020-06-04
 United Kingdom hCoV-19/England/NORT-28945C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C2091T G7393T A10323G G11083T C14805T T17247C C25836T G26144T C28377T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458674
 2020-03-29 2020-06-04
 United Kingdom hCoV-19/England/NORT-28936E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A T13216G C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_459885
 2020-03-29 2020-06-04
 Canada hCoV-19/Canada/ON_QGLO-034/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25217T G25563T G29688T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_459890
 2020-03-29 2020-06-04
 Canada hCoV-19/Canada/ON_QGLO-039/2020
 ATTAAAGGTTTATACCTTCC1- GT24TA C241T C2416T C3037T C14408T A23403G G25563T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_460269 MT520344
 2020-03-29 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00093/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C2416T C3037T A6818G C14408T A23403G G25563T G27074A AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460604
 2020-03-29 2020-06-05
 Russia hCoV-19/Russia/CRIE145922/2020
 ATTAAAGGTTTAT1- C241T C3037T C14408T A21141G A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_460605
 2020-03-29 2020-06-05
 Russia hCoV-19/Russia/CRIE140762/2020
 ATTAAAGGTTTA1- C241T C1059T C3037T T4408C C8668T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_460664
 2020-03-29 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_491/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1537C C3037T T13006C C13384T C14408T A23403G G25563T C25688T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460687
 2020-03-29 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_514/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4586T G12550A C14408T A20268G C20740A A23403G C28253T G29734C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460694
 2020-03-29 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_521/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1997T C3037T C14408T C22050T A23403G G29422T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461065
 2020-03-29 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_630/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C26408T C27804T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461068
 2020-03-29 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_633/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T1570C G11083T C14805T T17247C G26144T C29459T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461127
 2020-03-29 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_692/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461268
 2020-03-29 2020-06-06
 Netherlands hCoV-19/Netherlands/Zeeland_3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C11109T C14408T C19983T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461432
 2020-03-29 2020-06-06
 United States hCoV-19/USA/WA-UW-4779/2020
 ATTAAAGGTTTAT1- A14T CCCAGGTAACAAACCAA19- CC36TA C241T C1059T C3037T C14408T A23403G G25354T G25563T GG29861AA G29864A TG29867AA C29870A

EPI_ISL_462206
 2020-03-29 2020-06-08
 Belgium hCoV-19/Belgium/VEH-0329352/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T23287C A23403G A23870G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462211
 2020-03-29 2020-06-08
 Belgium hCoV-19/Belgium/VHEJ-0329357/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T19839C C21646T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462240
 2020-03-29 2020-06-08
 Belgium hCoV-19/Belgium/RMO-0329386/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T19839C A23403G C24099T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462243
 2020-03-29 2020-06-08
 Belgium hCoV-19/Belgium/LHL-0329389/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15024T T19839C A23403G G24199T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462246
 2020-03-29 2020-06-08
 Belgium hCoV-19/Belgium/HAJ-0328392/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9724T C11674T A13947T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462473
 2020-03-29 2020-06-08
 Bosnia and Herzegovina hCoV-19/Bosnia and Herzegovina/ChVir7372/2020
 ATTAAAGGTTTATA1- C241T C3037T C14408T C15324T A23403G C29769T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_462474
 2020-03-29 2020-06-08
 Bosnia and Herzegovina hCoV-19/Bosnia and Herzegovina/ChVir7375/2020
 ATTAAAGGTTTAT1- C241T C3037T A8107T C14408T C15324T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_462476
 2020-03-29 2020-06-08
 Bosnia and Herzegovina hCoV-19/Bosnia and Herzegovina/ChVir7379/2020
 ATTAAA1- C241T C1059T C3037T T4690C C14408T C20178T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_463980
 2020-03-29 2020-06-11
 Canada hCoV-19/Canada/ON_MU-S312/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C3037T G4201T C14408T A23403G C26527T G29734A AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_463981
 2020-03-29 2020-06-11
 Canada hCoV-19/Canada/ON_MU-S328/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C3037T C14408T A23403G C25509S G25563T C29769T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_463982
 2020-03-29 2020-06-11
 Canada hCoV-19/Canada/ON_MU-S349/2020
 ATTAAA1- C241T C1059T C3037T C14408T C19386T A23403G G25563T G28368A GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_463983
 2020-03-29 2020-06-11
 Canada hCoV-19/Canada/ON_MU-S350/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T AAGTCATTT686- C1059T C3037T C8092T C14408T TTTGTATGTAAATAAACATGCATTCCACACACCAGCTTTTGATAAAA19293- A23403G G25563T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_464141
 2020-03-29 2020-06-11
 South Africa hCoV-19/SouthAfrica/Tygerberg_30/2020
 C241T C4002T T8022G G10097A C13536T C14408T A23403G C23731T AG24389CC C25169T GGG28881AAC

EPI_ISL_464142
 2020-03-29 2020-06-11
 South Africa hCoV-19/SouthAfrica/Tygerberg_31/2020
 A1515G C9223T G11083T C14805T T17247C C18568T T20891G T25569A G26144T

EPI_ISL_465859
 2020-03-29 2020-06-11
 United Kingdom hCoV-19/England/20139069604/2020
 C241T C3037T C14408T G21578T A23403G GGG28881AAC

EPI_ISL_465860
 2020-03-29 2020-06-11
 United Kingdom hCoV-19/England/20139069704/2020
 A2480G C2558T G11083T A11090T C14805T C17430T G26144T C26735T

EPI_ISL_465861
 2020-03-29 2020-06-11
 United Kingdom hCoV-19/England/20139069804/2020
 A2480G C2558T A11090T C14805T C17430T G26144T C26735T

EPI_ISL_465865
 2020-03-29 2020-06-11
 United Kingdom hCoV-19/England/20140001504/2020
 A2480G C2558T C14220T C14805T C22264T G26144T

EPI_ISL_465866
 2020-03-29 2020-06-11
 United Kingdom hCoV-19/England/20140002104/2020
 G1440A G2891A C4668T G25523A C26681T A27545G C28708T

EPI_ISL_465874
 2020-03-29 2020-06-11
 United Kingdom hCoV-19/England/20140006304/2020
 C241T C2416T C3037T C14408T C14786T G20578T C21587Y A23403G G25563T

EPI_ISL_465875
 2020-03-29 2020-06-11
 United Kingdom hCoV-19/England/20140006904/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_465876
 2020-03-29 2020-06-11
 United Kingdom hCoV-19/England/20140007502/2020
 A2480G C2558T T7813Y A10828C G11083T T11488Y C14805T C25096T G26144T

EPI_ISL_465879
 2020-03-29 2020-06-11
 United Kingdom hCoV-19/England/20140009904/2020
 A8728G C9636Y G11083T G13627T C14805T C15540T G26144T A28338G C29721T

EPI_ISL_465883
 2020-03-29 2020-06-11
 United Kingdom hCoV-19/England/20140063804/2020
 C241T G2468S C3037T C14408T G15768T A23403G GGG28881AAC

EPI_ISL_465890
 2020-03-29 2020-06-11
 United Kingdom hCoV-19/England/20140073104/2020
 C241T C3037T C11653T C14408T A23403G GGG28881AAC A29871G

EPI_ISL_465914
 2020-03-29 2020-06-11
 United Kingdom hCoV-19/England/20142010304/2020
 C241T C2675A C3037T C14408T A23403G GGG28881AAC

EPI_ISL_465920
 2020-03-29 2020-06-11
 United Kingdom hCoV-19/England/20142014704/2020
 C241T C3037T C14408T C18395T A23403G GGG28881AAC

EPI_ISL_465932
 2020-03-29 2020-06-11
 United Kingdom hCoV-19/England/20142022204/2020
 G11083T C14805T T17247C G18498K G26144T G28899K A29871T

EPI_ISL_465935
 2020-03-29 2020-06-11
 United Kingdom hCoV-19/England/20142024504/2020
 C241T C3037T C14408T A23403G G25429T A29880T

EPI_ISL_465937
 2020-03-29 2020-06-11
 United Kingdom hCoV-19/England/20142025404/2020
 C241T C1780Y C3037T A3058W C3369T C4158T T8421K C14408T A23403G C25308Y GGG28881AAC A29873G

EPI_ISL_465939
 2020-03-29 2020-06-11
 United Kingdom hCoV-19/England/20142026704/2020
 C241T C3037T C14408T A23403G C24381Y GGG28881AAC G29734T

EPI_ISL_465987
 2020-03-29 2020-06-11
 United Kingdom hCoV-19/England/20144021704/2020
 C241T G246T C3037T C5173T C14408T G17193K A23403G C23996Y GGG28881AAC

EPI_ISL_465991
 2020-03-29 2020-06-11
 United Kingdom hCoV-19/England/20144022204/2020
 C241T C3037T T7792C C14408T G21724T A23403G C23643Y GGG28881AAC

EPI_ISL_467775
 2020-03-29 2020-06-15
 Russia hCoV-19/Russia/CRIE139642/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T C14408T A23403G GGG28881AAC GAGA29779- C29787T ATATGGAAGAGC29790- C29803T TGTGTAAAATTAATTTTAGTAGTGCTATC29807- C29837A G29841C TTTTAATA29845C T29856G TT29858CG G29861C AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_468013
 2020-03-29 2020-06-16
 Australia hCoV-19/Australia/SAP204/2020
 A1- C241T GTT521- C3037T C14408T A23403G GGG28881AAC

EPI_ISL_468496 MT628220
 2020-03-29 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1559/2020
 C241T C1059T C3037T C6187Y C14408T T22939C A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_468527 MT628250
 2020-03-29 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1598/2020
 T2Y C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_468781
 2020-03-29 2020-06-17
 Spain hCoV-19/Spain/Zaragoza2461/2020
 C241T C3037T A8031G C14408T A20268G A23403G G28188T C29640T

EPI_ISL_471181
 2020-03-29 2020-06-19
 United States hCoV-19/USA/WI-WSLH-200015/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T T14859A A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471264
 2020-03-29 2020-06-19
 United States hCoV-19/USA/WI-WSLH-200100/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C20405T G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471554
 2020-03-29 2020-06-22
 Brazil hCoV-19/Brazil/SP-551/2020
 T25A C241T C3037T C14408T A23403G T27299C GGG28881AAC T29148C AAAAAAAAAAAAA29891-

EPI_ISL_471964
 2020-03-29 2020-06-23
 United Kingdom hCoV-19/England/EXET-137342/2020
 C1288T C6312A G11083T C13730T C23929T C28311T

EPI_ISL_472228
 2020-03-29 2020-06-23
 United Kingdom hCoV-19/England/NORT-282D0D/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_475109
 2020-03-29 2020-06-23
 Sweden hCoV-19/Sweden/20-08561/2020
 C241T C1722T C2416T C3037T G8371T C14408T A23403G G25563T

EPI_ISL_475110
 2020-03-29 2020-06-23
 Sweden hCoV-19/Sweden/20-50505/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T

EPI_ISL_475556
 2020-03-29 2020-06-23
 Sweden hCoV-19/Sweden/20-08639/2020
 C241T C3037T A13766G C14408T TACATG21765- A23403G

EPI_ISL_475778
 2020-03-29 2020-06-25
 Austria hCoV-19/Austria/CeMM0303/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A10323R G10870T C14408T C18452T A23403G A24862G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475779
 2020-03-29 2020-06-25
 Austria hCoV-19/Austria/CeMM0304/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7113T C14408T C18877T A23403G G24197T G25563T C26735T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475780
 2020-03-29 2020-06-25
 Austria hCoV-19/Austria/CeMM0305/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C24642T C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475926
 2020-03-29 2020-06-25
 Austria hCoV-19/Austria/CeMM0579/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T658C C3037T C14408T A18010G A23403G A24862G G25906T C28629T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475927
 2020-03-29 2020-06-25
 Austria hCoV-19/Austria/CeMM0580/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T658C C3037T C14408T A18010G A23403G A24862G G25906T C28629T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477621
 2020-03-29 2020-06-29
 Hungary hCoV-19/Hungary/US-2953w/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G G25483A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477624
 2020-03-29 2020-06-29
 Hungary hCoV-19/Hungary/US-539w/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477625
 2020-03-29 2020-06-29
 Hungary hCoV-19/Hungary/US-568w/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16289T C16883T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477674
 2020-03-29 2020-06-29
 United States hCoV-19/USA/CT-UW-2446/2020
 TAAAGGTTTATA3- CCCAGGTAACAAACCAA19- C36T C241T C1059T C3037T C14408T T19378C A23403G G25563T C29666T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_477675
 2020-03-29 2020-06-29
 United States hCoV-19/USA/CT-UW-2447/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C36T C241T C1059T C3037T C3253T C14408T A23403G G25563T TG29867AA C29870A

EPI_ISL_477678
 2020-03-29 2020-06-29
 United States hCoV-19/USA/CT-UW-2473/2020
 ATTAAAGGTTTATACCTTCC1- C36T C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_477684
 2020-03-29 2020-06-29
 United States hCoV-19/USA/UNKNOWN-UW-2476/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C36T C241T C1059T C3037T C14408T A23403G G25563T C29870A

EPI_ISL_477721
 2020-03-29 2020-06-29
 United States hCoV-19/USA/WA-UW-2595/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- C36T G3231T C8782T A10356G C17747T A17858G C18060T T28144C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_477723
 2020-03-29 2020-06-29
 United States hCoV-19/USA/WA-UW-2601/2020
 ATTAAAGGTTTATACCTTCCCAG1- A31T C36T C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_477724
 2020-03-29 2020-06-29
 United States hCoV-19/USA/WA-UW-2603/2020
 ATTAAAGGTTTATACCTTCCCA1- AAC34TTT C241T C1059T C3037T C14408T A23403G G25563T TG29867AA C29870A

EPI_ISL_478616
 2020-03-29 2020-06-30
 United Kingdom hCoV-19/England/NORT-294DEA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G27996T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478619
 2020-03-29 2020-06-30
 United Kingdom hCoV-19/England/NORT-294E14/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G27996T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478621
 2020-03-29 2020-06-30
 United Kingdom hCoV-19/England/NORT-294E32/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T AAGTCATTT686- C3037T A11298G C14408T A20268G A23403G G26849A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478624
 2020-03-29 2020-06-30
 United Kingdom hCoV-19/England/NORT-294FF3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1912T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478626
 2020-03-29 2020-06-30
 United Kingdom hCoV-19/England/NORT-29501D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478627
 2020-03-29 2020-06-30
 United Kingdom hCoV-19/England/NORT-29502C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C2091T G11083T C14805T T17247C C20759T C25701T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478628
 2020-03-29 2020-06-30
 United Kingdom hCoV-19/England/NORT-29503B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T T17247C G26144T G28077T G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478630
 2020-03-29 2020-06-30
 United Kingdom hCoV-19/England/NORT-295068/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3792T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479626
 2020-03-29 2020-07-01
 Canada hCoV-19/Canada/NB-204/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- G25599T ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_479628
 2020-03-29 2020-07-01
 Canada hCoV-19/Canada/NB-209/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A T13216G C14408T A23403G C23731T GGG28881AAC ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_479977
 2020-03-29 2020-07-01
 Japan hCoV-19/Japan/PG-0301/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_479978
 2020-03-29 2020-07-01
 Japan hCoV-19/Japan/PG-0302/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_479995
 2020-03-29 2020-07-01
 Japan hCoV-19/Japan/PG-0320/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T C14599T A23403G G26730A GGG28881AAC TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_480004
 2020-03-29 2020-07-01
 Japan hCoV-19/Japan/PG-0329/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480005
 2020-03-29 2020-07-01
 Japan hCoV-19/Japan/PG-0331/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G C25688T GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480006
 2020-03-29 2020-07-01
 Japan hCoV-19/Japan/PG-0332/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACT1- C241T C313T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480007
 2020-03-29 2020-07-01
 Japan hCoV-19/Japan/PG-0333/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480008
 2020-03-29 2020-07-01
 Japan hCoV-19/Japan/PG-0334/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T C20178T A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_480011
 2020-03-29 2020-07-01
 Japan hCoV-19/Japan/PG-0338/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C313T G377T C3037T C14408T A23403G GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_480012
 2020-03-29 2020-07-01
 Japan hCoV-19/Japan/PG-0339/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G C25688T GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480013
 2020-03-29 2020-07-01
 Japan hCoV-19/Japan/PG-0340/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480041
 2020-03-29 2020-07-01
 Japan hCoV-19/Japan/PG-0371/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T C313T C823T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480066
 2020-03-29 2020-07-01
 Japan hCoV-19/Japan/PG-0397/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C14408T A23403G GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_480088
 2020-03-29 2020-07-01
 Japan hCoV-19/Japan/PG-0420/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- G3179A C6982T C8782T G26713T T28144C C29739T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480089
 2020-03-29 2020-07-01
 Japan hCoV-19/Japan/PG-0421/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- G3179A C6982T C8782T G26713T T28144C C29739T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480119
 2020-03-29 2020-07-01
 Japan hCoV-19/Japan/PG-0458/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G G26730A GGG28881AAC TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_481639
 2020-03-29 2020-07-03
 Finland hCoV-19/Finland/29M11S3/2020
 G11083T A13117G C14805T C23707T G26144T C28826T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481640
 2020-03-29 2020-07-03
 Finland hCoV-19/Finland/29M14S1/2020
 C241T C3037T C14408T A23403G G29243A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481641
 2020-03-29 2020-07-03
 Finland hCoV-19/Finland/29M15S3/2020
 C241T C1059T C3037T C4230T C14408T A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481642
 2020-03-29 2020-07-03
 Finland hCoV-19/Finland/29M17S2/2020
 C241T C3037T C6401T C14408T C23078T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481643
 2020-03-29 2020-07-03
 Finland hCoV-19/Finland/29M18S2/2020
 C241T C1059T C3037T A7152C C14408T A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481644
 2020-03-29 2020-07-03
 Finland hCoV-19/Finland/29M36S1/2020
 C241T C3037T C14408T A21993T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481645
 2020-03-29 2020-07-03
 Finland hCoV-19/Finland/29M50S2/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481646
 2020-03-29 2020-07-03
 Finland hCoV-19/Finland/29M60S1/2020
 C241T C3037T G4510T C14408T A23403G C23855T C26534T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481647
 2020-03-29 2020-07-03
 Finland hCoV-19/Finland/29M60S2/2020
 C241T C3037T C14408T A23403G C24382T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481648
 2020-03-29 2020-07-03
 Finland hCoV-19/Finland/29M77S3/2020
 C241T C3037T C6401T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_482310
 2020-03-29 2020-07-03
 United States hCoV-19/USA/OR-PROV-026/2020
 C241T C1437T C3037T C14408T A23403G C27630T

EPI_ISL_482311
 2020-03-29 2020-07-03
 United States hCoV-19/USA/OR-PROV-027/2020
 C241T C1059T C3037T C14408T A23403G G25563T G29553A

EPI_ISL_482312
 2020-03-29 2020-07-03
 United States hCoV-19/USA/OR-PROV-028/2020
 A187G C241T C1616T C3037T C14408T A23403G G28041T

EPI_ISL_483301
 2020-03-29 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0685-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C1059T C3037T C11671T C14408T A23403G G25563T

EPI_ISL_483302
 2020-03-29 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0686-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_483303
 2020-03-29 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0687-SAN/2020
 ATT1- C241T T833C C1059T C3037T C14408T G20275T A23403G G25563T C27964T

EPI_ISL_483307
 2020-03-29 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0696-SAN/2020
 AT1- C241T C1059T C3037T C14408T A23403G G25563T C27964T

EPI_ISL_483315
 2020-03-29 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0706-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C379A C1059T C3037T G4657A C14408T G21578T A23403G G25563T

EPI_ISL_483319
 2020-03-29 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0713-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C335T C1059T C3037T C14408T A23403G G25563T C29245T

EPI_ISL_483426
 2020-03-29 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0941-SAN/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T C14408T C16762T A23403G G25563T

EPI_ISL_483430
 2020-03-29 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0953-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T G9105A C14408T A23403G C25614T

EPI_ISL_483431
 2020-03-29 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0955-SAN/2020
 ATTAAAGGTT1- C241T C379A C1059T C3037T G4657A C14408T G21578T A23403G G25563T

EPI_ISL_483701
 2020-03-29 2020-07-08
 Israel hCoV-19/Israel/n14284/2020
 C241T C3037T T3466- A8651C C10036T A11684T T12803G C14408T A16595- C16733T A19818C TG21001- C22802A A23403G ATT27579- TTTACTCTCCAATTTTTCTTA27680- TTT27785- GGG28881AAC A29865G

EPI_ISL_484125
 2020-03-29 2020-07-08
 United Kingdom hCoV-19/England/GSTT-265DF29/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T G13627T C14805T C15540T G25302T A25822T G26144T A28338G G29759T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485917
 2020-03-29 2020-07-10
 United States hCoV-19/USA/CT-UW-2427/2020
 ATTAAAGGT1- C36T C241T C1059T C3037T C6026T C14408T A23403G G25563T C28836T -29904AAAAAAAAAAAAA

EPI_ISL_485920
 2020-03-29 2020-07-10
 United States hCoV-19/USA/CT-UW-2462/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- C36T C241T AAGTCATTT686- C1059T C3037T C14408T A23403G G25563T A26433G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_485921
 2020-03-29 2020-07-10
 United States hCoV-19/USA/CT-UW-2465/2020
 AT1- A4T C36T C241T C1059T C3037T C3768T C14408T A23403G G25563T C29642T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_486003
 2020-03-29 2020-07-10
 United States hCoV-19/USA/WA-UW-2599/2020
 ATTAAAGGTTTATA1- T8623C C8782T C17747T A17858G C18060T T28144C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_486005
 2020-03-29 2020-07-10
 United States hCoV-19/USA/WA-UW-2608/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- C36T C241T C1059T T1211G C3037T C14408T A23403G G24985T G25563T C27964T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_486006
 2020-03-29 2020-07-10
 United States hCoV-19/USA/WA-UW-2609/2020
 AT1- A4D A31T C36T C241T C1059T C3037T C6040T C14408T C19560T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_486009
 2020-03-29 2020-07-10
 United States hCoV-19/USA/WA-UW-2627/2020
 ATTAAAGGT1- C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAA29882-

EPI_ISL_486010
 2020-03-29 2020-07-10
 United States hCoV-19/USA/WA-UW-2651/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A31T C36T C241T T833C C1059T C3037T C14408T C14571T A23403G G25563T A27545G C27964T AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_486011
 2020-03-29 2020-07-10
 United States hCoV-19/USA/WA-UW-2663/2020
 ATTAAAG1- C36T C241T T833C C1059T C3037T C14408T C14571T A23403G G25563T A27545G C27964T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_486033
 2020-03-29 2020-07-10
 United States hCoV-19/USA/WA-UW-2777/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C36T C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_486035
 2020-03-29 2020-07-10
 United States hCoV-19/USA/WA-UW-2781/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C36T C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876M

EPI_ISL_486040
 2020-03-29 2020-07-10
 United States hCoV-19/USA/WA-UW-2862/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C36T C5784T C8782T C17747T A17858G C18060T G26730A T28144C A28402G ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_486041
 2020-03-29 2020-07-10
 United States hCoV-19/USA/WA-UW-2872/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- C36T C241T C1059T C3037T C8888T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_486042
 2020-03-29 2020-07-10
 United States hCoV-19/USA/WA-UW-2875/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C1059T C3037T C14408T A23403G G25563T G29553A TG29867AA C29870A -29904AAAAAAAAAAAAAAAA

EPI_ISL_486043
 2020-03-29 2020-07-10
 United States hCoV-19/USA/WA-UW-2877/2020
 ATTAAAGGTTTATA1- C36T C241T C1059T G1186A C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_486044
 2020-03-29 2020-07-10
 United States hCoV-19/USA/WA-UW-2879/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C241T C1059T C3037T C14408T A23403G G25563T G29553A -29904AAAAAAAAAAA

EPI_ISL_486046
 2020-03-29 2020-07-10
 United States hCoV-19/USA/WA-UW-2902/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C8782T G17427T C17747T A17858G C18060T T28144C ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_486048
 2020-03-29 2020-07-10
 United States hCoV-19/USA/WA-UW-2910/2020
 ATTAAAGGTT1- C241T C1059T C3037T C12880T C14408T A23403G G25563T G29553A AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_486051
 2020-03-29 2020-07-10
 United States hCoV-19/USA/WA-UW-2921/2020
 AT1GA A4T C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872T

EPI_ISL_486052
 2020-03-29 2020-07-10
 United States hCoV-19/USA/WA-UW-2928/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- C36T T7341C C8782T C17747T A17858G C18060T A22429G T28144C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_486053
 2020-03-29 2020-07-10
 United States hCoV-19/USA/WA-UW-2929/2020
 AT1GA A4T C36T C241T C1059T C3037T A3934G G7560A C14408T C21221T A23403G G25563T G29864A TG29867AA C29870A

EPI_ISL_486055
 2020-03-29 2020-07-10
 United States hCoV-19/USA/WA-UW-2936/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C1059T C3037T C14408T A23403G G25563T G29553A AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_486056
 2020-03-29 2020-07-10
 United States hCoV-19/USA/WA-UW-2937/2020
 AT1GA A4T AA34TT C5784T C8782T C17747T A17858G C18060T G26730A T28144C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_486830
 2020-03-29 2020-07-10
 United States hCoV-19/USA/OR-PROV-029/2020
 G11083T C14805T G26144T GTTA26158-

EPI_ISL_487654
 2020-03-29 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2766/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T4114C C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487698
 2020-03-29 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2774/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488458
 2020-03-29 2020-07-14
 United Kingdom hCoV-19/England/NORT-282DEF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G5206T C14408T A23403G T25202K C25350T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488467
 2020-03-29 2020-07-14
 United Kingdom hCoV-19/England/NORT-294F3F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1912T C3037T C14408T A23403G T25202K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488474
 2020-03-29 2020-07-14
 United Kingdom hCoV-19/England/NORT-282DB2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G T25202K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488487
 2020-03-29 2020-07-14
 United Kingdom hCoV-19/England/NORT-294F8A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G27996T C28253T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488491
 2020-03-29 2020-07-14
 United Kingdom hCoV-19/England/NORT-283258/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G8102T G8322A T10567A G11083T C14805T T25202K G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488535
 2020-03-29 2020-07-14
 United Kingdom hCoV-19/England/NORT-283522/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C19185T A23403G T25202K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488560
 2020-03-29 2020-07-14
 United Kingdom hCoV-19/England/NORT-28355F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1912T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488563
 2020-03-29 2020-07-14
 United Kingdom hCoV-19/England/NORT-282E0A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2869G C3037T C14408T G17278T A23403G GGG28881AAC C29095T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488593
 2020-03-29 2020-07-14
 United Kingdom hCoV-19/England/NORT-294F4E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488603
 2020-03-29 2020-07-14
 United Kingdom hCoV-19/England/NORT-282A9D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16329T A20268G A23403G T25202K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488633
 2020-03-29 2020-07-14
 United Kingdom hCoV-19/England/NORT-2834DA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G G2494A C9223T G11083T C14805T T17247C T25202K G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488638
 2020-03-29 2020-07-14
 United Kingdom hCoV-19/England/NORT-294BFF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G T25202K C28854T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488659
 2020-03-29 2020-07-14
 United Kingdom hCoV-19/England/NORT-282FE9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T A23403G C23731T T25202K G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488687
 2020-03-29 2020-07-14
 United Kingdom hCoV-19/England/NORT-282E55/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T T17247C T25202K G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488689
 2020-03-29 2020-07-14
 United Kingdom hCoV-19/England/NORT-295095/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T T25202K G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488700
 2020-03-29 2020-07-14
 United Kingdom hCoV-19/England/NORT-2834CB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G T25202K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488719
 2020-03-29 2020-07-14
 United Kingdom hCoV-19/England/NORT-294E41/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G T25202K G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488720
 2020-03-29 2020-07-14
 United Kingdom hCoV-19/England/NORT-2833BF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C593T T1339C A2480G C2558T G11083T C14805T C23536Y T25202K G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488727
 2020-03-29 2020-07-14
 United Kingdom hCoV-19/England/NORT-294F99/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G C9223T G11083T C14805T T17247C A17799G G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488733
 2020-03-29 2020-07-14
 United Kingdom hCoV-19/England/NORT-294BE0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C225Y G910R G6463R G11083T C14805T T25202K G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488746
 2020-03-29 2020-07-14
 United Kingdom hCoV-19/England/NORT-294FA8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C13667T C14805T A16319W G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488905
 2020-03-29 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2767/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488925
 2020-03-29 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2754/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488937
 2020-03-29 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2768/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3100G G10097A G12749A C14408T A23403G C23731T G25947T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491154
 2020-03-29 2020-07-16
 Oman hCoV-19/Oman/6990/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C3037T G4255T C14408T A20355G A23403G C25702T A26530G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_491916 MT776410
 2020-03-29 2020-07-17
 United States SARS-CoV-2/human/USA/VA_NIDDL_2768/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C815T A2581R C3037T C9936Y C14408T C16111T A23403G G25437T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492890
 2020-03-29 2020-07-20
 United Kingdom hCoV-19/England/LOND-124C58C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G24368T G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493415
 2020-03-29 2020-07-21
 Singapore hCoV-19/Singapore/655/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C6310A C6312A G11083T C13730T C14536Y C19524T C23929T C28311T G29737S AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_493417
 2020-03-29 2020-07-21
 Singapore hCoV-19/Singapore/657/2020
 ATTAAAGGTTTATACC1- C6310A C6312A G11083T C13730T C19524T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_493419
 2020-03-29 2020-07-21
 Singapore hCoV-19/Singapore/659/2020
 T78G T1368C C6990T G11083T C14805T C20736T C23707T G26144T AAAAAAAAAAAA29892-

EPI_ISL_497806
 2020-03-29 2020-07-25
 China hCoV-19/Hong Kong/HKU-200723-039/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501199
 2020-03-29 2020-07-31
 Malaysia hCoV-19/Malaysia/3012/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- AAGTCATTT686- A3223G C6312A C9438T C9803T G11083T C13730T C23929T C28311T T29867A C29870A

EPI_ISL_501620
 2020-03-29 2020-07-31
 United Kingdom hCoV-19/England/EKHU-260EFBE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1505A C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_506985
 2020-03-29 2020-08-02
 South Korea hCoV-19/Korea/KCDC2191/2020
 ATTAAAGGTTTAT1- G5572T G11083T C14805T G26144T G27441T G28580T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_507076
 2020-03-29 2020-08-03
 United Kingdom hCoV-19/England/LOND-124D293/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C4931T C14408T A23403G C26534T C28312T GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_507077
 2020-03-29 2020-08-03
 United Kingdom hCoV-19/England/LOND-124D2A2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23403G C26534T GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_507093
 2020-03-29 2020-08-03
 United Kingdom hCoV-19/England/LOND-124D3BE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_507883
 2020-03-29 2020-08-03
 United States hCoV-19/USA/MI-MDHHS-SC21107/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T C3037T C14408T G16793R A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507907
 2020-03-29 2020-08-03
 United States hCoV-19/USA/MI-MDHHS-SC21131/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C193T C241T C1059T C3037T C14408T A23403G C24378T G25563T ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_508661
 2020-03-29 2020-08-04
 Spain hCoV-19/Spain/Barcelona-COV005626/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T A9922C C14408T T17863C A20268G A23403G C24802T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_508904
 2020-03-29 2020-08-04
 France hCoV-19/France/ARA16170/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAA1- C241T C3037T C14408T C15324T G21399T A23403G C27513T C27874T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_508905
 2020-03-29 2020-08-04
 France hCoV-19/France/ARA16213/2020
 ATTAAAG1- C241T C3037T C14408T G18315A G21724T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_508906
 2020-03-29 2020-08-04
 France hCoV-19/France/ARA16220/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTC1- C241T C337T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_508907
 2020-03-29 2020-08-04
 France hCoV-19/France/ARA16251/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C3373A C6113T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_509758 MT846462
 2020-03-29 2020-08-05
 United States SARS-CoV-2/human/USA/FL-BPHL-0700/2020
 AT1- C8782T C17747T A17858G C18060T A24694T T28144C GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_510902
 2020-03-29 2020-08-07
 Portugal hCoV-19/Portugal/PT0641/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C3140T C14408T A23403G G24077T G27014T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_510903
 2020-03-29 2020-08-07
 Portugal hCoV-19/Portugal/PT0642/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_510905
 2020-03-29 2020-08-07
 Portugal hCoV-19/Portugal/PT0644/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T C21575T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_510906
 2020-03-29 2020-08-07
 Portugal hCoV-19/Portugal/PT0645/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T G11083T C12880T C14408T C14639T T18954C A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511176
 2020-03-29 2020-08-07
 Portugal hCoV-19/Portugal/PT0919/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T T9660C C14408T A22108G A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511177
 2020-03-29 2020-08-07
 Portugal hCoV-19/Portugal/PT0920/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTA1- C2143T C8782T T9477A C14805T G25785T G25979T T28144C C28657T C28863T C29200T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511190
 2020-03-29 2020-08-07
 Portugal hCoV-19/Portugal/PT1229/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G T27299C C27944T G28632T GGG28881AAC T29148C TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511360
 2020-03-29 2020-08-07
 Portugal hCoV-19/Portugal/PT1401/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T T721C C3037T C14408T G18910T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511419
 2020-03-29 2020-08-07
 Portugal hCoV-19/Portugal/PT1460/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511466
 2020-03-29 2020-08-07
 Portugal hCoV-19/Portugal/PT1507/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G G24794T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511516
 2020-03-29 2020-08-08
 Portugal hCoV-19/Portugal/PT0967/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- G91A C241T C3037T G11083T C14408T C15324T A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511517
 2020-03-29 2020-08-08
 Portugal hCoV-19/Portugal/PT0968/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T T505C C3037T C3261T C14408T A15984T C20946T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511521
 2020-03-29 2020-08-08
 Portugal hCoV-19/Portugal/PT0972/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C8782T T9477A C14805T A21694G G25979T T28144C C28657T C28863T C28932T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511648
 2020-03-29 2020-08-08
 Portugal hCoV-19/Portugal/PT1101/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G376T C1059T C3037T T13006C C14408T A23403G G25563T C25688T G28851T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511767
 2020-03-29 2020-08-08
 Portugal hCoV-19/Portugal/PT1224/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C1059T C3037T G11083T T14394C C14408T G16852T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511768
 2020-03-29 2020-08-08
 Portugal hCoV-19/Portugal/PT1225/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C1059T C3037T G11083T T14394C C14408T G16852T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511769
 2020-03-29 2020-08-08
 Portugal hCoV-19/Portugal/PT1226/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C1059T C3037T G11083T T14394C C14408T G16852T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511771
 2020-03-29 2020-08-08
 Portugal hCoV-19/Portugal/PT1228/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C10623T C11620T C14408T A23403G G25429T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_513305 MT704823
 2020-03-29 2020-07-03
 Germany SARS-CoV-2/human/DEU/SCoV2_8ZK/2020
 C241T C1059T C3037T C14408T G15380T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_513306 MT704824
 2020-03-29 2020-07-03
 Germany SARS-CoV-2/human/DEU/SCoV2_9ZK/2020
 C241T C3037T C3373A C14408T A23403G GGG28881AAC GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_513307 MT704825
 2020-03-29 2020-07-03
 Germany SARS-CoV-2/human/DEU/SCoV2_10ZK/2020
 AAGTCATTT686- G1440A G2891A A9935G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_515270
 2020-03-29 2020-08-18
 United States hCoV-19/USA/ID-UW-4601/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGT1- C241T T833C C1059T C3037T C9636T C14408T A23403G G25563T C27964T GCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29742-

EPI_ISL_515277
 2020-03-29 2020-08-18
 United States hCoV-19/USA/WA-UW-4599/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGT1- G6362A C8782T C17747T A17858G C18060T T28144C GCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29742-

EPI_ISL_515284
 2020-03-29 2020-08-18
 United States hCoV-19/USA/WA-UW-4620/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGT1- C241T C1059T C3037T C14408T C16887T A23403G G25563T GCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29742-

EPI_ISL_515285
 2020-03-29 2020-08-18
 United States hCoV-19/USA/WA-UW-4623/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGT1- C241T C1059T C3037T C14408T A23403G G25563T G29553A GCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29742-

EPI_ISL_515340
 2020-03-29 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0058/2020
 ATTAAAGGTTTATACCTTC1- C241T C379A C1059T C3037T CC14407TT A23403G G25563T

EPI_ISL_515341
 2020-03-29 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0059/2020
 C241T C379A C1059T C3037T CC14407TT A23403G G25563T

EPI_ISL_515342
 2020-03-29 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0060/2020
 ATTA1- C241T C379A C1059T C3037T CC14407TT A23403G G25563T

EPI_ISL_516351
 2020-03-29 2020-08-20
 United States hCoV-19/USA/MI-MDHHS-SC21624/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516360
 2020-03-29 2020-08-20
 United States hCoV-19/USA/MI-MDHHS-SC21633/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T C3037T C14408T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_516363
 2020-03-29 2020-08-20
 United States hCoV-19/USA/MI-MDHHS-SC21636/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C1059T C3037T C14408T G22017K A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_518867 MT920006
 2020-03-29 2020-08-25
 United States SARS-CoV-2/human/USA/MN-MDH-1473/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23403G A28858G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_520720
 2020-03-29 2020-08-25
 United Arab Emirates hCoV-19/United Arab Emirates/L920632111/2020
 C241T C3037T C14408T A21169G A23403G GGG28881AAC

EPI_ISL_523605
 2020-03-29 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-263/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3874T C14408T A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_524534
 2020-03-29 2020-08-28
 United Kingdom hCoV-19/Scotland/GCVR-171CC9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G G23405A C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524563
 2020-03-29 2020-08-28
 United Kingdom hCoV-19/Scotland/GCVR-170E00/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4540T C4931Y C8782T T9477A C14183T C14805T C25714T G25979T C26029A T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524696
 2020-03-29 2020-08-28
 United Kingdom hCoV-19/England/LOND-1261590/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C28093T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524706
 2020-03-29 2020-08-28
 United Kingdom hCoV-19/England/LOND-126169D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T10135C G14188A C14408T A23403G G28001T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525637
 2020-03-29 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-32689-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C7932T C14408T A23403G G25563T C26522T C29585T GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_526819
 2020-03-29 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0602/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C8782T G16917T C17747T A17858G C18060T A24694T C26256T T28144C TCACCGAGGCCACGCGGAG29729-

EPI_ISL_526821
 2020-03-29 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0604/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- A38R C241T C1059T C3037T C3619T C14408T C16750T T22939C A23403G G25563T C29870A

EPI_ISL_526825
 2020-03-29 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0608/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C3037T A8633G C14408T A23403G G25563T G29736T C29870A

EPI_ISL_529135
 2020-03-29 2020-09-10
 Japan hCoV-19/Japan/QH-329-037/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C2110T C2416T C3037T G8371T C14408T T21048C A23403G G25563T TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_530050
 2020-03-29 2020-09-10
 Spain hCoV-19/Spain/MD-LP46/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G16744A A19409G A20268G G21190A A23403G C24023T T26301G ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_530224 MT997746
 2020-03-29 2020-09-10
 United States SARS-CoV-2/human/USA/MN-MDH-1628/2020
 ATTAAAGGTTTATACCT1- C8782T A17858G C18060T A24694T T28144C TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_534900
 2020-03-29 2020-09-14
 United Kingdom hCoV-19/England/OXON-B3AC2/2020
 A7479G G11083T C14805T T17247C T17445C C25572T G26144T A26530G C28887T

EPI_ISL_534915
 2020-03-29 2020-09-14
 United Kingdom hCoV-19/England/OXON-B3EA8/2020
 C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T C27970T GGG28881AAC G29513T

EPI_ISL_534935
 2020-03-29 2020-09-14
 United Kingdom hCoV-19/England/OXON-B4180/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACG1- C241T C3037T G11083T C14408T A23403G TTTGTGCTT27785- GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_534938
 2020-03-29 2020-09-14
 United Kingdom hCoV-19/England/OXON-B41F9/2020
 G1440A G2891A AAAAAAAAAAAAAAA29889-

EPI_ISL_534939
 2020-03-29 2020-09-14
 United Kingdom hCoV-19/England/OXON-B4205/2020
 G1440A G2891A T9931C A11268G A27669G

EPI_ISL_534944
 2020-03-29 2020-09-14
 United Kingdom hCoV-19/England/OXON-B42AB/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_534945
 2020-03-29 2020-09-14
 United Kingdom hCoV-19/England/OXON-B42BA/2020
 C241T G2164T C3037T C14408T G17014T A23403G C24579T GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_534976
 2020-03-29 2020-09-14
 United Kingdom hCoV-19/England/OXON-B4803/2020
 ATTAAAGGTTTA1- C241T C3037T C14408T C14708T A23403G G24038T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_536312
 2020-03-29 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00242228/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25563T TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_536313
 2020-03-29 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00242235/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C8986T C14408T A20755C A23403G G25563T TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_536319
 2020-03-29 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00242384/2020
 ATTAAAGGTTTA1- C241T T2083C C3037T C5512T T9667C C14408T A23403G G25947T G28361A GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_536322
 2020-03-29 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00242487/2020
 ATTAAAGGTT1- C241T C3037T C14408T C15324T T20315C A23403G GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_536323
 2020-03-29 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00242505/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C3037T C14408T C15324T T20315C A23403G TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_536328
 2020-03-29 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00242576/2020
 ATTAAAGGTT1- C241T C1059T C3037T C3096Y C7072T C7945T T11611C C14408T A23403G G25563T G28086R T28088W CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_536331
 2020-03-29 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00242662/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T G15260T A20755C C22388T A23403G G25563T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_536332
 2020-03-29 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00242684/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C7072T T11611C C14408T A23403G G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_536335
 2020-03-29 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00242714/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C3037T C14408T A23403G G25563T G28086R T28088W AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_536353
 2020-03-29 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00243284/2020
 ATTAA1- C241T C1059T C3037T C14408T A23403G G25563T G27877T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_537390
 2020-03-29 2020-09-16
 Spain hCoV-19/Spain/RI-CSIC-99005847/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C1059T C3037T T13006C C14408T G15340A G17302T T18648A A23403G G25563T C25688T TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_537493
 2020-03-29 2020-09-16
 United States hCoV-19/USA/CA-UCLA-154/2020
 ATTAAAGGTTTATA1- C2676T C8782T C21575T A22606T G23755T T28144C G28878A G29742A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_537512
 2020-03-29 2020-09-16
 United States hCoV-19/USA/CA-UCLA-202/2020
 ATTAAAGGTTTATA1- C241T C1059T C3037T T6905G C14408T A23403G G25563T GTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29828-

EPI_ISL_537856
 2020-03-29 2020-09-16
 Spain hCoV-19/Spain/RI-CSIC-98002345/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C1059T C3037T T13006C C14408T A23403G G25563T C25688T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_538462
 2020-03-29 2020-09-17
 Singapore hCoV-19/Singapore/930/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538463
 2020-03-29 2020-09-17
 Singapore hCoV-19/Singapore/931/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6310A C6312A G11083T C13730T C19524T C23929T C26882T C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538464
 2020-03-29 2020-09-17
 Singapore hCoV-19/Singapore/932/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G5429A G9220A C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538819
 2020-03-29 2020-09-17
 United Kingdom hCoV-19/England/LEED-2AA367/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C19547T A23403G C25350T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538928
 2020-03-29 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9CF4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538948
 2020-03-29 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9D3D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1884T C2416T C3037T C14408T A23403G C25508T G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538961
 2020-03-29 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9E1C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15371T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538966
 2020-03-29 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9D4C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T G13627T C14805T C15540T G17808T G26144T C26911T A28338G C29721T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538968
 2020-03-29 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9D1F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C14408T A23403G C25508T G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538972
 2020-03-29 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9D2E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C15952T C26088T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539013
 2020-03-29 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A86F7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4897T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539038
 2020-03-29 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8A55/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539086
 2020-03-29 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8606/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1912Y C3037T A10948G C12973Y C14408T A23403G C26060Y C27542T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539187
 2020-03-29 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A84FD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10449T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539200
 2020-03-29 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A841B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1912T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539820
 2020-03-29 2020-09-21
 China hCoV-19/Hong Kong/VM20006777/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6027T C6629T A10236G G11083T C14805T T17247C G23900C G26144T G28083T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541771
 2020-03-29 2020-09-23
 United Kingdom hCoV-19/England/LOND-1286ED6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541782
 2020-03-29 2020-09-23
 United Kingdom hCoV-19/England/LOND-1286D7F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A10236G C14408T C17163T A23403G GGG28881AAC G29315S CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542578
 2020-03-29 2020-09-23
 United States hCoV-19/USA/TX-HMH-1190/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T14104C C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542615
 2020-03-29 2020-09-23
 United States hCoV-19/USA/TX-HMH-1256/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T5065C C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_565962
 2020-03-29 2020-09-30
 United States hCoV-19/USA/MI-MDHHS-SC21901/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T G17790K C18707A A23403G G25563T C25976A TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

MT293163
 2020-03-29 2020-04-03
 United States SARS-CoV-2/human/USAUNKNOWN-UW398/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGA1- C5170T C8782T C16468T T17673C C17747T A17858G C18060T T28144C CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

MT380728
 2020-03-29 2020-04-24
 United States SARS-CoV-2/human/USA/DC-CDC-1734/2020
 C241T C1059T C3037T C14408T A23403G C24034T G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MT459837
 2020-03-29 2020-05-11
 Greece SARS-CoV-2/human/GRC/35_36913/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- A2480G C2558T G11083T C14805T C20402T G24926T G26144T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

MT459841
 2020-03-29 2020-05-11
 Greece SARS-CoV-2/human/GRC/39_36914/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T A2590G C3037T C14408T C18264T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

MT477849
 2020-03-29 2020-05-14
 United States SARS-CoV-2/human/USA/AK077/2020
 ATTAAAGGTTTATAC1- C241T C3037T C6504T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

MT706289
 2020-03-29 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-161/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G6894T C19029T G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706290
 2020-03-29 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-162/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C10626T G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT811314
 2020-03-29 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0685-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C11671T C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811315
 2020-03-29 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0686-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811316
 2020-03-29 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0687-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- T833C C1059T C3037T C14408T G20275T A23403G G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811320
 2020-03-29 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0696-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T A23403G G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811328
 2020-03-29 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0706-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C379A C1059T C3037T G4657A C14408T G21578T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811332
 2020-03-29 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0713-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C335T C1059T C3037T C14408T A23403G G25563T C29245T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811433
 2020-03-29 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0941-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T C16762T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811437
 2020-03-29 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0953-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T G9105A C14408T A23403G C25614T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811438
 2020-03-29 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0955-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C379A C1059T C3037T G4657A C14408T G21578T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

NMDC60013220
 2020-03-29 2020-06-01
 China hCoV-19/Guangzhou/ID111/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417004
 2020-03-30 2020-03-23
 Belgium hCoV-19/Belgium/ULG-3000/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417014
 2020-03-30 2020-03-23
 Belgium hCoV-19/Belgium/ULG-6216/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15852T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417015
 2020-03-30 2020-03-23
 Belgium hCoV-19/Belgium/ULG-6457/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2447A C3037T C7564T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420142
 2020-03-30 2020-04-05
 Georgia hCoV-19/Georgia/Tb-1523/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G1397A G11083T C14925T C26029A C26058T ATG27985GAA T28688C G29742T -29904AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

EPI_ISL_420751
 2020-03-30 2020-04-06
 United Kingdom hCoV-19/England/20140038704/2020
 C241T C3037T C8357T C14408T A23403G GGG28881AAC

EPI_ISL_420767
 2020-03-30 2020-04-06
 United Kingdom hCoV-19/England/20142060804/2020
 C241T C3037T C14408T T14709C A23403G GGG28881AAC

EPI_ISL_420772
 2020-03-30 2020-04-06
 United Kingdom hCoV-19/England/20142061804/2020
 C241T C3037T C5826T C14408T C16289T A23403G G25429T G27703T G28576A

EPI_ISL_421183
 2020-03-30 2020-04-07
 Belgium hCoV-19/Belgium/ULG-10003/2020
 C241T C2113T C3037T C7765T C14408T C17690T C18877T C19102T C21575T A23403G G25563T

EPI_ISL_421184
 2020-03-30 2020-04-07
 Belgium hCoV-19/Belgium/ULG-10004/2020
 C241T C1059T C3037T C4320T G11083T C14408T C19264T C21590T TTT21990- A23403G G25563T C25688T

EPI_ISL_421186
 2020-03-30 2020-04-07
 Belgium hCoV-19/Belgium/ULG-10007/2020
 C241T C3037T G4255T C14408T G20995T A23403G A26530G

EPI_ISL_421187
 2020-03-30 2020-04-07
 Belgium hCoV-19/Belgium/ULG-10008/2020
 C241T A618G C3037T C14408T C15024T C15324T C16887T A23403G C27679T

EPI_ISL_421189
 2020-03-30 2020-04-07
 Belgium hCoV-19/Belgium/ULG-10011/2020
 C241T C2113T C3037T C7765T C14408T C17690T C18877T C19102T C21575T A23403G G25563T

EPI_ISL_421190
 2020-03-30 2020-04-07
 Belgium hCoV-19/Belgium/ULG-10012/2020
 C241T C2113T C3037T C7765T C14408T C17690T C18877T A23403G G25563T C26042T

EPI_ISL_421200
 2020-03-30 2020-04-07
 Belgium hCoV-19/Belgium/ULG-10026/2020
 C241T C2113T C3037T C7765T C14408T C15928T C17690T C18877T A23403G G25563T

EPI_ISL_421204
 2020-03-30 2020-04-07
 Belgium hCoV-19/Belgium/ULG-10030/2020
 C241T C3037T C14408T C15324T A23403G

EPI_ISL_421205
 2020-03-30 2020-04-07
 Belgium hCoV-19/Belgium/ULG-10031/2020
 G105A C241T C2773T C3037T C14408T G17193T C18348T A23403G

EPI_ISL_421938
 2020-03-30 2020-04-09
 United Kingdom hCoV-19/England/20144018204/2020
 G11083T C14805T T16906C A17066W T17247C A22375R G26144T

EPI_ISL_422002
 2020-03-30 2020-04-09
 United Kingdom hCoV-19/England/20148006104/2020
 A2480G C2558T G11083T C14805T G20126R G26144T

EPI_ISL_422022
 2020-03-30 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-26D49/2020
 C241T C3037T C14408T C21242T A23403G G25947T GGG28881AAC

EPI_ISL_422023
 2020-03-30 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-26981/2020
 ATTA1- C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_422031
 2020-03-30 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-26DD0/2020
 A1- C241T C3037T T3788Y G5561A C14408T C21242T A23403G GGG28881AAC

EPI_ISL_422035
 2020-03-30 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-26D58/2020
 AT1- C241T C1059T C3037T C14408T C16887T A23403G G24368T G25563T

EPI_ISL_422040
 2020-03-30 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-26D1C/2020
 A1- G1440A G2891A C14599Y C25669Y G28851T

EPI_ISL_422047
 2020-03-30 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-26F34/2020
 C241T C1059T C3037T G9136T C14408T T15684C A23403G G25563T

EPI_ISL_422050
 2020-03-30 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-26DEF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G1440A G2891A C24382T C25669T G28851T

EPI_ISL_422051
 2020-03-30 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-26A51/2020
 A1- G1440A G2891A G17523T G24140T G28851T C29592T

EPI_ISL_422058
 2020-03-30 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-26E91/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- A2480G C2558T C7165T G11083T C14805T A23702T G26144T

EPI_ISL_422059
 2020-03-30 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-26FE9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G1440A G2891A G4720T C16329T A27669G

EPI_ISL_422061
 2020-03-30 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-26E82/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C14741T A23403G

EPI_ISL_422062
 2020-03-30 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-269AF/2020
 ATTA1- C241T A489G C3037T C14408T A20268G A23403G G23593K C28854T

EPI_ISL_422068
 2020-03-30 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-26EFB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G1440A C1722T G2891A G28851T

EPI_ISL_422076
 2020-03-30 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-26D3A/2020
 C241T C3037T G4504A G6364T G11801A C14408T T16671C T19839C A23403G G25552T GGG28881AAC

EPI_ISL_422081
 2020-03-30 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-26EBF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T C3037T C14120T C14408T A23403G G24368T C24621T G25563T C28893T C29353T

EPI_ISL_422088
 2020-03-30 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-26DC1/2020
 C241T C1911T C3037T G4504A G6364T G11801A C14408T T16671C T19839C A23403G G25552T GGG28881AAC

EPI_ISL_422089
 2020-03-30 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-26DA3/2020
 G1440A G2891A C25669T G28851T

EPI_ISL_422090
 2020-03-30 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-26ECE/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C3037T C14408T T18843Y A20268G A23403G

EPI_ISL_422097
 2020-03-30 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-26D0D/2020
 ATTAAAGGTTTATACCTTCCCA1- G11083T C14805T T17247C G26144T C29482T

EPI_ISL_422115
 2020-03-30 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-26EDD/2020
 AT1- C3738T G11083T G12188T C14805T T17247C G26144T

EPI_ISL_422120
 2020-03-30 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-26FBC/2020
 ATTA1- C241T C3037T C14408T A21999G A23403G T26512C

EPI_ISL_422122
 2020-03-30 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-26E73/2020
 AT1- C241T C3037T C14408T A21999G A23403G C23709T T26512C

EPI_ISL_422123
 2020-03-30 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-26FCB/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_422566 LR878061
 2020-03-30 2020-04-11
 Netherlands hCoV-19/Netherlands/Friesland_10/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T13006C C14408T A23403G G25563T C25688T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422576 LR878000
 2020-03-30 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_265/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422577 LR877999
 2020-03-30 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_266/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C8733T C11109T C14408T A23403G G25563T G29422T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422578 LR878001
 2020-03-30 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_267/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3768T G6337A C14408T G16945T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422579 LR878005
 2020-03-30 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_268/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C11109T C14408T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422580 LR878014
 2020-03-30 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_269/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A6731T G11083T C14805T C23707T G26144T T27384C C27881T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422581 LR878008
 2020-03-30 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_270/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- C18647T C26681T T29238C G29628T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422583 LR878010
 2020-03-30 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_272/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422585 LR878011
 2020-03-30 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_274/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2113T C3037T C7765T A12121G C14408T C17690T C18877T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422632 LR878013
 2020-03-30 2020-04-11
 Netherlands hCoV-19/Netherlands/ZuidHolland_96/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18788T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422787 LR877992
 2020-03-30 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_253/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G12550A C14408T A20268G C20740A A23403G G26501T G29734C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422788 LR877988
 2020-03-30 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_254/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T13006C C14408T A23403G G25563T C25688T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422790 LR877985
 2020-03-30 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_256/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4255T C5284T C14408T T16456G C20051T A23403G C24117T A26530G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422791 LR877991
 2020-03-30 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_257/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422792 LR877996
 2020-03-30 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_258/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C5512T C11109T C12415T C14408T A23403G G25563T G28655T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422793 LR877987
 2020-03-30 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_259/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C486T C3037T C14408T C20719T A23403G T28678A GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422794 LR878006
 2020-03-30 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_260/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C3037T C14408T A23403G C25904T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422795 LR878002
 2020-03-30 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_261/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18788T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422796 LR878003
 2020-03-30 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_262/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G C28854T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_423393
 2020-03-30 2020-04-12
 United Kingdom hCoV-19/England/20140064004/2020
 G2659T G11083T G13627T C14805T C15540T C23127T G26144T A28338G

EPI_ISL_423394
 2020-03-30 2020-04-12
 United Kingdom hCoV-19/England/20140064504/2020
 C110T C241T G1883R C2416T C3037T C14408T C17069A C18557T G20578T A23403G G25563T

EPI_ISL_423400
 2020-03-30 2020-04-12
 United Kingdom hCoV-19/England/20140068404/2020
 A12C C241T C2416T C3037T G3246K C8290Y C14408T C14786T G20578T A23403G T25485C G25563T

EPI_ISL_423404
 2020-03-30 2020-04-12
 United Kingdom hCoV-19/England/20140069404/2020
 C241T C3037T C14408T C17004Y A23403G GGG28881AAC

EPI_ISL_423408
 2020-03-30 2020-04-12
 United Kingdom hCoV-19/England/20140070504/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_423409
 2020-03-30 2020-04-12
 United Kingdom hCoV-19/England/20140070604/2020
 C241T C3037T C14408T C18029Y A23403G GGG28881AAC

EPI_ISL_423410
 2020-03-30 2020-04-12
 United Kingdom hCoV-19/England/20140070804/2020
 C241T C3037T C14408T A23403G C25482T GGG28881AAC

EPI_ISL_423424
 2020-03-30 2020-04-12
 United Kingdom hCoV-19/England/20142002704/2020
 C241T C3037T C3373A C6752T C11195T C14408T C15216T A23403G GGG28881AAC

EPI_ISL_423425
 2020-03-30 2020-04-12
 United Kingdom hCoV-19/England/20142002904/2020
 C241T C313T C3037T C14408T A23403G C27128T GGG28881AAC

EPI_ISL_423426
 2020-03-30 2020-04-12
 United Kingdom hCoV-19/England/20142003904/2020
 A7755G G11083T G13627T C14805T C15540T C16466Y A16638G G26144T A28338G G28851T

EPI_ISL_423436
 2020-03-30 2020-04-12
 United Kingdom hCoV-19/England/20142016504/2020
 C241T C3037T G6463R C6573T C8655Y C14408T G22992S A23403G C25528T GGG28881AAC

EPI_ISL_423437
 2020-03-30 2020-04-12
 United Kingdom hCoV-19/England/20142016704/2020
 C241T C3037T C14408T A23403G G25429T

EPI_ISL_423438
 2020-03-30 2020-04-12
 United Kingdom hCoV-19/England/20142018004/2020
 C241T C3037T C14408T A20268G C22295T A23403G G29734C

EPI_ISL_423460
 2020-03-30 2020-04-12
 United Kingdom hCoV-19/England/20142079504/2020
 C241T AAGTCATTT686- C3037T C14408T A23403G G25429T C25916T

EPI_ISL_423461
 2020-03-30 2020-04-12
 United Kingdom hCoV-19/England/20142079804/2020
 A2480G C2558T TG2800YK C7011T C10615T G11083T G11405A C14805T A19476G G26144T C28869T

EPI_ISL_423466
 2020-03-30 2020-04-12
 United Kingdom hCoV-19/England/20142083804/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_423467
 2020-03-30 2020-04-12
 United Kingdom hCoV-19/England/20142130404/2020
 A2480G C2558T G11083T C14805T A18802R G26144T G27870K

EPI_ISL_423495
 2020-03-30 2020-04-12
 United Kingdom hCoV-19/England/20144006704/2020
 C241T C3037T G10097A C14408T A23403G C23731T C27684T GGG28881AAC

EPI_ISL_423496
 2020-03-30 2020-04-12
 United Kingdom hCoV-19/England/20144006904/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_423506
 2020-03-30 2020-04-12
 United Kingdom hCoV-19/England/20144011504/2020
 C8782T C15216T C17747T A17858G C18060T C27769T T28144C

EPI_ISL_425149
 2020-03-30 2020-04-14
 United States hCoV-19/USA/WI-UW-92/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G15760A A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425151
 2020-03-30 2020-04-14
 United States hCoV-19/USA/WI-UW-94/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A3463G C11224T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425152
 2020-03-30 2020-04-14
 United States hCoV-19/USA/WI-UW-95/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11417T T14073C C14408T A23403G A23947G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425159
 2020-03-30 2020-04-14
 United States hCoV-19/USA/WI-UW-102/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4755T C8316T C14408T G15760A T20157C A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425162
 2020-03-30 2020-04-14
 United States hCoV-19/USA/WI-UW-105/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C11591T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425163
 2020-03-30 2020-04-14
 United States hCoV-19/USA/WI-UW-106/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16830T C16887T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425165
 2020-03-30 2020-04-14
 United States hCoV-19/USA/WI-UW-108/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3871T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425166
 2020-03-30 2020-04-14
 United States hCoV-19/USA/WI-UW-109/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425169
 2020-03-30 2020-04-14
 United States hCoV-19/USA/WI-UW-112/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11417T T14073C C14408T A23403G A23947G G28539T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425171
 2020-03-30 2020-04-14
 United States hCoV-19/USA/WI-UW-114/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A14330G C14408T A23403G T27299C A27989G GGG28881AAC T29148C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425173
 2020-03-30 2020-04-14
 United States hCoV-19/USA/WI-UW-116/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T G16381A C16428T T17877C C20316T G25500T C26124T T28144C G28878A G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425174
 2020-03-30 2020-04-14
 United States hCoV-19/USA/WI-UW-117/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T G16381A T17877C C20316T G25500T G26211T T28144C G28878A G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425231
 2020-03-30 2020-04-14
 United Kingdom hCoV-19/England/CAMB-7374F/2020
 G160T C241T G2625A C3037T C13862T C14408T T17565C A23403G G26529T C28836T

EPI_ISL_425232
 2020-03-30 2020-04-14
 United Kingdom hCoV-19/England/CAMB-7375E/2020
 C241T C3037T T8125C T8395C C14408T C19488T A23403G GGG28881AAC

EPI_ISL_425233
 2020-03-30 2020-04-14
 United Kingdom hCoV-19/England/CAMB-7376D/2020
 C241T C3037T C6027T C14408T A23403G GGG28881AAC

EPI_ISL_425235
 2020-03-30 2020-04-14
 United Kingdom hCoV-19/England/CAMB-7378B/2020
 C241T C3037T C10755T C14408T A23403G GGG28881AAC

EPI_ISL_425236
 2020-03-30 2020-04-14
 United Kingdom hCoV-19/England/CAMB-7379A/2020
 A187G C241T C3037T C14408T A23403G

EPI_ISL_425238
 2020-03-30 2020-04-14
 United Kingdom hCoV-19/England/CAMB-737B8/2020
 A2480G C2558T G3971T G11083T C14805T G26144T G28380T

EPI_ISL_425248
 2020-03-30 2020-04-14
 United Kingdom hCoV-19/England/CAMB-73888/2020
 C241T T1099C C3037T C4002T C5643T G10097A C13536T C14408T A23403G C23731T GGG28881AAC

EPI_ISL_425257
 2020-03-30 2020-04-14
 United Kingdom hCoV-19/England/CAMB-73949/2020
 C241T C1059T C3037T C14408T A23403G G25217T G25563T

EPI_ISL_425277
 2020-03-30 2020-04-14
 United Kingdom hCoV-19/England/CAMB-73ADD/2020
 G1440A G2891A C4668T C21742T

EPI_ISL_425281
 2020-03-30 2020-04-14
 United Kingdom hCoV-19/England/CAMB-74368/2020
 C241T C392T C3037T C11563T C14408T C19488T A23403G GGG28881AAC

EPI_ISL_425309
 2020-03-30 2020-04-14
 United Kingdom hCoV-19/England/CAMB-7459F/2020
 A187G C241T C3037T C14408T A23403G

EPI_ISL_425423
 2020-03-30 2020-04-14
 United Kingdom hCoV-19/England/CAMB-76D1D/2020
 C241T C3037T C14408T A23403G G25429T

EPI_ISL_425425
 2020-03-30 2020-04-14
 United Kingdom hCoV-19/England/CAMB-76D59/2020
 A2480G C2558T G11083T C14805T A19352C T21709C G26144T

EPI_ISL_425430
 2020-03-30 2020-04-14
 United Kingdom hCoV-19/England/CAMB-76DFF/2020
 C241T C664T C3037T C14408T A20268G A23403G C23430T G26230T C28926T C29545A G29759T

EPI_ISL_425431
 2020-03-30 2020-04-14
 United Kingdom hCoV-19/England/CAMB-76E1A/2020
 C241T C3037T C14408T A23403G C25521T G28514T

EPI_ISL_425433
 2020-03-30 2020-04-14
 United Kingdom hCoV-19/England/CAMB-76E56/2020
 C241T C3037T C14408T C18060T A23403G G28514T

EPI_ISL_425628
 2020-03-30 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10EA30/2020
 C241T C703T C3037T C14408T T15351G G21518T A23403G C28310A

EPI_ISL_425632
 2020-03-30 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10EA7C/2020
 ATG1605- C14220T C20270T C23525T C25728T

EPI_ISL_425635
 2020-03-30 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10EAA9/2020
 G1440A G2891A A27669G

EPI_ISL_425637
 2020-03-30 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10EAC7/2020
 C241T C3037T A7877G T11798C C14408T C16289T TTTGGGTGTTTA21982- A23403G G25429T

EPI_ISL_425638
 2020-03-30 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10EAD6/2020
 ATG1605- G4504T C13965T C20270T

EPI_ISL_425639
 2020-03-30 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10EAE5/2020
 C241T C3037T C14408T A23403G G25429T C25587T C28045T

EPI_ISL_425640
 2020-03-30 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10EAF4/2020
 C241T C3037T C6312A A10948G C14408T A23403G GGG28881AAC

EPI_ISL_425642
 2020-03-30 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10EB2E/2020
 A2480G C2558T G11083T C14805T G26144T

EPI_ISL_425976
 2020-03-30 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB342/2020
 C241T C3037T C14408T C16289T A23403G G25429T G28077T

EPI_ISL_425978
 2020-03-30 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB354/2020
 C7423T A29780C

EPI_ISL_425980
 2020-03-30 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB356/2020
 C241T C3037T T14079C C14408T A23403G GGG28881AAC

EPI_ISL_425985
 2020-03-30 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB373/2020
 C241T C3037T A3215G C14408T G15438T A20268G A23403G

EPI_ISL_425986
 2020-03-30 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB374/2020
 C222T C241T C3037T C4252T C14408T A23403G GGG28881AAC

EPI_ISL_425987
 2020-03-30 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB378/2020
 C241T C3037T C6606T C14408T A23403G T23590C C25782T GGG28881AAC

EPI_ISL_425988
 2020-03-30 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB379/2020
 C241T T1252G C3037T A3215G C14408T G15438T A20268G A23403G

EPI_ISL_425990
 2020-03-30 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB383/2020
 C241T C313T C3037T C14408T C17676T A23403G GGG28881AAC

EPI_ISL_425991
 2020-03-30 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB386/2020
 G1440A G2891A C10507T G25563T

EPI_ISL_425992
 2020-03-30 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB389/2020
 C241T C1059T C1076T C3037T C10582T C14408T A23403G G25563T

EPI_ISL_425993
 2020-03-30 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB390/2020
 

EPI_ISL_425994
 2020-03-30 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB391/2020
 C241T C1059T C3037T C11747T C14408T C22987T A23403G T24475A G25563T

EPI_ISL_425995
 2020-03-30 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB392/2020
 C241T C3037T C8074T C14408T A20268G C21846T A23403G G28727T G29734C

EPI_ISL_425996
 2020-03-30 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB396/2020
 C241T C3037T C14408T C21549T A23403G C28754T GGG28881AAC

EPI_ISL_425997
 2020-03-30 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB397/2020
 C241T C3037T C11866T C14408T A23403G C25433T

EPI_ISL_425998
 2020-03-30 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB399/2020
 

EPI_ISL_426000
 2020-03-30 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB407/2020
 C241T C3037T C14408T A23403G C25433T

EPI_ISL_426001
 2020-03-30 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB409/2020
 A2480G C2558T C5221T G11083T C14805T G26144T

EPI_ISL_426002
 2020-03-30 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB410/2020
 

EPI_ISL_426003
 2020-03-30 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB412/2020
 C241T C1059T C1076T C3037T C10582T C14408T A23403G G25563T

EPI_ISL_426005
 2020-03-30 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB420/2020
 C241T C3037T C14408T A23403G C25433T

EPI_ISL_426006
 2020-03-30 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB421/2020
 

EPI_ISL_426052
 2020-03-30 2020-04-14
 United States hCoV-19/USA/CT-UW-4344/2020
 ATTAAAGGTTTATACCTTCCCA1- A31T C36T C241T C1059T C3037T C10851T C14408T A23403G G25563T -29904AAAAAAAA

EPI_ISL_426053
 2020-03-30 2020-04-14
 United States hCoV-19/USA/CT-UW-4346/2020
 ATTAAA1- A31T AC35WT C241T C1059T C3037T C3140T T9995G C14408T C16260T A23403G G25563T C28821A -29904AAAAAAA

EPI_ISL_426054
 2020-03-30 2020-04-14
 United States hCoV-19/USA/CT-UW-4347/2020
 ATTAAAGGTTTAT1- CCCAGGTAACAAACCAA19- C36T C241T C1059T C3037T C14408T TGG21294AAA A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_426055
 2020-03-30 2020-04-14
 United States hCoV-19/USA/CT-UW-4366/2020
 ATTAAAGGTT1- A31T AAC34TTT C241T C1059T C3037T C11916T C13515T C14408T C18998T A23403G G25563T G29540A -29904AAAAAAAAAAAAAA

EPI_ISL_426056
 2020-03-30 2020-04-14
 United States hCoV-19/USA/CT-UW-4372/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C36T C241T C1059T C3037T C3768T C10851T C14408T A23403G G25563T C25584T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_426072 MT345885
 2020-03-30 2020-04-14
 United States SARS-CoV-2/human/USA/ID-UW-4427/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A31T C36T C241T T833C C1059T C3037T C14408T G18762T A23403G G25563T C27964T G29862A G29864A TG29867AA C29870A -29904AAAAAAAAAAAAAAAAAA

EPI_ISL_426135 MT345881
 2020-03-30 2020-04-14
 United States SARS-CoV-2/human/USA/WA-UW-4404/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- AAC34TTT C241T C1059T C3037T C14408T A23403G G25563T G29553A AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_426285
 2020-03-30 2020-04-15
 Latvia hCoV-19/Latvia/05/2020
 C241T C2113T C3037T C7765T C14408T C17690T C18877T A23403G G25563T

EPI_ISL_426286
 2020-03-30 2020-04-15
 Latvia hCoV-19/Latvia/06/2020
 C241T C3037T C14408T C14786T A23403G GGG28881AAC

EPI_ISL_426287
 2020-03-30 2020-04-15
 Latvia hCoV-19/Latvia/07/2020
 C241T C3037T G7042T C14408T C14786T A23403G GGG28881AAC

EPI_ISL_426288
 2020-03-30 2020-04-15
 Latvia hCoV-19/Latvia/08/2020
 C241T C3037T C14408T C15324T A23403G C28706T

EPI_ISL_426289
 2020-03-30 2020-04-15
 Latvia hCoV-19/Latvia/09/2020
 C241T C3037T C6336T C8247T C14408T C16750T A23403G A26530G

EPI_ISL_426456 MT350238
 2020-03-30 2020-04-17
 United States SARS-CoV-2/human/USA/VA-DCLS-0048/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C2416T C3037T G4523A C10712T C14408T A23403G G25563T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_426457 MT350239
 2020-03-30 2020-04-17
 United States SARS-CoV-2/human/USA/VA-DCLS-0049/2020
 ATTAAA1- G7T T25Y C241T A652T C1059T C3037T C14408T C20371A A23403G G25563T C27688T

EPI_ISL_426458 MT350240
 2020-03-30 2020-04-17
 United States SARS-CoV-2/human/USA/VA-DCLS-0050/2020
 ATTA1- C241T C2416T C3037T G4523A C10712T C14408T A23403G G25563T

EPI_ISL_426469 MT350251
 2020-03-30 2020-04-17
 United States SARS-CoV-2/human/USA/VA-DCLS-0061/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T C14408T T19355Y A23403G G25563T C29870A

EPI_ISL_426560
 2020-03-30 2020-04-17
 United States hCoV-19/USA/AZ-TG273286/2020
 C241T C3037T C9534A C14408T C18877T A23403G G25563T G29742A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_427010 MT451506
 2020-03-30 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC731/2020
 C241T C313T C3037T C14408T T20064C A23403G GGG28881AAC

EPI_ISL_427013 MT451509
 2020-03-30 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC734/2020
 C8782T C17747T A17858G C18060T A24694T T28144C

EPI_ISL_427019 MT451515
 2020-03-30 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC741/2020
 C8782T C17747T A17858G C18060T A24694T T28144C

EPI_ISL_427029 MT451523
 2020-03-30 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC752/2020
 C228T G1397A G9479T A9514G G11083T G26720C T28688C T28835C G29742T

EPI_ISL_427054
 2020-03-30 2020-04-17
 Australia hCoV-19/Australia/VIC779/2020
 ATG1605- A1904G C5628T C5826T C8090T C10789T G11083T C11471T C11824T

EPI_ISL_427055 MT451544
 2020-03-30 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC780/2020
 C241T C3037T G8102T C14408T A23403G GGG28881AAC

EPI_ISL_427058 MT451547
 2020-03-30 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC783/2020
 C241T C3037T T7438C C14408T T15166C A23403G A26864G C29353T

EPI_ISL_427060 MT451549
 2020-03-30 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC785/2020
 C241T C3037T T7438C C14408T A21944T A23403G C29353T

EPI_ISL_427159 MT451636
 2020-03-30 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC931/2020
 C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_427162 MT358651
 2020-03-30 2020-04-17
 United States SARS-CoV-2/human/USA/CT-UW-4238/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C36T C241T C1059T C3037T C6361T C10632T C14408T C16260T A23403G G25563T C28821A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_427165 MT358673
 2020-03-30 2020-04-17
 United States SARS-CoV-2/human/USA/CT-UW-4341/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C241T C1059T C3037T C6026T C14225B C14408T C19554T A23403G G25563T T27098G C28836T

EPI_ISL_427169 MT358652
 2020-03-30 2020-04-17
 United States SARS-CoV-2/human/USA/ID-UW-4239/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_427170 MT358655
 2020-03-30 2020-04-17
 United States SARS-CoV-2/human/USA/ID-UW-4266/2020
 ATTAAAGGTTTATACCTTCCCAGG1- AC35WT C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_427262 MT358667
 2020-03-30 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-4324/2020
 ATTAAAG1- A31T AAC34TTT C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_427266 MT358671
 2020-03-30 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-4335/2020
 ATTAAAGG1- AAC34TTT G2840A G5572T C8782T C17747T A17858G C18060T A26045G T27838A T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_427268 MT358672
 2020-03-30 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-4340/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A31T AAC34WWT C241T C1059T C3037T T5165C C6040T T6779A C14408T A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_427629
 2020-03-30 2020-04-19
 United States hCoV-19/USA/NY-NYUMC229/2020
 C241T C1059T C1594T C3037T C10015T C11916T C14408T C18744T C18998T A23403G G25563T G29540A

EPI_ISL_428366
 2020-03-30 2020-04-20
 France hCoV-19/France/HF4220/2020
 C241T C1059T C3037T C6541T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_428853
 2020-03-30 2020-04-22
 Italy hCoV-19/Italy/FVG-ICGEB_S14/2020
 -2AA C241T C3037T C14408T A23403G G29009A A29891T AAAAAAAA29893GCCGGGCG A29903GTGGCG

EPI_ISL_428854
 2020-03-30 2020-04-22
 Italy hCoV-19/Italy/FVG-ICGEB_S18/2020
 C241T C3037T C14408T A23403G G29009A AAAA29900-

EPI_ISL_428914
 2020-03-30 2020-04-22
 Russia hCoV-19/Russia/Buryatia-87104/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_428919
 2020-03-30 2020-04-22
 Russia hCoV-19/Russia/Buryatia-87106/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_428920
 2020-03-30 2020-04-22
 Russia hCoV-19/Russia/Buryatia-87105/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_428922
 2020-03-30 2020-04-22
 Russia hCoV-19/Russia/Sverdlovsk-86704/2020
 C241T C3037T C14408T C20762T A23403G GGG28881AAC

EPI_ISL_428928
 2020-03-30 2020-04-22
 Poland hCoV-19/Poland/PL_P5/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T G4162T C14408T A23403G G25429T AGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29827-

EPI_ISL_429602 MT375432
 2020-03-30 2020-04-23
 United States SARS-CoV-2/human/USA/WA-UW-4564/2020
 ATTAAAG1- GTT8ACA C241T C1059T C3037T C14408T A23403G G25563T G28541T G29553A

EPI_ISL_429603 MT375433
 2020-03-30 2020-04-23
 United States SARS-CoV-2/human/USA/WA-UW-4565/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C36T C241T C1059T C3037T G4975T C14408T A23403G G25523T G25563T T27869C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_429884
 2020-03-30 2020-04-24
 Taiwan hCoV-19/Taiwan/284/2020
 C6312A G11083T C11941T C13517T C13730T C23929T G27915A C28311T AAAAAAAAAAAA29892-

EPI_ISL_429971 MT415896
 2020-03-30 2020-04-24
 United States SARS-CoV-2/human/USA/VA-DCLS-0071/2020
 ATTAA1- T490A C3177T C5339T C6040T C8782T G12478A T18736C C24034T T26729C G28077C T28144C C28896G A29700G GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_429978
 2020-03-30 2020-04-24
 United States hCoV-19/USA/VA-DCLS-0079/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- A38G C241T C2416T C3037T G4523A C10712T C14408T ATCCATTTTTGGGTGTTTATT21975- A23403G G25563T G29868A C29870A

EPI_ISL_429983 MT415906
 2020-03-30 2020-04-24
 United States SARS-CoV-2/human/USA/VA-DCLS-0086/2020
 C241T C274A C2416T C3037T G4523A C10712T C14408T A23403G G25563T

EPI_ISL_430000 MT811552
 2020-03-30 2020-04-24
 Jordan SARS-CoV-2/human/JOR/SEARCH-0042-JOR/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- A7479G -11075TTT G11083T C14805T T17247C C25572T G26144T C28887T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_430009 MT811560
 2020-03-30 2020-04-24
 Jordan SARS-CoV-2/human/JOR/SEARCH-0052-JOR/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A23403G GGG28881AAC CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_430012 MT811562
 2020-03-30 2020-04-24
 Jordan SARS-CoV-2/human/JOR/SEARCH-0054-JOR/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A23403G GGG28881AAC CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_430115 MT627628
 2020-03-30 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S261/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_430326
 2020-03-30 2020-04-26
 United States hCoV-19/USA/NY-NYUMC299/2020
 C241T C1059T C3037T T9070C C14408T G18170A A23403G G25563T C28435T

EPI_ISL_430327
 2020-03-30 2020-04-26
 United States hCoV-19/USA/NY-NYUMC300/2020
 G10754A G11083T C14805T T17247C G26144T

EPI_ISL_430328
 2020-03-30 2020-04-26
 United States hCoV-19/USA/NY-NYUMC301/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_430329
 2020-03-30 2020-04-26
 United States hCoV-19/USA/NY-NYUMC302/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_430330
 2020-03-30 2020-04-26
 United States hCoV-19/USA/NY-NYUMC303/2020
 C241T G428A C1059T C3037T T9171A C12809T C14408T A17950G A23403G G25563T C26625T

EPI_ISL_430331
 2020-03-30 2020-04-26
 United States hCoV-19/USA/NY-NYUMC304/2020
 C241T C1059T A2018G C3037T C14408T T21995C A23403G G25563T

EPI_ISL_430332
 2020-03-30 2020-04-26
 United States hCoV-19/USA/NY-NYUMC305/2020
 C241T C1059T C3037T C10851T C14408T A23403G G25563T

EPI_ISL_430333
 2020-03-30 2020-04-26
 United States hCoV-19/USA/NY-NYUMC306/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_430334
 2020-03-30 2020-04-26
 United States hCoV-19/USA/NY-NYUMC307/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_430335
 2020-03-30 2020-04-26
 United States hCoV-19/USA/NY-NYUMC308/2020
 C241T C1059T C3037T C14408T A23403G G25563T C28821A

EPI_ISL_430336
 2020-03-30 2020-04-26
 United States hCoV-19/USA/NY-NYUMC309/2020
 C241T C1059T C3037T C11747T C14408T C16260T A23403G G25563T C28821A

EPI_ISL_430337
 2020-03-30 2020-04-26
 United States hCoV-19/USA/NY-NYUMC310/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_430338
 2020-03-30 2020-04-26
 United States hCoV-19/USA/NY-NYUMC311/2020
 C21T C241T C1059T C3037T C14408T A21562- A23403G G25563T C25587T

EPI_ISL_430339
 2020-03-30 2020-04-26
 United States hCoV-19/USA/NY-NYUMC312/2020
 C3037T C14408T

EPI_ISL_430340
 2020-03-30 2020-04-26
 United States hCoV-19/USA/NY-NYUMC313/2020
 C241T C3037T C14408T G17197A C18877T A23403G C23679T G25563T

EPI_ISL_430341
 2020-03-30 2020-04-26
 United States hCoV-19/USA/NY-NYUMC314/2020
 C241T C1059T C2880T C3037T C14408T T19149C A23403G G25563T

EPI_ISL_430342
 2020-03-30 2020-04-26
 United States hCoV-19/USA/NY-NYUMC315/2020
 C241T C1059T C3037T G11966T C13005T C14408T A23403G G25563T

EPI_ISL_430343
 2020-03-30 2020-04-26
 United States hCoV-19/USA/NY-NYUMC316/2020
 C241T C3037T C7644T C14408T C18877T A23403G G25563T

EPI_ISL_430344
 2020-03-30 2020-04-26
 United States hCoV-19/USA/NY-NYUMC317/2020
 C241T C3037T C14408T A23403G G25563T

EPI_ISL_430345
 2020-03-30 2020-04-26
 United States hCoV-19/USA/NY-NYUMC318/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_430346
 2020-03-30 2020-04-26
 United States hCoV-19/USA/NY-NYUMC319/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_430347
 2020-03-30 2020-04-26
 United States hCoV-19/USA/NY-NYUMC320/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_430348
 2020-03-30 2020-04-26
 United States hCoV-19/USA/NY-NYUMC321/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_430349
 2020-03-30 2020-04-26
 United States hCoV-19/USA/NY-NYUMC322/2020
 C241T C1059T C3037T C11747T C14408T C16260T A23403G G25563T C28821A

EPI_ISL_430543 MT451667
 2020-03-30 2020-04-27
 Australia SARS-CoV-2/human/AUS/VIC982/2020
 C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T

EPI_ISL_430545 MT451668
 2020-03-30 2020-04-27
 Australia SARS-CoV-2/human/AUS/VIC983/2020
 C241T C3037T T7438C C14408T A23403G C29353T

EPI_ISL_430799
 2020-03-30 2020-04-27
 Argentina hCoV-19/Argentina/PAIS_A007/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATC1- C241T C3037T C14408T A20268G A23403G TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_430800
 2020-03-30 2020-04-27
 Argentina hCoV-19/Argentina/PAIS_A008/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATC1- C241T C3037T C14408T A20268G A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_430940 MT412297
 2020-03-30 2020-04-28
 United States SARS-CoV-2/human/USA/ID-UW-4255/2020
 ATTAAAGG1- TT9CC A31T AAC34TTT C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T G29868A C29870A

EPI_ISL_430943 MT412300
 2020-03-30 2020-04-28
 United States SARS-CoV-2/human/USA/WA-UW-4338/2020
 ATTAAA1- AAC34TTT C241T C1059T C1514T C3037T C14408T A23403G G25563T G29553A C29870A

EPI_ISL_430944 MT412301
 2020-03-30 2020-04-28
 United States SARS-CoV-2/human/USA/CT-UW-4343/2020
 ATTAAAGGTTTATACC1- C36T C241T AAGTCATTT686- C1059T G2808A C3037T G3145T C14408T A23403G G25563T A26433G G29864A TG29867AA C29870A

EPI_ISL_430945 MT412302
 2020-03-30 2020-04-28
 United States SARS-CoV-2/human/USA/CT-UW-4345/2020
 ATTAAAGGTTTATAC1- C241T C3037T C14408T A23403G T27560C GGG28881AAC G29864A TG29867AA C29870A -29904AAAAAAAAAAAAAA

EPI_ISL_430946 MT412303
 2020-03-30 2020-04-28
 United States SARS-CoV-2/human/USA/CT-UW-4348/2020
 ATTAAAGGTTT1- G23A C241T C3037T C13517T C14408T A23403G C25350T G29864A TG29867AA C29870A -29904AAAAAAAAAAAAAAAAAA

EPI_ISL_432180
 2020-03-30 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-27A9C/2020
 ATT1- C241T C3037T C9286Y C14408T A15709G A20268G A23403G C28854T A29865R

EPI_ISL_432198
 2020-03-30 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-27ABA/2020
 C241T C1059T C1912T C3037T C14408T G15380T C17012T A23403G G25563T C29514T

EPI_ISL_432211
 2020-03-30 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-2764D/2020
 C241T C3037T T5465C C14408T G21624T A23403G G24102R GGG28881AAC

EPI_ISL_432222
 2020-03-30 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-27B3F/2020
 A1- C241T C3037T T3100G G10097A C14408T A23403G C23731T G25947T GGG28881AAC

EPI_ISL_432227
 2020-03-30 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-27AAB/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_432235
 2020-03-30 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-272FE/2020
 C241T C3037T C6990T C14408T A23403G C29200T AAAAAAAAAAAAA29891-

EPI_ISL_432250
 2020-03-30 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-2722B/2020
 ATTAAAGGTTTATACCTTC1- A2345T A7479G G11083T C14805T T17247C C25572T G26144T C28887T

EPI_ISL_432255
 2020-03-30 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-27531/2020
 A1- C241T C3037T C14408T C21110Y A23403G GGG28881AAC

EPI_ISL_432257
 2020-03-30 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-2762F/2020
 ATTAA1- G1589R ATG1605- T4949C G11831A C16887T G18651A

EPI_ISL_432262
 2020-03-30 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-2720D/2020
 AT1- A1515G C3903T C9223T G11083T T13064C C14805T T17247C G26144T

EPI_ISL_432266
 2020-03-30 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-27513/2020
 ATTA1- C241T C3037T G11083T C14408T A23403G A25575C

EPI_ISL_432290
 2020-03-30 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-2730A/2020
 C241T C3037T C14408T C22326Y A23403G G24626T G28857T

EPI_ISL_432293
 2020-03-30 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-27504/2020
 ATTA1- C241T C3037T G11083T C14408T A23403G A25575C

EPI_ISL_432301
 2020-03-30 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-27407/2020
 G1148T A1515G C9223T G11083T C14805T T17247C G26144T

EPI_ISL_432481
 2020-03-30 2020-04-29
 United Kingdom hCoV-19/England/SHEF-CA0B7/2020
 C241T C3037T C14408T A23403G

EPI_ISL_432487
 2020-03-30 2020-04-29
 United Kingdom hCoV-19/England/SHEF-CA1F0/2020
 C2558T G11083T C14805T A24340T G26144T C29167T

EPI_ISL_432517
 2020-03-30 2020-04-29
 United Kingdom hCoV-19/England/SHEF-CBECB/2020
 C241T C3037T C14408T C14786T T15648C A23403G GGG28881AAC

EPI_ISL_432551
 2020-03-30 2020-04-29
 United Kingdom hCoV-19/England/SHEF-CD97D/2020
 G11083T C14805T G26144T

EPI_ISL_432601
 2020-03-30 2020-04-29
 United Kingdom hCoV-19/England/SHEF-CFE03/2020
 C241T C3037T C14408T A23403G C25350T

EPI_ISL_432644
 2020-03-30 2020-04-29
 United Kingdom hCoV-19/England/SHEF-D1F56/2020
 C241T C3037T C14408T C21614T A23403G

EPI_ISL_432720
 2020-03-30 2020-04-29
 United Kingdom hCoV-19/England/SHEF-C0FB4/2020
 C241T C3037T T9124C C14408T C16101T A18616G A23403G GGG28881AAC

EPI_ISL_432734
 2020-03-30 2020-04-29
 United Kingdom hCoV-19/England/SHEF-C1B64/2020
 C241T C3037T C14408T C18713T A23403G GGG28881AAC

EPI_ISL_432746
 2020-03-30 2020-04-29
 United Kingdom hCoV-19/England/SHEF-C2626/2020
 G11083T C14805T G26144T

EPI_ISL_432777
 2020-03-30 2020-04-29
 United Kingdom hCoV-19/England/SHEF-C384D/2020
 C241T C3037T C14408T G15780T A23403G

EPI_ISL_432788
 2020-03-30 2020-04-29
 United Kingdom hCoV-19/England/SHEF-C4493/2020
 C241T C1419T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_432813
 2020-03-30 2020-04-29
 United Kingdom hCoV-19/England/SHEF-C5DD3/2020
 C241T C3037T C14408T A20268G A23403G C25791T C28854T

EPI_ISL_432828
 2020-03-30 2020-04-29
 United Kingdom hCoV-19/England/SHEF-C6C11/2020
 ATG1605- G27703T C27752T

EPI_ISL_432831
 2020-03-30 2020-04-29
 United Kingdom hCoV-19/England/SHEF-C6EA2/2020
 ATG1605- C4586T C18486T G25726T G29032A

EPI_ISL_432867
 2020-03-30 2020-04-29
 United Kingdom hCoV-19/England/SHEF-C8532/2020
 C241T C1469T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_432942
 2020-03-30 2020-04-29
 United Kingdom hCoV-19/England/NOTT-10EF13/2020
 C106T A2480G C2558T G11083T C14805T A21405G G26144T

EPI_ISL_432951
 2020-03-30 2020-04-29
 United Kingdom hCoV-19/England/NOTT-10EFB9/2020
 G3052A C6027T G11083T C14805T T18771C G25352T G26144T

EPI_ISL_432954
 2020-03-30 2020-04-29
 United Kingdom hCoV-19/England/NOTT-10EFF5/2020
 C241T C3037T C14408T A23403G C25350T G25445T

EPI_ISL_432955
 2020-03-30 2020-04-29
 United Kingdom hCoV-19/England/NOTT-10F000/2020
 C241T C3037T C10078T C14408T A23403G G27281T GGG28881AAC C29284T G29405A

EPI_ISL_432956
 2020-03-30 2020-04-29
 United Kingdom hCoV-19/England/NOTT-10F01F/2020
 C241T C3037T C7834T C14408T A23403G GGG28881AAC

EPI_ISL_432961
 2020-03-30 2020-04-29
 United Kingdom hCoV-19/England/NOTT-10F0B5/2020
 C241T C3037T C6541T C14408T C22009T A23403G C27046T C27595T GGG28881AAC

EPI_ISL_433499
 2020-03-30 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR1022/2020
 C241T C3037T C14408T C15324T A23403G

EPI_ISL_433522
 2020-03-30 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR1204/2020
 ATG1605- C12488T C12710T C28854T

EPI_ISL_433538
 2020-03-30 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR1312/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G17278T C20844T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_434081 MT633011
 2020-03-30 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S321/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434152 MT632933
 2020-03-30 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S392/2020
 C241T C1059T C3037T C14408T A23403G G25563T G29553A

EPI_ISL_434154 MT632979
 2020-03-30 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S394/2020
 G1401A C8782T T13438C C17747T A17858G C18060T T28144C

EPI_ISL_434155 MT632815
 2020-03-30 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S395/2020
 C241T C1059T C3037T A12148T C13536T C14408T C21635T A23403G G25563T G29553A

EPI_ISL_434158 MT632775
 2020-03-30 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S398/2020
 C241T C1059T C3037T G4975T C14408T G15384T A23403G G25523T G25563T T27869C T29194C

EPI_ISL_434172 MT632925
 2020-03-30 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S412/2020
 C8782T C12076T C17747T A17858G C18060T T28144C

EPI_ISL_434195 MT632812
 2020-03-30 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S435/2020
 C241T C1059T C3037T G4975T C14408T A23403G G25523T G25563T T27869C

EPI_ISL_434213 MT632861
 2020-03-30 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S453/2020
 C241T C2940T C3037T C14408T C14786T A23403G GGG28881AAC

EPI_ISL_434268 MT632871
 2020-03-30 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S508/2020
 C241T C3037T C14408T C16376T C18877T A23403G G25563T C27874T

EPI_ISL_434269 MT632982
 2020-03-30 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S509/2020
 C8782T C17747T A17858G C18060T C25886T T28144C

EPI_ISL_434309 MT632907
 2020-03-30 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S549/2020
 C241T C1059T C3037T C14408T C16260T A23403G G25563T C28821A

EPI_ISL_434315 MT632900
 2020-03-30 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S555/2020
 C8782T C17747T A17858G C18060T C18264T C24919T T28144C

EPI_ISL_434321 MT632969
 2020-03-30 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S561/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_434331 MT633022
 2020-03-30 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S571/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_434338 MT632921
 2020-03-30 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S578/2020
 C3737T C8782T C14898T C15960T C17747T A17858G C18060T T28144C

EPI_ISL_434341 MT632851
 2020-03-30 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S581/2020
 C241T C1059T C3037T G7560A C14408T G19999T G21452T A23403G G25563T

EPI_ISL_434656
 2020-03-30 2020-04-30
 Sweden hCoV-19/Sweden/20-06503/2020
 C66T C241T C3037T C12439T C14408T C14937T A23403G

EPI_ISL_434955
 2020-03-30 2020-05-01
 United States hCoV-19/USA/TX-HMH363/2020
 C241T C1059T C3037T C9962T C10319T C14408T C20698T A23403G G25563T C27964T

EPI_ISL_434956
 2020-03-30 2020-05-01
 United States hCoV-19/USA/TX-HMH364/2020
 C241T C1059T C3037T C10188T C10252T C14408T A23403G T24982C G25563T C27964T

EPI_ISL_434957
 2020-03-30 2020-05-01
 United States hCoV-19/USA/TX-HMH365/2020
 C241T C3037T A10840G C13138T C14408T G15243T A23403G

EPI_ISL_434963
 2020-03-30 2020-05-01
 United States hCoV-19/USA/TX-HMH372/2020
 C241T C3037T A6616G G14118T C14408T G15243T A23403G

EPI_ISL_434965
 2020-03-30 2020-05-01
 United States hCoV-19/USA/TX-HMH376/2020
 C241T C1059T C3037T C10319T C14408T G22344T A23403G G25563T C27964T

EPI_ISL_434967
 2020-03-30 2020-05-01
 United States hCoV-19/USA/TX-HMH379/2020
 T490A C3177T C6040T C8782T C8950T G12478A C13019T T18736C T19713C C24034T C26151T T26729C G28077C T28144C C28896G C29451T A29700G

EPI_ISL_434969
 2020-03-30 2020-05-01
 United States hCoV-19/USA/TX-HMH381/2020
 T490A G3013A C3177T C6040T C8782T C8950T G12478A T18736C C24034T T26729C G28077C T28144C A28155G C28896G C29451T A29700G

EPI_ISL_434973
 2020-03-30 2020-05-01
 United States hCoV-19/USA/TX-HMH385/2020
 C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T

EPI_ISL_434977
 2020-03-30 2020-05-01
 United States hCoV-19/USA/TX-HMH390/2020
 C241T C1059T C3037T C14408T A18082G A23403G G25563T C26681T C27964T

EPI_ISL_434989
 2020-03-30 2020-05-01
 United States hCoV-19/USA/TX-HMH402/2020
 C241T C1059T C3037T C14408T C16260T A23403G G25563T C28821A

EPI_ISL_434996
 2020-03-30 2020-05-01
 United States hCoV-19/USA/TX-HMH410/2020
 C241T C1059T C3037T C10188T C14408T A23403G T24982C G25563T C27964T

EPI_ISL_435111
 2020-03-30 2020-05-02
 India hCoV-19/India/NCDC-02415/2020
 C8782T T9477A C14805T A23118M G25979T T28144C C28657T C28863T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_435283
 2020-03-30 2020-05-04
 Indonesia hCoV-19/Indonesia/JKT-EIJK2444/2020
 G11083T C21789T T29685A -29904AAAAAAAAAAAAAAAAAAAA

EPI_ISL_435412
 2020-03-30 2020-05-04
 Hungary hCoV-19/Hungary/SRC-00792/2020
 C241T C337T C1059T C3037T C12049T C14408T A23403G G25563T G29422T

EPI_ISL_435413
 2020-03-30 2020-05-04
 Hungary hCoV-19/Hungary/SRC-00817/2020
 C241T C3037T C4002T G10097A C13536T C14408T C19718T A23403G GGG28881AAC

EPI_ISL_435414
 2020-03-30 2020-05-04
 Hungary hCoV-19/Hungary/SRC-00827/2020
 C241T A964G C1059T C3037T C14408T A23403G G25563T

EPI_ISL_435415
 2020-03-30 2020-05-04
 Hungary hCoV-19/Hungary/SRC-00836/2020
 C241T C313T C3037T C4921T C14408T A23403G G25563T T27829C

EPI_ISL_435417
 2020-03-30 2020-05-04
 Hungary hCoV-19/Hungary/SRC-00777/2020
 C241T C3037T C14408T T19839C C21846T A23403G GGG28881AAC

EPI_ISL_435453
 2020-03-30 2020-05-05
 United States hCoV-19/USA/LA-SR0150/2020
 C40T C241T C1059T C3037T C14408T G16622A A23403G G25563T C27964T

EPI_ISL_435475
 2020-03-30 2020-05-05
 United States hCoV-19/USA/NY-NYUMC408/2020
 C241T C3037T A4528G C14408T C18877T C19032T C19049T A23403G G25563T

EPI_ISL_435476
 2020-03-30 2020-05-05
 United States hCoV-19/USA/NY-NYUMC409/2020
 C241T C1059T C3037T A8031G G11083T C11916T G13159A C14408T A23403G G25563T

EPI_ISL_435477
 2020-03-30 2020-05-05
 United States hCoV-19/USA/NY-NYUMC410/2020
 C241T C1059T T1984C C3037T C10851T C14408T C21575T A23403G G25563T G25593T GAT28280CTA C29738T

EPI_ISL_435478
 2020-03-30 2020-05-05
 United States hCoV-19/USA/NY-NYUMC411/2020
 C241T C3037T C5239T C14408T T15264C A23403G

EPI_ISL_435479
 2020-03-30 2020-05-05
 United States hCoV-19/USA/NY-NYUMC412/2020
 C241T C1059T C1471T C3037T C11916T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_435480
 2020-03-30 2020-05-05
 United States hCoV-19/USA/NY-NYUMC413/2020
 C241T C1059T C3037T C10889T C11916T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_435481
 2020-03-30 2020-05-05
 United States hCoV-19/USA/NY-NYUMC414/2020
 C241T C1059T C3037T G6443A C14408T A23403G G25563T G28827T

EPI_ISL_435482
 2020-03-30 2020-05-05
 United States hCoV-19/USA/NY-NYUMC415/2020
 C241T C1059T C3037T C4246T A9562G C14408T C16626T A23403G G24712A G25563T C27911T G29830A

EPI_ISL_435483
 2020-03-30 2020-05-05
 United States hCoV-19/USA/NJ-NYUMC416/2020
 C241T C1059T C3037T C11916T C14408T G20002T A23403G G25563T G28376T

EPI_ISL_435484
 2020-03-30 2020-05-05
 United States hCoV-19/USA/NY-NYUMC417/2020
 C241T C1059T C3037T C14408T A14836G T22207C A23403G G25563T G25879T

EPI_ISL_435485
 2020-03-30 2020-05-05
 United States hCoV-19/USA/NY-NYUMC418/2020
 C241T C3037T G3566A C6198T C14408T C18877T A23403G G25563T

EPI_ISL_435486
 2020-03-30 2020-05-05
 United States hCoV-19/USA/NY-NYUMC419/2020
 C241T C1059T C3037T C14408T A23403G G25563T G29477T

EPI_ISL_436106
 2020-03-30 2020-05-06
 Taiwan hCoV-19/Taiwan/TSGH-21/2020
 C241T C3037T G3476A C10188T C14408T C15324T A23403G C26013T -29902CCACAAACCAAAACG

EPI_ISL_436979
 2020-03-30 2020-05-08
 Denmark hCoV-19/Denmark/ALAB-SSI-580/2020
 C241T C1059T C3037T C14408T A23403G

EPI_ISL_436980
 2020-03-30 2020-05-08
 Denmark hCoV-19/Denmark/ALAB-SSI-581/2020
 C241T C1059T C1302T C3037T C11074T C14408T A23403G G25563T

EPI_ISL_436981
 2020-03-30 2020-05-08
 Denmark hCoV-19/Denmark/ALAB-SSI-582/2020
 C241T C3037T C13862T C14408T A23403G C28836T G28954A

EPI_ISL_436982
 2020-03-30 2020-05-08
 Denmark hCoV-19/Denmark/ALAB-SSI-586/2020
 C241T C1059T C1288T C3037T C13366T C14408T C16726T T20229C A23403G G25563T

EPI_ISL_437272
 2020-03-30 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0077/2020
 A2480G C2558T T2698C G11083T C14805T G26144T A27151T C29750T

EPI_ISL_437275
 2020-03-30 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0081/2020
 G1440A G2891A C27143T

EPI_ISL_437276
 2020-03-30 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0082/2020
 C241T C3037T C14408T A23403G

EPI_ISL_437590
 2020-03-30 2020-05-11
 United States hCoV-19/USA/CA-SR0190/2020
 C241T C3037T G10360A C14408T A23403G G24757T A27938G GGG28881AAC

EPI_ISL_437669
 2020-03-30 2020-05-11
 Denmark hCoV-19/Denmark/ALAB-SSI-783/2020
 C241T C3037T C7834T C14408T G20580T A23403G

EPI_ISL_437670
 2020-03-30 2020-05-11
 Denmark hCoV-19/Denmark/ALAB-SSI-786/2020
 C241T C3037T C7834T C14408T A23403G C27335T

EPI_ISL_437679
 2020-03-30 2020-05-11
 Denmark hCoV-19/Denmark/ALAB-SSI-864/2020
 C241T C3037T C7834T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_437825 MT461624
 2020-03-30 2020-05-11
 United States SARS-CoV-2/human/USA/CT-UW-4237/2020
 ATTAAAGGTT1- TA11KW C19V C241T C1059T C3037T C14408T A23403G G25563T TG29867AA C29870A

EPI_ISL_437826 MT461625
 2020-03-30 2020-05-11
 United States SARS-CoV-2/human/USA/ID-UW-4254/2020
 ATTAAAGGT1- TA11GT TCCC18GGGA C241T T833C C1059T C3037T C6195T C14408T C15720T G21641T A23403G G25563T C27964T -29904AAAAAAAAAAAA

EPI_ISL_437828 MT461628
 2020-03-30 2020-05-11
 United States SARS-CoV-2/human/USA/ID-UW-4308/2020
 A1G AAA4- TA11GT TCC18GGG C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T -29904AAAAAAAAAAAAAAAAAA

EPI_ISL_437935
 2020-03-30 2020-05-12
 Austria hCoV-19/Austria/CeMM0052/2020
 C241T C1059T C3037T C14408T A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_437936
 2020-03-30 2020-05-12
 Austria hCoV-19/Austria/CeMM0053/2020
 C241T C1059T T1921K C3037T C14408T G15380T A16076M G21938K T22521K A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_438125
 2020-03-30 2020-05-12
 Austria hCoV-19/Austria/CeMM0362/2020
 C241T C3037T C12073T C14408T A23403G C24642T C27046T G28395T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAA29882-

EPI_ISL_438333
 2020-03-30 2020-05-12
 United Kingdom hCoV-19/England/CAMB-76269/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1514T A2480G C2558T G11083T C14805T C20759Y T25202K G26144T G29140T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_438441
 2020-03-30 2020-05-12
 United Kingdom hCoV-19/England/CAMB-7624B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T T25202K GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_438500
 2020-03-30 2020-05-12
 United Kingdom hCoV-19/England/CAMB-71DE5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G T25202K GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_438543
 2020-03-30 2020-05-12
 United Kingdom hCoV-19/England/CAMB-776F3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11083K C14408T G16852T A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_438776
 2020-03-30 2020-05-12
 United Kingdom hCoV-19/Scotland/CVR1221/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6371G C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_439534
 2020-03-30 2020-05-12
 United Kingdom hCoV-19/England/CAMB-71BDC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G T25202K GGG28881AAC AAAAAAAAAAAAAA29890-

EPI_ISL_439876
 2020-03-30 2020-05-12
 United Kingdom hCoV-19/England/CAMB-71D12/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C392T C3037T C14408T C19488T A23403G T25202K GGG28881AAC AAAAAAAAAAA29893-

EPI_ISL_439947
 2020-03-30 2020-05-12
 United Kingdom hCoV-19/England/CAMB-71CBB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T GA4207TC G11842T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAA29882-

EPI_ISL_442013
 2020-03-30 2020-05-12
 United Kingdom hCoV-19/England/SHEF-C7991/2020
 C241T C3037T C14408T C18713T A23403G GGG28881AAC

EPI_ISL_443185
 2020-03-30 2020-05-12
 United States hCoV-19/USA/OR-UW-4409/2020
 ATTAAAG1- AAC34TTT C241T C1059T C3037T C14408T A23403G G25563T A27894G C29870A

EPI_ISL_444616
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC499/2020
 C241T C1059T C3037T A6273G C14408T A23403G G25563T

EPI_ISL_444617
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC500/2020
 C241T C1059T ATG1431- C3037T C6730T C14408T A23403G G25563T G29140T

EPI_ISL_444618
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC501/2020
 C241T C1059T C1191T C3037T C14408T A23403G G25563T

EPI_ISL_444619
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC502/2020
 C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T C25571T G29540A

EPI_ISL_444620
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC503/2020
 C241T C1059T C3037T C14408T G15168A C19145T A23403G G25563T

EPI_ISL_444621
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC504/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_444622
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC505/2020
 C241T C1059T C3037T G6352A C14408T A23403G C25463T G25563T

EPI_ISL_444623
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC506/2020
 C241T C1059T C3037T C8118T C11916T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_444624
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC507/2020
 C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_444625
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC508/2020
 C241T C3037T C14408T C18877T A23403G G25563T G25726T

EPI_ISL_444626
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC509/2020
 C241T C3037T C14408T T15348A A23403G T27299C GGG28881AAC T29148C

EPI_ISL_444627
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC510/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_444628
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC511/2020
 C241T C1059T C3037T C11916T C14408T C19367T A23403G G25563T

EPI_ISL_444629
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC512/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_444630
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC513/2020
 C241T C1059T C3037T C4878T C8956T C14408T A23403G G25563T

EPI_ISL_444631
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC514/2020
 C241T G2231T C3037T C14408T A23403G A25505C GGG28881AAC

EPI_ISL_444632
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC515/2020
 C8782T T10771C T13147C C17747T A17858G C18060T T28144C

EPI_ISL_444633
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC516/2020
 C241T C1059T C3037T C14408T A23403G C23683T G25563T

EPI_ISL_444634
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC517/2020
 C241T C1059T C3037T C5907T C11916T C14408T A23403G G25563T

EPI_ISL_444635
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC518/2020
 C241T C1059T C3037T C11514T C14408T A23403G G25563T A28841G C29421T

EPI_ISL_444636
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC519/2020
 C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G28878T G29540A

EPI_ISL_444637
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC520/2020
 T8704C C8782T T10771C C17747T A17858G C18060T T28144C A28483G

EPI_ISL_444638
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC521/2020
 C241T C1059T C3037T G4720A C14408T A23403G G25563T C28253T

EPI_ISL_444639
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC522/2020
 C241T C1059T C3037T C14408T A23403G G25563T T26094C

EPI_ISL_444640
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC523/2020
 C241T C1059T C3037T C11833T C14408T A23403G G25563T T28516C

EPI_ISL_444641
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC524/2020
 C241T C1059T C3037T C8660T C14408T A23403G G25563T

EPI_ISL_444642
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC525/2020
 C241T C1059T C3037T C14408T C21855T A23403G G25563T T28215G T28688C A29282G

EPI_ISL_444650
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC533/2020
 C241T C1059T C3037T C14408T A23403G G25563T G25617A T27499C

EPI_ISL_444652
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC535/2020
 C2676T C8782T A22606T G24410C T28144C G28878A G29742A

EPI_ISL_444653
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC536/2020
 C241T C1059T C3037T C14408T G17602A A23403G G25563T T29765C

EPI_ISL_444654
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC537/2020
 C241T C1059T C3037T C14408T C16260T A23403G G25563T C28821A

EPI_ISL_444655
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NJ-NYUMC538/2020
 C241T C1059T C3037T C10851T C14408T G20170T A23403G G25526T G25563T

EPI_ISL_444656
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC539/2020
 C241T C3037T C14408T A23403G

EPI_ISL_444657
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC540/2020
 C241T C1059T C3037T C14408T A23403G G25563T G25784T

EPI_ISL_444658
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC541/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_444659
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC542/2020
 C241T C1059T C3037T T12283C C14408T C16260T A23403G G25563T C28821A

EPI_ISL_444660
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC543/2020
 C241T C1059T C3037T C11916T C14408T A23403G G25563T

EPI_ISL_444661
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC544/2020
 C241T C1059T C1917T C3037T C8655T C14408T C16393T A23403G G25563T G28899A

EPI_ISL_444664
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC547/2020
 C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29440A G29540A

EPI_ISL_444665
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC548/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_444666
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC549/2020
 C241T C1059T C3037T C12488T C14408T A23403G G25563T C29421T G29425A

EPI_ISL_444667
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC550/2020
 C241T C1059T C3037T C11003T C11919T C14408T C21575T A23403G G25563T

EPI_ISL_444668
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC551/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_444670
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NJ-NYUMC553/2020
 C241T C1059T C3037T C10851T C14408T G20170T A23403G G25526T G25563T

EPI_ISL_444671
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC554/2020
 C241T C1059T C3037T C14408T C16887T A20755C A23403G G25563T

EPI_ISL_444675
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC558/2020
 C241T C1059T C3037T C10626T C11916T C14408T C19718T A23403G G25563T

EPI_ISL_444678
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC561/2020
 C241T C1059T C3037T C12756T C14408T A23403G G25563T

EPI_ISL_444679
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC562/2020
 C157T C241T C1059T C3037T C14408T G17331T A23403G C25463T G25563T

EPI_ISL_444680
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC563/2020
 C241T C3037T C14408T A20268G G20893T A23403G C24863T

EPI_ISL_444681
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC564/2020
 C241T C1059T C3037T C14408T C17678T C19145T A23403G C25463T G25563T

EPI_ISL_444682
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC565/2020
 T490A C3177T C6040T C8782T G12478A T18736C C24034T C24442T T26729C G28077C T28144C C28896G A29700G

EPI_ISL_444683
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC566/2020
 C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T C28863T G29540A

EPI_ISL_444684
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC567/2020
 C241T C1059T C3037T C11916T C14408T A23403G G25563T

EPI_ISL_444685
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC568/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_444686
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC569/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_444687
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC570/2020
 C241T C1059T C3037T C6926T C11916T C14408T C17678T C18998T A23403G G25563T G29540A

EPI_ISL_444688
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC571/2020
 C241T C920T C1059T C3037T C14408T A23403G G25563T C29675T

EPI_ISL_444690
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC573/2020
 C241T C1059T C3037T C10851T C14408T A23403G G25563T

EPI_ISL_444691
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC574/2020
 C241T C1059T C3037T C14408T A23403G G25563T C29541T

EPI_ISL_444692
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC575/2020
 C241T C3037T C14408T A23403G G25644T GGG28881AAC

EPI_ISL_444693
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC576/2020
 C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_444694
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC577/2020
 C241T C1059T G1181T C3037T C11916T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_444695
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC578/2020
 C241T C1059T C3037T G3729A C11916T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_444696
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC579/2020
 C241T C1059T C3037T C11674T C14408T A23403G G25563T

EPI_ISL_444697
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC580/2020
 C241T C3037T C14408T A23403G C26892T GGG28881AAC

EPI_ISL_444698
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC581/2020
 C241T C1059T C3037T C14408T C20429T A23403G C25463T G25563T

EPI_ISL_444699
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC582/2020
 C241T C1059T C3037T C10319T C14408T C19170T A23403G G25563T C27964T

EPI_ISL_444700
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC583/2020
 C241T C1059T C3037T C5310T C14408T A23403G G25563T

EPI_ISL_444701
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC584/2020
 C241T C1059T C3037T A7240G C14408T A23403G G25563T

EPI_ISL_444702
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC585/2020
 C241T C1059T C1314T C3037T C14408T G21941T A23403G G25563T T28823C

EPI_ISL_444703
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC586/2020
 G199T C241T C1059T C3037T G11417T C14408T A23403G G25563T A29275G

EPI_ISL_444704
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC587/2020
 C241T C1059T C3037T C14408T C22712T A23403G G25563T C26873T

EPI_ISL_444705
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC588/2020
 C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_444765
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC648/2020
 C241T C1059T C3037T G3251T C14408T A23403G G25563T

EPI_ISL_444903
 2020-03-30 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-782/2020
 C241T C3037T C7834T C14408T A23403G

EPI_ISL_444904
 2020-03-30 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-785/2020
 C241T C3037T C7834T C14408T A23403G G23868T

EPI_ISL_444905
 2020-03-30 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-787/2020
 C241T C3037T C7834T C14408T A23403G C28311T

EPI_ISL_444906
 2020-03-30 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-789/2020
 C241T C1059T C3037T TGC9855- C14408T G15672T C15842A C19903T A23403G G25563T

EPI_ISL_444910
 2020-03-30 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-795/2020
 C241T C3037T C7834T C14408T A23403G

EPI_ISL_444911
 2020-03-30 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-797/2020
 C241T C1059T C3037T T8788C C14408T A23403G G25563T G26951A

EPI_ISL_444918
 2020-03-30 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-809/2020
 C241T C3037T C7834T T9519C C14408T C18877T C19660A A23403G

EPI_ISL_444920
 2020-03-30 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-812/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T

EPI_ISL_444921
 2020-03-30 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-815/2020
 C241T C3037T C7834T C14408T A23403G

EPI_ISL_444926
 2020-03-30 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-828/2020
 C241T C1059T C3037T T8788C C14408T A23403G G25563T G26951A

EPI_ISL_444927
 2020-03-30 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-831/2020
 C241T C1059T C3037T C12781T C14408T C15842A G22103C A23403G G25563T

EPI_ISL_444928
 2020-03-30 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-832/2020
 C241T C1059T G2945T C3037T T8788C C14408T A23403G G25563T G26951A G29474T

EPI_ISL_444929
 2020-03-30 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-833/2020
 C241T C1059T C1302T C3037T C14408T A23403G G25563T

EPI_ISL_444937
 2020-03-30 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-846/2020
 C241T C3037T C7834T C14408T A23403G

EPI_ISL_444938
 2020-03-30 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-847/2020
 C241T C3037T C7834T C14408T A23403G

EPI_ISL_444939
 2020-03-30 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-848/2020
 C241T C3037T C7834T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_444940
 2020-03-30 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-849/2020
 C241T C1059T C1302T C3037T C14408T A23403G G25563T

EPI_ISL_444948
 2020-03-30 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-866/2020
 C241T C1059T C3037T C12781T C14408T C15842A A23403G A23975G G25563T

EPI_ISL_444949
 2020-03-30 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-867/2020
 C241T C1059T C3037T C12781T C14408T C15842A A23403G A23975G G25563T C25854T

EPI_ISL_444950
 2020-03-30 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-868/2020
 C241T C1059T C3037T C12781T C14408T C15842A G22103C A23403G G25563T

EPI_ISL_444952
 2020-03-30 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-876/2020
 C218T C241T C1059T C1302T C2062T C3037T G11083T C14408T G22484T A23403G G25563T

EPI_ISL_444955
 2020-03-30 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-885/2020
 C241T C3037T C14408T A20268G A23403G

EPI_ISL_444957
 2020-03-30 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-888/2020
 C241T C1059T C3037T T8788C C14408T A23403G G25563T G26951A

EPI_ISL_444961
 2020-03-30 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-894/2020
 C241T C1059T C3037T T8788C C14408T A23403G G25563T G26951A

EPI_ISL_444963
 2020-03-30 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-896/2020
 C241T C1059T C3037T C6539T C14408T A23403G G25563T

EPI_ISL_444965
 2020-03-30 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-902/2020
 C241T C1059T C1302T C3037T C7029T C14408T A23403G G25563T G27147T G28202T

EPI_ISL_444966
 2020-03-30 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-904/2020
 C241T C1059T C3037T C14408T T21976C A23403G G25563T G29254T

EPI_ISL_444967
 2020-03-30 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-905/2020
 C241T C1059T C3037T T8788C C14408T A23403G G25563T G26951A

EPI_ISL_445115
 2020-03-30 2020-05-15
 United States hCoV-19/USA/CA-SR0132/2020
 C241T C1059T C3037T C6629T C14408T C23277T A23403G G25563T

EPI_ISL_445180 MT474136
 2020-03-30 2020-05-15
 United States SARS-CoV-2/human/USA/CA-CZB-1132/2020
 AT1- C241T C1059T G1685A A2018G C3037T C14408T G17149A A23403G G25563T

EPI_ISL_445225
 2020-03-30 2020-05-15
 Sweden hCoV-19/Sweden/20-06653/2020
 C241T C1059T C3037T C14408T C21156T A23403G G24368T G25563T

EPI_ISL_445337
 2020-03-30 2020-05-15
 Chile hCoV-19/Chile/Valparaiso_5/2020
 A1GGTCAACAACACAGTTTATGATCCTTTGCAACCTGAA -4AGAATCA GGT7CAA T76W T78K C241T C1059T C3037T C6033M T10339C C14408T A23403G G25563T G29861A ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_445372
 2020-03-30 2020-05-15
 Chile hCoV-19/Chile/Punta_Arenas_17/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T C3037T C14408T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_447120
 2020-03-30 2020-05-16
 Belgium hCoV-19/Belgium/ULG-6839/2020
 C241T C3037T C14408T C15324T A23403G C25433T

EPI_ISL_447124
 2020-03-30 2020-05-16
 Belgium hCoV-19/Belgium/ULG-9536/2020
 C241T C1884T C3037T C14408T A23403G C28045G

EPI_ISL_447148
 2020-03-30 2020-05-16
 Belgium hCoV-19/Belgium/ULG-10151/2020
 C241T C3037T C5175T T11638C C14408T A23403G GGG28881AAC C29708T

EPI_ISL_447385
 2020-03-30 2020-05-17
 Israel hCoV-19/Israel/2047772/2020
 C241T C3037T C14408T C18877T A23403G G25563T AAAAAAAAAAAA29892-

EPI_ISL_447386
 2020-03-30 2020-05-17
 Israel hCoV-19/Israel/2047749/2020
 C241T C1059T C3037T C11916T C14408T C18998T A23403G A23691C G25563T G29540A AAAAAAAAAAAA29892-

EPI_ISL_447387
 2020-03-30 2020-05-17
 Israel hCoV-19/Israel/2047738/2020
 C241T C1059T C3037T G7936T C11916T A13500G C14408T C18998T A23403G G25563T G29540A AAAAAAAAAAAA29892-

EPI_ISL_447441
 2020-03-30 2020-05-17
 Israel hCoV-19/Israel/13075914/2020
 C241T C313T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_447442
 2020-03-30 2020-05-17
 Israel hCoV-19/Israel/13075882/2020
 C241T C313T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_447443
 2020-03-30 2020-05-17
 Israel hCoV-19/Israel/13075879/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C313T C3037T C14408T A23403G GGG28881AAC G29017T CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_447444
 2020-03-30 2020-05-17
 Israel hCoV-19/Israel/13075832/2020
 C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T C29013T G29540A AAAAAAAAAAAA29892-

EPI_ISL_447445
 2020-03-30 2020-05-17
 Israel hCoV-19/Israel/13075790/2020
 C241T C1059T C3037T C14408T A20755C A23403G G25563T AAAAAAAAAAAA29892-

EPI_ISL_447446
 2020-03-30 2020-05-17
 Israel hCoV-19/Israel/13075788/2020
 C241T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_447448
 2020-03-30 2020-05-17
 Israel hCoV-19/Israel/13075735/2020
 C241T C3037T C14408T A23403G G25563T AAAAAAAAAAAA29892-

EPI_ISL_447506
 2020-03-30 2020-05-17
 Spain hCoV-19/Spain/Valencia/COV000576/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C6402T C12974T C14408T A20268G A23403G G29734C AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_447556
 2020-03-30 2020-05-17
 India hCoV-19/India/CCMB_J021/2020
 ATTAAAGGTTTATACCT1- C6312A G11083T C13730T A21792T C23929T C28311T C29722T ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_447557
 2020-03-30 2020-05-17
 India hCoV-19/India/CCMB_J009/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C6312A G11083T C13730T C23929T C28311T

EPI_ISL_447558
 2020-03-30 2020-05-17
 India hCoV-19/India/CCMB_J014/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- A1381G C6312A C13730T C23929T C28311T

EPI_ISL_447620
 2020-03-30 2020-05-18
 Taiwan hCoV-19/Taiwan/NTU26/2020
 C241T C3037T C6664T G12514T C14408T A23403G GGG28881AAC G29690T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_447750
 2020-03-30 2020-05-18
 Colombia hCoV-19/Colombia/GUR-0787/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T G701T C1059T C3037T C14408T A23403G G25563T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_447752
 2020-03-30 2020-05-18
 Colombia hCoV-19/Colombia/GUR-0900/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T GGTCATGTTATG509- G521A T523G C3037T C14408T G15910T A20268G G22319T A23403G AAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29812-

EPI_ISL_450394
 2020-03-30 2020-05-21
 United States hCoV-19/USA/NY-NYUMC677/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_450396
 2020-03-30 2020-05-21
 United States hCoV-19/USA/NY-NYUMC679/2020
 C241T C1059T C3037T C10889T C11916T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_450397
 2020-03-30 2020-05-21
 United States hCoV-19/USA/NY-NYUMC680/2020
 C241T C1059T C3037T C5310T C14408T A23403G G25563T

EPI_ISL_450398
 2020-03-30 2020-05-21
 United States hCoV-19/USA/NY-NYUMC681/2020
 C241T C1059T C3037T A3889G C6762T C14408T A23403G G25563T

EPI_ISL_450399
 2020-03-30 2020-05-21
 United States hCoV-19/USA/NJ-NYUMC682/2020
 G11083T C14805T T17247C C25658T G26144T

EPI_ISL_450528
 2020-03-30 2020-05-21
 Poland hCoV-19/Poland/1110540/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C3037T C14408T C21707T A23403G CCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29801-

EPI_ISL_450635 MT509702
 2020-03-30 2020-05-21
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20356/2020
 C241T C1059T C3037T C9891T C14408T A23403G G25563T C29627T

EPI_ISL_450730
 2020-03-30 2020-05-22
 Belgium hCoV-19/Belgium/ITM_C184/2020
 C241T C3037T C14408T T19839C A23403G C24099T GGG28881AAC

EPI_ISL_450753
 2020-03-30 2020-05-22
 United States hCoV-19/USA/MN-MDH-282/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C3037T C14408T A23403G G25563T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_450754
 2020-03-30 2020-05-22
 United States hCoV-19/USA/MN-MDH-283/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- A38R C241T C1059T C3037T C14408T T19527C A23403G G25563T C27964T C28099T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_450755
 2020-03-30 2020-05-22
 United States hCoV-19/USA/MN-MDH-285/2020
 ATTAAAGGTTTATACCT1- C241T C1059T C3037T C14408T C20987T A23403G G25563T A27821G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_450759
 2020-03-30 2020-05-22
 United States hCoV-19/USA/MN-MDH-290/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C8782T C17747T A17858G C18060T T28144C G28845A AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_450760
 2020-03-30 2020-05-22
 United States hCoV-19/USA/MN-MDH-291/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T C14408T A23403G G25563T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_450761
 2020-03-30 2020-05-22
 United States hCoV-19/USA/MN-MDH-292/2020
 ATTA1- C8782T C12924T C17747T A17858G C18060T A24694T T28144C CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_450762
 2020-03-30 2020-05-22
 United States hCoV-19/USA/MN-MDH-293/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C313T C3037T C14408T A23403G GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_450764
 2020-03-30 2020-05-22
 United States hCoV-19/USA/MN-MDH-296/2020
 ATTAAAGGTTTATACCT1- C241T C1059T C3037T C14408T A23403G G25563T T27504A A29865G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_450766
 2020-03-30 2020-05-22
 United States hCoV-19/USA/MN-MDH-299/2020
 AT1-G C241T C1059T C3037T C14408T A23403G G25563T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_450767
 2020-03-30 2020-05-22
 United States hCoV-19/USA/MN-MDH-300/2020
 ATTAAAGGTTTATAC1- C241T C1059T C3037T C14408T A23403G G24368T G25563T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_450768
 2020-03-30 2020-05-22
 United States hCoV-19/USA/MN-MDH-301/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- A38C C241T AAGTCATTT686- C1059T G2808A C3037T C14408T A23403G G25563T A26433G TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_450771
 2020-03-30 2020-05-22
 United States hCoV-19/USA/MN-MDH-310/2020
 AT1-G C8782T C17747T A17858G C18060T A24694T T28144C G28812T AAAAAAAAAAAAAAAA29888T

EPI_ISL_450772
 2020-03-30 2020-05-22
 United States hCoV-19/USA/MN-MDH-312/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C241T C1059T C3037T G11083T C11224T C14408T A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_450773
 2020-03-30 2020-05-22
 United States hCoV-19/USA/MN-MDH-313/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C8782T T28144C G28878A G29742A TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_450774
 2020-03-30 2020-05-22
 United States hCoV-19/USA/MN-MDH-316/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C8782T G14350T C17747T A17858G C18060T A24694T T28144C G28812T TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_450775
 2020-03-30 2020-05-22
 United States hCoV-19/USA/MN-MDH-317/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C1059T C3037T C14408T A23403G G25563T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_450776
 2020-03-30 2020-05-22
 United States hCoV-19/USA/MN-MDH-318/2020
 A1- C241T C1059T C2644T C3037T C14408T A23403G G25563T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_450777
 2020-03-30 2020-05-22
 United States hCoV-19/USA/MN-MDH-319/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- A2480G C2558T G11083T C14805T G18028T G26144T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_450778
 2020-03-30 2020-05-22
 United States hCoV-19/USA/MN-MDH-320/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- A2480G C2558T G11083T C14805T G26144T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_450779
 2020-03-30 2020-05-22
 United States hCoV-19/USA/MN-MDH-321/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- A2480G C2558T G11083T C14805T G26144T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_450780
 2020-03-30 2020-05-22
 United States hCoV-19/USA/MN-MDH-322/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1204T G1747A C3037T C14408T C16289T A23403G G25429T GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_451108
 2020-03-30 2020-05-23
 Australia hCoV-19/Australia/SAP070/2020
 C241T C2416T C3037T C14408T C22033A A23403G G25563T

EPI_ISL_451189
 2020-03-30 2020-05-23
 Uganda hCoV-19/Uganda/UG007/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T G10097A C14408T A22466G A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_451190
 2020-03-30 2020-05-23
 Uganda hCoV-19/Uganda/UG008/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC T29845- GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_451192
 2020-03-30 2020-05-23
 Uganda hCoV-19/Uganda/UG010/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_451193
 2020-03-30 2020-05-23
 Uganda hCoV-19/Uganda/UG011/2020
 ATTAA1- C884T G1397A G8653T G11083T A19073G G27915T T28688C C29077T G29742T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_451797 LR824360
 2020-03-30 2020-05-25
 Switzerland 101130
 C241T C3037T C3373A C6016Y C14408T T22516W G23401K A23403G G24040A C25378Y GGG28881AAC G29422T

EPI_ISL_451798 LR824358
 2020-03-30 2020-05-25
 Switzerland 101131
 C241T C398Y C3037T C14408T C15324T A23403G C25513T T26726C

EPI_ISL_451799 LR824363
 2020-03-30 2020-05-25
 Switzerland 101132
 C241T C1059T C3037T A3116G C14408T C22347S T22516W A23403G G25563T C28472T

EPI_ISL_451800 LR824361
 2020-03-30 2020-05-25
 Switzerland 101133
 C241T C1059T C3037T A3116G C14408T A19298W A19339W G21185R A23403G G25563T

EPI_ISL_451802 LR824364
 2020-03-30 2020-05-25
 Switzerland 101135
 C241T C311Y C1059T C2507Y C3037T A5257W C5348T C14408T G21334K G21558R C22347S A22492R A23403G G25563T G27670R

EPI_ISL_451803 LR824367
 2020-03-30 2020-05-25
 Switzerland 101136
 C241T C1059T C3037T C14408T T18513C C22347S A23403G G25563T

EPI_ISL_452044
 2020-03-30 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-176/2020
 C241T C1059T C1302T C3037T C14408T G21508A A23403G G25563T

EPI_ISL_452142
 2020-03-30 2020-05-26
 Belgium hCoV-19/Belgium/20A37/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C2113T C3037T C7765T C14408T C17690T C18877T A23403G G25563T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_452206
 2020-03-30 2020-05-27
 India hCoV-19/India/NIV-6311/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C6312A G11083T C13730T C19524T C23929T G25647T GCGCTTCGATTGTGTGCGTACTGCTGCAATATTGTTAACGTGAGTCTT26350A C28311T A29827T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830T

EPI_ISL_452306
 2020-03-30 2020-05-27
 United States hCoV-19/USA/MI-MDHHS-SC20432/2020
 C241T C1059T C3037T C8541T C14408T A23403G G25563T

EPI_ISL_453924
 2020-03-30 2020-05-28
 Portugal hCoV-19/Portugal/PT0210/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- C241T C3037T C8318A C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_453925
 2020-03-30 2020-05-28
 Portugal hCoV-19/Portugal/PT0211/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C8727T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_453929
 2020-03-30 2020-05-28
 Portugal hCoV-19/Portugal/PT0215/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- C241T T505C C3037T C3261T C14408T A15984T C20946T A23403G GGG28881AAC C28892T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_453931
 2020-03-30 2020-05-28
 Portugal hCoV-19/Portugal/PT0217/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- C241T C1346T C3037T C3140T C14408T C22450T A23403G G24077T T27206C C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454209
 2020-03-30 2020-05-28
 Portugal hCoV-19/Portugal/PT0485/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G T24194C C26058T A26530G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454210
 2020-03-30 2020-05-28
 Portugal hCoV-19/Portugal/PT0486/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T A339G G2494T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454315
 2020-03-30 2020-05-28
 Portugal hCoV-19/Portugal/PT0592/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C7417T C14408T A20268G A23403G G29734C TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454353
 2020-03-30 2020-05-28
 United States hCoV-19/USA/PA-MGEL62/2020
 C241T C1059T C3037T C11916T C14408T A23403G G25563T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_454354
 2020-03-30 2020-05-28
 United States hCoV-19/USA/PA-MGEL63/2020
 C241T C1059T T1477C C3037T C14408T C19185T A23403G G25563T G27217A GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_454357
 2020-03-30 2020-05-28
 United States hCoV-19/USA/PA-MGEL68/2020
 C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G28300T G29540A GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_454358
 2020-03-30 2020-05-28
 United States hCoV-19/USA/PA-MGEL70/2020
 C241T C1059T C3037T C14408T A21137G A23403G G25563T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_454360
 2020-03-30 2020-05-28
 United States hCoV-19/USA/PA-MGEL74/2020
 C241T C2416T C3037T C14408T A23403G C25463T G25563T G26233T C27881T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_454362
 2020-03-30 2020-05-28
 United States hCoV-19/USA/PA-MGEL76/2020
 C241T T1918C C3037T C14408T C18877T C23230T A23403G G25563T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_454364
 2020-03-30 2020-05-28
 United States hCoV-19/USA/PA-MGEL78/2020
 C241T C1059T C3037T C14408T A23403G G25563T G26690T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_454365
 2020-03-30 2020-05-28
 United States hCoV-19/USA/PA-MGEL80/2020
 C241T C1059T C3037T C14408T A23403G G25563T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_454542
 2020-03-30 2020-05-28
 India hCoV-19/India/NIV-6315/2020
 C6312A G11083T C13730T C19524T C23929T G25647T C28311T G29830T

EPI_ISL_454606
 2020-03-30 2020-05-28
 Croatia hCoV-19/Croatia/I7-S21new/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAA29885-

EPI_ISL_454646 MT532557
 2020-03-30 2020-05-28
 United States SARS-CoV-2/human/USA/TX-CDC-0406/2020
 C241T C619T C1059T C3037T C14408T A14912G A23403G G25563T G29543T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_455165
 2020-03-30 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_361/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T18083C A20255G A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455253
 2020-03-30 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_451/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1997T C3037T C14408T A23403G G29422T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455254
 2020-03-30 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_452/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C478T C3037T G12550A C14408T A20268G C20740A A23403G G29734C G29751T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455361 MW008585
 2020-03-30 2020-05-29
 United States SARS-CoV-2/human/USA/GA-EHC-115L/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T C3037T C3157T C14408T A23403G G25563T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_455566
 2020-03-30 2020-05-31
 Croatia hCoV-19/Croatia/17-S7new/2020
 C241T C3037T C3177T G11761T C14408T C18129T A23403G G28300T AAAAAAAAAAAAAAAAAAA29885-

EPI_ISL_455643
 2020-03-30 2020-06-01
 India hCoV-19/India/S13/2020
 C241T C3037T C14408T A23403G

EPI_ISL_455706
 2020-03-30 2020-06-01
 Vietnam hCoV-19/Vietnam/VNHN_3629/2020
 C241T C3037T C14408T G18021T A23403G C26028T GGG28881AAC

EPI_ISL_455984
 2020-03-30 2020-06-01
 United States hCoV-19/USA/LA-EVTL141/2020
 C241T C1059T C1943T C3037T C14408T C21911T A23403G G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_456071
 2020-03-30 2020-06-01
 Brazil hCoV-19/Brazil/RJ-899/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G13385A C14408T C21292A A23403G T27299C GGG28881AAC T29148C CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_456276
 2020-03-30 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1833/2020
 C8782T C17747T A17858G C18060T C23430T T28144C

EPI_ISL_456284
 2020-03-30 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1856/2020
 C3096T C12781T G13627T C14805T C15540T G17944T G26144T A28338G

EPI_ISL_456288
 2020-03-30 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1862/2020
 C241T C1059T C14408T C24034T

EPI_ISL_456289
 2020-03-30 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1863/2020
 C241T C1059T C3037T C14408T C16260T A23403G G25563T C28821A

EPI_ISL_456290
 2020-03-30 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1864/2020
 C241T C1059T C3037T C14408T C16260T A23403G G25563T C28821A

EPI_ISL_456319
 2020-03-30 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1949/2020
 C241T C3037T C6723T C14408T A23403G T26094C

EPI_ISL_456898
 2020-03-30 2020-06-02
 United Kingdom hCoV-19/Scotland/EDB2778/2020
 C241T C3037T C14408T A23403G

EPI_ISL_456956
 2020-03-30 2020-06-02
 United Kingdom hCoV-19/Scotland/EDB5052/2020
 C241T C3037T C14408T A23403G C23422T T23849C C29686T

EPI_ISL_457009
 2020-03-30 2020-06-02
 United Kingdom hCoV-19/Scotland/EDB5368/2020
 C241T C3037T C14408T C20823T A23403G C23422T T23849C C29686T

EPI_ISL_457011
 2020-03-30 2020-06-02
 United Kingdom hCoV-19/Scotland/EDB5373/2020
 C241T C1059T C3037T C4551T C14408T C17949T T18351C G19684T A23403G G25563T

EPI_ISL_457176
 2020-03-30 2020-06-02
 United Kingdom hCoV-19/England/EXET-135EAD/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_457675
 2020-03-30 2020-06-02
 United Kingdom hCoV-19/England/SHEF-D07AA/2020
 G11083T C14805T G16564T G20024A C23854T G26144T

EPI_ISL_457787 MT646116
 2020-03-30 2020-06-02
 United States SARS-CoV-2/human/USA/MD-HP00158/2020
 C241T C629T C1059T C3037T C14408T A23403G C23453T G25563T G28380K

EPI_ISL_457818 MT646089
 2020-03-30 2020-06-02
 United States SARS-CoV-2/human/USA/MD-HP00129/2020
 C241T C1059T C3037T C14408T C17502T A23403G G25563T

EPI_ISL_457821 MT646092
 2020-03-30 2020-06-02
 United States SARS-CoV-2/human/USA/MD-HP00133/2020
 C241T C2416T C3037T C14408T A23403G G25563T

EPI_ISL_458217
 2020-03-30 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0330247/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T19839C A23403G C24099T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458218
 2020-03-30 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0330248/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1142T C3037T C14408T C15324T T17811C A23403G G24770T C27434T A28765G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458219
 2020-03-30 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0330249/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6720T C7834T A11839G C14408T T19839C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458220
 2020-03-30 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0330250/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G A29521T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458221
 2020-03-30 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0330251/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4158T G10098A G11083T C11580T C13620T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458222
 2020-03-30 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0330252/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458223
 2020-03-30 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0330253/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T C23275A A23403G A28765G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458224
 2020-03-30 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0330254/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T19839C A23403G C24099T C25466T GGG28881AAC C29774T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458225
 2020-03-30 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0330255/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A C13511T G17122T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458226
 2020-03-30 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0330256/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G17014T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458227
 2020-03-30 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0330257/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T19839C G22017T A23403G C24099T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_459886
 2020-03-30 2020-06-04
 Canada hCoV-19/Canada/ON_QGLO-035/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T T29848A A29850T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_459887
 2020-03-30 2020-06-04
 Canada hCoV-19/Canada/ON_QGLO-036/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C11916T A12103G C14408T C18998T A23403G G25563T G29540A ATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29850T

EPI_ISL_459888
 2020-03-30 2020-06-04
 Canada hCoV-19/Canada/ON_QGLO-037/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C2416T C3037T C10369T C14408T A23403G G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_459889
 2020-03-30 2020-06-04
 Canada hCoV-19/Canada/ON_QGLO-038/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C2416T C3037T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_459891
 2020-03-30 2020-06-04
 Canada hCoV-19/Canada/ON_QGLO-041/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C10188T C14408T A23403G C24382T T24982C G25563T C27964T TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856CT

EPI_ISL_459892
 2020-03-30 2020-06-04
 Canada hCoV-19/Canada/ON_QGLO-042/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C2416T C3037T C14408T A23403G G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_459956
 2020-03-30 2020-06-05
 Malaysia hCoV-19/Malaysia/IMR_WC9127/2020
 AT1TTAATCAGGCAGTCCTGTTTCTTCCTTATTGCCCAG A4G G7T TTTA9CCCC -14CCCAAGGCTACACAGGATAGATTAAGA C6312A C9391T G11083T C13730T C23929T C28311T AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_460004
 2020-03-30 2020-06-05
 United States hCoV-19/USA/MI-MDHHS-SC20465/2020
 C241T C3037T C14408T T16926C C18877T A23403G G25563T

EPI_ISL_460691
 2020-03-30 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_518/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C478T C3037T G12550A T12619C C14408T A20268G C20740A A23403G G29734C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460704
 2020-03-30 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_531/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4586T A10323G G12550A C14408T A20268G C20740A A23403G A27691G G29734C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460792
 2020-03-30 2020-06-06
 Netherlands hCoV-19/Netherlands/NoordHolland_11/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- C17410T C29738T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460793
 2020-03-30 2020-06-06
 Netherlands hCoV-19/Netherlands/NoordHolland_12/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2260T C3037T C11339T C14408T A23403G G29422T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460794
 2020-03-30 2020-06-06
 Netherlands hCoV-19/Netherlands/NoordHolland_13/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G29422T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461286
 2020-03-30 2020-06-06
 Netherlands hCoV-19/Netherlands/Zeeland_47/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1537C C3037T T13006C C14408T G19684T A23403G G25563T C25688T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461425 MT683393
 2020-03-30 2020-06-06
 United States SARS-CoV-2/human/USA/ID-UW-4595/2020
 ATTAAAG1- G8T T11G C241T T833C C1059T C3037T C14408T C17676T A23403G G25563T C27964T

EPI_ISL_461710
 2020-03-30 2020-06-06
 United Kingdom hCoV-19/Scotland/EDB375/2020
 C241T C3037T C14408T C18395T A23403G C25433T

EPI_ISL_462149
 2020-03-30 2020-06-07
 Russia hCoV-19/Russia/CRIE160583/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C1758T C3037T C14408T A23403G -27331T TGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29785-

EPI_ISL_462158
 2020-03-30 2020-06-08
 Belgium hCoV-19/Belgium/RM-0330304/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A23989G C25603T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462159
 2020-03-30 2020-06-08
 Belgium hCoV-19/Belgium/VDLM-0330305/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G521T G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462160
 2020-03-30 2020-06-08
 Belgium hCoV-19/Belgium/DWW-0330306/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1738T C3037T C14408T A20268G A23403G G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462161
 2020-03-30 2020-06-08
 Belgium hCoV-19/Belgium/DJS-0330307/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A24862G C25831T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462182
 2020-03-30 2020-06-08
 Belgium hCoV-19/Belgium/CGR-0330328/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G2305T T5344C G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462183
 2020-03-30 2020-06-08
 Belgium hCoV-19/Belgium/VBWF-0330329/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C11074T G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462184
 2020-03-30 2020-06-08
 Belgium hCoV-19/Belgium/HMJ-0330330/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T19839C G20477T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462185
 2020-03-30 2020-06-08
 Belgium hCoV-19/Belgium/SRL-0330331/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14230T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462186
 2020-03-30 2020-06-08
 Belgium hCoV-19/Belgium/CL-0330332/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462189
 2020-03-30 2020-06-08
 Belgium hCoV-19/Belgium/BA-0330335/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4320T C14408T C21590T A23403G G25563T C25688T A28521G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462201
 2020-03-30 2020-06-08
 Belgium hCoV-19/Belgium/BN-0330347/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A17207G A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462205
 2020-03-30 2020-06-08
 Belgium hCoV-19/Belgium/DNM-0330351/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462212
 2020-03-30 2020-06-08
 Belgium hCoV-19/Belgium/TA-0330358/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T23287C A23403G A23870G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462217
 2020-03-30 2020-06-08
 Belgium hCoV-19/Belgium/MFM-0330363/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2113T C3037T C7765T C14408T C17690T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462219
 2020-03-30 2020-06-08
 Belgium hCoV-19/Belgium/PBT-0330365/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4320T C14408T C21590T A23403G G25563T C25688T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462221
 2020-03-30 2020-06-08
 Belgium hCoV-19/Belgium/SAA-0330367/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2113T C3037T C7765T G9130T C14408T C17690T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462238
 2020-03-30 2020-06-08
 Belgium hCoV-19/Belgium/LMA-0330384/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A11438G C14408T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462239
 2020-03-30 2020-06-08
 Belgium hCoV-19/Belgium/DLM-0330385/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1213T C3037T A5541T G7798T A13947T C14408T A23403G C26013T G26526T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462241
 2020-03-30 2020-06-08
 Belgium hCoV-19/Belgium/VDA-0330387/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T19839C A23403G C24099T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462475
 2020-03-30 2020-06-08
 Bosnia and Herzegovina hCoV-19/Bosnia and Herzegovina/ChVir7377/2020
 ATTAAAGGTTTATAC1- C241T C3037T C14408T C15324T C23179T A23403G C29769T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_462975
 2020-03-30 2020-06-08
 United States hCoV-19/USA/WY-WYPHL-00084/2020
 AT1- C241T C1059T C3037T C11916T C14408T C16611T A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_462979
 2020-03-30 2020-06-08
 United States hCoV-19/USA/WY-WYPHL-00088/2020
 A1- C241T C1059T C3037T G10870T A12446G C14408T A23403G G25563T G25784T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_463003 MT499217
 2020-03-30 2020-05-20
 Tunisia SARS-CoV-2/human/TUN/COV1339/2020
 TTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC2- T41C C241T C2113T C3037T C7765T A8658G G8781A C14408T C16178T C17690T C18877T G19525T C22210T G22424A T22435C A22503G A23403G G25563T AGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29687-

EPI_ISL_463740
 2020-03-30 2020-06-10
 United Arab Emirates hCoV-19/United Arab Emirates/P1/2020
 T490A C3177T C6040T C8782T C8950T G12478A A18222G T18736C T19713C C22350T C24034T T26729C G28077C T28144C C28896G C29451T A29700G

EPI_ISL_464143
 2020-03-30 2020-06-11
 South Africa hCoV-19/SouthAfrica/Tygerberg_32/2020
 T8022G A8026T G10097A C13536T C14408T T20891G A23403G C23731T AG24389CC C25169T GGG28881AAC

EPI_ISL_465877
 2020-03-30 2020-06-11
 United Kingdom hCoV-19/England/20140008604/2020
 C241T C3037T C6091Y C14408T A23403G C25350T

EPI_ISL_465881
 2020-03-30 2020-06-11
 United Kingdom hCoV-19/England/20140060204/2020
 G1440A G2891A C7011T C10198T G12202T G25593C

EPI_ISL_465884
 2020-03-30 2020-06-11
 United Kingdom hCoV-19/England/20140064404/2020
 A2480G C2558T G11083T C14805T G26144T C29409T

EPI_ISL_465885
 2020-03-30 2020-06-11
 United Kingdom hCoV-19/England/20140064604/2020
 C241T C3037T C14408T C22326T A23403G G27281K GGG28881AAC

EPI_ISL_465887
 2020-03-30 2020-06-11
 United Kingdom hCoV-19/England/20140068504/2020
 C241T C2416T C3037T C14408T C14786T G20578T A23403G T25485C G25563T

EPI_ISL_465895
 2020-03-30 2020-06-11
 United Kingdom hCoV-19/England/20142001904/2020
 A187G C241T T844A C3037T A5650G C14408T C14741T A21222G A23403G

EPI_ISL_465896
 2020-03-30 2020-06-11
 United Kingdom hCoV-19/England/20142003004/2020
 C241T C313T C3037T C14408T A23403G C27128T GGG28881AAC

EPI_ISL_465904
 2020-03-30 2020-06-11
 United Kingdom hCoV-19/England/20142005504/2020
 C241T C3037T C7398S G10887K C14408T A23403G C26111T GGG28881AAC G29262T

EPI_ISL_465906
 2020-03-30 2020-06-11
 United Kingdom hCoV-19/England/20142006104/2020
 G149K C241T C3037T C10319Y C14408T G21204T C21440Y A23403G GGG28881AAC

EPI_ISL_465921
 2020-03-30 2020-06-11
 United Kingdom hCoV-19/England/20142014904/2020
 T7876A G26144T

EPI_ISL_465923
 2020-03-30 2020-06-11
 United Kingdom hCoV-19/England/20142016604/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_465936
 2020-03-30 2020-06-11
 United Kingdom hCoV-19/England/20142025204/2020
 C241T C3037T C5526Y A7636R C14408T A23403G GGG28881AAC

EPI_ISL_465940
 2020-03-30 2020-06-11
 United Kingdom hCoV-19/England/20142027104/2020
 C241T C3037T C5240T C14408T A23403G G27857T GGG28881AAC AA29891RM

EPI_ISL_465941
 2020-03-30 2020-06-11
 United Kingdom hCoV-19/England/20142027704/2020
 C14805T G24236T G25183T G26144T G28881A G29692T A29871G

EPI_ISL_465943
 2020-03-30 2020-06-11
 United Kingdom hCoV-19/England/20142078104/2020
 C241T C3037T T9640Y G10097A C14408T A23403G C23731T G28198T G28580T GGG28881AAC G29009K

EPI_ISL_465944
 2020-03-30 2020-06-11
 United Kingdom hCoV-19/England/20142078204/2020
 C241T C3037T G12721K C14408T A23403G G27715K GGG28881AAC

EPI_ISL_465946
 2020-03-30 2020-06-11
 United Kingdom hCoV-19/England/20142084004/2020
 A2480G C2558T C7011T G11405A C14805T G26144T C28869T

EPI_ISL_465962
 2020-03-30 2020-06-11
 United Kingdom hCoV-19/England/20142131104/2020
 C241T C2675A C3037T C14408T A23403G GGG28881AAC A29871T

EPI_ISL_465976
 2020-03-30 2020-06-11
 United Kingdom hCoV-19/England/20144011304/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_465977
 2020-03-30 2020-06-11
 United Kingdom hCoV-19/England/20144011404/2020
 C241T C3037T C14408T A23403G C24822Y GGG28881AAC

EPI_ISL_465992
 2020-03-30 2020-06-11
 United Kingdom hCoV-19/England/20144022604/2020
 C241T C3037T T7792C C14408T G21724T A23403G GGG28881AAC C29738T A29871T

EPI_ISL_466120
 2020-03-30 2020-06-11
 United Kingdom hCoV-19/England/20149006704/2020
 G219A C241T C1059T C1968T C3037T C14408T A23403G C23638T G25563T G29705T

EPI_ISL_466124
 2020-03-30 2020-06-11
 United Kingdom hCoV-19/England/20149007104/2020
 C241T C346T C3037T C14408T A20268G A23403G

EPI_ISL_466142
 2020-03-30 2020-06-11
 United Kingdom hCoV-19/England/20149009004/2020
 C1514T A2480G C2558T A4539W C6195Y G10112K T12803K C14805T G18310K A19904G C20842Y C22730M C25561Y G26144T C28059Y G29140T

EPI_ISL_466145
 2020-03-30 2020-06-11
 United Kingdom hCoV-19/England/20149009304/2020
 C241T C3037T C8139Y C14408T C17010T C19961T A23403G GGG28881AAC C29281T

EPI_ISL_467953
 2020-03-30 2020-06-16
 United States hCoV-19/USA/CA-SR0419/2020
 C241T C3037T C14408T A20268G A23403G T24076C C27630T C28854T

EPI_ISL_467966
 2020-03-30 2020-06-16
 United States hCoV-19/USA/CA-SR0439/2020
 C241T C1059T T1211G C3037T C14408T G15265A A23403G G24985T G25563T C27964T

EPI_ISL_467971
 2020-03-30 2020-06-16
 United States hCoV-19/USA/CA-SR0447/2020
 C241T C3037T C4540T G4904T G5206T C14408T A23403G C24138T C25350T

EPI_ISL_467975
 2020-03-30 2020-06-16
 United States hCoV-19/USA/CA-SR0452/2020
 C241T C3037T C14408T A23403G C24374T C25350T C27503T

EPI_ISL_467979
 2020-03-30 2020-06-16
 United States hCoV-19/USA/CA-SR0457/2020
 C241T C3037T C4540T G4904T G5206T C14408T A23403G C24138T C24384T C25350T

EPI_ISL_467983
 2020-03-30 2020-06-16
 United States hCoV-19/USA/CA-SR0461/2020
 C241T C3037T C4540T G4904T G5206T C14408T A23403G C24138T C25350T

EPI_ISL_468031
 2020-03-30 2020-06-16
 Australia hCoV-19/Australia/SAP203/2020
 ATTA1- C241T G1589A C3037T A10861G C14408T A23403G G25429T G29474T

EPI_ISL_468036
 2020-03-30 2020-06-16
 Australia hCoV-19/Australia/SAP206/2020
 C241T C2940T C3037T C14408T A23403G A26178T

EPI_ISL_468411 MT628147
 2020-03-30 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1445/2020
 C241T C313T C3037T A11348G C14408T A23403G GGG28881AAC

EPI_ISL_468413 MT628148
 2020-03-30 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1447/2020
 C241T C1059Y C3037T C10319Y G11083K C14408T G20679K A23403G G25563K C25916Y C26499Y C27964Y TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_468449 MT628177
 2020-03-30 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1502/2020
 AT1- C241T C3037T C7851Y C14408T G14718R A23403G GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_468497 MT628221
 2020-03-30 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1560/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C1059T C1238Y C1887T C3037T C14408T A17615G A23403G T24451Y G25563T C29614T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_468617 MT631808
 2020-03-30 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1677/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C379A C1059T C3037T C14408T A20374G A23403G G25563T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_468618 MT631809
 2020-03-30 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1678/2020
 C241T C3037T C14408T C22480Y A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_469049
 2020-03-30 2020-06-17
 Morocco hCoV-19/Morocco/Mor-CoV-2/2020
 C241T C3037T C14408T C18877T A23403G G25563T G29315C

EPI_ISL_469052
 2020-03-30 2020-06-17
 Morocco hCoV-19/Morocco/Mor-CoV-4/2020
 C241T C1059T T1666C C3037T C14408T A23403G G25563T

EPI_ISL_469053
 2020-03-30 2020-06-17
 Morocco hCoV-19/Morocco/Mor-CoV-5/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_469749
 2020-03-30 2020-06-18
 United Kingdom hCoV-19/England/BRIS-127688/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2189T C2416T C3037T C14408T C14786T G17761K G20578T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469930
 2020-03-30 2020-06-18
 United Kingdom hCoV-19/Scotland/GCVR-172202/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C22879A A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469935
 2020-03-30 2020-06-18
 United Kingdom hCoV-19/Scotland/GCVR-172378/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C884T ATG1605- C12710T C22858T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469943
 2020-03-30 2020-06-18
 United Kingdom hCoV-19/Scotland/GCVR-1721E7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A21405T A23403G C23701T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469946
 2020-03-30 2020-06-18
 United Kingdom hCoV-19/Scotland/GCVR-17224E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C593T C3037T C14408T C19170T G19509A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469957
 2020-03-30 2020-06-18
 United Kingdom hCoV-19/Scotland/GCVR-1722C6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C22414T C22879A A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469961
 2020-03-30 2020-06-18
 United Kingdom hCoV-19/Scotland/GCVR-172387/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T G14055T A14601G C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469963
 2020-03-30 2020-06-18
 United Kingdom hCoV-19/Scotland/GCVR-1720DB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A T13216G C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469982
 2020-03-30 2020-06-18
 United Kingdom hCoV-19/Scotland/GCVR-172396/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1420T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469985
 2020-03-30 2020-06-18
 United Kingdom hCoV-19/Scotland/GCVR-172150/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1545T C3037T C14408T C22879A A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469991
 2020-03-30 2020-06-18
 United Kingdom hCoV-19/Scotland/GCVR-17217E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C8626T C12710T C27247T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_470005
 2020-03-30 2020-06-18
 United Kingdom hCoV-19/Scotland/GCVR-172053/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471265
 2020-03-30 2020-06-19
 United States hCoV-19/USA/WI-WSLH-200101/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G6884T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_472538
 2020-03-30 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-15C7B4/2020
 ATTAAAGGTT1- G1820A A2480G C2558T T8599C G11083T C14805T G16236T G26144T C28344T

EPI_ISL_475111
 2020-03-30 2020-06-23
 Sweden hCoV-19/Sweden/20-08677/2020
 C241T C3037T C12400T C13458T C14408T T19839C A23403G C24099T GGG28881AAC

EPI_ISL_475112
 2020-03-30 2020-06-23
 Sweden hCoV-19/Sweden/20-08678/2020
 C241T C3037T C12400T C14408T T19839C A23403G C24099T GGG28881AAC

EPI_ISL_475113
 2020-03-30 2020-06-23
 Sweden hCoV-19/Sweden/20-08679/2020
 C241T C3037T C12400T C14408T T19839C A23403G C24099T GGG28881AAC

EPI_ISL_475114
 2020-03-30 2020-06-23
 Sweden hCoV-19/Sweden/20-08725/2020
 C241T C3037T G5200A C14195A C14408T A23403G

EPI_ISL_475115
 2020-03-30 2020-06-23
 Sweden hCoV-19/Sweden/20-50547/2020
 C241T C3037T C12469T C14408T T20631C A23403G C27046T GGG28881AAC

EPI_ISL_475144
 2020-03-30 2020-06-23
 Sweden hCoV-19/Sweden/20-50518/2020
 C241T C1059T A1399G C3037T G7936T C14408T G20002T A23403G G25563T

EPI_ISL_475145
 2020-03-30 2020-06-23
 Sweden hCoV-19/Sweden/20-50529/2020
 C241T C3037T G3689A C14408T C23086T A23403G C27046T GGG28881AAC

EPI_ISL_475282
 2020-03-30 2020-06-23
 United Kingdom hCoV-19/England/PORT-2D0D97/2020
 C241T C3037T C9857T C14408T A23403G A26530G

EPI_ISL_475283
 2020-03-30 2020-06-23
 United Kingdom hCoV-19/England/PORT-2D0DA6/2020
 G11083T C14805T T17247C G26144T

EPI_ISL_475284
 2020-03-30 2020-06-23
 United Kingdom hCoV-19/England/PORT-2D0DB5/2020
 C3787T C6027T A10236G C11074T G11083T C14805T T17247C C17750T C24130T G24386T G25563T G26144T

EPI_ISL_475286
 2020-03-30 2020-06-23
 United Kingdom hCoV-19/England/PORT-2D0DD3/2020
 ATG1605-

EPI_ISL_475287
 2020-03-30 2020-06-23
 United Kingdom hCoV-19/England/PORT-2D0DE2/2020
 C241T C3037T C5340T A9634T G11083T C14408T A23403G G25429T

EPI_ISL_475288
 2020-03-30 2020-06-23
 United Kingdom hCoV-19/England/PORT-2D0DF1/2020
 C241T C3037T C9857T C14408T A23403G A26530G

EPI_ISL_475291
 2020-03-30 2020-06-23
 United Kingdom hCoV-19/England/PORT-2D0E2B/2020
 C241T C3037T C14408T C16289T A23403G G25429T

EPI_ISL_475292
 2020-03-30 2020-06-23
 United Kingdom hCoV-19/England/PORT-2D0E3A/2020
 C1457T A2480G C2558T G11083T C14805T G26144T

EPI_ISL_475293
 2020-03-30 2020-06-23
 United Kingdom hCoV-19/England/PORT-2D0E49/2020
 C241T C3037T C14408T C19170T G19509A A23403G G28077T GGG28881AAC

EPI_ISL_475296
 2020-03-30 2020-06-23
 United Kingdom hCoV-19/England/PORT-2D0E76/2020
 C241T C3037T C14408T C16289T A23403G G25429T

EPI_ISL_475298
 2020-03-30 2020-06-23
 United Kingdom hCoV-19/England/PORT-2D0E94/2020
 C241T C3037T C14408T A23403G C25528T GGG28881AAC

EPI_ISL_475300
 2020-03-30 2020-06-23
 United Kingdom hCoV-19/England/PORT-2D0EB2/2020
 C241T A1461G C3037T C5730T C14408T G19542T A23403G G24328A GGG28881AAC

EPI_ISL_475612
 2020-03-30 2020-06-23
 United States hCoV-19/USA/CA-CSMC134/2020
 C337T T490A C3177T C6040T C8782T C8950T C12005G G12478A C13384T T18736C G18826A T23652C C24034T T26729C G28077C T28144C C28896G C29451T A29700G

EPI_ISL_475653
 2020-03-30 2020-06-23
 United States hCoV-19/USA/CA-CSMC41/2020
 C241T C3037T C14408T C18877T A23403G G25563T

EPI_ISL_475781
 2020-03-30 2020-06-25
 Austria hCoV-19/Austria/CeMM0307/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1457T C1594T C3037T C11109T C14408T A23403G G25563T C29743T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475782
 2020-03-30 2020-06-25
 Austria hCoV-19/Austria/CeMM0308/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10688T C14408T A23403G C23802T G28122T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475783
 2020-03-30 2020-06-25
 Austria hCoV-19/Austria/CeMM0311/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475784
 2020-03-30 2020-06-25
 Austria hCoV-19/Austria/CeMM0312/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G G24883R G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475785
 2020-03-30 2020-06-25
 Austria hCoV-19/Austria/CeMM0313/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475786
 2020-03-30 2020-06-25
 Austria hCoV-19/Austria/CeMM0314/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475787
 2020-03-30 2020-06-25
 Austria hCoV-19/Austria/CeMM0315/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T9530K C26088T T27801C T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475790
 2020-03-30 2020-06-25
 Austria hCoV-19/Austria/CeMM0319/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T9477A C14805T C21304A G25979T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475791
 2020-03-30 2020-06-25
 Austria hCoV-19/Austria/CeMM0320/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9165T A10874G C14408T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475821
 2020-03-30 2020-06-25
 Austria hCoV-19/Austria/CeMM0377/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8293T A11839G C14408T C14676Y C16575T C18348Y T19839C T21198Y A23403G C28253Y C28603Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475891
 2020-03-30 2020-06-25
 Austria hCoV-19/Austria/CeMM0519/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1567T C3037T A13510R C14408T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476069
 2020-03-30 2020-06-25
 Hungary hCoV-19/Hungary/UD-5394/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C4752T C14408T A23403G C26326T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476078
 2020-03-30 2020-06-25
 Hungary hCoV-19/Hungary/US-636w/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A24862G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477014
 2020-03-30 2020-06-28
 Ecuador hCoV-19/Ecuador/USFQ-004/2020
 C241T C3037T C14408T A23403G T26512C

EPI_ISL_477622
 2020-03-30 2020-06-29
 Hungary hCoV-19/Hungary/US-3761w/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6404T C8208T G13723T C14408T C15324T C19145T A23403G C29362T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477676
 2020-03-30 2020-06-29
 United States hCoV-19/USA/CT-UW-2466/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TH C241T C1059T C3037T C11916T C14408T C18998T A20553G A23403G G25563T G29540A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_477677
 2020-03-30 2020-06-29
 United States hCoV-19/USA/CT-UW-2468/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A31T C36T C241T C1059T C3037T A7558G C14408T A20003G A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_477679
 2020-03-30 2020-06-29
 United States hCoV-19/USA/CT-UW-2487/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C6286G C8290T C14408T C18877T A23403G G25563T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_477705
 2020-03-30 2020-06-29
 United States hCoV-19/USA/WA-UW-2268/2020
 ATTAAA1- C36T C241T C1059T C3037T C14408T A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_477707
 2020-03-30 2020-06-29
 United States hCoV-19/USA/WA-UW-2276/2020
 AT1GA A31W C36T C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_477708
 2020-03-30 2020-06-29
 United States hCoV-19/USA/WA-UW-2280/2020
 ATTAAAGGTTTAT1- A14T CCCAGGTAACAAACCAA19- C36T C8782T G11083T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_477709
 2020-03-30 2020-06-29
 United States hCoV-19/USA/WA-UW-2281/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- C36T C241T C1059T C3037T C12809T C14408T A23403G G25563T C26625T G28632T TG29867AA C29870A -29904AAAAAAAAAAAAAA

EPI_ISL_477710
 2020-03-30 2020-06-29
 United States hCoV-19/USA/WA-UW-2293/2020
 ATTAAA1- A31T C36T C241T A1842G C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_477711
 2020-03-30 2020-06-29
 United States hCoV-19/USA/WA-UW-2317/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C36Y C241T C1059T C3037T C14408T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_477712
 2020-03-30 2020-06-29
 United States hCoV-19/USA/WA-UW-2320/2020
 ATTAAAGGTTTAT1- A14T CCCAGGTAACAAACCAA19- C36T C241T C1059T C3037T G4975T C14408T G19388T A23403G G25523T G25563T T27869C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_477714
 2020-03-30 2020-06-29
 United States hCoV-19/USA/WA-UW-2374/2020
 ATTAAAGGTT1- A31T AAC34TTT C241T G374A G659A C1059T C3037T C4980T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_477715
 2020-03-30 2020-06-29
 United States hCoV-19/USA/WA-UW-2376/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A31W C36T C241T C2416T C3037T C14408T A23403G G25563T C29870M AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_477716
 2020-03-30 2020-06-29
 United States hCoV-19/USA/WA-UW-2386/2020
 ATTAAAGGTTTATACCTTCCCA1- A31T AAC34TTT C241T C1059T C3037T C14408T A23403G G25563T -29904A

EPI_ISL_477717
 2020-03-30 2020-06-29
 United States hCoV-19/USA/WA-UW-2521/2020
 ATTAAAGGTTTAT1- A14T CCCAGGTAACAAACCAA19- C36T C8782T C10818T C14937T C17747T A17858G C18060T T28144C GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_477718
 2020-03-30 2020-06-29
 United States hCoV-19/USA/WA-UW-2541/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- AAC34TTT C241T T833C C1059T G1264T C3037T C14408T A23403G G25563T C27964T A29866C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_477719
 2020-03-30 2020-06-29
 United States hCoV-19/USA/WA-UW-2548/2020
 ATTAAA1- A31T C36T C8782T T15927G C17747T A17858G C18060T C26936T T28144C -29904AAAAAAAAAAAA

EPI_ISL_477720
 2020-03-30 2020-06-29
 United States hCoV-19/USA/WA-UW-2557/2020
 T3D A6- C36T C241T C1059T C3037T C14408T T17813C A23403G T24658C G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_478415
 2020-03-30 2020-06-30
 United Kingdom hCoV-19/England/LOND-D6C3C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G6358T G11083T C14805T C16220T G19999T G26144T C27532T ATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29815-

EPI_ISL_478622
 2020-03-30 2020-06-30
 United Kingdom hCoV-19/England/NORT-294EE7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1912T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478632
 2020-03-30 2020-06-30
 United Kingdom hCoV-19/England/NORT-295147/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3792T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479624
 2020-03-30 2020-06-30
 Russia hCoV-19/Russia/CRIE155506/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T C14408T G14515A A23403G GGG28881AAC CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_479629
 2020-03-30 2020-07-01
 Canada hCoV-19/Canada/NB-213/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T15354C C18877T A23403G G25563T ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_479632
 2020-03-30 2020-07-01
 Canada hCoV-19/Canada/NB-216/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2210T C3037T C3792T C6255T T6564C C14408T G18811A A23403G ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_479633
 2020-03-30 2020-07-01
 Canada hCoV-19/Canada/NB-217/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T15354C C18877T A23403G G25563T ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_479643
 2020-03-30 2020-07-01
 Canada hCoV-19/Canada/NB-228/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G15732T T19143C A20268G A23403G ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_479996
 2020-03-30 2020-07-01
 Japan hCoV-19/Japan/PG-0321/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C313T C3037T G7133A C13011T C14408T C14599T A23403G C24642T G26730A GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_480014
 2020-03-30 2020-07-01
 Japan hCoV-19/Japan/PG-0342/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G C25688T C27684T GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480015
 2020-03-30 2020-07-01
 Japan hCoV-19/Japan/PG-0343/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T G4300T C14408T A23403G G25249T G25563C GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480016
 2020-03-30 2020-07-01
 Japan hCoV-19/Japan/PG-0344/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G GGG28881AAC TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_480021
 2020-03-30 2020-07-01
 Japan hCoV-19/Japan/PG-0349/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C9430T G9652T C14408T G22199T A23403G G24197T GGG28881AAC TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_480022
 2020-03-30 2020-07-01
 Japan hCoV-19/Japan/PG-0350/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G G26109T T26966A GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480074
 2020-03-30 2020-07-01
 Japan hCoV-19/Japan/PG-0405/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C313T C3037T C14408T A23403G GGG28881AAC AGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29799-

EPI_ISL_480075
 2020-03-30 2020-07-01
 Japan hCoV-19/Japan/PG-0406/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G GGG28881AAC TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_480076
 2020-03-30 2020-07-01
 Japan hCoV-19/Japan/PG-0407/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_480077
 2020-03-30 2020-07-01
 Japan hCoV-19/Japan/PG-0408/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACT1- C241T C313T C3037T C14408T A23403G T25488A C27923T GGG28881AAC TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_480078
 2020-03-30 2020-07-01
 Japan hCoV-19/Japan/PG-0409/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACT1- C241T C313T C3037T C14408T A23403G T25488A C27923T GGG28881AAC TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_480079
 2020-03-30 2020-07-01
 Japan hCoV-19/Japan/PG-0410/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G T25488A GGG28881AAC TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_480080
 2020-03-30 2020-07-01
 Japan hCoV-19/Japan/PG-0411/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACT1- C241T C313T C3037T C14408T A23403G T25488A GGG28881AAC TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_480108
 2020-03-30 2020-07-01
 Japan hCoV-19/Japan/PG-0443/2020
 ATTAAAGGTTTAT1- C241T C313T C3037T C14408T A23403G GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_480120
 2020-03-30 2020-07-01
 Japan hCoV-19/Japan/PG-0459/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G GGG28881AAC TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_480121
 2020-03-30 2020-07-01
 Japan hCoV-19/Japan/PG-0460/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480122
 2020-03-30 2020-07-01
 Japan hCoV-19/Japan/PG-0461/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTT1- C241T C313T C3037T C14408T A23403G GGG28881AAC TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_480123
 2020-03-30 2020-07-01
 Japan hCoV-19/Japan/PG-0462/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T C16751A A23403G GGG28881AAC TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_480124
 2020-03-30 2020-07-01
 Japan hCoV-19/Japan/PG-0463/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C313T C3037T C14408T A23403G GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_480196
 2020-03-30 2020-07-01
 Japan hCoV-19/Japan/PG-0539/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T GACGGTGCTTTACTT5810- C14408T A20268G G21097A A23403G G28985T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480198
 2020-03-30 2020-07-01
 Japan hCoV-19/Japan/PG-0542/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T C14408T A20268G A23403G TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_480303
 2020-03-30 2020-07-01
 Bulgaria hCoV-19/Bulgaria/23/2020
 C241T C1059T C1302T C3037T A3569G C14408T A23403G G25563T

EPI_ISL_480307
 2020-03-30 2020-07-01
 Bulgaria hCoV-19/Bulgaria/36/2020
 C241T C3037T G8371A C14408T C14877T A20268G A23403G T29765C

EPI_ISL_481656
 2020-03-30 2020-07-03
 Finland hCoV-19/Finland/30M6S2/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481657
 2020-03-30 2020-07-03
 Finland hCoV-19/Finland/30M75S3/2020
 C241T C1059T C1568T C3037T T8158C C14408T A23403G G24368T G25563T A29183G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481658
 2020-03-30 2020-07-03
 Finland hCoV-19/Finland/30M77S3/2020
 C241T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481659
 2020-03-30 2020-07-03
 Finland hCoV-19/Finland/30M80S3/2020
 C241T C3037T C6401T C14408T C16952T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481661
 2020-03-30 2020-07-03
 Finland hCoV-19/Finland/30M88S2/2020
 C241T C1059T C3037T A6519C T6523A C14408T G15907T A23403G G24368T G25563T G27163T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481662
 2020-03-30 2020-07-03
 Finland hCoV-19/Finland/30MA7S2/2020
 C241T C3037T C6401T G7553A C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481663
 2020-03-30 2020-07-03
 Finland hCoV-19/Finland/30MBS2/2020
 C241T C1059T C3037T C12242A C14408T A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481747
 2020-03-30 2020-07-03
 Canada hCoV-19/Canada/NB_249/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_482309
 2020-03-30 2020-07-03
 United States hCoV-19/USA/OR-PROV-025/2020
 G11083T C14805T G26144T

EPI_ISL_482452
 2020-03-30 2020-07-03
 United States hCoV-19/USA/OR-PROV-217/2020
 C9474T G11083T C14805T T24892C G26144T

EPI_ISL_482466
 2020-03-30 2020-07-03
 United States hCoV-19/USA/OR-PROV-231/2020
 T11C A2581C G11083T C14805T G26144T

EPI_ISL_483201
 2020-03-30 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0524-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T C16762T A23403G G25563T

EPI_ISL_483300
 2020-03-30 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0684-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T T12955C C14408T C16762T A23403G G25563T

EPI_ISL_483313
 2020-03-30 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0704-SAN/2020
 ATTAAAGG1- C241T C1059T C3037T T12955C C14408T C16762T A23403G G25563T

EPI_ISL_483316
 2020-03-30 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0707-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25563T G29553A

EPI_ISL_483318
 2020-03-30 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0711-SAN/2020
 C241T C1059T C3037T C6629T C14408T C23277T A23403G G25563T

EPI_ISL_483371
 2020-03-30 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0805-SAN/2020
 ATTAAAGGTTTATA1- C241T C1059T C3037T C14408T C16762T A23403G G25563T

EPI_ISL_483372
 2020-03-30 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0806-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C1059T C3037T T12955C C14408T C16762T A23403G G25563T

EPI_ISL_483373
 2020-03-30 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0809-SAN/2020
 ATTAAAGGT1- C241T C1059T C3037T C14408T G17014T A23403G G25563T

EPI_ISL_483374
 2020-03-30 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0810-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C15842T C16762T A23403G G25563T

EPI_ISL_483375
 2020-03-30 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0812-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C1059T C3037T C14408T G17014T A23403G G25563T

EPI_ISL_483377
 2020-03-30 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0815-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C1059T C1887T C3037T C14408T G21220T A23403G G25563T

EPI_ISL_483378
 2020-03-30 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0816-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G526T C1059T C3037T T3526C C14408T C16762T A23403G G25563T

EPI_ISL_483383
 2020-03-30 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0823-SAN/2020
 ATTA1- C241T C1059T C3037T C6629T C14408T C23277T A23403G G25563T

EPI_ISL_483425
 2020-03-30 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0939-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C401T C1059T C3037T C14408T C16762T A23403G G25563T

EPI_ISL_483435
 2020-03-30 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0976-SAN/2020
 ATTAAAGGTT1- C241T C1059T C3037T T12955C C14408T C16762T A23403G G25563T

EPI_ISL_483436
 2020-03-30 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0977-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C1059T C3037T C11671T C14408T A23403G G25563T

EPI_ISL_483446
 2020-03-30 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0990-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C2416T C3037T C14408T C17104T A23403G G25563T

EPI_ISL_483551
 2020-03-30 2020-07-07
 Bahrain hCoV-19/Bahrein/BAH-10/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C884T G1126T C1342T G1397A G8653T G11083T C12005T C22938T C28093T T28688C G29742T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_483553
 2020-03-30 2020-07-07
 Bahrain hCoV-19/Bahrein/BAH-12/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T G11230T T28144C G28167A G28878A G29742A GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_483711
 2020-03-30 2020-07-08
 Israel hCoV-19/Israel/n14285/2020
 C241T C1059T C3037T C5365T C14408T A20755C A23403G G25563T A28811G

EPI_ISL_484126
 2020-03-30 2020-07-08
 United Kingdom hCoV-19/England/GSTT-265DF38/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484152
 2020-03-30 2020-07-08
 United Kingdom hCoV-19/England/GSTT-265E0E9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484711
 2020-03-30 2020-07-08
 United States hCoV-19/USA/MI-UM-2006S000852/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C7869T C14408T A23403G G25563T C27005T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485922
 2020-03-30 2020-07-10
 United States hCoV-19/USA/CT-UW-2469/2020
 ATTAAA1- AACC34TTTA A39T C241T C3037T C6285T C14408T C18877T A23403G C25452T G25563T ACAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_485923
 2020-03-30 2020-07-10
 United States hCoV-19/USA/CT-UW-2475/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGAT1- C241T C1059T C3037T C14408T A23403G G25563T TG29867AR C29870A

EPI_ISL_485924
 2020-03-30 2020-07-10
 United States hCoV-19/USA/CT-UW-2481/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C241T C1059T C3037T C4331T C6026T C14408T A23403G G25563T C28836T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_485925
 2020-03-30 2020-07-10
 United States hCoV-19/USA/CT-UW-2488/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCT1- C241T C3037T G10265A C14408T G22343T A23403G GGG28881AAC AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_485981
 2020-03-30 2020-07-10
 United States hCoV-19/USA/WA-UW-2304/2020
 ATTAAAGGTT1- C36T C8782T T17009C C17747T A17858G C18060T C23673T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_485982
 2020-03-30 2020-07-10
 United States hCoV-19/USA/WA-UW-2305/2020
 ATTAAAGGTTTA1- AAC34TTT C8782T C11020T C17747T A17858G C18060T G21255C C26013T T28144C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_485986
 2020-03-30 2020-07-10
 United States hCoV-19/USA/WA-UW-2368/2020
 AT1GA A4T C36T C241T C1059T C3037T C10582T C14408T A23403G G25563T AAAAAAAAAAA29893-

EPI_ISL_485988
 2020-03-30 2020-07-10
 United States hCoV-19/USA/WA-UW-2377/2020
 ATT1-CC C5170T A6475C C8782T C16468T T17673C C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_485989
 2020-03-30 2020-07-10
 United States hCoV-19/USA/WA-UW-2382/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTG1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_485994
 2020-03-30 2020-07-10
 United States hCoV-19/USA/WA-UW-2526/2020
 A1G C8782T C17747T A17858G C18060T G21770T T27384C T28144C AAAAAAAAAAAAAAAA29888-

EPI_ISL_485995
 2020-03-30 2020-07-10
 United States hCoV-19/USA/WA-UW-2532/2020
 A1G A4G C36T C241T C1059T C3037T C14408T A23403G G24764T G25563T C29119T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_485996
 2020-03-30 2020-07-10
 United States hCoV-19/USA/WA-UW-2537/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A31T C36T C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_485997
 2020-03-30 2020-07-10
 United States hCoV-19/USA/WA-UW-2540/2020
 ATTAAA1- C241T C1059T C3037T C11224T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_485998
 2020-03-30 2020-07-10
 United States hCoV-19/USA/WA-UW-2551/2020
 T2C A4T C36T C241T C1059T C3037T C14408T A23403G G25563T G29553A AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_486000
 2020-03-30 2020-07-10
 United States hCoV-19/USA/WA-UW-2565/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- C36T C241T C1059T C3037T C14408T A23403G C25096T G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_486001
 2020-03-30 2020-07-10
 United States hCoV-19/USA/WA-UW-2566/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTG1- C241T C1059T C3037T G5017T C7945T CC14407TT A23403G G25563T G29864A TG29867AA C29870A

EPI_ISL_486004
 2020-03-30 2020-07-10
 United States hCoV-19/USA/WA-UW-2606/2020
 ATTAAAGGTTTATACCTT1- AAC34TTT C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_486008
 2020-03-30 2020-07-10
 United States hCoV-19/USA/WA-UW-2618/2020
 ATTAAAGGTTT1- C36T C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_486012
 2020-03-30 2020-07-10
 United States hCoV-19/USA/WA-UW-2665/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C1059T C3037T T8883C TT8885AA C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_486013
 2020-03-30 2020-07-10
 United States hCoV-19/USA/WA-UW-2670/2020
 ATTAAAG1- AAC34TTT C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_486017
 2020-03-30 2020-07-10
 United States hCoV-19/USA/WA-UW-2705/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGA1- C8782T C17747T A17858G C18060T T28144C C28887T C29409T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_486018
 2020-03-30 2020-07-10
 United States hCoV-19/USA/WA-UW-2725/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A31W C36T C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_486020
 2020-03-30 2020-07-10
 United States hCoV-19/USA/WA-UW-2730/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- C36T C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_486021
 2020-03-30 2020-07-10
 United States hCoV-19/USA/WA-UW-2732/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- AACC34TTTH C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_486815
 2020-03-30 2020-07-10
 Russia hCoV-19/Russia/CRIE159560/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T C14408T A23403G GGG28881AAC CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_486816
 2020-03-30 2020-07-10
 Russia hCoV-19/Russia/CRIE159875/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T C14408T C17745T A23403G A28043G G28727T GGG28881AAC CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_486817
 2020-03-30 2020-07-10
 Russia hCoV-19/Russia/CRIE159932/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T C14408T A23403G GGG28881AAC CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_486818
 2020-03-30 2020-07-10
 Russia hCoV-19/Russia/CRIE160277/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T C14408T A15192T A23403G GGG28881AAC G29527T CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_486819
 2020-03-30 2020-07-10
 Russia hCoV-19/Russia/CRIE160790/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T C14408T A23403G GGG28881AAC CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_487678
 2020-03-30 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2776/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3881G C14408T G17721R A23403G C25350T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487802
 2020-03-30 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2798/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5907T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487865
 2020-03-30 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5651/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3598C C8917T C14408T C21575T C22329Y A23403G C24919T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488404
 2020-03-30 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F969/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C96T C241T C3037T C4113T G11083T C14408T G14857T C16887T A23403G A25575C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488459
 2020-03-30 2020-07-14
 United Kingdom hCoV-19/England/NORT-2837A4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6606Y C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488469
 2020-03-30 2020-07-14
 United Kingdom hCoV-19/England/NORT-2832C1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C2091T G6446T G11083T C14805T T17247C T25202K T25932A G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488473
 2020-03-30 2020-07-14
 United Kingdom hCoV-19/England/NORT-2832EF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1350T A2480G C2558T C4534Y G11083T C14805T T25202K G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488494
 2020-03-30 2020-07-14
 United Kingdom hCoV-19/England/NORT-2952EA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27807Y G27996T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488503
 2020-03-30 2020-07-14
 United Kingdom hCoV-19/England/NORT-282E37/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G15243T C17439T A20268G A23403G T25202K C27920T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488521
 2020-03-30 2020-07-14
 United Kingdom hCoV-19/England/NORT-295E04/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G12849A C14408T A23403G T25202K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488548
 2020-03-30 2020-07-14
 United Kingdom hCoV-19/England/NORT-283188/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C340T C3037T C14408T A23403G G25437K C28706Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488551
 2020-03-30 2020-07-14
 United Kingdom hCoV-19/England/NORT-295341/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G27996T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488556
 2020-03-30 2020-07-14
 United Kingdom hCoV-19/England/NORT-2831B5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2869G C3037T C14408T G17278T A23403G GGG28881AAC C29095T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488578
 2020-03-30 2020-07-14
 United Kingdom hCoV-19/England/NORT-2831C4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T6691C G11083T C14805T T25202K G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488584
 2020-03-30 2020-07-14
 United Kingdom hCoV-19/England/NORT-295271/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G15243T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488601
 2020-03-30 2020-07-14
 United Kingdom hCoV-19/England/NORT-282F43/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T C18086T G26144T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488613
 2020-03-30 2020-07-14
 United Kingdom hCoV-19/England/NORT-295208/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T T25202K G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488616
 2020-03-30 2020-07-14
 United Kingdom hCoV-19/England/NORT-2957BE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4319R C14408T A23403G C25350T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488619
 2020-03-30 2020-07-14
 United Kingdom hCoV-19/England/NORT-295253/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C2091T A5608R G7393T A10323G G11083T C14805T T17247C G23876A G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488627
 2020-03-30 2020-07-14
 United Kingdom hCoV-19/England/NORT-2830F4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488635
 2020-03-30 2020-07-14
 United Kingdom hCoV-19/England/NORT-2951CF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G T25202K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488655
 2020-03-30 2020-07-14
 United Kingdom hCoV-19/England/NORT-283267/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C556Y A1515G C9223T G11083T C14805T T17247C T25202K G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488671
 2020-03-30 2020-07-14
 United Kingdom hCoV-19/England/NORT-2836D4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1687T C3037T C14408T C16859T A23403G T25202K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488695
 2020-03-30 2020-07-14
 United Kingdom hCoV-19/England/NORT-294F5D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G4300T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488704
 2020-03-30 2020-07-14
 United Kingdom hCoV-19/England/NORT-295ED7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16726Y A20268G A23403G T25202K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488706
 2020-03-30 2020-07-14
 United Kingdom hCoV-19/England/NORT-295192/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T2820C C5869T G11083T C11866T A12103G C14805T T25202K A25968G G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488713
 2020-03-30 2020-07-14
 United Kingdom hCoV-19/England/NORT-2831F1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1340Y C3037T C11758Y C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488730
 2020-03-30 2020-07-14
 United Kingdom hCoV-19/England/NORT-282FCB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3764A C14408T A23403G T25202K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488734
 2020-03-30 2020-07-14
 United Kingdom hCoV-19/England/NORT-28348F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A21405T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488887
 2020-03-30 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2797/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G160T C241T A1610G C3037T A13947T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488912
 2020-03-30 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2773/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T C21575T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488926
 2020-03-30 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2799/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3881G C14408T A20465R A23403G C25350T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488947
 2020-03-30 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2805/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A27660G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488955
 2020-03-30 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2792/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488964
 2020-03-30 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2793/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488985
 2020-03-30 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2781/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16289T G19009T A23403G C24213G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488997
 2020-03-30 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2787/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1111R C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489003
 2020-03-30 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2785/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11417K C14408T C16289T T17394W CG21304AA G22927T A23403G G25429T C29679T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489015
 2020-03-30 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2795/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489026
 2020-03-30 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2804/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C14408T A23403G G27214T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489033
 2020-03-30 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2812/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T G29212A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489039
 2020-03-30 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2810/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4999T C13730T C14408T C19113T T21752C A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489060
 2020-03-30 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2801/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16289T CG21304AA A23403G G25429T C29679T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489994
 2020-03-30 2020-07-15
 Malaysia hCoV-19/Malaysia/IMR-WC9185/2020
 ATTAAAGGTTTA1- G1467A C6312A G11083T C13730T A14226G T23926C C23929T A25576G C28311T AAAAAAAAAAAAAAAAA29887-

EPI_ISL_491134
 2020-03-30 2020-07-16
 Oman hCoV-19/Oman/6991/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T G4255T C14408T T18083C A20355G A23403G C25702T A26530G TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_491917 MT776411
 2020-03-30 2020-07-17
 United States SARS-CoV-2/human/USA/VA_NIDDL_2783/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6196T C14408T A23403G T26048C T27299C GGG28881AAC T29148C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491918 MT776412
 2020-03-30 2020-07-17
 United States SARS-CoV-2/human/USA/VA_NIDDL_2791/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1917T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491919 MT776413
 2020-03-30 2020-07-17
 United States SARS-CoV-2/human/USA/VA_NIDDL_2809/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A C1926T G2891A C7011T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492129
 2020-03-30 2020-07-20
 Australia hCoV-19/Australia/SAP194/2020
 ATTA1- T1368C C6990T G11083T C14805T C20736T C23707T G26144T

EPI_ISL_492130
 2020-03-30 2020-07-20
 Australia hCoV-19/Australia/SAP197/2020
 ATTA1- C241T G1319A C3037T C8389T C11195T C14408T C21707T A23403G G25563T A25616G

EPI_ISL_492149
 2020-03-30 2020-07-20
 Australia hCoV-19/Australia/SAP384/2020
 ATTA1- C4540T C8782T T9477A C13584T C14805T G25979T T28144C C28311T C28657T C28863T

EPI_ISL_493207
 2020-03-30 2020-07-21
 Taiwan hCoV-19/Taiwan/NCKUH-014/2020
 ATTAAAGGTTTAT1- G11083T A13875G C14805T T17247C T18837C G26144T C27970G C29627T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873T

EPI_ISL_494286
 2020-03-30 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-1687B5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C16551Y A23403G GGG28881AAC AAAAAAAA29896-

EPI_ISL_495594
 2020-03-30 2020-07-23
 United States hCoV-19/USA/MI-UM-2006S005725/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_495597
 2020-03-30 2020-07-23
 United States hCoV-19/USA/MN-MDH-1298/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C6388T C8782T C17747T A17858G C18060T C21914T A24694T T28144C G28812T TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_497811
 2020-03-30 2020-07-25
 China hCoV-19/Hong Kong/HKU-200723-044/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G5230T C11339T C14408T C17010T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_497821
 2020-03-30 2020-07-25
 China hCoV-19/Hong Kong/HKU-200723-054/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T A12424G C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498156
 2020-03-30 2020-07-26
 Colombia hCoV-19/Colombia/88712/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498157
 2020-03-30 2020-07-26
 Colombia hCoV-19/Colombia/88859/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498161
 2020-03-30 2020-07-27
 Colombia hCoV-19/Colombia/94411/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G G25563T C29363T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498162
 2020-03-30 2020-07-27
 Colombia hCoV-19/Colombia/94679/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T9477A C14805T G25979T C26681T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501168
 2020-03-30 2020-07-30
 United States hCoV-19/USA/TX-GCID-192000159/2020
 A1G T3A C241T C1059T C3037T C10188T C14408T A23403G T24982C G25563T C27964T A29881G A29883G A29903-

EPI_ISL_501201
 2020-03-30 2020-07-31
 Malaysia hCoV-19/Malaysia/3133/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C6312A G11083T C13730T C15216T C19524T C23929T C28311T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_501202
 2020-03-30 2020-07-31
 Malaysia hCoV-19/Malaysia/3145/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- A30G G1111A C6312A T7621C G11083T C13730T C21627T C23929T C25549T C28311T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_501203
 2020-03-30 2020-07-31
 Malaysia hCoV-19/Malaysia/3321/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C6312A T7621C G11083T C13730T C23929T C28311T G29260C A29285T

EPI_ISL_501204
 2020-03-30 2020-07-31
 Malaysia hCoV-19/Malaysia/3479/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T C20759T A23403G C28253T GGG28881AAC T28978A

EPI_ISL_501205
 2020-03-30 2020-07-31
 Malaysia hCoV-19/Malaysia/3499/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C6312A T7621C G11083T C13730T C23929T C28311T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_501628
 2020-03-30 2020-07-31
 United Kingdom hCoV-19/England/EKHU-260EFCD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G23282T A23403G C27494Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_506986
 2020-03-30 2020-08-02
 South Korea hCoV-19/Korea/KCDC2192/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- G5572T G11083T C14805T G16935T G26144T G27441T G28580T

EPI_ISL_507013 MT820464
 2020-03-30 2020-07-30
 Saudi Arabia SARS-CoV-2/human/SAU/KAIMRC07/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C14408T C18877T A23403G G25563T C26735T TATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29832-

EPI_ISL_507078
 2020-03-30 2020-08-03
 United Kingdom hCoV-19/England/LOND-124D2B1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1473A C3037T C14408T A23403G C29739T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_507898
 2020-03-30 2020-08-03
 United States hCoV-19/USA/MI-MDHHS-SC21122/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T C3037T G4720A C14408T A23403G G25563T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_507906
 2020-03-30 2020-08-03
 United States hCoV-19/USA/MI-MDHHS-SC21130/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C1059T C3037T A9873R C14408T A23403G G25563T C26110Y G28230K ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_507910
 2020-03-30 2020-08-03
 United States hCoV-19/USA/MI-MDHHS-SC21134/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C14408T A23403G G25563T G29000R ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_507911
 2020-03-30 2020-08-03
 United States hCoV-19/USA/MI-MDHHS-SC21135/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C1059T C3037T G7756T C14408T A23403G G25563T TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_507912
 2020-03-30 2020-08-03
 United States hCoV-19/USA/MI-MDHHS-SC21136/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- T490A G922A C3177T C8782T T18736C C24034T T26729C G28077C T28144C A29700G TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_507915
 2020-03-30 2020-08-03
 United States hCoV-19/USA/MI-MDHHS-SC21139/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T G278R C1059T C3037T C11758T G13415T C14408T C16726T A23403G G25563T ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_508141
 2020-03-30 2020-08-04
 Australia hCoV-19/Australia/SAP451/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- G2891A C10741T A23403G T24364C A27669G T29233C

EPI_ISL_508338
 2020-03-30 2020-08-04
 India hCoV-19/India/IK1/2020
 AT1- C241T C3037T C14408T C15495T A23403G G25690T G28221T G29557T G29868A

EPI_ISL_508349
 2020-03-30 2020-08-04
 India hCoV-19/India/IK2/2020
 C241T C3037T G14131A C14408T A23403G G28221T G29868A

EPI_ISL_508908
 2020-03-30 2020-08-04
 France hCoV-19/France/ARA16322/2020
 ATTAAAGGTTT1- C241T C3037T C14408T C14599T C15324T T19061C A23403G AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_508958
 2020-03-30 2020-08-04
 France hCoV-19/France/ARA17177/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTT1- C241T C3037T G10318T C14408T G16414T T19839C A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_508987
 2020-03-30 2020-08-04
 France hCoV-19/France/ARA16665/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C14408T C16952T A23403G G25563T G27289T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_509010
 2020-03-30 2020-08-04
 France hCoV-19/France/ARA02052/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATC1- G91A C241T C3037T G11083T C14408T C15324T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_509012
 2020-03-30 2020-08-04
 France hCoV-19/France/ARA17181/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C3037T C5348T C8106T C14408T T22897G A23403G G25563T G25839T C28528T G29734C AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_509070
 2020-03-30 2020-08-05
 United States hCoV-19/USA/OR-OHSU-0193/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A4236G G11083T C14805T T25655C G26144T GCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29783-

EPI_ISL_509765 MT846469
 2020-03-30 2020-08-05
 United States SARS-CoV-2/human/USA/FL-BPHL-0707/2020
 ATTA1- C241T C1059T C3037T A4386G C7113T C10319T C14408T A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_509766 MT846470
 2020-03-30 2020-08-05
 United States SARS-CoV-2/human/USA/FL-BPHL-0708/2020
 ATT1- C241T C1059T C3037T A4386G C7113T C10319T C14408T A23403G G25563T C27964T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_509771 MT846475
 2020-03-30 2020-08-05
 United States SARS-CoV-2/human/USA/FL-BPHL-0713/2020
 ATTA1- C241T C1059T C3037T C14408T A23403G G25471C G25563T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_510818
 2020-03-30 2020-08-07
 Sweden hCoV-19/Sweden/20-50564/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_510944
 2020-03-30 2020-08-07
 Portugal hCoV-19/Portugal/PT0685/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T G11083T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511191
 2020-03-30 2020-08-07
 Portugal hCoV-19/Portugal/PT1230/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T T505C C3037T C3261T C14408T A15984T C20946T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511375
 2020-03-30 2020-08-07
 Portugal hCoV-19/Portugal/PT1416/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T C3924T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511395
 2020-03-30 2020-08-07
 Portugal hCoV-19/Portugal/PT1436/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G C25339T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511407
 2020-03-30 2020-08-07
 Portugal hCoV-19/Portugal/PT1448/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511414
 2020-03-30 2020-08-07
 Portugal hCoV-19/Portugal/PT1455/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511415
 2020-03-30 2020-08-07
 Portugal hCoV-19/Portugal/PT1456/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T A6308G C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511422
 2020-03-30 2020-08-07
 Portugal hCoV-19/Portugal/PT1463/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC G29777T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511436
 2020-03-30 2020-08-07
 Portugal hCoV-19/Portugal/PT1477/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G C25339T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511439
 2020-03-30 2020-08-07
 Portugal hCoV-19/Portugal/PT1480/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C1346A C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511442
 2020-03-30 2020-08-07
 Portugal hCoV-19/Portugal/PT1483/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3140T C13059T C14408T G21641A A23403G G24077T C29555T G29742T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511461
 2020-03-30 2020-08-07
 Portugal hCoV-19/Portugal/PT1502/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511526
 2020-03-30 2020-08-08
 Portugal hCoV-19/Portugal/PT0977/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C14408T C14786T G16935T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511527
 2020-03-30 2020-08-08
 Portugal hCoV-19/Portugal/PT0978/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T A6248C T10561C G14268A C14408T A20268G G22336C A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511657
 2020-03-30 2020-08-08
 Portugal hCoV-19/Portugal/PT1110/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C10969T C14408T G15982A C16887T A23403G G25362T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511665
 2020-03-30 2020-08-08
 Portugal hCoV-19/Portugal/PT1118/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T AATAGTGTCCCTTGGGATACTATA6656- G11083T C14408T A23403G G24077T C27527T C29218T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511667
 2020-03-30 2020-08-08
 Portugal hCoV-19/Portugal/PT1120/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C1514T C3037T C3177T C14408T T15978C A16725G A23403G TTAATCCAGTAATGGAACCAA26159- C26885T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511670
 2020-03-30 2020-08-08
 Portugal hCoV-19/Portugal/PT1123/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T C20384T A23403G A27751T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511748
 2020-03-30 2020-08-08
 Portugal hCoV-19/Portugal/PT1205/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3140T C14408T A23403G G24077T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_512491
 2020-03-30 2020-08-11
 United Kingdom hCoV-19/Wales/PHWC-16965D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C6990T C14408T A23403G G25650T C29137T C29200T

EPI_ISL_512811 MT872497
 2020-03-30 2020-08-11
 Sierra Leone SARS-CoV-2/human/SLE/KGH-G-8548/2020
 ATTAAAG1- C241T C1059T C3037T G4454T C14408T A20755C A23403G G25563T

EPI_ISL_513876 MW036086
 2020-03-30 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2472/2020
 C8782T C17747T A17858G C18060T G20002T G26567A T28144C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_514314
 2020-03-30 2020-08-16
 Israel hCoV-19/Israel/CVL-n14285/2020
 C241T C1059T C3037T C5365T C14408T A20755C A23403G G25563T A28811G

EPI_ISL_514652 MT892999
 2020-03-30 2020-08-17
 United States SARS-CoV-2/human/USA/MN-MDH-1433/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C3037T C11224T C14408T C15654T A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_515271
 2020-03-30 2020-08-18
 United States hCoV-19/USA/WA-UW-4563/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGT1- C241T C1059T C3037T C14408T A23403G G25563T G29553A GCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29742-

EPI_ISL_515344
 2020-03-30 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0062/2020
 ATTAAA1- C241T C379A C1059T C3037T CC14407TT A23403G G25563T

EPI_ISL_515520
 2020-03-30 2020-08-19
 Brazil hCoV-19/Brazil/SP-118/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C2370T C3037T C12053T C14408T A23403G G25088T C26822T GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_515907
 2020-03-30 2020-08-20
 United States hCoV-19/USA/CA-CDPH014/2020
 ATTAAAGGTTT1- C241T GTT669- C1059T C3037T C14408T C18457T A23403G C25487T G25563T C27964T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_516361
 2020-03-30 2020-08-20
 United States hCoV-19/USA/MI-MDHHS-SC21634/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C1059T C3037T C4423T C14408T A23403G G25563T TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_516362
 2020-03-30 2020-08-20
 United States hCoV-19/USA/MI-MDHHS-SC21635/2020
 ATTAAAGGTTTA1- C241T C1059T A2465C C3037T C14408T A23403G C24381T G25563T TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_516376
 2020-03-30 2020-08-20
 United States hCoV-19/USA/MI-MDHHS-SC21649/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C1059T C3037T C14408T G23236T A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_518899 MT920039
 2020-03-30 2020-08-25
 United States SARS-CoV-2/human/USA/MN-MDH-1506/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C313T C3037T A11348G C14408T A23403G A23848G GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_520721
 2020-03-30 2020-08-25
 United Arab Emirates hCoV-19/United Arab Emirates/L920632662/2020
 C241T C3037T C7765T T11205G C14408T A20268G A23403G T28334C G29734C

EPI_ISL_520722
 2020-03-30 2020-08-25
 United Arab Emirates hCoV-19/United Arab Emirates/L920632696/2020
 C241T C3037T C14408T C15654T A21081G A23403G GGG28881AAC

EPI_ISL_520723
 2020-03-30 2020-08-25
 United Arab Emirates hCoV-19/United Arab Emirates/L920633045/2020
 C241T C3037T C14408T C15656T A23403G G28077T GGG28881AAC G29734C

EPI_ISL_520724
 2020-03-30 2020-08-25
 United Arab Emirates hCoV-19/United Arab Emirates/L920633058/2020
 C241T C3037T A4687G T7171C C14408T A23403G C27002T GGG28881AAC C29095T

EPI_ISL_520725
 2020-03-30 2020-08-25
 United Arab Emirates hCoV-19/United Arab Emirates/L920633304/2020
 C241T A2514G C3037T C3704A C7851T C12085T C14408T G15982A G18880T G23311T A23403G A24170G GGG28881AAC C29025T CAC29730-

EPI_ISL_523505
 2020-03-30 2020-08-26
 Netherlands hCoV-19/Netherlands/un-EMC-749/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T13006C C14408T G20433T A23403G G25563T C25688T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523944
 2020-03-30 2020-08-27
 Germany hCoV-19/Germany/NW-73/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C527T G1440A G2891A C19547T C27625T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524494
 2020-03-30 2020-08-28
 United Kingdom hCoV-19/Scotland/GCVR-170DA9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G27281T G28851T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524500
 2020-03-30 2020-08-28
 United Kingdom hCoV-19/Scotland/GCVR-171B62/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2399T C3037T A11430G C14408T A23403G GGG28881AAC TCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29685-

EPI_ISL_524536
 2020-03-30 2020-08-28
 United Kingdom hCoV-19/Scotland/GCVR-171E1E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C20283T C21034T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524550
 2020-03-30 2020-08-28
 United Kingdom hCoV-19/Scotland/GCVR-171CE7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1830G C3037T C10798A C13862T C14408T A23403G C26912Y C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524552
 2020-03-30 2020-08-28
 United Kingdom hCoV-19/Scotland/GCVR-1715DD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525638
 2020-03-30 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-33279-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T T29244C TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_525639
 2020-03-30 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-33281-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G A25505C GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_525640
 2020-03-30 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-33282-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C12400T C14408T C21646T A23403G G25563T G28812T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_525641
 2020-03-30 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-33283-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C3253T C14408T A23403G G25563T TGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29840-

EPI_ISL_525642
 2020-03-30 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-33284-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_527862
 2020-03-30 2020-09-05
 Brazil hCoV-19/Brazil/SP-294/2020
 ATTAAAGGTTTATACCTTCCCAG1- G24A C241T C3037T C6196T C12053T C14408T A23403G G25088T GGG28881AAC A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_527881
 2020-03-30 2020-09-05
 Nigeria hCoV-19/Nigeria/ED20-CV162/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C3037T C5654T C14408T C20371T A23403G G28001T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_529964
 2020-03-30 2020-09-10
 Indonesia hCoV-19/Indonesia/JI-ITD-1273V/2020
 ATTAAAGGT1- C1912T G6532T G17411A G22616T

EPI_ISL_530051
 2020-03-30 2020-09-10
 Spain hCoV-19/Spain/MD-LP48/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2305T C3037T C14408T A20268G C21691T A23403G ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_534815
 2020-03-30 2020-09-14
 United Kingdom hCoV-19/England/OXON-B2DD9/2020
 C241T C1059T C3037T C14408T A22798G A23403G C23896T G25563T

EPI_ISL_534840
 2020-03-30 2020-09-14
 United Kingdom hCoV-19/England/OXON-B31AF/2020
 C241T C3037T C10818T C14408T A23403G G24781T GGG28881AAC A29896R AAAA29900M

EPI_ISL_534851
 2020-03-30 2020-09-14
 United Kingdom hCoV-19/England/OXON-B3321/2020
 C241T C3037T C14408T A23403G G24781T GGG28881AAC G29706T

EPI_ISL_534882
 2020-03-30 2020-09-14
 United Kingdom hCoV-19/England/OXON-B3707/2020
 C241T C1059T C3037T C14408T G18781T A23403G G25563T TA25663CT

EPI_ISL_536336
 2020-03-30 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00242858/2020
 ATTA1- C241T C1059T C1912T C3037T C14408T A23403G G25563T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_536338
 2020-03-30 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00242878/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C1059T C3037T C11916T C14408T C18998T G21786A A23403G G25563T G28362K G29540A CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_536339
 2020-03-30 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00242891/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T C14408T A23403G G28086R T28088W GGG28881AAC C29247T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_536340
 2020-03-30 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00242900/2020
 ATTAAAGGTT1- C241T C3037T C4965T A8072G C14408T A16011G A21213G A23403G GGG28881AAC GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_536342
 2020-03-30 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00242918/2020
 ATTAAAGGT1- C241T C1059T C3037T C14408T C18326T C19718T A23403G C24896T G25217T G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_536344
 2020-03-30 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00243024/2020
 ATTAAA1- C241T C1059T C3037T C14408T C18252Y A23403G G25563T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_536349
 2020-03-30 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00243118/2020
 ATTAAAGGTTTATACCT1- C241T C1059T C3037T C14408T A23403G G25563T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_536350
 2020-03-30 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00243222/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T C14408T G17964A A23403G C23575T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_536351
 2020-03-30 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00243245/2020
 AT1- C241T C1059T C3037T C14408T A23403G G25563T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_536352
 2020-03-30 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00243257/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C2416T C3037T C14408T A23403G C25275T G25563T C26408T G28086R T28088W CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_536354
 2020-03-30 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00243313/2020
 ATTAAAG1- C241T C1059T C3037T C14408T C18060T A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_536355
 2020-03-30 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00243317/2020
 ATTAAAGG1- C241T C1059T C3037T C14408T C18060T A23403G G25563T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_536356
 2020-03-30 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00243323/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C3037T C14408T C18060T A23403G G25563T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_536357
 2020-03-30 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00243325/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C3037T C14408T C18060T A23403G G25563T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_536358
 2020-03-30 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00243328/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C3037T C14408T C18060T A23403G G25563T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_536359
 2020-03-30 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00243345/2020
 ATTAA1- T10W C241T C1059T C3037T C14408T C18060T A23403G G25563T TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_536360
 2020-03-30 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00243347/2020
 ATTA1- C241T C3037T C14408T G20373T A23403G T27299C GGG28881AAC T29148C CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_536362
 2020-03-30 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00243460/2020
 ATTAAAGGTTTATA1- C241T C1059T C3037T C14025M C14408T C15277Y C18060T A23403G G25563T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_536363
 2020-03-30 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00243560/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- T490A C3177T C8782T A11600G G16754A G17761K T18736C C24034T T26729C C27635T C27881T G28077C T28144C A29567C A29700G TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_536367
 2020-03-30 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00243608/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C14408T C15324T A23403G C25433T TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_536375
 2020-03-30 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00243746/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C313T C3037T C14408T A23403G C25904T GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_537494
 2020-03-30 2020-09-16
 United States hCoV-19/USA/CA-UCLA-155/2020
 ATTAAAGGTTT1- C241T C379A C1059T C3037T T5527G C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_537495
 2020-03-30 2020-09-16
 United States hCoV-19/USA/CA-UCLA-156/2020
 ATTAAAGGTTTAT1- C2676T C8782T C16646T C21575T A22606T G23755T T28144C G28878A G29742A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_537716
 2020-03-30 2020-09-16
 Spain hCoV-19/Spain/CN-CSIC-97006508/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C3037T C14408T A20268G A23403G G29734C CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_538333
 2020-03-30 2020-09-16
 Canada hCoV-19/Canada/ON-OICR-SLB2802/2020
 ATTAAAGGTTTATA1- C241T C1059T C3037T C14408T A23403G G25563T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_538335
 2020-03-30 2020-09-16
 Canada hCoV-19/Canada/ON-OICR-SLB2804/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T A11782R C14408T A23403G G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_538787
 2020-03-30 2020-09-17
 United Kingdom hCoV-19/England/LEED-2AA22E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- G2100T G2258A G28632S CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538799
 2020-03-30 2020-09-17
 United Kingdom hCoV-19/England/LEED-2AA30D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C2558T C7768T G11083T C14805T C17104T G26144T G28851T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538852
 2020-03-30 2020-09-17
 United Kingdom hCoV-19/England/LEED-2AA437/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T C14408T G21724T C22326T A23403G G23587C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538869
 2020-03-30 2020-09-17
 United Kingdom hCoV-19/England/LEED-2AA297/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A C10507T G18180A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538906
 2020-03-30 2020-09-17
 United Kingdom hCoV-19/England/LEED-2AA2B5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C103Y ATG1605- G2100T G2258A G19679K C21638T G22289K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538932
 2020-03-30 2020-09-17
 United Kingdom hCoV-19/England/LEED-2AA1F4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T C14408T G21724T A23403G G23587C GGG28881AAC C29831T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538944
 2020-03-30 2020-09-17
 United Kingdom hCoV-19/England/LEED-2AA798/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G21624T C23191T A23403G GGG28881AAC C28969T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538995
 2020-03-30 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A83E1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539003
 2020-03-30 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A826C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G G24197T G25563T C26735T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539083
 2020-03-30 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A867F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G G24197T G25563T T26066C C26735T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539129
 2020-03-30 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A879A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539132
 2020-03-30 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8A46/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C3096T C4927T A10460G G11083T C14805T T17247G C20759T C25904Y G26144T C28760A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539158
 2020-03-30 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8509/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539178
 2020-03-30 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8E0E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C3602T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539211
 2020-03-30 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8E3B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A G13762T C14408T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539217
 2020-03-30 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8E2C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T T10453C C11195T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539299
 2020-03-30 2020-09-17
 Russia hCoV-19/Russia/MOW-CRIE-160158/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T A3962- C4334T C14408T A23403G G25217T GGG28881AAC CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_539310
 2020-03-30 2020-09-17
 Netherlands hCoV-19/env/Netherlands/NH-92721-N/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T493C C14408T A23403G ACAAGGCAGATGGGCTATATAAACGTTTTCGCTTTTCCGTTTACGATATATAGTCTACTCTTGTGCAGAATGAATTCTCGTAACTACATAGCACAAGTAGATGTAGTTAACTTTAATCTCACATAGCAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29549-

EPI_ISL_539313
 2020-03-30 2020-09-17
 Netherlands hCoV-19/env/Netherlands/FR-92719-I/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTG1- C241T G2527T C3037T C3373A C9733T A23403G GGG28881AAC TCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29685-

EPI_ISL_539314
 2020-03-30 2020-09-17
 Netherlands hCoV-19/env/Netherlands/FR-92719-N1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C3373A C9733T T13972G C14408T A23403G GGG28881AAC CAAGGCAGATGGGCTATATAAACGTTTTCGCTTTTCCGTTTACGATATATAGTCTACTCTTGTGCAGAATGAATTCTCGTAACTACATAGCACAAGTAGATGTAGTTAACTTTAATCTCACATAGCAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29550-

EPI_ISL_539325
 2020-03-30 2020-09-17
 Netherlands hCoV-19/env/Netherlands/NH-92723-N/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16017T C26735T ACAAGGCAGATGGGCTATATAAACGTTTTCGCTTTTCCGTTTACGATATATAGTCTACTCTTGTGCAGAATGAATTCTCGTAACTACATAGCACAAGTAGATGTAGTTAACTTTAATCTCACATAGCAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29549-

EPI_ISL_539776
 2020-03-30 2020-09-19
 Czech Republic hCoV-19/Czech Republic/NRL-5607/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G3371T T9115A C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541237
 2020-03-30 2020-09-21
 United States hCoV-19/USA/FL-BPHL-1227/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- T490A C3177T C8782T A9019G T13180C C16084T T18736C C24034T T26729C G28077C T28144C A29700G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_542795
 2020-03-30 2020-09-23
 United States hCoV-19/USA/TX-HMH-1726/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542803
 2020-03-30 2020-09-23
 United States hCoV-19/USA/TX-HMH-1736/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C6040T C8782T C8950T G12478A T18736C C24034T T26729C G28077C T28144C C28896G C29451T A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542805
 2020-03-30 2020-09-23
 United States hCoV-19/USA/TX-HMH-1738/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547474
 2020-03-30 2020-09-24
 Netherlands hCoV-19/Netherlands/LI-RIVM-10130/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6977A C7006T T11638C C14408T G22708T A23403G GGG28881AAC C29708T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547475
 2020-03-30 2020-09-24
 Netherlands hCoV-19/Netherlands/LI-RIVM-10131/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC T29128C G29751C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547493
 2020-03-30 2020-09-24
 Netherlands hCoV-19/Netherlands/NH-RIVM-10058/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T10397C C14408T A23403G A28779G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547517
 2020-03-30 2020-09-24
 Netherlands hCoV-19/Netherlands/UT-RIVM-10059/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC G28975A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547518
 2020-03-30 2020-09-24
 Netherlands hCoV-19/Netherlands/UT-RIVM-10060/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C11109T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549010
 2020-03-30 2020-09-28
 Netherlands hCoV-19/env/Netherlands/FR-92719-N2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAGATGGAGAGCCTTGTCCCTGGTTTCAACGAGAAAACACACGTCCAACTCAGTTTGCCTGTTTTACAGGTTCGCGACGTG1- C3373A A3778G A23403G ACAAGGCAGATGGGCTATATAAACGTTTTCGCTTTTCCGTTTACGATATATAGTCTACTCTTGTGCAGAATGAATTCTCGTAACTACATAGCACAAGTAGATGTAGTTAACTTTAATCTCACATAGCAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29549-

EPI_ISL_549014
 2020-03-30 2020-09-28
 Netherlands hCoV-19/env/Netherlands/NH-92722-I/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T G1338T G16690T A23403G CGCATTGGCATGGAAGTCACACCTTCGGGAACGTGGTTGACCTACACAGGTGCCATCAAATTGGATGACAAAGATCCAAATTTCAAAGATCAAGTCATTTTGCTGAATAAGCATATTGACGCATACAAAACATTCCCACCAACAGAGCCTAAAAAGGACAAAAAGAAGAAGGCTGATGAAACTCAAGCCTTACCGCAGAGACAGAAGAAACAGCAAACTGTGACTCTTCTTCCTGCTGCAGATTTGGATGATTTCTCCAAACAATTGCAACAATCCATGAGCAGTGCTGACTCAACTCAGGCCTAAACTCATGCAGACCACACAAGGCAGATGGGCTATATAAACGTTTTCGCTTTTCCGTTTACGATATATAGTCTACTCTTGTGCAGAATGAATTCTCGTAACTACATAGCACAAGTAGATGTAGTTAACTTTAATCTCACATAGCAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29228-

EPI_ISL_549015
 2020-03-30 2020-09-28
 Netherlands hCoV-19/env/Netherlands/NH-92722-N/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G331T C3037T C10525T C14408T A23403G G24521T GGG28881AAC ACAAGGCAGATGGGCTATATAAACGTTTTCGCTTTTCCGTTTACGATATATAGTCTACTCTTGTGCAGAATGAATTCTCGTAACTACATAGCACAAGTAGATGTAGTTAACTTTAATCTCACATAGCAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29549-

EPI_ISL_560570
 2020-03-30 2020-09-29
 France hCoV-19/France/CVL8265/2020
 ATTAAAGGTTTATACC1- A26- C28T C241T C3037T C14408T C21233T A23403G A23691G C24621T GGG28881AAC C29743A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_565956
 2020-03-30 2020-09-30
 United States hCoV-19/USA/MI-MDHHS-SC21895/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T C3037T C14408T C17474T C18877T A23403G G25563T TGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29840-

EPI_ISL_569412
 2020-03-30 2020-10-02
 France hCoV-19/France/IHU-0252/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T G1942T C2416T C3037T G3338T C14408T G15438T C21597T A23403G G25563T C25731T AGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29797-

EPI_ISL_569413
 2020-03-30 2020-10-02
 France hCoV-19/France/IHU-0254/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C313T C3037T C6286T G10262T C14408T C21622T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

MT293156
 2020-03-30 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW391/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- AACC34HTTH G578A C8782T C17747T A17858G C18060T A24694T C25207T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

MT293173
 2020-03-30 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW408/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGT1- G91B C241T C1059T C3037T C14408T A23403G G25563T G29553A -29904AAA

MT293175
 2020-03-30 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW410/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTG1- C241T C1059T C3037T C11916T C14408T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

MT345868
 2020-03-30 2020-04-14
 United States SARS-CoV-2/human/USA/CT-UW-4344/2020
 ATTAAAGGTTTATACCTTCCCA1- A31T C36T C241T C1059T C3037T C10851T C14408T A23403G G25563T -29904AAAAAAAA

MT345869
 2020-03-30 2020-04-14
 United States SARS-CoV-2/human/USA/CT-UW-4346/2020
 ATTAAA1- A31T AC35WT C241T C1059T C3037T C3140T T9995G C14408T C16260T A23403G G25563T C28821A -29904AAAAAAA

MT345870
 2020-03-30 2020-04-14
 United States SARS-CoV-2/human/USA/CT-UW-4347/2020
 ATTAAAGGTTTAT1- CCCAGGTAACAAACCAA19- C36T C241T C1059T C3037T C14408T TGG21294AAA A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

MT345873
 2020-03-30 2020-04-14
 United States SARS-CoV-2/human/USA/CT-UW-4366/2020
 ATTAAAGGTT1- A31T AAC34TTT C241T C1059T C3037T C11916T C13515T C14408T C18998T A23403G G25563T G29540A -29904AAAAAAAAAAAAAA

MT345874
 2020-03-30 2020-04-14
 United States SARS-CoV-2/human/USA/CT-UW-4372/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C36T C241T C1059T C3037T C3768T C10851T C14408T A23403G G25563T C25584T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

MT706212
 2020-03-30 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-92/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G15760A A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706214
 2020-03-30 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-94/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A3463G C11224T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706215
 2020-03-30 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-95/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11417T T14073C C14408T A23403G A23947G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706222
 2020-03-30 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-102/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4755T C8316T C14408T G15760A T20157C A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706225
 2020-03-30 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-105/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C11591T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706226
 2020-03-30 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-106/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16830T C16887T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706228
 2020-03-30 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-108/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3871T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706229
 2020-03-30 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-109/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706232
 2020-03-30 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-112/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11417T T14073C C14408T A23403G A23947G G28539T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706234
 2020-03-30 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-114/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A14330G C14408T A23403G T27299C A27989G GGG28881AAC T29148C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706236
 2020-03-30 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-116/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T G16381A C16428T T17877C C20316T G25500T C26124T T28144C G28878A G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706237
 2020-03-30 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-117/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T G16381A T17877C C20316T G25500T G26211T T28144C G28878A G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT731327
 2020-03-30 2020-07-08
 Morocco SARS-CoV-2/human/MAR/RMPS04/2020
 C241T C1684T C3037T G6404T C8208T C14408T C15324T G22363T A23403G C29362T

MT731468
 2020-03-30 2020-07-08
 Morocco SARS-CoV-2/human/MAR/RMPS-05/2020
 C241T C1059T C3037T C14408T A23403G G25563T

MT731746
 2020-03-30 2020-07-08
 Morocco SARS-CoV-2/howo sapiens/MAR/RMPS05/2020
 C241T C1059T C3037T C14408T A23403G G25563T

MT797769
 2020-03-30 2020-07-24
 United States SARS-CoV-2/human/USA/COVID20-0064/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- T490A C3177T C8782T C24034T T26729C G28077C T28144C A29700G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

MT810555
 2020-03-30 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0419-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A20268G A23403G T24076C C27630T C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810567
 2020-03-30 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0439-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T T1211G C3037T C14408T G15265A A23403G G24985T G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810572
 2020-03-30 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0447-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C4540T G4904T G5206T C14408T A23403G C24138T C25350T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810575
 2020-03-30 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0452-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A23403G C24374T C25350T C27503T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810578
 2020-03-30 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0457-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C4540T G4904T G5206T C14408T A23403G C24138T C24384T C25350T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810581
 2020-03-30 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0461-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C4540T G4904T G5206T C14408T A23403G C24138T C25350T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810926
 2020-03-30 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0190-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T G10360A C14408T A23403G G24757T A27938G GGG28881AAC CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811181
 2020-03-30 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0132-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C6629T C14408T C23277T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811218
 2020-03-30 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0524-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T C16762T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811313
 2020-03-30 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0684-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T T12955C C14408T C16762T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811326
 2020-03-30 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0704-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T T12955C C14408T C16762T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811329
 2020-03-30 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0707-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T A23403G G25563T G29553A CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811331
 2020-03-30 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0711-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C6629T C14408T C23277T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811383
 2020-03-30 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0805-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T C16762T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811384
 2020-03-30 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0806-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T T12955C C14408T C16762T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811385
 2020-03-30 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0809-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T G17014T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811386
 2020-03-30 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0810-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T C15842T C16762T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811387
 2020-03-30 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0812-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T G17014T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811389
 2020-03-30 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0815-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C1887T C3037T C14408T G21220T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811390
 2020-03-30 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0816-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- G526T C1059T C3037T T3526C C14408T C16762T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811394
 2020-03-30 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0823-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C6629T C14408T C23277T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811432
 2020-03-30 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0939-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C401T C1059T C3037T C14408T C16762T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811442
 2020-03-30 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0976-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T T12955C C14408T C16762T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811443
 2020-03-30 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0977-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C11671T C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811453
 2020-03-30 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0990-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C2416T C3037T C14408T C17104T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811664
 2020-03-30 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0150-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T G16622A A23403G G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT873418
 2020-03-30 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00014/2020
 G105T C241T C3037T C14408T C18877T A23403G G25563T

MT873442
 2020-03-30 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00015/2020
 G105T C241T C3037T C14408T C18877T A23403G G25563T

MW001232
 2020-03-30 2020-09-14
 United States SARS-CoV-2/human/USA/197-ETA/2020
 C241T C1059T C3037T C14408T G18255T G21986A A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MW008582
 2020-03-30 2020-09-15
 United States SARS-CoV-2/human/USA/GA-EHC-108D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- T490A C3177T C8782T C10029T T16157A C16260T T18736C TTTGGGTGTTTA21982- C24034T T26729C G28077C T28144C A29700G CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

MW008583
 2020-03-30 2020-09-15
 United States SARS-CoV-2/human/USA/GA-EHC-110F/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C1059T C3037T C11289T C14408T A23403G G25563T C27964T TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

MW008584
 2020-03-30 2020-09-15
 United States SARS-CoV-2/human/USA/GA-EHC-113J/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- T490A C3177T C6638T C8782T T18736C C24034T T26729C G28077C T28144C A29700G TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

MW023498
 2020-03-30 2020-09-21
 United States SARS-CoV-2/human/USA/FL-BPHL-1227/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- T490A C3177T C8782T A9019G T13180C C16084T T18736C C24034T T26729C G28077C T28144C A29700G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

NMDC60013208
 2020-03-30 2020-06-01
 China hCoV-19/Guangzhou/ID114/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T9172C A10948G C14408T A23403G G26730T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

NMDC60013236
 2020-03-30 2020-06-01
 China hCoV-19/Guangzhou/ID115/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C16616T C23260A A23403G G25563T TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

NMDC60013274
 2020-03-30 2020-06-01
 China hCoV-19/Guangzhou/ID112/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G4105T G11083T C14805T C23707T C24370T A25590T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417018
 2020-03-31 2020-03-23
 Belgium hCoV-19/Belgium/ULG-6670/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2113T C3037T C7765T C14408T C17690T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417019
 2020-03-31 2020-03-23
 Belgium hCoV-19/Belgium/ULG-6754/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4255T C13517T C14408T A23403G A26530G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421185
 2020-03-31 2020-04-07
 Belgium hCoV-19/Belgium/ULG-10006/2020
 C241T C3037T G11083T C14408T T15978C A23403G G24794T GGG28881AAC

EPI_ISL_421198
 2020-03-31 2020-04-07
 Belgium hCoV-19/Belgium/ULG-10024/2020
 C241T C3037T C7564T C14408T A23403G GGG28881AAC

EPI_ISL_421202
 2020-03-31 2020-04-07
 Belgium hCoV-19/Belgium/ULG-10028/2020
 G1440A G2891A C5144T

EPI_ISL_421203
 2020-03-31 2020-04-07
 Belgium hCoV-19/Belgium/ULG-10029/2020
 C241T A563T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_421206
 2020-03-31 2020-04-07
 Belgium hCoV-19/Belgium/ULG-10032/2020
 G1440A G2891A C5144T C9561T C21622T

EPI_ISL_421207
 2020-03-31 2020-04-07
 Belgium hCoV-19/Belgium/ULG-10033/2020
 C241T C3037T C14408T C15277T C15324T A23403G G25249T C25797T

EPI_ISL_421210
 2020-03-31 2020-04-07
 Belgium hCoV-19/Belgium/ULG-10043/2020
 C241T C3037T G11083T C14408T T15978C A23403G G24794T GGG28881AAC

EPI_ISL_421932
 2020-03-31 2020-04-09
 United Kingdom hCoV-19/England/20144013504/2020
 C241T C3037T C14408T C15324T C18904T A23403G G25606K G25687T

EPI_ISL_421935
 2020-03-31 2020-04-09
 United Kingdom hCoV-19/England/20144014604/2020
 C241T C3037T C14408T T22378Y A23403G GGG28881AAC

EPI_ISL_421946
 2020-03-31 2020-04-09
 United Kingdom hCoV-19/England/20144037304/2020
 C241T C3037T C14408T T19839C A23403G GGG28881AAC

EPI_ISL_421948
 2020-03-31 2020-04-09
 United Kingdom hCoV-19/England/20144049404/2020
 C241T C313T C3037T C14408T T19680W A23403G GGG28881AAC G28960T

EPI_ISL_422105
 2020-03-31 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-26F25/2020
 C241T C3037T C14408T A23403G

EPI_ISL_422431
 2020-03-31 2020-04-10
 Singapore hCoV-19/Singapore/38/2020
 ATTAAA1- C241T C3037T G7393T C14408T G20292R A23403G A24520R GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_422432
 2020-03-31 2020-04-10
 Singapore hCoV-19/Singapore/39/2020
 ATTAAAGGTT1- C241T C3037T T6430C G7393T C14408T A23403G GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_422433
 2020-03-31 2020-04-10
 Singapore hCoV-19/Singapore/40/2020
 ATTAAAGGTTTA1- GC6309AA C6312A G11083T C13730T G15672K C19524T C23929T T27588A C28311T AAAAAAAAAAAA29892-

EPI_ISL_422434
 2020-03-31 2020-04-10
 Singapore hCoV-19/Singapore/41/2020
 ATTA1- C6310A C6312A G11083T C13730T C19524T C23929T T27588A C28311T AAAAAAAAAAAA29892-

EPI_ISL_422435
 2020-03-31 2020-04-10
 Singapore hCoV-19/Singapore/42/2020
 ATTAAA1- GC6309RA C6312A G11083T C13730T C19524T C21575Y C23929T T27588A C28311T AAAAAAAAAAAA29892-

EPI_ISL_422453
 2020-03-31 2020-04-10
 United States hCoV-19/USA/WI-GMF-00498/2020
 C241T C1059T C3037T C14408T A23403G C23731T G25563T TTA27795-

EPI_ISL_422587 LR878018
 2020-03-31 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_276/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T C17125T T17247C G26144T G27201T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422588 LR878020
 2020-03-31 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_277/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C17304T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422591 LR878023
 2020-03-31 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_282/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422592 LR878024
 2020-03-31 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_283/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1997T C3037T C14408T A23403G G29422T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422593 LR878021
 2020-03-31 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_284/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422594 LR878033
 2020-03-31 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_285/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3330T C14408T G20275A A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422595 LR878029
 2020-03-31 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_286/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C900T C3037T C14408T C20031A A23403G C27046T GGG28881AAC C29750T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422597 LR878037
 2020-03-31 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_288/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G20275A A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422598 LR878031
 2020-03-31 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_289/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T10561C C12085T C14408T C15324T A23173G A23403G C28844T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422599 LR878035
 2020-03-31 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_290/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3393T C14408T G20275A C21575T A23403G C27092T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422628 LR878028
 2020-03-31 2020-04-11
 Netherlands hCoV-19/Netherlands/ZuidHolland_100/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T10561C C14408T C15324T A23403G C28844T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422629 LR878034
 2020-03-31 2020-04-11
 Netherlands hCoV-19/Netherlands/ZuidHolland_101/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18788T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422631 LR878012
 2020-03-31 2020-04-11
 Netherlands hCoV-19/Netherlands/ZuidHolland_95/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- C7318T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422633 LR878019
 2020-03-31 2020-04-11
 Netherlands hCoV-19/Netherlands/ZuidHolland_97/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T8862A C14408T G20275A A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422634 LR878027
 2020-03-31 2020-04-11
 Netherlands hCoV-19/Netherlands/ZuidHolland_98/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2527A C3037T C14408T A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422635 LR878025
 2020-03-31 2020-04-11
 Netherlands hCoV-19/Netherlands/ZuidHolland_99/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12815T C14408T C18788T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_423448
 2020-03-31 2020-04-12
 United Kingdom hCoV-19/England/20142023704/2020
 C241T G2164A C3037T C14408T C22326T A23403G GGG28881AAC

EPI_ISL_423472
 2020-03-31 2020-04-12
 United Kingdom hCoV-19/England/20144000204/2020
 C21T C241T C3037T C4002T G10097A C13536T C14184T C14408T C15738Y C21058T A23403G C23731T GGG28881AAC

EPI_ISL_423473
 2020-03-31 2020-04-12
 United Kingdom hCoV-19/England/20144000404/2020
 T10C C241T C3037T C14408T C21658Y A23403G C27046T GGG28881AAC

EPI_ISL_423479
 2020-03-31 2020-04-12
 United Kingdom hCoV-19/England/20144002904/2020
 C241T C3037T C14408T G21204T A23403G GGG28881AAC

EPI_ISL_423481
 2020-03-31 2020-04-12
 United Kingdom hCoV-19/England/20144003604/2020
 C241T C3037T C6487T C12138T C14408T T18768C C19983Y A23403G GGG28881AAC

EPI_ISL_423486
 2020-03-31 2020-04-12
 United Kingdom hCoV-19/England/20144004504/2020
 C1514T ATG1605- T12027C C20270T C23557Y G28179A A29683T

EPI_ISL_423487
 2020-03-31 2020-04-12
 United Kingdom hCoV-19/England/20144004704/2020
 C241T C3037T C3411T C11681T C14408T A23403G C25350T C27005T

EPI_ISL_423488
 2020-03-31 2020-04-12
 United Kingdom hCoV-19/England/20144004804/2020
 C241T G2164A C2306T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_423493
 2020-03-31 2020-04-12
 United Kingdom hCoV-19/England/20144006304/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_423497
 2020-03-31 2020-04-12
 United Kingdom hCoV-19/England/20144007604/2020
 C241T C3037T C14408T G22638A A23403G GGG28881AAC

EPI_ISL_423500
 2020-03-31 2020-04-12
 United Kingdom hCoV-19/England/20144008304/2020
 C241T C2724T C3037T C5822T C14408T C15763T A23403G A28811T GGG28881AAC

EPI_ISL_423502
 2020-03-31 2020-04-12
 United Kingdom hCoV-19/England/20144008904/2020
 C241T G2164A C3037T C14408T A23403G GGG28881AAC

EPI_ISL_423503
 2020-03-31 2020-04-12
 United Kingdom hCoV-19/England/20144009004/2020
 C241T G2164A C3037T C14408T C22353Y A23403G GGG28881AAC

EPI_ISL_423508
 2020-03-31 2020-04-12
 United Kingdom hCoV-19/England/20144013704/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_423509
 2020-03-31 2020-04-12
 United Kingdom hCoV-19/England/20144014504/2020
 A2480G C2558T A4015T G9111A C10232T G11083T C14805T G26144T

EPI_ISL_423535
 2020-03-31 2020-04-12
 United Kingdom hCoV-19/England/20144036004/2020
 C241T AAGTCATTT686- C3037T C10377Y C14408T A23403G G25429T C25916T

EPI_ISL_423561
 2020-03-31 2020-04-12
 United Kingdom hCoV-19/England/20144073804/2020
 C241T C3037T C14408T A23403G C25672T GGG28881AAC

EPI_ISL_423583
 2020-03-31 2020-04-12
 United Kingdom hCoV-19/England/20146060504/2020
 C241T C3037T C14408T C15324T A23403G

EPI_ISL_424929
 2020-03-31 2020-04-14
 United States hCoV-19/USA/NY-NYUMC122/2020
 C3037T C14408T A23403G G25563T

EPI_ISL_425146
 2020-03-31 2020-04-14
 United States hCoV-19/USA/WI-UW-89/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T C3037T C11653T C14408T C18705T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425155
 2020-03-31 2020-04-14
 United States hCoV-19/USA/WI-UW-98/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425158
 2020-03-31 2020-04-14
 United States hCoV-19/USA/WI-UW-101/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11417T T14073C C14408T A23403G A23947G G25855T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425164
 2020-03-31 2020-04-14
 United States hCoV-19/USA/WI-UW-107/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11417T T14073C C14408T A23403G A23947G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425167
 2020-03-31 2020-04-14
 United States hCoV-19/USA/WI-UW-110/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3871T G9053C C14408T A23403G T29008C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425168
 2020-03-31 2020-04-14
 United States hCoV-19/USA/WI-UW-111/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T C22687T A23403G G25563T C25671T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425170
 2020-03-31 2020-04-14
 United States hCoV-19/USA/WI-UW-113/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C5826T C14408T G20356T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425172
 2020-03-31 2020-04-14
 United States hCoV-19/USA/WI-UW-115/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3871T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425239
 2020-03-31 2020-04-14
 United Kingdom hCoV-19/England/CAMB-737C7/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_425240
 2020-03-31 2020-04-14
 United Kingdom hCoV-19/England/CAMB-737D6/2020
 C241T A2775G C3037T G4255T C6861T C13568T C14408T A20355G A23403G A26530G

EPI_ISL_425242
 2020-03-31 2020-04-14
 United Kingdom hCoV-19/England/CAMB-737F4/2020
 C241T C1684T C3037T C4002T G10097A C10198A C13536T C14184T C14408T C21058T A23403G C23731T GGG28881AAC

EPI_ISL_425246
 2020-03-31 2020-04-14
 United Kingdom hCoV-19/England/CAMB-7386A/2020
 C241T C3037T C5144T C5806T C14408T A23403G GGG28881AAC

EPI_ISL_425249
 2020-03-31 2020-04-14
 United Kingdom hCoV-19/England/CAMB-738A6/2020
 C241T C3037T C8025T C13019T C14408T A20268G A23403G C29108T G29734C

EPI_ISL_425251
 2020-03-31 2020-04-14
 United Kingdom hCoV-19/England/CAMB-738C4/2020
 C241T C3037T G8179T A13703G C14408T A23403G GGG28881AAC T29609C

EPI_ISL_425252
 2020-03-31 2020-04-14
 United Kingdom hCoV-19/England/CAMB-738D3/2020
 C241T C3037T C14408T A23403G G28086T GGG28881AAC

EPI_ISL_425255
 2020-03-31 2020-04-14
 United Kingdom hCoV-19/England/CAMB-7391C/2020
 G11083T C14805T T17247C G17334T G26144T

EPI_ISL_425262
 2020-03-31 2020-04-14
 United Kingdom hCoV-19/England/CAMB-739B2/2020
 C241T C3037T C14408T C16289T A23403G G25429T

EPI_ISL_425264
 2020-03-31 2020-04-14
 United Kingdom hCoV-19/England/CAMB-739EF/2020
 C241T C3037T C14408T A23403G G28812T GGG28881AAC

EPI_ISL_425266
 2020-03-31 2020-04-14
 United Kingdom hCoV-19/England/CAMB-73A0A/2020
 A2480G C2558T G11083T C14805T G26144T

EPI_ISL_425269
 2020-03-31 2020-04-14
 United Kingdom hCoV-19/England/CAMB-73A37/2020
 C241T C3037T C4069T C10702T C14408T A23403G GGG28881AAC

EPI_ISL_425270
 2020-03-31 2020-04-14
 United Kingdom hCoV-19/England/CAMB-73A46/2020
 C241T C3037T T4591C C14408T T19839C A23403G GGG28881AAC

EPI_ISL_425276
 2020-03-31 2020-04-14
 United Kingdom hCoV-19/England/CAMB-73ACE/2020
 C241T C3037T C13860T C14408T A23403G GGG28881AAC G29414T

EPI_ISL_425424
 2020-03-31 2020-04-14
 United Kingdom hCoV-19/England/CAMB-76D3B/2020
 A2480G C2558T G11083T C14805T G26144T

EPI_ISL_425427
 2020-03-31 2020-04-14
 United Kingdom hCoV-19/England/CAMB-76D95/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_425428
 2020-03-31 2020-04-14
 United Kingdom hCoV-19/England/CAMB-76DB3/2020
 C241T C3037T C14408T A23403G C27213T A28352T GGG28881AAC

EPI_ISL_425434
 2020-03-31 2020-04-14
 United Kingdom hCoV-19/England/CAMB-76E74/2020
 A187G C241T C3037T C14408T A23403G

EPI_ISL_425437
 2020-03-31 2020-04-14
 United Kingdom hCoV-19/England/CAMB-76EDE/2020
 C241T C1346T C3037T C14408T A23403G G28514T

EPI_ISL_425441
 2020-03-31 2020-04-14
 United Kingdom hCoV-19/England/CAMB-76F62/2020
 T3931C G11083T C14805T G26144T G28857T

EPI_ISL_425450
 2020-03-31 2020-04-14
 United Kingdom hCoV-19/England/CAMB-77004/2020
 C241T C635T C3037T C14408T A23403G C25350T

EPI_ISL_425452
 2020-03-31 2020-04-14
 United Kingdom hCoV-19/England/CAMB-77022/2020
 G1440A G2891A C4668T G28362T C28708T

EPI_ISL_425454
 2020-03-31 2020-04-14
 United Kingdom hCoV-19/England/CAMB-77040/2020
 C241T C1912T C3037T C14408T C21772T A23403G A24735T G25269T GGG28881AAC

EPI_ISL_425455
 2020-03-31 2020-04-14
 United Kingdom hCoV-19/England/CAMB-7705F/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_425458
 2020-03-31 2020-04-14
 United Kingdom hCoV-19/England/CAMB-7708C/2020
 C241T C313T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_425460
 2020-03-31 2020-04-14
 United Kingdom hCoV-19/England/CAMB-770B9/2020
 C241T C3037T A11270G C14408T A23403G GGG28881AAC

EPI_ISL_426007
 2020-03-31 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB442/2020
 C8782T C17470T C26088T T28144C

EPI_ISL_426008
 2020-03-31 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB501/2020
 C8782T C17470T C26088T T28144C G29321T

EPI_ISL_426009
 2020-03-31 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB502/2020
 C241T C1377T C3037T C14408T C16289T A23403G G25429T G28077T

EPI_ISL_426011
 2020-03-31 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB513/2020
 C241T G662T C1514T C3037T C14408T G18546T A20793T G21987C C23086T A23403G T26723A C27046T GGG28881AAC

EPI_ISL_426015
 2020-03-31 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB551/2020
 C8782T C17470T C23525T C26088T T28144C

EPI_ISL_426016
 2020-03-31 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB555/2020
 C241T C3037T C14408T A23403G C25433T

EPI_ISL_426023
 2020-03-31 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB565/2020
 C241T C3037T A5040G C14408T G15439A A23403G G25429T G25687T C28737T

EPI_ISL_426024
 2020-03-31 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB566/2020
 G11083T C14805T T17247C C25511T G26144T

EPI_ISL_426136 MT345882
 2020-03-31 2020-04-14
 United States SARS-CoV-2/human/USA/WA-UW-4406/2020
 ATTAAAGGTT1- C36T C241T C1059T C3037T C4113T C14408T A23403G G25563T

EPI_ISL_426137 MT345883
 2020-03-31 2020-04-14
 United States SARS-CoV-2/human/USA/WA-UW-4407/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C36T C241T C1059T C3037T C14408T A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_426465 MT350247
 2020-03-31 2020-04-17
 United States SARS-CoV-2/human/USA/VA-DCLS-0057/2020
 ATTAAAGGTTTATACCTTCC1- C241T C2416T C3037T C3923T G4523A C10712T C14408T A23403G G25563T

EPI_ISL_426466 MT350248
 2020-03-31 2020-04-17
 United States SARS-CoV-2/human/USA/VA-DCLS-0058/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A652T C1059T C3037T C14408T A23403G G25563T C27688T G29868A C29870A

EPI_ISL_426467 MT350249
 2020-03-31 2020-04-17
 United States SARS-CoV-2/human/USA/VA-DCLS-0059/2020
 ATTAAAGGTTTA1- C241T A652T C1059T C3037T C14408T A23403G G25563T C27688T C29870A

EPI_ISL_426468 MT350250
 2020-03-31 2020-04-17
 United States SARS-CoV-2/human/USA/VA-DCLS-0060/2020
 ATT1- C241T T1918C C3037T C14408T C18877T A23403G G25563T ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_426470 MT350252
 2020-03-31 2020-04-17
 United States SARS-CoV-2/human/USA/VA-DCLS-0063/2020
 ATTAAAGGT1- T11Y C241T C1059T C3037T C14408T A23403G G24755T G25563T

EPI_ISL_426561
 2020-03-31 2020-04-17
 United States hCoV-19/USA/AZ-TG273294/2020
 C241T C1059T C3037T C14408T A14747G C16658T A20755C A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426562
 2020-03-31 2020-04-17
 United States hCoV-19/USA/AZ-TG273300/2020
 C241T C1059T C3037T C14408T A14747G C16658T A20755C A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426563
 2020-03-31 2020-04-17
 United States hCoV-19/USA/AZ-TG273302/2020
 C241T C1059T C3037T C14408T A14747G C16658T A20755C A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426887 MT517424
 2020-03-31 2020-04-17
 Czech Republic SARS-CoV-2/human/CZE/IAB_10/2020
 ATTAAAGGTTT1- C241T C541T C1059T C3037T C3177A G11083T C14408T C20016T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_426888 MT517425
 2020-03-31 2020-04-17
 Czech Republic SARS-CoV-2/human/CZE/IAB_12/2020
 ATTAAAGGTTT1- C241T C1404T C3037T C6555T C14408T A23403G G25971T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_427160 MT451637
 2020-03-31 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC932/2020
 C241T C1059T C1392T C3037T G3251T C14408T A23403G G25563T C26625T

EPI_ISL_427163 MT358653
 2020-03-31 2020-04-17
 United States SARS-CoV-2/human/USA/CT-UW-4244/2020
 ATTAAAGGTTTATACCT1- A31W AAC34TTT C241T C1059T C3037T C14408T A23403G G25563T G28089T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_427164 MT358654
 2020-03-31 2020-04-17
 United States SARS-CoV-2/human/USA/CT-UW-4251/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C36T C241T C1059T C3037T A10479G C14408T A21137G A23403G G25563T G28191T C29296T AAAA29900-

EPI_ISL_427173 MT358661
 2020-03-31 2020-04-17
 United States SARS-CoV-2/human/USA/OR-UW-4300/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A31T C36T C241T C1059T C3037T C14408T A23403G G25563T G29862A G29864A TG29867AA C29870A

EPI_ISL_427222 MT358728
 2020-03-31 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-3964/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C36T C241T C1059T C3037T C7728A C14408T A23403G G25563T G29553A AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_427223 MT358729
 2020-03-31 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-3969/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_427240 MT358746
 2020-03-31 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-4105/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCT1- C241T C1059T TT1333AA C3037T AGG13512TTA C14408T A23403G G25563T A29903G

EPI_ISL_427241 MT358747
 2020-03-31 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-4109/2020
 ATTAAAGGTTTATACC1- AAC34TTT C241T C1059T C3037T C4084T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAA29888-

EPI_ISL_427242 MT358748
 2020-03-31 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-4111/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- AAC34TTT C241T C1059T C3037T C14408T T21146A A23403G G25563T

EPI_ISL_427246 MT358645
 2020-03-31 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-4188/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- C36T C241T C1059T C3037T C14408T C17118T A23403G G25563T G29553A AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_427247 MT358646
 2020-03-31 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-4197/2020
 AT1- C36T C241T C1059T C3037T C14408T A23403G G25563T C27804T G29553A AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_427248 MT358647
 2020-03-31 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-4213/2020
 AT1- AAC34TTT C241T C1059T C3037T C6040T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_427249 MT358648
 2020-03-31 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-4217/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- C36T C8782T C17747T A17858G C18060T T28144C AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_427250 MT358649
 2020-03-31 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-4227/2020
 A1- T13C ACC35TTH C241T C1059T C3037T C14408T C19263T A23403G G25563T C29445T

EPI_ISL_427251 MT358650
 2020-03-31 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-4228/2020
 ATTAAAGGTTTAT1- CCCAGGTAACAAACCAA19- C36T C241T C313T C3037T C3096T C14408T A23403G T24364C C25904T GGG28881AAC CAGTG29762- AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_427252 MT358656
 2020-03-31 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-4281/2020
 ATTAAAGGT1- A1262G G8602A C8782T C17747T A17858G C18060T G21800T C25418A G26152A G27090A T28144C C29838T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_427253 MT358657
 2020-03-31 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-4289/2020
 A1G A4D AAC34HWT C241T C1059T C3037T C12880T C14408T C20233T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_427254 MT358658
 2020-03-31 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-4290/2020
 ATTAAAGGTTT1- C36T C241T C1059T C3037T C12880T C14408T A23403G G25563T G29553A AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_427255 MT358659
 2020-03-31 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-4291/2020
 ATTAAAGGTTTATACCTTCCCA1- A31T AAC34TTT C241T C1059T C3037T C12880T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_427256 MT358660
 2020-03-31 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-4292/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- AAC34TTT C241T C1059T C3037T C12880T C14408T A23403G G25563T G29553A GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_427257 MT358662
 2020-03-31 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-4315/2020
 ATTAAAGGTT1- A31T AAC34TTT C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_427258 MT358663
 2020-03-31 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-4316/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- C36T C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAA29895-

EPI_ISL_427259 MT358664
 2020-03-31 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-4318/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T C3037T C6504T C10207T C14408T A23403G AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_427260 MT358665
 2020-03-31 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-4321/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A31T A34W C36T C241T C1059T C3037T C14408T A23403G G25563T G29553A ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_427261 MT358666
 2020-03-31 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-4322/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- C36T C241T C1059T C3037T C14408T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_427263 MT358668
 2020-03-31 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-4326/2020
 ATTAAAGGTTTAT1- A14T CCCAGGTAACAAACCAA19- C36T C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAA29896-

EPI_ISL_427265 MT358670
 2020-03-31 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-4330/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- G8602A C8782T C17747T A17858G C18060T T23482C C25418A G26152A T28144C A29903-

EPI_ISL_427269 MT358706
 2020-03-31 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-4499/2020
 AT1GA A4T C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_427288
 2020-03-31 2020-04-17
 United States hCoV-19/USA/OH-OSUP0016/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- T490A C3177T C6040T C8782T G11083T G12478A T18736C C18877T C24034T T26729C G28077C T28144C C28896G A29700G CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857TC

EPI_ISL_427290
 2020-03-31 2020-04-17
 United States hCoV-19/USA/OH-OSUP0017/2020
 ATTAAAGGTTTATACCTTCC1- A22G C241T C1059T C3037T C13275T C14408T C16616T C20368T A23403G G25563T CT29857TC AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_428673 MT371050
 2020-03-31 2020-04-21
 Sri Lanka SARS-CoV-2/human/LKA/COV486/2020
 C1762T C14805T T17247C G26144T

EPI_ISL_428910
 2020-03-31 2020-04-22
 Russia hCoV-19/Russia/Khabarovsk-88201/2020
 C241T C3037T C4002T G10097A G11083T C13536T C14408T A23403G C23731T GGG28881AAC

EPI_ISL_429020 MT385444
 2020-03-31 2020-04-23
 United States SARS-CoV-2/human/USA/CA-CZB0721/2020
 C8782T C17747T A17858G C18060T C21595T T25962G T28144C G28392T

EPI_ISL_429023 MT385447
 2020-03-31 2020-04-23
 United States SARS-CoV-2/human/USA/CA-CZB0740/2020
 C241T C1059T A2018G A2160G C3037T G12167A C14408T A16060G T21995C A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_429025 MT385449
 2020-03-31 2020-04-23
 United States SARS-CoV-2/human/USA/CA-CZB0737/2020
 ATTA1- C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_429026 MT385450
 2020-03-31 2020-04-23
 United States SARS-CoV-2/human/USA/CA-CZB0731/2020
 A1- C241T C1059T C3037T G9049T T9070C T10960C C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_429598
 2020-03-31 2020-04-23
 United States hCoV-19/USA/WA-UW-4546/2020
 TTAAAGGTT2- T13A C5730T A6693G C8782T TT8885AA T13112A G13687T G14335T C14877T C17747T A17858G C18060T T21146A T28144C C28519T A29188T

EPI_ISL_429600 MT375430
 2020-03-31 2020-04-23
 United States SARS-CoV-2/human/USA/WA-UW-4549/2020
 ATTAAAGGTTTATACCTTCC1- A31T C36T C241T C1059T C3037T C14408T C16750T A23403G G25563T G29553A

EPI_ISL_429605 MT375434
 2020-03-31 2020-04-23
 United States SARS-CoV-2/human/USA/WA-UW-4578/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T C3037T C6040T C14408T T22318C A23403G G25563T -29904AAAAAAAAAAAAA

EPI_ISL_429608 MT375437
 2020-03-31 2020-04-23
 United States SARS-CoV-2/human/USA/WA-UW-4593/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C1059T C3037T C14408T C16289T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_429609 MT375438
 2020-03-31 2020-04-23
 United States SARS-CoV-2/human/USA/WA-UW-4594/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C36T C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAA29900-

EPI_ISL_429611 MT375440
 2020-03-31 2020-04-23
 United States SARS-CoV-2/human/USA/WA-UW-4602/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A34H C36T C241T C1059T C3037T C14408T A23403G G25563T A29903-

EPI_ISL_429794
 2020-03-31 2020-04-24
 Luxembourg hCoV-19/Luxembourg/LNS6479831/2020
 C241T C1059T C3037T C14408T C16750T A23403G G25563T G29705T AAAAAAAAAA29894-

EPI_ISL_430121 MT632626
 2020-03-31 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S267/2020
 C241T C1059T C3037T A4091G C9924T C14408T A23403G G25563T G26918T G29553A

EPI_ISL_430125 MT632632
 2020-03-31 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S271/2020
 C8782T C17747T C17766T A17858G C18060T T28144C

EPI_ISL_430153 MT632631
 2020-03-31 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S299/2020
 G368A C8782T C17747T C17766T A17858G C18060T T28144C

EPI_ISL_430351
 2020-03-31 2020-04-26
 United States hCoV-19/USA/NY-NYUMC324/2020
 C241T C1059T G1181T G2731A C3037T C11916T C14408T C18998T A23403G G25563T TTA26159- G29540A

EPI_ISL_430479 MT451680
 2020-03-31 2020-04-27
 Australia SARS-CoV-2/human/AUS/VIC995/2020
 C4540T C8782T T9477A C14805T C17470Y G17632A G25979T T28144C C28311T C28657T C28863T

EPI_ISL_430551 MT451674
 2020-03-31 2020-04-27
 Australia SARS-CoV-2/human/AUS/VIC989/2020
 C241T C3037T T7438C C14408T A23403G A26864G C27630T C29353T

EPI_ISL_430556 MT451675
 2020-03-31 2020-04-27
 Australia SARS-CoV-2/human/AUS/VIC990/2020
 C241T C1059T C2523T C3037T C14408T A23403G G25563T

EPI_ISL_430801
 2020-03-31 2020-04-27
 Argentina hCoV-19/Argentina/PAIS_A009/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTC1- C241T C3037T C14408T A20268G A23403G TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_430802
 2020-03-31 2020-04-27
 Argentina hCoV-19/Argentina/PAIS_A011/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATC1- C241T C3037T C14408T T20989A A23403G GGG28881AAC TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_430938 MT412295
 2020-03-31 2020-04-28
 United States SARS-CoV-2/human/USA/WA-UW-4226/2020
 ATTAAAGGTTTATACC1- T17G AAC34TTT C8782T C17747T A17858G C18060T T28144C G29864A TG29867AA C29870A

EPI_ISL_430941 MT412298
 2020-03-31 2020-04-28
 United States SARS-CoV-2/human/USA/WA-UW-4279/2020
 ATTAAAG1- AAC34TTT C241T C1059T C3037T C6040T C14408T A23403G G25563T TG29867AA C29870A

EPI_ISL_430942 MT412299
 2020-03-31 2020-04-28
 United States SARS-CoV-2/human/USA/ID-UW-4307/2020
 TAAAGGTTTATACCTTCCCAGGTAACAAA3- C36T C241T C1059T C3037T C13665T C14408T A16387T A23403G G25563T A26055G C28519T G29864A TG29867AA C29870A -29904AAAAAAAAAAAAAAAAAA

EPI_ISL_430951 MT412308
 2020-03-31 2020-04-28
 United States SARS-CoV-2/human/USA/WA-UW-4413/2020
 ATTAA1- C241T C1059T C3037T C14408T A23403G G25563T A29403G TG29867AA C29870A -29904AAAAAAAAAAAAAAAAAA

EPI_ISL_432200
 2020-03-31 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-276C5/2020
 A1- G1440A G2891A C12923T C25669T G28851T

EPI_ISL_432206
 2020-03-31 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-27698/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T937C C3037T C14408T A23403G GGG28881AAC

EPI_ISL_432208
 2020-03-31 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-278A1/2020
 C241T C3037T C14408T G19962K A23403G C26750M

EPI_ISL_432214
 2020-03-31 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-273CE/2020
 A2480G C2558T C2607T G11083T C14805T A17656G G26144T

EPI_ISL_432218
 2020-03-31 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-29BB5/2020
 A1- G1148T A1515G C9223T G11083T C14805T T17247C G26144T C29837T

EPI_ISL_432223
 2020-03-31 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-27443/2020
 AT1- G11083T C14805T T17247C G26144T C29482T

EPI_ISL_432224
 2020-03-31 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-27786/2020
 ATT1- C241T C3037T C12084T C14408T A23403G GGG28881AAC

EPI_ISL_432232
 2020-03-31 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-27391/2020
 AT1- C241T C3037T C14408T G17964A A23403G C23575T G24959T

EPI_ISL_432238
 2020-03-31 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-27C1E/2020
 C241T C3037T C14408T A23403G

EPI_ISL_432242
 2020-03-31 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-27328/2020
 G1440A G2891A C9491T A15779G C25669T G28851T

EPI_ISL_432254
 2020-03-31 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-2748F/2020
 C241T C3037T C11704Y C14408T A23403G GGG28881AAC T29855Y

EPI_ISL_432260
 2020-03-31 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-27197/2020
 C241T C3037T A3215G C14408T G15438T A20268G A23403G

EPI_ISL_432277
 2020-03-31 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-27285/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_432278
 2020-03-31 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-275C8/2020
 AT1- C241T C1059T C3037T C14408T C16329T A18639G A23403G C23536T G25563T C25731T C29625T

EPI_ISL_432282
 2020-03-31 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-274AD/2020
 AT1- C241T C3037T T13572Y C14408T A23403G GGG28881RRS

EPI_ISL_432285
 2020-03-31 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-271E2/2020
 ATTAA1- G1440A G2891A C25669T G28851T

EPI_ISL_432299
 2020-03-31 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-27470/2020
 ATTAA1- C241T C3037T T3788Y G5561A C14408T C21242T A23403G GGG28881AAC

EPI_ISL_432302
 2020-03-31 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-273A0/2020
 ATTA1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC

EPI_ISL_432303
 2020-03-31 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-27759/2020
 C241T C3037T C14408T C16289T A23403G G25429T

EPI_ISL_432306
 2020-03-31 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-27689/2020
 ATTAAAGGTTTA1- A2480G C2558T G11083T C14805T C19983T G23749T G26144T

EPI_ISL_432307
 2020-03-31 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-27267/2020
 AT1- C241T C3037T C14408T A23403G

EPI_ISL_432312
 2020-03-31 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-271F1/2020
 ATT1- G1440A G2891A G4720T C16329T A27669G

EPI_ISL_432314
 2020-03-31 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-276B6/2020
 ATT1- A1515G C3903T C9223T G11083T T13064C C14805T T17247C G21123T G26144T

EPI_ISL_432529
 2020-03-31 2020-04-29
 United Kingdom hCoV-19/England/SHEF-CC905/2020
 C2558T G11083T C14805T C16616T C25463T A25822G G26144T C29167T

EPI_ISL_432533
 2020-03-31 2020-04-29
 United Kingdom hCoV-19/England/SHEF-CCC93/2020
 C241T C3037T C14408T C18713T A23403G GGG28881AAC

EPI_ISL_432547
 2020-03-31 2020-04-29
 United Kingdom hCoV-19/England/SHEF-CD52E/2020
 ATG1605- A1904G C8090T C10789T A12796C

EPI_ISL_432802
 2020-03-31 2020-04-29
 United Kingdom hCoV-19/England/SHEF-C5359/2020
 C241T C3037T C14408T C21614T A23403G

EPI_ISL_432963
 2020-03-31 2020-04-29
 United Kingdom hCoV-19/England/NOTT-10F0E2/2020
 C241T C3037T A7877G T11798C C14408T C16289T A23403G G25429T

EPI_ISL_432965
 2020-03-31 2020-04-29
 United Kingdom hCoV-19/England/NOTT-10F10D/2020
 G431A ATG1605- C20270T C25710T A29683T

EPI_ISL_432967
 2020-03-31 2020-04-29
 United Kingdom hCoV-19/England/NOTT-10F12B/2020
 C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_432970
 2020-03-31 2020-04-29
 United Kingdom hCoV-19/England/NOTT-10F176/2020
 A2480G C2558T T7021C G11083T C14805T G26144T

EPI_ISL_433216
 2020-03-31 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB613/2020
 G11083T C14805T G26144T G28842T

EPI_ISL_433217
 2020-03-31 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB620/2020
 C241T C1059T C3037T C11747T C14408T A23403G G25563T

EPI_ISL_433525
 2020-03-31 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR1261/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4540T C8782T T9477A C14805T C25714T G25979T C26029A T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_433527
 2020-03-31 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR1267/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C228T C241T C3037T G6872R C14408T T17126C A20268G A23403G C28770T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_433551
 2020-03-31 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR1356/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C12710T C20436T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_433552
 2020-03-31 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR1358/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C8727T C12710T T15915C C28854T

EPI_ISL_434082 MT632941
 2020-03-31 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S322/2020
 C8782T G9968A C17747T A17858G C18060T T28144C

EPI_ISL_434196 MT633020
 2020-03-31 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S436/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434197 MT632866
 2020-03-31 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S437/2020
 A8145G C8782T C17747T A17858G C18060T C26078T T28144C

EPI_ISL_434201 MT632909
 2020-03-31 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S441/2020
 A6693G C8782T C14877T C17747T A17858G C18060T T28144C C28519T A29188T

EPI_ISL_434209 MT632810
 2020-03-31 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S449/2020
 C241T C379A C1059T T2244C C3037T A10761G C14408T A23403G G25563T

EPI_ISL_434211 MT632880
 2020-03-31 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S451/2020
 A6693G C8782T C14877T C17747T A17858G C18060T T28144C C28519T A29188T

EPI_ISL_434212 MT632992
 2020-03-31 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S452/2020
 C8782T C17747T A17858G C18060T T28144C C29366T

EPI_ISL_434214 MT632795
 2020-03-31 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S454/2020
 A6693G C8782T C14877T C17747T A17858G C18060T T26106G C28519T A29188T

EPI_ISL_434215 MT632850
 2020-03-31 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S455/2020
 A6693G C8782T C14877T C17747T A17858G C18060T T28144C C28519T A29188T

EPI_ISL_434247 MT633039
 2020-03-31 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S487/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434257 MT632890
 2020-03-31 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S497/2020
 G1401A C8782T T13438C C17747T A17858G C18060T T28144C

EPI_ISL_434259 MT632860
 2020-03-31 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S499/2020
 A6693G C8782T C14877T C17747T A17858G C18060T T28144C C28519T A29188T

EPI_ISL_434280 MT633006
 2020-03-31 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S520/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434286 MT632840
 2020-03-31 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S526/2020
 G3638T A6693G C8782T C14877T C17747T A17858G C18060T T28144C C28519T A29188T

EPI_ISL_434288 MT632983
 2020-03-31 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S528/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434298 MT632824
 2020-03-31 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S538/2020
 A6693G C8782T C14877T C17747T A17858G C18060T T28144C C28519T A29188T

EPI_ISL_434305 MT632874
 2020-03-31 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S545/2020
 C3832T G8602A C8782T C17747T A17858G C18060T G26152A T28144C

EPI_ISL_434308 MT632786
 2020-03-31 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S548/2020
 A6693G C8782T C14877T C17747T A17858G C18060T T19909G T28144C C28519T A29188T

EPI_ISL_434313 MT632830
 2020-03-31 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S553/2020
 A6693G C8782T C11195T C14877T C17747T A17858G C18060T T28144C C28519T A29188T

EPI_ISL_434328 MT632823
 2020-03-31 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S568/2020
 A6693G C8782T C14877T C17747T A17858G C18060T T28144C C28519T A29188T

EPI_ISL_434334 MT632842
 2020-03-31 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S574/2020
 C300T A6693G C8782T C14877T C17747T A17858G C18060T T28144C C28519T A29188T

EPI_ISL_434335 MT632877
 2020-03-31 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S575/2020
 A6693G C8782T C14877T C17747T A17858G C18060T T28144C C28519T A29188T

EPI_ISL_434342 MT632949
 2020-03-31 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S582/2020
 G1401A C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434346 MT632772
 2020-03-31 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S586/2020
 T1592C C1853T A6693G C8782T C14877T G15429A C17747T A17858G C18060T T28144C C28519T A29188T

EPI_ISL_434368
 2020-03-31 2020-04-29
 Belgium hCoV-19/Belgium/ITM_C211/2020
 C241T C1059T C3037T C14408T A23403G G25563T C26542T

EPI_ISL_434964
 2020-03-31 2020-05-01
 United States hCoV-19/USA/TX-HMH375/2020
 C302T T490A C3177T C6040T C8782T C8950T G12478A T18736C C24034T T26729C G28077C T28144C C28657T C28896G C29451T A29700G

EPI_ISL_434971
 2020-03-31 2020-05-01
 United States hCoV-19/USA/TX-HMH383/2020
 T490A C2627T C3177T C6040T C8782T C8950T C11941T G12478A T18736C C24034T G28077C T28144C A28155G C28896G C29451T A29700G

EPI_ISL_434972
 2020-03-31 2020-05-01
 United States hCoV-19/USA/TX-HMH384/2020
 C241T C1059T C3037T G6362A C10188T C14408T A23403G T24982C G25563T C27964T

EPI_ISL_434975
 2020-03-31 2020-05-01
 United States hCoV-19/USA/TX-HMH388/2020
 C241T C1059T C3037T C13019T C14408T A23403G G25563T C27964T

EPI_ISL_434979
 2020-03-31 2020-05-01
 United States hCoV-19/USA/TX-HMH392/2020
 C241T C3037T A6616G G14118T C14408T G15243T A23403G

EPI_ISL_434985
 2020-03-31 2020-05-01
 United States hCoV-19/USA/TX-HMH398/2020
 C241T C3037T C14408T A23403G C24463A T27801C C28725A

EPI_ISL_434986
 2020-03-31 2020-05-01
 United States hCoV-19/USA/TX-HMH399/2020
 T490A C3177T C6040T C8782T C8950T G12478A T18736C G21051A C24034T G25429T T26729C T26972C G28077C T28144C C28896G C29451T A29700G

EPI_ISL_434988
 2020-03-31 2020-05-01
 United States hCoV-19/USA/TX-HMH401/2020
 C241T C1059T C3037T C14408T T19905C A23403G G25563T C27964T C29095T

EPI_ISL_434990
 2020-03-31 2020-05-01
 United States hCoV-19/USA/TX-HMH403/2020
 C241T C3037T C5812T A6616G G14118T C14408T G15243T A23403G

EPI_ISL_434992
 2020-03-31 2020-05-01
 United States hCoV-19/USA/TX-HMH406/2020
 C241T C1059T C3037T C14408T C20320T A23403G G25563T

EPI_ISL_434994
 2020-03-31 2020-05-01
 United States hCoV-19/USA/TX-HMH408/2020
 C241T C3037T A6616G G14118T C14408T G15243T A23403G

EPI_ISL_434995
 2020-03-31 2020-05-01
 United States hCoV-19/USA/TX-HMH409/2020
 C241T C1059T C3037T C10188T C14408T A23403G T24982C G25563T C27964T

EPI_ISL_434997
 2020-03-31 2020-05-01
 United States hCoV-19/USA/TX-HMH412/2020
 C241T C1059T C3037T T8914G C14408T G17808T A23403G G23593T G25563T T27384C C27964T

EPI_ISL_435445
 2020-03-31 2020-05-05
 United States hCoV-19/USA/LA-SR0140/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T

EPI_ISL_435447
 2020-03-31 2020-05-05
 United States hCoV-19/USA/LA-SR0143/2020
 C241T C1059T C3037T C14408T A23403G A24952G G25563T C27964T C28826T

EPI_ISL_435465
 2020-03-31 2020-05-05
 United States hCoV-19/USA/LA-SR0162/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T

EPI_ISL_435467
 2020-03-31 2020-05-05
 United States hCoV-19/USA/LA-SR0164/2020
 C241T C1059T C3037T C10319T C14408T G16622A A23403G G25563T C27964T

EPI_ISL_435489
 2020-03-31 2020-05-05
 United States hCoV-19/USA/NY-NYUMC422/2020
 C241T C1059T C3037T C11916T T12757C C14408T G22051T A23403G G25563T

EPI_ISL_436107
 2020-03-31 2020-05-06
 Taiwan hCoV-19/Taiwan/TSGH-22/2020
 C241T C1059T C3037T G12014T C14408T C16260T T18471C A23403G G25563T C28821A -29904CAAAAAAAAAAACAAATAAACAAAAAAAAACAAGGGAGAACAAAAAGAAAGCAAGAAAAAAAAAAAAAAAAA

EPI_ISL_436414
 2020-03-31 2020-05-06
 India hCoV-19/India/NCDC-2502/2020
 C6312A A9912M G11083T C13730T C14931Y G14974K G15146R C19524T A21137G C23929T AG24389MS C29555T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_436415
 2020-03-31 2020-05-06
 India hCoV-19/India/NCDC-2507/2020
 GA72RM T78W C6312A A6925T C8016Y T8022K A9330R A9397R A9469M G10004K A10037R G10046R G11083K C11669Y A13653R C13730T C16362Y G19669R C21727Y G23401K C23929T AG24389MS G27358K C28311T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_436420
 2020-03-31 2020-05-06
 India hCoV-19/India/NCDC-2522/2020
 T2047W C6312A T8022K G11083T C13730T A23116W C23929T AG24389MS C28311T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_436421
 2020-03-31 2020-05-06
 India hCoV-19/India/NCDC-2525/2020
 C584Y C6312A T8022K C8543S C9039Y G11083T G13390K C13730T A14207M C19263M A21137G C23929T AG24389MS C28311Y C29555T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_436422
 2020-03-31 2020-05-06
 India hCoV-19/India/NCDC-2535/2020
 C6310A C6312A A9942W G11083T C12312Y G12685T C13730T C19524T C23929T AG24389MS C28311T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_436567 MT706381
 2020-03-31 2020-05-06
 United States SARS-CoV-2/human/USA/WI-UW-273/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9195T C14408T T15354C C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_436568 MT706382
 2020-03-31 2020-05-06
 United States SARS-CoV-2/human/USA/WI-UW-274/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A12839C G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_437199
 2020-03-31 2020-05-08
 Austria hCoV-19/Austria/Graz-MUG3/2020
 C241T C14408T G15957T C18877T A23403G G24197T G25563T C26735T

EPI_ISL_437200
 2020-03-31 2020-05-08
 Austria hCoV-19/Austria/Graz-MUG4/2020
 C241T C14408T G15957T C18877T A23403G G24197T G25563T C26735T

EPI_ISL_437232
 2020-03-31 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0033/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_437277
 2020-03-31 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0083/2020
 C241T C3037T G3955T C14408T C19961T A23403G C27046T GGG28881AAC

EPI_ISL_437363
 2020-03-31 2020-05-08
 United States hCoV-19/USA/MN-MDH-315/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C37A C8782T C17747T A17858G C18060T A24694T T28144C G28812T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_437399 MT450885
 2020-03-31 2020-05-08
 United States SARS-CoV-2/human/USA/VA-DCLS-0183/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C1917T C3037T C14408T A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_437547
 2020-03-31 2020-05-11
 United States hCoV-19/USA/LA-SR0207/2020
 C241T C1059T C3037T G4148T C10188T C14408T C17440T A23403G T24982C G25563T C27964T C29870A

EPI_ISL_437628
 2020-03-31 2020-05-11
 Denmark hCoV-19/Denmark/ALAB-SSI-1008/2020
 C241T C1059T C3037T C14408T A23403G G25563T G26730T

EPI_ISL_437629
 2020-03-31 2020-05-11
 Denmark hCoV-19/Denmark/ALAB-SSI-1033/2020
 C241T C1059T C3037T C13517T C14408T A23403G G25563T

EPI_ISL_437636
 2020-03-31 2020-05-11
 Denmark hCoV-19/Denmark/ALAB-SSI-1192/2020
 C241T C1059T C3037T T8788C C14408T A23403G G25563T G26951A C27799T

EPI_ISL_437820 MT461620
 2020-03-31 2020-05-11
 United States SARS-CoV-2/human/USA/WA-UW-4114/2020
 ATTAAAGGT1- A12T TCCC18GGGM C241T C1059T C3037T C10989T C14408T A21417T C21575T A23403G G25563T G29864D AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_437821 MT461621
 2020-03-31 2020-05-11
 United States SARS-CoV-2/human/USA/WA-UW-4210/2020
 ATTA1CGGG T10G T13A C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_437822 MT461622
 2020-03-31 2020-05-11
 United States SARS-CoV-2/human/USA/WA-UW-4221/2020
 ATTAAAGGTTTA1- T18G CC20BH C28Y C8782T C17747T A17858G C18060T T28144C C29870A -29904AAAAAAAAAAAAAA

EPI_ISL_437823
 2020-03-31 2020-05-11
 United States hCoV-19/USA/WA-UW-4224/2020
 ATTAAAGGTTTAT1- TCC18GGG C241T C1059T C3037T AG3190- A3917G AA3920TT C10319T C14408T C18747T A21417T A23403G G25563T C27964T G29864A TG29867AA C29870A

EPI_ISL_437824 MT461623
 2020-03-31 2020-05-11
 United States SARS-CoV-2/human/USA/WA-UW-4225/2020
 A12T TC18GV C8782T C17747T A17858G C18060T T28144C -29904AAAAAAAAAAAAAAAA

EPI_ISL_437827 MT461626
 2020-03-31 2020-05-11
 United States SARS-CoV-2/human/USA/WA-UW-4270/2020
 A1- AAA4- A12D TCCC18GGGA A1079C G1397A T7225C C9319T G11083T C19862T T27384C T28688C G29742T

EPI_ISL_437829 MT461629
 2020-03-31 2020-05-11
 United States SARS-CoV-2/human/USA/WA-UW-4317/2020
 ATTAAA1- A12T C19V C8782T C17747T A17858G C18060T T28144C -29904AAAAAAAAAAAAAAAA

EPI_ISL_437873
 2020-03-31 2020-05-11
 United States hCoV-19/USA/AK-PHL087/2020
 ATTAAAGGTTTATACCTTCC1- C241T C1059T C3037T T6778W T7082Y C14006A C14408T A23403G C23423T G25563T G28044T

EPI_ISL_437911 MT459925
 2020-03-31 2020-05-11
 Greece SARS-CoV-2/human/GRC/56_37161/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- A187G C241T C3037T C14408T A23403G ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_438121
 2020-03-31 2020-05-12
 Austria hCoV-19/Austria/CeMM0358/2020
 C241T C3037T C14408T T22521K A23403G C24621T C27046T GGG28881AAC AAAAAAAAAAAAAAAA29888-

EPI_ISL_438783
 2020-03-31 2020-05-12
 United Kingdom hCoV-19/Scotland/CVR1263/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4540T C8782T T9477A C14805T C25714T G25979T C26029A T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_439381
 2020-03-31 2020-05-12
 United Kingdom hCoV-19/England/CAMB-772B3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C20611T A23403G GGG28881AAC AAA29901-

EPI_ISL_439393
 2020-03-31 2020-05-12
 United Kingdom hCoV-19/England/CAMB-779CD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2676T C3037T C3587T C14408T A23403G T25202K GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_439405
 2020-03-31 2020-05-12
 United Kingdom hCoV-19/England/CAMB-77866/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G5554T C14408T A23403G G24368T T25202K C25463A G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_439431
 2020-03-31 2020-05-12
 United Kingdom hCoV-19/England/CAMB-77909/2020
 ATTA1- T1030C G11083T C14805T T17247C T25202K G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_439449
 2020-03-31 2020-05-12
 United Kingdom hCoV-19/England/CAMB-776C6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G26439T G27882A GGG28881AAC

EPI_ISL_439503
 2020-03-31 2020-05-12
 United Kingdom hCoV-19/England/CAMB-774BD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G11083T G12797A C14805T C20844T C21108T T25202K G26144T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_439511
 2020-03-31 2020-05-12
 United Kingdom hCoV-19/England/CAMB-76EA1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13592T C14408T C17502T A23403G T25202K GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_439998
 2020-03-31 2020-05-12
 United Kingdom hCoV-19/England/BRIS-121F74/2020
 ATTA1- C241T C3037T G10097A C14408T A23403G C23731T T25202K G28580T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_440839
 2020-03-31 2020-05-12
 United Kingdom hCoV-19/England/CAMB-77A60/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2937T C3037T C14408T A20268G A23403G T25202K AAAAAAAAAAAAAAA29889-

EPI_ISL_440971
 2020-03-31 2020-05-12
 United Kingdom hCoV-19/England/LOND-D368C/2020
 C241T C3037T C14408T A23403G A26530G

EPI_ISL_440972
 2020-03-31 2020-05-12
 United Kingdom hCoV-19/England/LOND-D369B/2020
 C241T C3037T C14408T A23403G A26530G

EPI_ISL_440973
 2020-03-31 2020-05-12
 United Kingdom hCoV-19/England/LOND-D36B9/2020
 C241T C3037T C6982T C14408T A23403G A26530G

EPI_ISL_440975
 2020-03-31 2020-05-12
 United Kingdom hCoV-19/England/LOND-D36D7/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_440976
 2020-03-31 2020-05-12
 United Kingdom hCoV-19/England/LOND-D36F5/2020
 C241T C3037T C14408T A23403G A26530G

EPI_ISL_440977
 2020-03-31 2020-05-12
 United Kingdom hCoV-19/England/LOND-D3701/2020
 C241T C3037T C4002T G10097A C13536T C14184T C14408T C21058T A23403G C23731T GGG28881AAC CTGCTAGAATGG28893-

EPI_ISL_440980
 2020-03-31 2020-05-12
 United Kingdom hCoV-19/England/LOND-D373E/2020
 C241T C3037T C4002T G10097A T11419C C13536T C14408T A23403G C23731T GGG28881AAC

EPI_ISL_440981
 2020-03-31 2020-05-12
 United Kingdom hCoV-19/England/LOND-D374D/2020
 C241T C3037T C14408T A23403G C26534T GGG28881AAC

EPI_ISL_440983
 2020-03-31 2020-05-12
 United Kingdom hCoV-19/England/LOND-D3789/2020
 C241T C3037T C14408T A23403G A26530G

EPI_ISL_440984
 2020-03-31 2020-05-12
 United Kingdom hCoV-19/England/LOND-D3798/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_440985
 2020-03-31 2020-05-12
 United Kingdom hCoV-19/England/LOND-D37A7/2020
 C241T G256A C2416T C3037T C14408T C14786T G20578T A23403G C25460T G25563T

EPI_ISL_440986
 2020-03-31 2020-05-12
 United Kingdom hCoV-19/England/LOND-D37B6/2020
 C241T C3037T C14408T A23403G A26530G

EPI_ISL_440987
 2020-03-31 2020-05-12
 United Kingdom hCoV-19/England/LOND-D37C5/2020
 C241T C3037T C14408T A23403G C29586T

EPI_ISL_440988
 2020-03-31 2020-05-12
 United Kingdom hCoV-19/England/LOND-D37D4/2020
 A439G A2480G C2558T G11083T C14805T G26144T G26779T

EPI_ISL_440989
 2020-03-31 2020-05-12
 United Kingdom hCoV-19/England/LOND-D37E3/2020
 C241T C3037T C14408T A23403G

EPI_ISL_440990
 2020-03-31 2020-05-12
 United Kingdom hCoV-19/England/LOND-D37F2/2020
 C241T C3037T C3373A C11195T C14408T C19170T A23403G GGG28881AAC A29467T

EPI_ISL_441112
 2020-03-31 2020-05-12
 United Kingdom hCoV-19/England/CAMB-7815B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T1155C G11083T G13627T C14805T C15540T C15960T G26144T G26314C C27879T A28338G

EPI_ISL_443184 MT461627
 2020-03-31 2020-05-12
 United States SARS-CoV-2/human/USA/WA-UW-4296/2020
 ATTAAA1- T10A T13A A31T AAC34TTT C241T C1059T C3037T C12880T C14408T A23403G G25563T G29553A G29706T G29862A G29864A TG29867AA C29870A -29904AAAAAAAAAAAAAAAAAA

EPI_ISL_443186 MT461630
 2020-03-31 2020-05-12
 United States SARS-CoV-2/human/USA/WA-UW-4414/2020
 A1- A4T AAC34TTT C241T C1059T C3037T G5194T G11807A C14408T A23403G A23440G G25563T G29862A G29864A TG29867AA C29870A

EPI_ISL_443255
 2020-03-31 2020-05-12
 United States hCoV-19/USA/MN-UMGC-4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T27384C G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_443290
 2020-03-31 2020-05-12
 France hCoV-19/France/B5681/2020
 G23A TA25GT C28T C241T C1059T A1547G C3037T C14408T G21920A A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_444662
 2020-03-31 2020-05-14
 United States hCoV-19/USA/NY-NYUMC545/2020
 C241T C1059T C3037T A4360C C14408T A23403G G25563T

EPI_ISL_444663
 2020-03-31 2020-05-14
 United States hCoV-19/USA/NY-NYUMC546/2020
 C241T C1059T C3037T C10376T C12789T C14408T A23403G G25563T

EPI_ISL_444669
 2020-03-31 2020-05-14
 United States hCoV-19/USA/NY-NYUMC552/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_444673
 2020-03-31 2020-05-14
 United States hCoV-19/USA/NY-NYUMC556/2020
 C241T C3037T C14408T A23403G A25505C GGG28881AAC

EPI_ISL_444677
 2020-03-31 2020-05-14
 United States hCoV-19/USA/NY-NYUMC560/2020
 C241T C1059T C3037T C14408T C22712T A23403G G25563T C26873T

EPI_ISL_444706
 2020-03-31 2020-05-14
 United States hCoV-19/USA/NY-NYUMC589/2020
 C241T C1059T C3037T C11916T C14408T A23403G G25563T C27476T

EPI_ISL_444848
 2020-03-31 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-1292/2020
 C241T C1059T C3037T T11290C C14408T C17634T A23403G G25563T

EPI_ISL_444954
 2020-03-31 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-883/2020
 C241T C1059T C1302T C3037T C6638T C9979T G11417T C14408T C21952T A23403G G25563T G29779T

EPI_ISL_444956
 2020-03-31 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-887/2020
 C241T C1059T C3037T G5206T C12781T C14408T C15842A G22103C A23403G G25563T

EPI_ISL_444958
 2020-03-31 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-890/2020
 C241T C3037T C7834T C14408T A23403G

EPI_ISL_444959
 2020-03-31 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-892/2020
 C241T C3037T C7834T C14408T A23403G

EPI_ISL_444960
 2020-03-31 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-893/2020
 C241T C3037T C7834T C14408T A23403G

EPI_ISL_444964
 2020-03-31 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-899/2020
 C241T GTTATG515- C3037T C14408T A23403G GGG28881AAC C29095T

EPI_ISL_444968
 2020-03-31 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-907/2020
 C241T C601T C1059T C1302T C3037T C11653T C14408T T16008C A23403G G25563T

EPI_ISL_445116
 2020-03-31 2020-05-15
 United States hCoV-19/USA/CA-SR0135/2020
 C241T C1059T C1887T C3037T C14408T C15346T C19269T A23403G G25563T

EPI_ISL_445119
 2020-03-31 2020-05-15
 United States hCoV-19/USA/LA-SR0264/2020
 C241T AAGTCATTT686- C1059T G2808A C3037T G3582T C14408T A23403G G25563T A26433G

EPI_ISL_445121
 2020-03-31 2020-05-15
 United States hCoV-19/USA/LA-SR0266/2020
 C241T C1059T C3037T C10319T C14408T A23403G G25563T C27964T

EPI_ISL_445122
 2020-03-31 2020-05-15
 United States hCoV-19/USA/LA-SR0267/2020
 C241T C1059T C3037T C6285T C14408T A23403G G25563T C27964T

EPI_ISL_445126
 2020-03-31 2020-05-15
 United States hCoV-19/USA/LA-SR0271/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T T29128C

EPI_ISL_445130
 2020-03-31 2020-05-15
 United States hCoV-19/USA/LA-SR0275/2020
 C241T C1059T C3037T C10319T C14408T A23403G G25563T C27600T C27964T C29730T

EPI_ISL_445131
 2020-03-31 2020-05-15
 United States hCoV-19/USA/LA-SR0276/2020
 C241T C1059T C3037T C14408T C21629A A23403G G25563T C27964T C29347T ATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATT29684-

EPI_ISL_445134
 2020-03-31 2020-05-15
 United States hCoV-19/USA/LA-SR0279/2020
 C241T C1059T C3037T G6362A C10188T C14408T A23403G T24982C G25563T C27964T

EPI_ISL_445136
 2020-03-31 2020-05-15
 United States hCoV-19/USA/LA-SR0281/2020
 C241T C1059T C3037T C10319T C14408T C19586A C21627T A23403G G25563T G26209T C27654T C27964T C29025T

EPI_ISL_445138
 2020-03-31 2020-05-15
 United States hCoV-19/USA/LA-SR0283/2020
 C241T C1059T C3037T G8131T C10319T C14408T A23403G G25563T C27964T

EPI_ISL_445141
 2020-03-31 2020-05-15
 United States hCoV-19/USA/LA-SR0286/2020
 C241T C1059T C3037T C14408T T21968C A23403G G25563T C25886T C27964T T29302C

EPI_ISL_445144
 2020-03-31 2020-05-15
 United States hCoV-19/USA/LA-SR0289/2020
 C241T C1059T C3037T C10319T C14408T C19586A C21304A C21627T A23403G G25563T C27964T

EPI_ISL_445177 MT474134
 2020-03-31 2020-05-15
 United States SARS-CoV-2/human/USA/CA-CZB-1129/2020
 ATTAAA1- C241T C1059T C3037T C14408T A23403R G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_445179 MT474135
 2020-03-31 2020-05-15
 United States SARS-CoV-2/human/USA/CA-CZB-1131/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C14408T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_445226
 2020-03-31 2020-05-15
 Sweden hCoV-19/Sweden/20-06679/2020
 C241T C3037T C14195A C14408T A23403G C25665T

EPI_ISL_445887
 2020-03-31 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-2C639/2020
 A1- C241T C3037T C6990T C14408T A23403G C29200T

EPI_ISL_445938
 2020-03-31 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-2CA4C/2020
 G1440A G2891A G11083T C14016T G14055T C25669T G26660T G28851T

EPI_ISL_447129
 2020-03-31 2020-05-16
 Belgium hCoV-19/Belgium/ULG-0189/2020
 C241T GTTATG515- A618G C3037T G3994A C5694T C14408T C15324T A23403G

EPI_ISL_447155
 2020-03-31 2020-05-16
 Belgium hCoV-19/Belgium/ULG-10160/2020
 C241T C2113T C3037T C7765T C14408T T15225C C15928T C17690T C18877T A23403G G25563T

EPI_ISL_447384
 2020-03-31 2020-05-17
 Israel hCoV-19/Israel/2047883/2020
 C241T C2416T C3037T C14408T A23403G G25563T C26936T AAAAAAAAAAAA29892-

EPI_ISL_447406
 2020-03-31 2020-05-17
 Israel hCoV-19/Israel/2046129/2020
 C241T C1059T C3037T G7936T C11916T A13500G C14408T C18998T A23403G G25563T G29540A AAAAAAAAAAAA29892-

EPI_ISL_447529
 2020-03-31 2020-05-17
 Spain hCoV-19/Spain/Valencia/COV000611/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C313T C3037T C14408T A23403G G28541T GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_447531
 2020-03-31 2020-05-17
 Spain hCoV-19/Spain/Valencia/COV000613/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C16887T A20268G A23403G CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_447559
 2020-03-31 2020-05-17
 India hCoV-19/India/CCMB_J048/2020
 ATTAAAGGTTTATACCTT1- C1281T G3243T C6312A G11083T C13730T C23929T C28311T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_447560
 2020-03-31 2020-05-17
 India hCoV-19/India/CCMB_J043/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C6312A G11083T C13730T C23929T C28311T

EPI_ISL_447561
 2020-03-31 2020-05-17
 India hCoV-19/India/CCMB_J067/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C1707T C5184T C6312A G11083T C13730T C19524T C23929T C28311T

EPI_ISL_447562
 2020-03-31 2020-05-17
 India hCoV-19/India/CCMB_J068/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C6312A G11083T C13730T C23929T C28311T

EPI_ISL_447563
 2020-03-31 2020-05-17
 India hCoV-19/India/CCMB_J057/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C6312A C9933T A10888G G11083T A11456T C13730T C14198G C23929T C28311T

EPI_ISL_447754
 2020-03-31 2020-05-18
 Colombia hCoV-19/Colombia/GUR-1215/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C3037T A4393T C14408T A20268G A23403G T23443C AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_447755
 2020-03-31 2020-05-18
 Colombia hCoV-19/Colombia/GUV-92034/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T C3037T C5869T C11094T C14408T G15451A A20268G A23403G AATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29770-

EPI_ISL_447756
 2020-03-31 2020-05-18
 Colombia hCoV-19/Colombia/GUV-92042/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTT1- C241T C3037T C14408T A20268G A23403G G29734C AATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29770-

EPI_ISL_447757
 2020-03-31 2020-05-18
 Colombia hCoV-19/Colombia/GUV-92052/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C2676T C8782T C11620T C19263T G22186A C26088T T28144C AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_447759
 2020-03-31 2020-05-18
 Colombia hCoV-19/Colombia/GUV-92061/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C3037T C14408T A20268G A23403G AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_447760
 2020-03-31 2020-05-18
 Colombia hCoV-19/Colombia/GUV-92087/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C3037T C14408T A23403G A24862G AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_447762
 2020-03-31 2020-05-18
 Colombia hCoV-19/Colombia/GUV-92155/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T A476G C3037T C10507T G13723T C14408T C18877T A23403G G25563T C27741T GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_447763
 2020-03-31 2020-05-18
 Colombia hCoV-19/Colombia/GVI-92161/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCT1- C241T C3037T C10507T C14408T C18877T A23403G G25563T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_447765
 2020-03-31 2020-05-18
 Colombia hCoV-19/Colombia/GUV-92218/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C3037T G9190T C13730T C14408T C23170T A23403G G25429T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_447768
 2020-03-31 2020-05-18
 Colombia hCoV-19/Colombia/GUV-92256/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C1059T C3037T C14408T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_447835 MT459848
 2020-03-31 2020-05-11
 Greece SARS-CoV-2/human/GRC/54_37163/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_447847
 2020-03-31 2020-05-18
 India hCoV-19/India/CCMB_J045/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C2701T A6081G C6312A G11083T C13730T C22663A C23929T C28311T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_447862
 2020-03-31 2020-05-18
 India hCoV-19/India/CCMB_J047/2020
 ATTAAAGGTTTATACCTTCC1- G1820A C6310A C6312A G11083T C13730T C19524T C23929T C28311T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_448894
 2020-03-31 2020-05-19
 United Kingdom hCoV-19/England/SHEF-CF094/2020
 C241T C3037T C14408T C19170T G19509A A23403G A25405G G28077T GGG28881AAC

EPI_ISL_450486 MT394530
 2020-03-31 2020-04-27
 United States SARS-CoV-2/human/USA/CA-CZB-59X004/2020
 ATTA1- C9924T C23525Y AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_450487 MT394531
 2020-03-31 2020-04-27
 United States SARS-CoV-2/human/USA/CA-CZB-59X003/2020
 ATT1- C9924T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_450529
 2020-03-31 2020-05-21
 Poland hCoV-19/Poland/1111112/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C1204T A1515G G5572T C9223T G11083T G12052A C14805T T17247C C19983T G23678T G26144T CCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29801-

EPI_ISL_450731
 2020-03-31 2020-05-22
 Belgium hCoV-19/Belgium/ITM_C193/2020
 G1440A G2891A G5542A T15665C C28512T

EPI_ISL_450756
 2020-03-31 2020-05-22
 United States hCoV-19/USA/MN-MDH-287/2020
 A1- A2480G C2558T C10908T G11083T C14805T G26144T G28851C TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_450757
 2020-03-31 2020-05-22
 United States hCoV-19/USA/MN-MDH-288/2020
 ATTAAAGG1- A2480G C2558T C10908T G11083T C14805T G26144T G28851C TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_450758
 2020-03-31 2020-05-22
 United States hCoV-19/USA/MN-MDH-289/2020
 AT1- A2480G C2558T C10908T G11083T C14805T G26144T G28851C G29781T G29783T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_450769
 2020-03-31 2020-05-22
 United States hCoV-19/USA/MN-MDH-304/2020
 ATTAAAGGTTTA1- A2480G C2558T C10908T G11083T C14805T G26144T G28851C TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_450800 MT507277
 2020-03-31 2020-05-22
 United States SARS-CoV-2/human/USA/AR-CDC-2072/2020
 C241T C1059T C3037T C7528T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_450802 MT507282
 2020-03-31 2020-05-22
 United States SARS-CoV-2/human/USA/PA-CDC-8398/2020
 T490A C3177T C6040T C7321T C8782Y G12478A T18736C C24034T T26729C C26934A G28077C T28144C C28896G A29700G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_450808
 2020-03-31 2020-05-22
 Sweden hCoV-19/Sweden/20-06665/2020
 C241T C421T C3037T C14408T A23403G

EPI_ISL_450809
 2020-03-31 2020-05-22
 Sweden hCoV-19/Sweden/20-06695/2020
 C241T C3037T C14408T C15540T A23403G G25785T GGG28881AAC

EPI_ISL_451109
 2020-03-31 2020-05-23
 Australia hCoV-19/Australia/SAP072/2020
 C241T C1059T C3037T C10851T C14408T A23403G G25563T

EPI_ISL_451110
 2020-03-31 2020-05-23
 Australia hCoV-19/Australia/SAP073/2020
 C241T C2416T C3037T C14408T A23403G G25563T

EPI_ISL_451111
 2020-03-31 2020-05-23
 Australia hCoV-19/Australia/SAP074/2020
 ATTAA1- C241T C2416T C3037T C14408T A23403G G25563T

EPI_ISL_451112
 2020-03-31 2020-05-23
 Australia hCoV-19/Australia/SAP075/2020
 A1- C241T C2416T C3037T C14408T A23403G G25563T

EPI_ISL_451113
 2020-03-31 2020-05-23
 Australia hCoV-19/Australia/SAP076/2020
 A1- C241T C2416T C3037T C14408T A23403G G25563T

EPI_ISL_451114
 2020-03-31 2020-05-23
 Australia hCoV-19/Australia/SAP077/2020
 C241T C2416T C3037T C14408T A23403G G25563T

EPI_ISL_451115
 2020-03-31 2020-05-23
 Australia hCoV-19/Australia/SAP079/2020
 ATT1- C241T C3037T T7438C C14408T A23403G C29353T

EPI_ISL_451116
 2020-03-31 2020-05-23
 Australia hCoV-19/Australia/SAP080/2020
 C241T C2416T C3037T C14408T A23403G G25563T

EPI_ISL_451117
 2020-03-31 2020-05-23
 Australia hCoV-19/Australia/SAP081/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C2416T C3037T C14408T A23403G G25563T

EPI_ISL_451122
 2020-03-31 2020-05-23
 Australia hCoV-19/Australia/SAP087/2020
 ATTA1- C241T C3037T C6843T C14408T C17104T A20268G G23282T A23403G C29200T G29734C

EPI_ISL_451165
 2020-03-31 2020-05-23
 Belgium hCoV-19/Belgium/UGent-52/2020
 C241T C3037T C9246T C14408T T19839C A23403G C24099T C28528T GGG28881AAC TACAGTGAACAA29760-

EPI_ISL_451166
 2020-03-31 2020-05-23
 Belgium hCoV-19/Belgium/UGent-53/2020
 C241T C3037T G6109A C14408T C18877T A23403G G25563T

EPI_ISL_451805 LR824368
 2020-03-31 2020-05-25
 Switzerland 101138
 C241T C1059T C3037T A3116G C6648T C14408T G22424R A22489W A23403G G25563T C28472T

EPI_ISL_451806 LR824365
 2020-03-31 2020-05-25
 Switzerland 101139
 C241T C3037T C14408T G17014T A20268G C22350M T22397W T22516W A23403G G28368A C28854T

EPI_ISL_451807 LR824370
 2020-03-31 2020-05-25
 Switzerland 101140
 C241T C3037T C5239Y C5672T C14408T C17802T A23403G G25429T

EPI_ISL_451809 LR824369
 2020-03-31 2020-05-25
 Switzerland 101142
 G152R C241T C1426Y C3037T T5611Y T5674Y TT5712YY T5740Y T5941W G7850R T8859K A9717R T10076W G11087R C11812M AA12263RR AA12272RR A12299R A12377R A12405R C12638M C14408T C15324T T17603K C17801Y C20451Y C22347S C23103Y C23328M A23403G G26450T A27784W

EPI_ISL_451810 LR824371
 2020-03-31 2020-05-25
 Switzerland 101143
 T221Y C241T C355Y G1167K A1367W T2820Y AG3003WK C3037T AA3180WW C3686A G5629K T6274W C6664Y T7153Y A7163R T7274W C7279Y G8131K T8235K G8346K G8498K T10792K T10942W C11036Y T12055Y C12576Y C14178Y C14408T C14645Y T14709K C14913Y C15324T C16611Y G17964K T19187Y G21186R G21193K C21327Y C21691T C22062Y T22516W A23403G C23859Y T24364Y C25791Y G26199K CA29187YR C29679Y

EPI_ISL_451812 LR824378
 2020-03-31 2020-05-25
 Switzerland 101145
 C241T C1059T C3037T C7267Y C10604T C14408T C19402Y A19426W A23403G G25563T

EPI_ISL_451813 LR824383
 2020-03-31 2020-05-25
 Switzerland 101146
 C241T C3037T C4543Y C14408T C15324T C19343Y G19490K A19548R A23403G G29262T C29509T

EPI_ISL_451817 LR824379
 2020-03-31 2020-05-25
 Switzerland 101150
 C241T C3037T A5257W C7735T A8223R G13571K C14408T C15324T A19298W T19332Y G22380K A23403G C26885Y

EPI_ISL_451821 LR824381
 2020-03-31 2020-05-25
 Switzerland 101155
 C241T C3037T C4886M G7273K T7305K C14408T C15324T A16210W A19298W T19372Y T19378W T19475W A23403G

EPI_ISL_451822 LR824391
 2020-03-31 2020-05-25
 Switzerland 101156
 C241T C313T C3037T C9246Y C14408T C22347S A23403G GGG28881AAC

EPI_ISL_451824 LR824385
 2020-03-31 2020-05-25
 Switzerland 101158
 C241T C1059T C3037T A3116G C14408T A19298W G19423R T19432Y G19518K G22381K G22462R A22474M T22516W A23403G G25563T G28300R

EPI_ISL_451826 LR824390
 2020-03-31 2020-05-25
 Switzerland 101160
 C241T C1469S T1531Y A1982W C3037T C3656Y T5059Y A6911W C9891Y G14371K C14408T C15324T G16975S A19307R C19360M T19503Y C21871Y C22347S T22516W G22652K T22756Y A23403G C24223Y C24382T C26752Y G28968S G29239K A29567R

EPI_ISL_451829 LR824386
 2020-03-31 2020-05-25
 Switzerland 101165
 C241T C3037T C14408T C15324T G19446K G19478K G22409R A23403G T23489C

EPI_ISL_451832 LR824400
 2020-03-31 2020-05-25
 Switzerland 101168
 C241T C3037T C14408T C15324T T22516W A23403G G26152R G28073K G28198K

EPI_ISL_451833 LR824395
 2020-03-31 2020-05-25
 Switzerland 101170
 C241T C346T C3037T C6628Y C14408T A19298W C22264Y T22516W A23403G

EPI_ISL_451834 LR824392
 2020-03-31 2020-05-25
 Switzerland 101171
 C241T C3037T T3477Y C4158Y C9967T C14408T C15324T T22516W A23403G

EPI_ISL_451835 LR824393
 2020-03-31 2020-05-25
 Switzerland 101172
 A30W C241T C635Y C3037T G4727S C6941Y G8522K T10003K G10105S C14408T G16013K G20170K C20178Y A20180M G21228S C22347S T22433K G22462K T22516W A23403G GGG28881AAC G29540T A29552R

EPI_ISL_451837 LR824398
 2020-03-31 2020-05-25
 Switzerland 101174
 C241T C280T C1059T C3037T A3116G A3660C C14408T T19503Y A19540R C19545M T22357Y A23403G G25563T G28881R

EPI_ISL_451839 LR824402
 2020-03-31 2020-05-25
 Switzerland 101177
 C241T C3037T C14408T A19298W T19479W T22514Y A23403G

EPI_ISL_451840 LR824404
 2020-03-31 2020-05-25
 Switzerland 101178
 C241T G768K G840S T1863Y C3037T A3934R T4031Y A4244R A4659R A4762R G5399S G5437K A5541R G5605R C6145Y G6622R T7605Y C10537Y C10802M TG11092YS G12067K G12382K G13202S A13396R C14408T C15540Y G15913K C16057Y G17019R A19650R C20863Y T21790Y G22218S A22407M A22474M T22516W C22747Y T23338K C23399Y A23403G A24037R G24291S G25459K T25478Y T27053Y T27308Y A27333M GGG28881AAC G29134K G29560K C29640Y A29694W T29748K T29826K

EPI_ISL_451843 LR824405
 2020-03-31 2020-05-25
 Switzerland 101181
 C241T C3037T G5037R A5257W C14408T C15324T C15738T A19298W G19486R T21223W T21471Y A21489M C21658M A23403G

EPI_ISL_451844 LR824409
 2020-03-31 2020-05-25
 Switzerland 101182
 C241T G1126K C1973M G2001K C3037T G3638R G3815K G4288K G4504S G4963S A5064W G6060S G6642K G6879K T7084W T9229Y G10618K G10643R G10870K A10973R G12613S C12621Y G12838R G12930R C14408T G14948K C15324T C16551Y C16922Y C19322M A19754M C19983Y G20274K C20972Y C21005Y C22347S T22479Y T22516W G23067R C23360Y A23403G C23609Y G24959R G25212K T27733K

EPI_ISL_451848 LR824401
 2020-03-31 2020-05-25
 Switzerland 101186
 C241T C1059T C3037T A3116G C14408T C19269T G19406R A19409R T22367K A22415M A23403G G25563T C29774A

EPI_ISL_451852 LR824413
 2020-03-31 2020-05-25
 Switzerland 101190
 C241T T627K G1401K T1651Y G1730R AA1903WW A2317W C2607Y C3037T T3982Y C4002Y A5177R G5605R C5866Y T6605Y C6696Y A7184R T11635Y G11722K T11798Y A14007R C14327M C14408T C14524Y T14704Y C15324T T15926Y T15996Y T16029Y T16059Y T16090Y T16103Y T16147Y T16155Y T16167Y T16258K C16883Y T19473Y G20160K C22347M A22956R T23113Y A23403G G24040K T24475K T25272Y G25522K T25556Y T27318W

EPI_ISL_451853 LR824412
 2020-03-31 2020-05-25
 Switzerland 101191
 C241T C3037T G13567A C14408T A19459R A19548R C21575Y A23403G GGG28881AAC

EPI_ISL_451854 LR824414
 2020-03-31 2020-05-25
 Switzerland 101192
 C241T C3037T C14408T C15324T C17326T C18029Y G19312K G19327K T19485W A19535W A19548R A23403G G25244T G28690T G28985R G29543K

EPI_ISL_451855 LR824419
 2020-03-31 2020-05-25
 Switzerland 101193
 C241T T580K C1059T T1532Y C3037T G3470R C3884Y G5233R T5928W G6553S G7289S T9340W C9866M C9907Y C10202Y C10209Y G11743K T11791W G12844R T13632W A13871R T14027Y C14408T C14657Y T16553Y A16672W G16943S G18367K T19344Y G19990S C20148Y G20160R G20171R A20386W A21345W C21575Y G22094K G22409K G22421K T22449K A23403G G24154K T25414C G25563T C25976M T26345Y C27577Y G28077K T28424Y

EPI_ISL_451973 MT511068
 2020-03-31 2020-05-26
 Poland SARS-CoV-2/human/POL/PL_P12/2020
 C19T C106T C241T C3037T C8025T A8072G C14408T A23403G GGG28881AAC C29870M

EPI_ISL_451975 MT511070
 2020-03-31 2020-05-26
 Poland SARS-CoV-2/human/POL/PL_P14/2020
 C19T C106T C241T C3037T A8072G C14408T A23403G GGG28881AAC C29870M

EPI_ISL_451979 MT511074
 2020-03-31 2020-05-26
 Poland SARS-CoV-2/human/POL/PL_P18/2020
 C241T C3037T C14408T G14580T A23403G G29477T C29870M

EPI_ISL_452187
 2020-03-31 2020-05-27
 Italy hCoV-19/Italy/VR_20COV31-18/2020
 AT1- C241T C3037T C14408T A23403G GGG28881AAC TGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29785-

EPI_ISL_452188
 2020-03-31 2020-05-27
 Italy hCoV-19/Italy/VR_20COV31-19/2020
 A1- C241T C3037T C14408T A23403G GGG28881AAC C29311T TGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29785-

EPI_ISL_453939
 2020-03-31 2020-05-28
 Portugal hCoV-19/Portugal/PT0225/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- C241T C3037T C14408T A23403G T24364C GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_453942
 2020-03-31 2020-05-28
 Portugal hCoV-19/Portugal/PT0228/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- C241T C3037T C3140T C4090T C14408T A23403G G24077T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_453943
 2020-03-31 2020-05-28
 Portugal hCoV-19/Portugal/PT0229/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- C241T C3037T C3140T C4090T C14408T A23403G G24077T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_453944
 2020-03-31 2020-05-28
 Portugal hCoV-19/Portugal/PT0230/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- C241T C3037T C3140T G3719A C14408T A22359G A23403G G24077T T28705C C29555T AGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29687-

EPI_ISL_453946
 2020-03-31 2020-05-28
 Portugal hCoV-19/Portugal/PT0232/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- C241T C3037T C3045T C3140T C14408T A23403G G24077T C29555T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_453947
 2020-03-31 2020-05-28
 Portugal hCoV-19/Portugal/PT0233/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- C241T C3037T C3140T C14408T A23403G G24077T T28705C C29555T AGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29776-

EPI_ISL_453951
 2020-03-31 2020-05-28
 Portugal hCoV-19/Portugal/PT0237/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- C241T C3037T C3140T C14408T G21761T A23403G G24077T T28705C C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_453958
 2020-03-31 2020-05-28
 Portugal hCoV-19/Portugal/PT0244/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454154
 2020-03-31 2020-05-28
 Portugal hCoV-19/Portugal/PT0430/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- C241T C1059T C3037T C14408T G20560A G22201T A23403G G25217T G25563T CGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29754-

EPI_ISL_454208
 2020-03-31 2020-05-28
 Portugal hCoV-19/Portugal/PT0484/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- C241T C3037T C14408T G22104T A23403G A24862G CGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29754-

EPI_ISL_454350
 2020-03-31 2020-05-28
 Portugal hCoV-19/Portugal/PT0627/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C593T C3037T C14408T A20268G A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454356
 2020-03-31 2020-05-28
 United States hCoV-19/USA/PA-MGEL66/2020
 C241T C3037T A4595G C14408T T19839C A23403G GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_454368
 2020-03-31 2020-05-28
 United States hCoV-19/USA/PA-MGEL84/2020
 C241T C1059T C3037T C12809T C14408T A23403G G25563T C26625T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_454372
 2020-03-31 2020-05-28
 United States hCoV-19/USA/PA-MGEL89/2020
 C241T C1059T C3037T C14408T C15319T C21638T A23403G G25563T C29466T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_454373
 2020-03-31 2020-05-28
 United States hCoV-19/USA/PA-MGEL91/2020
 C241T C745T C1059T C3037T C11916T C14408T A23403G G25563T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_454376
 2020-03-31 2020-05-28
 United States hCoV-19/USA/PA-MGEL96/2020
 C241T C3037T C14408T G16975T A23403G T27299C A27486G GGG28881AAC T29148C GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_454378
 2020-03-31 2020-05-28
 United States hCoV-19/USA/PA-MGEL98/2020
 C241T C313T C3037T C14408T A23403G GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_454382
 2020-03-31 2020-05-28
 United States hCoV-19/USA/PA-MGEL103/2020
 C241T C1059T C3037T C12809T C14408T A23403G G25563T C26625T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_454383
 2020-03-31 2020-05-28
 United States hCoV-19/USA/PA-MGEL104/2020
 C241T C1059T C3037T C6997T C14408T A23403G G23608T G25563T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_454384
 2020-03-31 2020-05-28
 United States hCoV-19/USA/PA-MGEL107/2020
 T490A C3177T C6040T C8782T G12478A T18736C C24034T T26729C G28077C T28144C C28896G A29700G GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_454565
 2020-03-31 2020-05-28
 India hCoV-19/India/NIV-QA-710/2020
 C241T C3037T G8371T C14408T A23403G GGG28881AAC A29827T G29830T

EPI_ISL_454605
 2020-03-31 2020-05-28
 Croatia hCoV-19/Croatia/8U-S17new/2020
 C241T C1059T C3037T G10091A C14408T A23403G G25563T C27367T AAAAAAAAAAAAAAAAAAA29885-

EPI_ISL_454793
 2020-03-31 2020-05-29
 Netherlands hCoV-19/Netherlands/Utrecht_10044/2020
 ATTA1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC AAAAAA29898-

EPI_ISL_455100
 2020-03-31 2020-05-29
 Sweden hCoV-19/Sweden/20-06761/2020
 C241T C3037T C14408T A23403G C27769T GGG28881AAC

EPI_ISL_455112
 2020-03-31 2020-05-29
 Netherlands hCoV-19/Netherlands/Flevoland_3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A3234G T7020G T13006C C14408T C20964T A23403G G25563T C25688T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455114
 2020-03-31 2020-05-29
 Netherlands hCoV-19/Netherlands/Friesland_11/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T1570C G11083T C14805T T17247C G26144T G28086T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455115
 2020-03-31 2020-05-29
 Netherlands hCoV-19/Netherlands/Friesland_12/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C5512T A6371G C6738T C11109T C14408T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455116
 2020-03-31 2020-05-29
 Netherlands hCoV-19/Netherlands/Friesland_13/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1959T C3037T C14408T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455117
 2020-03-31 2020-05-29
 Netherlands hCoV-19/Netherlands/Friesland_14/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C7002T C11109T T12319A C13115T C14408T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455118
 2020-03-31 2020-05-29
 Netherlands hCoV-19/Netherlands/Friesland_15/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A513G C3037T G4649T C14408T C21627T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455196
 2020-03-31 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_394/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A24862G T26187C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455222
 2020-03-31 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_420/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C478T AAGTCATTT686- C3037T G6337A G12550A C14408T A20268G C20740A A23403G G29734C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455280
 2020-03-31 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_478/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C478T C3037T G12550A C14408T A20268G C20740A A23403G C28826T G29734C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455636
 2020-03-31 2020-06-01
 South Africa hCoV-19/SouthAfrica/KRISP-106/2020
 C241T C3037T C14408T C16376T A23403G C24034T

EPI_ISL_455639
 2020-03-31 2020-06-01
 South Africa hCoV-19/SouthAfrica/KRISP-109/2020
 C241T C3037T A8449C C13115T C14408T C20234T A23403G GGG28881AAC

EPI_ISL_455641
 2020-03-31 2020-06-01
 India hCoV-19/India/S7/2020
 C6310A C6312A G11083T T12757C C13730T C19524T C23929T C28311T

EPI_ISL_455704
 2020-03-31 2020-06-01
 Vietnam hCoV-19/Vietnam/VNHN_3916/2020
 C241T C3037T C14408T T19839C A23403G GGG28881AAC C28905T

EPI_ISL_455705
 2020-03-31 2020-06-01
 Vietnam hCoV-19/Vietnam/VNHN_3913/2020
 C241T C3037T C14408T T19839C A23403G GGG28881AAC C28905T

EPI_ISL_455727
 2020-03-31 2020-06-01
 Spain hCoV-19/Spain/Gandia661/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C14408T A23403G C29144T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_456287
 2020-03-31 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1860/2020
 C241T C1059T C3037T C14408T C16260T A23403G G25563T C28821A

EPI_ISL_456292
 2020-03-31 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1867/2020
 C241T C1059T C3037T C14408T C16260T A23403G G25563T C28821A

EPI_ISL_456308
 2020-03-31 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1917/2020
 C241T C1059T C3037T C14408T C16260T A23403G G25563T C28821A

EPI_ISL_456955
 2020-03-31 2020-06-02
 United Kingdom hCoV-19/Scotland/EDB5051/2020
 C241T C3037T T7216C C14408T C16468T A23403G G25012T GGG28881AAC

EPI_ISL_457013
 2020-03-31 2020-06-02
 United Kingdom hCoV-19/Scotland/EDB554/2020
 C241T C3037T C14408T A23403G C25433T

EPI_ISL_457052
 2020-03-31 2020-06-02
 United Kingdom hCoV-19/England/EXET-135371/2020
 C241T C3037T A13456G C14408T A23403G GGG28881AAC

EPI_ISL_457089
 2020-03-31 2020-06-02
 United Kingdom hCoV-19/England/EXET-1356F0/2020
 G11083T G13998T C14805T T17247C G26144T G28975T

EPI_ISL_457101
 2020-03-31 2020-06-02
 United Kingdom hCoV-19/England/EXET-1357EE/2020
 C241T C3037T C14322T C14408T A20268G A23403G

EPI_ISL_457126
 2020-03-31 2020-06-02
 United Kingdom hCoV-19/England/EXET-135A12/2020
 C3037T C14408T A20268G A23403G

EPI_ISL_457139
 2020-03-31 2020-06-02
 United Kingdom hCoV-19/England/EXET-135B88/2020
 C241T C3037T C14408T A23403G C25350T

EPI_ISL_457150
 2020-03-31 2020-06-02
 United Kingdom hCoV-19/England/EXET-135C76/2020
 C241T C3037T C8386T C14408T C22227T C22295T A23403G GGG28881AAC

EPI_ISL_458233
 2020-03-31 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0331263/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458234
 2020-03-31 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0331264/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C106T C241T C3037T A11762G A11839G C14408T T19839C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458448
 2020-03-31 2020-06-04
 United Kingdom hCoV-19/England/BRIS-1298CC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458455
 2020-03-31 2020-06-04
 United Kingdom hCoV-19/England/BRIS-12989F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C20790T A23014G A23403G T27222C C28332M GGG28881AAC C29640T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458605
 2020-03-31 2020-06-04
 United Kingdom hCoV-19/England/NORT-289744/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G22093A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458635
 2020-03-31 2020-06-04
 United Kingdom hCoV-19/England/NORT-289717/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3475C C14408T C14786T A23403G T26130C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_460012
 2020-03-31 2020-06-05
 United States hCoV-19/USA/MI-MDHHS-SC20473/2020
 C241T C1059T C3037T C11497T C14408T A23403G G25563T

EPI_ISL_460017
 2020-03-31 2020-06-05
 United States hCoV-19/USA/MI-MDHHS-SC20478/2020
 C241T C1059T C3037T C6573T C14408T A23403G G25563T C27476Y

EPI_ISL_460018
 2020-03-31 2020-06-05
 United States hCoV-19/USA/MI-MDHHS-SC20479/2020
 C241T C1059T C3037T TT7156AC G7160C C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_460020
 2020-03-31 2020-06-05
 United States hCoV-19/USA/MI-MDHHS-SC20481/2020
 C241T G932K C1059T C3037T C14408T A20138G A23403G G25563T

EPI_ISL_460021
 2020-03-31 2020-06-05
 United States hCoV-19/USA/MI-MDHHS-SC20482/2020
 C241T C1059T C3037T C14408T A23403G T24832C G25563T

EPI_ISL_460025
 2020-03-31 2020-06-05
 United States hCoV-19/USA/MI-MDHHS-SC20486/2020
 C241T C1059T C3037T C14408T A23403G G25563T C25976A

EPI_ISL_460026
 2020-03-31 2020-06-05
 United States hCoV-19/USA/MI-MDHHS-SC20487/2020
 C241T C1059T C3037T C14408T A23403G G25563T C25976A AAAAAAA29897-

EPI_ISL_460028
 2020-03-31 2020-06-05
 United States hCoV-19/USA/MI-MDHHS-SC20489/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAA29901-

EPI_ISL_460625
 2020-03-31 2020-06-06
 United States hCoV-19/USA/WA-UW-4570/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGT1- C8782T C17747T A17858G C18060T TTA21991- CTTGCTCTTCTGGAACATACGAGGGCAATTCACCATTTCATCCTCTAGCTGATAACAAATTTGCACTGACTTGCTTTAGCACTCAATTTGCTTTTGCTTGTCCTGACGGCGTAAAACACGTCTATCAGTTACGTGCCAGATCAGTTTCACCTAAACTGTTCATCAGACAAGAGGAAGTTCAAGAACTTTACTCTCCAATTTTTCTTATTGTTGCGGCAATAGTGTTTATAACACTTTGCTTCACACTCAAAAGAAAGACAGAATGATTGAACTTTCATTAATTGACTTCTATTTGTGCTTTTTAGCCTTTCTGCTATTCCTTGTTTTAATTATGCTTATTATCTTTTGGTTCTCACTTGAACTGCAAGATCATAATGAAACTTGTCACGCCT27494- T28144C GCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29742-

EPI_ISL_460675
 2020-03-31 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_502/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4255T C14408T A23403G C24865T C26125T A26530G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461076
 2020-03-31 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_641/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C23709T A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461077
 2020-03-31 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_642/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C23709T A24036G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461078
 2020-03-31 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_643/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C23709T A24862G C28005T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461079
 2020-03-31 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_644/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C23709T A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461082
 2020-03-31 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_647/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C23709T A24036G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461128
 2020-03-31 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_693/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10870T C14408T G20275A A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461164
 2020-03-31 2020-06-06
 Netherlands hCoV-19/Netherlands/NoordBrabant_129/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461250
 2020-03-31 2020-06-06
 Netherlands hCoV-19/Netherlands/Zeeland_12/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4255T C14408T A23403G A25383G A26530G C28546T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461261
 2020-03-31 2020-06-06
 Netherlands hCoV-19/Netherlands/Zeeland_22/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4255T C14408T A23403G C24865T C26125T A26530G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461423
 2020-03-31 2020-06-06
 United States hCoV-19/USA/WA-UW-4117/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- C36T T85C C241T C1059T C3037T C14408T T21146A A23403G G25563T G29553A -29904AAAAAAAAAAAAAA

EPI_ISL_461443 MT683405
 2020-03-31 2020-06-06
 United States SARS-CoV-2/human/USA/WA-UW-5812/2020
 ATTAAAGGTT1- AAC34TTT C241T C1059T C3037T C14408T A23403G G25563T CACCATTTCATCCTCTAGCTGATAACAAATTTGCACTGACTTGCTTTAGCACTCAATTTGCTTTTGCTTGTCCTGACGGCGTAAAACACGTCTATCAGTTACGTGCCAGATCAGTTTCACCTAAACTGTTCATCAGACAAGAGGAAGTTCAAGAACTTTACTCTCCAATTTTTCTTATTGTTGCGGCAATAGTGTTTATAACACTTTGCTTCACACTCAAAAGAAAG27524- G29553A A29903-

EPI_ISL_461444
 2020-03-31 2020-06-06
 United States hCoV-19/USA/WA-UW-5847/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- C241T C1059T C3037T C14408T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_461445 MT683406
 2020-03-31 2020-06-06
 United States SARS-CoV-2/human/USA/WA-UW-5860/2020
 ATTAAA1- C36T C913T C5784T C8782T C9836T C17747T A17858G C18060T A22036C T28144C G28221C C28344T G29864A TG29867AA C29870A

EPI_ISL_461733
 2020-03-31 2020-06-06
 United Kingdom hCoV-19/Scotland/EDB5381/2020
 C241T C2841T C3037T C10798A C13862T C14408T A23403G C28836T

EPI_ISL_461761
 2020-03-31 2020-06-06
 United Kingdom hCoV-19/Scotland/EDB608/2020
 C241T C3037T C14408T A23403G C25433T

EPI_ISL_462150
 2020-03-31 2020-06-07
 Russia hCoV-19/Russia/CRIE162784/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T C3373A C6883T C14408T G21724A A23403G GGG28881AAC AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_462213
 2020-03-31 2020-06-08
 Belgium hCoV-19/Belgium/BS-0331359/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462214
 2020-03-31 2020-06-08
 Belgium hCoV-19/Belgium/SN-0331360/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G C25433T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462215
 2020-03-31 2020-06-08
 Belgium hCoV-19/Belgium/BS-0331361/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A3859G G11083T C14805T T17247C G26144T A29598G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462216
 2020-03-31 2020-06-08
 Belgium hCoV-19/Belgium/BD0331362/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A16992G T18495C A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462231
 2020-03-31 2020-06-08
 Belgium hCoV-19/Belgium/LL-0331377/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G12769T C14408T T23287C A23403G A23870G C27532T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462232
 2020-03-31 2020-06-08
 Belgium hCoV-19/Belgium/SC-0331378/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G15380T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462233
 2020-03-31 2020-06-08
 Belgium hCoV-19/Belgium/VPP-0331379/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C3037T A3269C C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462350
 2020-03-31 2020-06-08
 Singapore hCoV-19/Singapore/232/2020
 T490A C3177T C8782T T18736C G19684T T21955Y C24034T T26729C C27635T G28077C T28144C A29700R AAAAAAAAAAAA29892-

EPI_ISL_463006 MT499220
 2020-03-31 2020-05-20
 Tunisia SARS-CoV-2/human/TUN/COV1482/2020
 ATTAAAGGTTTA1- T17C C241T C1059T T1666C C3037T C14408T A23403G G25563T GG28346TT T29811C A29813G T29817G T29822C A29824C CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_463940
 2020-03-31 2020-06-11
 Canada hCoV-19/Canada/QC_AT3/2020
 C241T C3037T A7040G C14408T C15324T A23403G C25433T

EPI_ISL_465922
 2020-03-31 2020-06-11
 United Kingdom hCoV-19/England/20142015404/2020
 C241T C3037T C14408T A23403G G28851T GGG28881AAC C29870M

EPI_ISL_465971
 2020-03-31 2020-06-11
 United Kingdom hCoV-19/England/20144000104/2020
 C241T C3037T C4002T G10097A C13536T C14184T C14408T C15738Y C21058T A23403G C23731T GGG28881AAC

EPI_ISL_465973
 2020-03-31 2020-06-11
 United Kingdom hCoV-19/England/20144003904/2020
 G11083T A11782G C14805T T17247C G26144T

EPI_ISL_465975
 2020-03-31 2020-06-11
 United Kingdom hCoV-19/England/20144009404/2020
 C241T C3037T C14408T C18681T C20199T G21204T A23403G C28657Y GGG28881AAC

EPI_ISL_465999
 2020-03-31 2020-06-11
 United Kingdom hCoV-19/England/20144037104/2020
 A2480G C2558T C7011T G11083T G11405A C14805T G26144T C28869T A29871G

EPI_ISL_466000
 2020-03-31 2020-06-11
 United Kingdom hCoV-19/England/20144037904/2020
 C241T C313T C3037T C14408T A23403G C25844Y G27382T GGG28881AAC

EPI_ISL_466001
 2020-03-31 2020-06-11
 United Kingdom hCoV-19/England/20144050404/2020
 C241T C3037T G10097A T13216G C14408T C18486T C21233T A23403G C23731T G25647T GGG28881AAC

EPI_ISL_466002
 2020-03-31 2020-06-11
 United Kingdom hCoV-19/England/20144052804/2020
 C241T C1059T C3037T G3692T C11575T C14408T G16065T A23403G G25563T C25919Y A29782R

EPI_ISL_466003
 2020-03-31 2020-06-11
 United Kingdom hCoV-19/England/20144057404/2020
 C241T C3037T C14408T A23403G GGG28881AAC G29868R

EPI_ISL_466030
 2020-03-31 2020-06-11
 United Kingdom hCoV-19/England/20146013904/2020
 C241T C3037T C4002T G10097A C13536T C14408T G22487C G22763K A23403G C23731T GGG28881AAC

EPI_ISL_466040
 2020-03-31 2020-06-11
 United Kingdom hCoV-19/England/20146021204/2020
 G11083T C14805T T17247C G26144T C26447T

EPI_ISL_466054
 2020-03-31 2020-06-11
 United Kingdom hCoV-19/England/20148032904/2020
 G105T C241T C3037T C14408T A23403G C28720T

EPI_ISL_466113
 2020-03-31 2020-06-11
 United Kingdom hCoV-19/England/20149005904/2020
 C241T C635T C3037T C14408T A23403G C25350T

EPI_ISL_466122
 2020-03-31 2020-06-11
 United Kingdom hCoV-19/England/20149006904/2020
 C241T G246T C3037T C5173T C14408T G17280C G21776T A23403G GGG28881AAC

EPI_ISL_466129
 2020-03-31 2020-06-11
 United Kingdom hCoV-19/England/20149007604/2020
 C241T C1059T C1437T C3037T A6431G T13006C C14408T A23403G G25563T C25688T G29374A

EPI_ISL_466146
 2020-03-31 2020-06-11
 United Kingdom hCoV-19/England/20149009404/2020
 C241T C3037T G11391K G11405K C14408T G20709K C22617Y A23403G GGG28881AAC

EPI_ISL_466149
 2020-03-31 2020-06-11
 United Kingdom hCoV-19/England/20149009704/2020
 C241T C3037T C14408T T15930K A23403G GGG28881AAC

EPI_ISL_467774
 2020-03-31 2020-06-15
 Russia hCoV-19/Russia/CRIE163844/2020
 ATTAAAGGTTTA1- C241T C2416T C3037T G8371T C14408T C18570T A23403G G25563T AGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29776-

EPI_ISL_468006
 2020-03-31 2020-06-16
 Australia hCoV-19/Australia/SAP302/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C4540T C8782T T9477A C14805T A17758G G25979T T28144C C28311T C28657T C28863T A29598G

EPI_ISL_468035
 2020-03-31 2020-06-16
 Australia hCoV-19/Australia/SAP285/2020
 ATTAAAG1- C241T C3037T C14408T C18570T A23403G C24418T GGG28881AAC

EPI_ISL_468041
 2020-03-31 2020-06-16
 Australia hCoV-19/Australia/SAP012/2020
 C241T C3037T C6843T C14408T C17104T A20268G G23282T A23403G C29200T G29734C

EPI_ISL_468043
 2020-03-31 2020-06-16
 Australia hCoV-19/Australia/SAP268/2020
 G1440A G2891A C28868T

EPI_ISL_468528 MT628251
 2020-03-31 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1599/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C4055Y C8782T C10416T G11083K C17747T A17858G C18060T G27157K T28144C

EPI_ISL_469103
 2020-03-31 2020-06-17
 Singapore hCoV-19/Singapore/348/2020
 C6310A C6312A C10450Y G11083T C13730T A14199R C19524T C23929T T27588A C28311T AAAAAAAAAAAA29892-

EPI_ISL_469104
 2020-03-31 2020-06-17
 Singapore hCoV-19/Singapore/349/2020
 C6310A C6312A G8706K G11083T C13730T C19524T C23929T T27588A C28311T AAAAAAAAAAAA29892-

EPI_ISL_469121
 2020-03-31 2020-06-17
 Singapore hCoV-19/Singapore/366/2020
 C33M C6310A C6312A G11083T C13730T C19524T C23929T T27588A C28311T AAAAAAAAAAAA29892-

EPI_ISL_469279
 2020-03-31 2020-06-18
 United Arab Emirates hCoV-19/United Arab Emirates/L5857/2020
 C884T G1397A A3078G G8653T G11083T A19073G G27915T T28688C C28868T C29077T G29742T

EPI_ISL_469577
 2020-03-31 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12758B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G13765K C14408T A23403G GGG28881AAC C29420T TAGTA29823- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469950
 2020-03-31 2020-06-18
 United Kingdom hCoV-19/Scotland/GCVR-1720BD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C12710T C22624T C25000T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_470830
 2020-03-31 2020-06-19
 Australia hCoV-19/Australia/WA12/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C241T C3037T C14408T A23403G CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_471266
 2020-03-31 2020-06-19
 United States hCoV-19/USA/WI-WSLH-200102/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17747T A17858G C18060T C18646T A24694T T26906C T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471456
 2020-03-31 2020-06-22
 Morocco hCoV-19/Morocco/HMIMV-Rabat102-03/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C1684T C3037T G6404T C8208T C14408T C15324T G21578T G22363T A23403G C29362T AGGAGAATGA29860- A29886G AAAAAAAAA29895-

EPI_ISL_471959
 2020-03-31 2020-06-23
 United Kingdom hCoV-19/England/EXET-1372CD/2020
 C241T C3037T C14408T A23403G C23520T G25429T C25916T C26060T

EPI_ISL_475116
 2020-03-31 2020-06-23
 Sweden hCoV-19/Sweden/20-08722/2020
 C241T C3037T C14408T A23403G A26530G

EPI_ISL_475146
 2020-03-31 2020-06-23
 Sweden hCoV-19/Sweden/20-50552/2020
 C241T C1059T A1399G C3037T G7936T C14408T G20002T A23403G G25563T

EPI_ISL_475147
 2020-03-31 2020-06-23
 Sweden hCoV-19/Sweden/20-50556/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_475279
 2020-03-31 2020-06-23
 United Kingdom hCoV-19/England/PORT-2D0D6A/2020
 C241T C3037T C14408T G16068C A23403G C25350T

EPI_ISL_475280
 2020-03-31 2020-06-23
 United Kingdom hCoV-19/England/PORT-2D0D79/2020
 C1457T A2480G C2558T T11077C G11083T C14805T C18744T G26144T T27384C

EPI_ISL_475285
 2020-03-31 2020-06-23
 United Kingdom hCoV-19/England/PORT-2D0DC4/2020
 C241T C3037T C14408T A23403G C25528T GGG28881AAC

EPI_ISL_475289
 2020-03-31 2020-06-23
 United Kingdom hCoV-19/England/PORT-2D0E0D/2020
 C241T C3037T C14408T C16289T A23403G G25429T

EPI_ISL_475297
 2020-03-31 2020-06-23
 United Kingdom hCoV-19/England/PORT-2D0E85/2020
 C241T C3037T C14408T A23403G G25429T C25710T C25916T C29614T

EPI_ISL_475299
 2020-03-31 2020-06-23
 United Kingdom hCoV-19/England/PORT-2D0EA3/2020
 C241T C3037T C14408T A23403G G24781T GGG28881AAC

EPI_ISL_475656
 2020-03-31 2020-06-23
 United States hCoV-19/USA/CA-CSMC44/2020
 C241T C379A C1059T C1594T C3037T A10982C C14408T A23403G G25563T G28827T

EPI_ISL_475657
 2020-03-31 2020-06-23
 United States hCoV-19/USA/CA-CSMC45/2020
 C241T C3037T C14408T C18877T A23403G G25563T

EPI_ISL_475792
 2020-03-31 2020-06-25
 Austria hCoV-19/Austria/CeMM0321/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C26461T C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475822
 2020-03-31 2020-06-25
 Austria hCoV-19/Austria/CeMM0379/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8293T A11839G C14408T C16575T T19839C A23403G GGG28881AAC C29144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475823
 2020-03-31 2020-06-25
 Austria hCoV-19/Austria/CeMM0380/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8293T A11839G C14408T C16575T T19839C A23403G G26428K GGG28881AAC C29144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475893
 2020-03-31 2020-06-25
 Austria hCoV-19/Austria/CeMM0521/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3264T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475911
 2020-03-31 2020-06-25
 Austria hCoV-19/Austria/CeMM0560/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475914
 2020-03-31 2020-06-25
 Austria hCoV-19/Austria/CeMM0564/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T19839C A23403G C24099T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476023
 2020-03-31 2020-06-25
 India hCoV-19/India/DRDE115/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGC1- C6312A T11045C A14351G C19675A T25633C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_477706
 2020-03-31 2020-06-29
 United States hCoV-19/USA/WA-UW-2270/2020
 ATTAAAGGTTTAT1- A14W C19T CAGGTAACAAACCAACC21- C241T C1059T C3037T C9195T C14408T A23403G G25563T T27553C G29553A -29904AAAA

EPI_ISL_478417
 2020-03-31 2020-06-30
 United Kingdom hCoV-19/England/LOND-D6C87/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2937T C3037T C14408T A20268G A23403G ATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29815-

EPI_ISL_478418
 2020-03-31 2020-06-30
 United Kingdom hCoV-19/England/LOND-D6C96/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC ATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29815-

EPI_ISL_478419
 2020-03-31 2020-06-30
 United Kingdom hCoV-19/England/LOND-D6CA5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A26530G ATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29815-

EPI_ISL_478420
 2020-03-31 2020-06-30
 United Kingdom hCoV-19/England/LOND-D6CB4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3234G T4946G C14408T A23403G GGG28881AAC ATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29815-

EPI_ISL_478421
 2020-03-31 2020-06-30
 United Kingdom hCoV-19/England/LOND-D6CC3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G ATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29815-

EPI_ISL_478422
 2020-03-31 2020-06-30
 United Kingdom hCoV-19/England/LOND-D6CD2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C13487T C14408T C14786T G20578T A23403G G25563T ATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29815-

EPI_ISL_479620
 2020-03-31 2020-06-30
 Russia hCoV-19/Russia/CRIE182061/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C2509T C3037T C3903T T12877C C14408T A23403G C24863T GGG28881AAC CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_479621
 2020-03-31 2020-06-30
 Russia hCoV-19/Russia/CRIE161454/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T C14408T A23403G GGG28881AAC CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_479622
 2020-03-31 2020-06-30
 Russia hCoV-19/Russia/CRIE164776/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C2416T C3037T G8371T C14408T C18570T A23403G G25563T CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_479648
 2020-03-31 2020-07-01
 Canada hCoV-19/Canada/NB-235/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C289T C1059T C3037T C14408T A23403G G25563T ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_479649
 2020-03-31 2020-07-01
 Canada hCoV-19/Canada/NB-235/2020/P1
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C289T C1059T C3037T C14408T A23403G G25563T ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_479650
 2020-03-31 2020-07-01
 Canada hCoV-19/Canada/NB-237/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC A29406G ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_480009
 2020-03-31 2020-07-01
 Japan hCoV-19/Japan/PG-0336/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACT1- C241T C313T C3037T C14408T A23403G GGG28881AAC TAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29817-

EPI_ISL_480026
 2020-03-31 2020-07-01
 Japan hCoV-19/Japan/PG-0354/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C313T C3037T C14408T C21034T A23403G GGG28881AAC G29734T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_480027
 2020-03-31 2020-07-01
 Japan hCoV-19/Japan/PG-0355/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C313T C3037T C14408T G20238T A23403G GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_480028
 2020-03-31 2020-07-01
 Japan hCoV-19/Japan/PG-0356/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T C14697T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480067
 2020-03-31 2020-07-01
 Japan hCoV-19/Japan/PG-0398/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G G26730A GGG28881AAC G28980T TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_480081
 2020-03-31 2020-07-01
 Japan hCoV-19/Japan/PG-0412/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G GGG28881AAC TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_480125
 2020-03-31 2020-07-01
 Japan hCoV-19/Japan/PG-0464/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G GGG28881AAC AATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29818-

EPI_ISL_480128
 2020-03-31 2020-07-01
 Japan hCoV-19/Japan/PG-0468/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C313T C3037T C14408T A23403G GGG28881AAC GAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29864-

EPI_ISL_480129
 2020-03-31 2020-07-01
 Japan hCoV-19/Japan/PG-0469/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACT1- C241T C313T C3037T G11083T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480199
 2020-03-31 2020-07-01
 Japan hCoV-19/Japan/PG-0543/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C241T C3037T C14408T A20268G A23403G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_480200
 2020-03-31 2020-07-01
 Japan hCoV-19/Japan/PG-0544/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C3037T C14408T A20268G A23403G TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_480201
 2020-03-31 2020-07-01
 Japan hCoV-19/Japan/PG-0545/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C313T C3037T C8016T C14408T T16374C A23403G GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_480391 MT772558
 2020-03-31 2020-07-01
 United States SARS-CoV-2/human/USA/WI-UW-409/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C12729T A18812G C22295T T25865C G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480392 MT772559
 2020-03-31 2020-07-01
 United States SARS-CoV-2/human/USA/WI-UW-410/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T A29725G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480783
 2020-03-31 2020-07-02
 Senegal hCoV-19/Senegal/1683/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T C12559T C14408T C15324T A23403G TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_480787
 2020-03-31 2020-07-02
 Senegal hCoV-19/Senegal/1749/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_481265 MT704119
 2020-03-31 2020-07-02
 United States SARS-CoV-2/human/USA/MD-MDH-0016/2020
 ATT1- C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_481744
 2020-03-31 2020-07-03
 Canada hCoV-19/Canada/NB_246/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C2559Y C8782T T10771C C17747T A17858G C18060T T28144C ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_481745
 2020-03-31 2020-07-03
 Canada hCoV-19/Canada/NB_247/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A T13216G C14408T A23403G C23731T GGG28881AAC ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_482298
 2020-03-31 2020-07-03
 United States hCoV-19/USA/OR-PROV-011/2020
 C241T C1059T C3037T C14408T A23403G G25563T G29553A

EPI_ISL_482299
 2020-03-31 2020-07-03
 United States hCoV-19/USA/OR-PROV-012/2020
 C8782T C16173T C17747T A17858G C18060T T28144C

EPI_ISL_482300
 2020-03-31 2020-07-03
 United States hCoV-19/USA/OR-PROV-013/2020
 C241T C1059T C3037T G8828A C14408T A23403G G25302T G25563T C29750T

EPI_ISL_483086
 2020-03-31 2020-07-07
 Australia hCoV-19/Australia/SAP279/2020
 ATTA1- C241T C1059T C3037T C10851T C14408T A23403G G25563T

EPI_ISL_483091
 2020-03-31 2020-07-07
 Australia hCoV-19/Australia/SAP306/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T

EPI_ISL_483167
 2020-03-31 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0477-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C14408T C16762T A23403G G25563T

EPI_ISL_483171
 2020-03-31 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0483-SAN/2020
 C241T C1059T C3037T G4504A C14408T A23403G G25563T

EPI_ISL_483172
 2020-03-31 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0484-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C988T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_483179
 2020-03-31 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0494-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T G431A C1059T G2600A C3037T C7119T C14408T A23403G G25563T T27634C

EPI_ISL_483189
 2020-03-31 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0506-SAN/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C6629T C14408T C23277T A23403G G25563T

EPI_ISL_483190
 2020-03-31 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0508-SAN/2020
 C241T C1059T C3037T C14408T C18115T C18377T A23403G A25182C G25563T

EPI_ISL_483317
 2020-03-31 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0709-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C13487T C14408T C16762T A23403G G25563T C26885T A29112T

EPI_ISL_483368
 2020-03-31 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0801-SAN/2020
 ATTA1- C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_483370
 2020-03-31 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0803-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C988T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_483376
 2020-03-31 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0813-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C241T C3037T C4540T G4904T G5206T C14408T A23403G C24138T C25350T

EPI_ISL_483386
 2020-03-31 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0830-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T G431A C1059T G2600A C3037T C7119T C14408T A23403G G25563T T27634C

EPI_ISL_483388
 2020-03-31 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0832-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C16762T A23403G G25563T

EPI_ISL_483392
 2020-03-31 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0837-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T C16762T A23403G G25563T

EPI_ISL_483434
 2020-03-31 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0975-SAN/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C13487T C14408T C16762T A23403G G25563T C26885T A29112T

EPI_ISL_483439
 2020-03-31 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0980-SAN/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C1059T C3037T G4504A C14408T A23403G G25563T

EPI_ISL_483441
 2020-03-31 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0982-SAN/2020
 ATTA1- C241T C1059T C3037T A3938C T8996G C14408T G17014T A23403G G25563T G26769T

EPI_ISL_483447
 2020-03-31 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0991-SAN/2020
 ATTA1- C241T C1059T C3037T C6629T C14408T C23277T A23403G G25563T

EPI_ISL_484169
 2020-03-31 2020-07-08
 United Kingdom hCoV-19/England/GSTT-265E1F5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G14580T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484170
 2020-03-31 2020-07-08
 United Kingdom hCoV-19/England/GSTT-265E201/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G11083T C14805T G18255T G25297A G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484415
 2020-03-31 2020-07-08
 United Kingdom hCoV-19/England/PORT-2D1613/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1461G A3003T C3037T C5730T C14408T G19542T A23403G G24328A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484416
 2020-03-31 2020-07-08
 United Kingdom hCoV-19/England/PORT-2D1631/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1461G C3037T C5730T C14408T G19542T A23403G G24328A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484417
 2020-03-31 2020-07-08
 United Kingdom hCoV-19/England/PORT-2D1640/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1457T A2480G C2558T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484710
 2020-03-31 2020-07-08
 United States hCoV-19/USA/MI-UM-2006S000851/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G386A T490A G922A C999T C3177T C8782T T18736C C24034T T26729C TC27672AA G28077C T28144C A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484713
 2020-03-31 2020-07-08
 United States hCoV-19/USA/MI-UM-2006S000856/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1911T C3037T C14408T T17598C A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484718
 2020-03-31 2020-07-08
 United States hCoV-19/USA/MI-UM-2006S000863/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T6496C C14408T A23403G G25563T T26159C A27338G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484723
 2020-03-31 2020-07-08
 United States hCoV-19/USA/MI-UM-2006S000870/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C5986T C14408T C16470T A23403G G25563T C26645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484762
 2020-03-31 2020-07-08
 United States hCoV-19/USA/MI-UM-2006S000934/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T6905G C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484794
 2020-03-31 2020-07-08
 United States hCoV-19/USA/MI-UM-2006S001036/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C6638T C14408T A23403G C23613T G25563T G28378T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485987
 2020-03-31 2020-07-10
 United States hCoV-19/USA/WA-UW-2369/2020
 ATTAAAGGTTTAT1- AAC34TTT C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_486820
 2020-03-31 2020-07-10
 Russia hCoV-19/Russia/CRIE161143/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T C14408T T22297C A23403G GGG28881AAC CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_486821
 2020-03-31 2020-07-10
 Russia hCoV-19/Russia/CRIE162398/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T C3373A C6883T C14408T G21724A A23403G GGG28881AAC CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_486822
 2020-03-31 2020-07-10
 Russia hCoV-19/Russia/CRIE164298/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T A1331G C3037T T8458C C14408T A23403G G25793A GGG28881AAC CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_486823
 2020-03-31 2020-07-10
 Russia hCoV-19/Russia/CRIE164399/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T C14408T A18085G A23403G GG28881AA CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_486824
 2020-03-31 2020-07-10
 Russia hCoV-19/Russia/CRIE164980/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T C3373A C6696T C14408T A23403G GGG28881AAC CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_486825
 2020-03-31 2020-07-10
 Russia hCoV-19/Russia/CRIE168693/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C313T C3037T C14408T A23403G GGG28881AAC CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_486826
 2020-03-31 2020-07-10
 Russia hCoV-19/Russia/CRIE170180/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T C14408T A23403G GGG28881AAC CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_487684
 2020-03-31 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2823/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487710
 2020-03-31 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5663/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C3411Y C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487812
 2020-03-31 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5577/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487817
 2020-03-31 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5572/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1076T C3037T C10582T C14408T A23403G G25563T C28310T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487991
 2020-03-31 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2848/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T21861C A23403G C28253Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488465
 2020-03-31 2020-07-14
 United Kingdom hCoV-19/England/NORT-2955F0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T C17410T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488477
 2020-03-31 2020-07-14
 United Kingdom hCoV-19/England/NORT-295824/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G C9223T G11083T C14805T C16247Y T17247C T25202K G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488488
 2020-03-31 2020-07-14
 United Kingdom hCoV-19/England/NORT-2954C6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11530T A13190R C14408T A23403G C25350T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488496
 2020-03-31 2020-07-14
 United Kingdom hCoV-19/England/NORT-295806/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G C9223T G11083T C14805T C17125Y T17247C T25202K G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488523
 2020-03-31 2020-07-14
 United Kingdom hCoV-19/England/NORT-29550F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083K C14805T T25202K G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488529
 2020-03-31 2020-07-14
 United Kingdom hCoV-19/England/NORT-2837FF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G G24197T T25202K G25563T C26735T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488531
 2020-03-31 2020-07-14
 United Kingdom hCoV-19/England/NORT-2958AC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1350W A2480R C2558Y C3702Y C11074Y G11083T C14805T G24821K G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488537
 2020-03-31 2020-07-14
 United Kingdom hCoV-19/England/NORT-295639/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G27750T C29835T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488539
 2020-03-31 2020-07-14
 United Kingdom hCoV-19/England/NORT-283759/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1350T A2480G C2558T G11083T C14805T T25202K G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488540
 2020-03-31 2020-07-14
 United Kingdom hCoV-19/England/NORT-29560C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T C17410T T25202K G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488545
 2020-03-31 2020-07-14
 United Kingdom hCoV-19/England/NORT-2952AE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C14408T A18518R A21717T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488558
 2020-03-31 2020-07-14
 United Kingdom hCoV-19/England/NORT-2955A5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T C17410Y T25202K G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488559
 2020-03-31 2020-07-14
 United Kingdom hCoV-19/England/NORT-2835B9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1912T C3037T C14408T A20465R A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488566
 2020-03-31 2020-07-14
 United Kingdom hCoV-19/England/NORT-2955C3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11530Y C14408T A23403G C25350Y G27750K C29835Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488569
 2020-03-31 2020-07-14
 United Kingdom hCoV-19/England/NORT-2830B8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6990T C14408T A23403G T25202K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488604
 2020-03-31 2020-07-14
 United Kingdom hCoV-19/England/NORT-29552D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037Y G11083T C14408Y C14805Y A20268G G22225K A23403G T25202K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488607
 2020-03-31 2020-07-14
 United Kingdom hCoV-19/England/NORT-295499/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488625
 2020-03-31 2020-07-14
 United Kingdom hCoV-19/England/NORT-295842/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1912T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488645
 2020-03-31 2020-07-14
 United Kingdom hCoV-19/England/NORT-2832D0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C2028T A14457G T25202K G25500T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488649
 2020-03-31 2020-07-14
 United Kingdom hCoV-19/England/NORT-2954B7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11530T A13190R C14408T A23403G T25202K C25350T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488660
 2020-03-31 2020-07-14
 United Kingdom hCoV-19/England/NORT-283197/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1912T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488665
 2020-03-31 2020-07-14
 United Kingdom hCoV-19/England/NORT-295332/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1912T C3037T C14408T A23403G G27014K GGG28881AAC G29227A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488668
 2020-03-31 2020-07-14
 United Kingdom hCoV-19/England/NORT-295754/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G T25202K G27996T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488672
 2020-03-31 2020-07-14
 United Kingdom hCoV-19/England/NORT-29548A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488696
 2020-03-31 2020-07-14
 United Kingdom hCoV-19/England/NORT-29555A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G3308R G11083K C14805T T25202K G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488702
 2020-03-31 2020-07-14
 United Kingdom hCoV-19/England/NORT-295156/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A T13216G C14408T A19960G A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488703
 2020-03-31 2020-07-14
 United Kingdom hCoV-19/England/NORT-2957DC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T A23403G C23731T T25202K G28198T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488709
 2020-03-31 2020-07-14
 United Kingdom hCoV-19/England/NORT-29561B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T C17410T T25202K G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488712
 2020-03-31 2020-07-14
 United Kingdom hCoV-19/England/NORT-2953AB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1912T C3037T C14408T A23403G T25202K GGG28881AAC G29227A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488741
 2020-03-31 2020-07-14
 United Kingdom hCoV-19/England/NORT-28314C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G C9223T G11083T C13876Y C14805T T16154C T17247C C18747T G20125A G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488902
 2020-03-31 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2874/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T83C C241T C3037T C10798A C13862T C14408T G21986A A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488909
 2020-03-31 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2846/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T21861C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488918
 2020-03-31 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2819/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16289T G19009T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488940
 2020-03-31 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2877/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488961
 2020-03-31 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2843/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488965
 2020-03-31 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2853/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T T4195C G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488970
 2020-03-31 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2828/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5907T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488995
 2020-03-31 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2863/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3543T C14408T C16289T A23403G G23426T G25429T C27800T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489016
 2020-03-31 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2834/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1076T C3037T C10582T C14408T A20262R G20756K A23403G G25563T C28310T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489025
 2020-03-31 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2839/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489028
 2020-03-31 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2844/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489041
 2020-03-31 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2854/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6578T C14408T C18348T A23403G AAATTG26096- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_490058
 2020-03-31 2020-07-15
 Singapore hCoV-19/Singapore/608/2020
 C6310A C6312A C10301M G11083T C13730T G16405K C19524T C23929T T27588A C28311T AAAAAAAAAAAA29892-

EPI_ISL_491462
 2020-03-31 2020-07-17
 Peru hCoV-19/Peru/INS-040/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAA1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC G29179T ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_491464
 2020-03-31 2020-07-17
 Peru hCoV-19/Peru/INS-039/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAA1- C8782T T12364A A19719T C26088T T27308Y T28144C ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_491574
 2020-03-31 2020-07-17
 United Kingdom hCoV-19/Scotland/EDB6724/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C3787T C16362T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491920 MT776414
 2020-03-31 2020-07-17
 United States SARS-CoV-2/human/USA/VA_NIDDL_2812/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A10874G C14408T T19839C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492285
 2020-03-31 2020-07-20
 United Kingdom hCoV-19/England/BRIS-18530B8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6380T C6573T C8655T C13971T C14408T G14999A A23403G C25521A C25528T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492341
 2020-03-31 2020-07-20
 United Kingdom hCoV-19/England/BRIS-18530C7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6573T C8655T C14408T G18972T A23403G C25521A C25528T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493062
 2020-03-31 2020-07-20
 United States hCoV-19/USA/WY-WYPHL-20006987/2020
 ATTAAAGGTTTATAC1- C241T C1059T C3037T C14408T A23403G G25563T C29370Y G29553A

EPI_ISL_494209
 2020-03-31 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-1681B7/2020
 ATTAAAGGTTTA1- C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC G29041K

EPI_ISL_494231
 2020-03-31 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-168366/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- A2480G C2558T G11083T C14805T C14931T G16285T C17876T G26144T C29659Y AAAAAAAAAAAAAAA29889-

EPI_ISL_494572
 2020-03-31 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1381/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C379A C1059T C3037T C3885T G4657A C14408T A19453C G21578T A23403G G25563T

EPI_ISL_498159
 2020-03-31 2020-07-27
 Colombia hCoV-19/Colombia/89002/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498160
 2020-03-31 2020-07-27
 Colombia hCoV-19/Colombia/89781/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498166
 2020-03-31 2020-07-27
 Colombia hCoV-19/Colombia/95839/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G G25563T G27261T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_499433
 2020-03-31 2020-07-28
 United Kingdom hCoV-19/Wales/PHWC-169356/2020
 ATT1- C241T G701T C3037T C14408T A23403G

EPI_ISL_500456
 2020-03-31 2020-07-28
 Spain hCoV-19/Spain/COV006026/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T T13006C C14408T G16065R G17302T A23403G G25563T C25688T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_501206
 2020-03-31 2020-07-31
 Malaysia hCoV-19/Malaysia/3605/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- T3017C A6502G G11083T C14805T G26144T G28842T

EPI_ISL_501207
 2020-03-31 2020-07-31
 Malaysia hCoV-19/Malaysia/3611/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G11083T C14408T A23403G C26461T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_501208
 2020-03-31 2020-07-31
 Malaysia hCoV-19/Malaysia/3703/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C2880T C6312A T7621C G11083T C13730T C21627T C23929T C25549T C28311T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_501209
 2020-03-31 2020-07-31
 Malaysia hCoV-19/Malaysia/3706/2020
 ATTAAAGGTTTATACCT1- C6312A T7621C G11083T C13730T C21627T C23929T C25549T C28311T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_507079
 2020-03-31 2020-08-03
 United Kingdom hCoV-19/England/LOND-124D2C0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G1440A G2891A GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_507080
 2020-03-31 2020-08-03
 United Kingdom hCoV-19/England/LOND-124D2DF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A20268G A23403G AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_507884
 2020-03-31 2020-08-03
 United States hCoV-19/USA/MI-MDHHS-SC21108/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T C3037T G4720A C14408T A23403G G25563T C28076T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507921
 2020-03-31 2020-08-03
 United States hCoV-19/USA/MI-MDHHS-SC21145/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTC1- C241T C1059T C3037T T12619C C14408T A23403G G25563T TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_507922
 2020-03-31 2020-08-03
 United States hCoV-19/USA/MI-MDHHS-SC21146/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T G11083T C14408T C17474T C18877T A23403G G25563T ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_508368
 2020-03-31 2020-08-04
 India hCoV-19/India/IK4/2020
 C241T C3037T C14408T A23403G G29868A

EPI_ISL_508376
 2020-03-31 2020-08-04
 India hCoV-19/India/IK5/2020
 C241T C3037T C12781T C14408T A23403G G29868A

EPI_ISL_508745 MT834652
 2020-03-31 2020-08-04
 United States SARS-CoV-2/human/USA/FL-BPHL-0542/2020
 ATTAA1- C241T C751T C1059T C3037T C14408T A23403G G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_508746 MT834653
 2020-03-31 2020-08-04
 United States SARS-CoV-2/human/USA/FL-BPHL-0543/2020
 AT1- C241T C1059T C3037T C10188T C14408T A23403G T24982C G25563T C27964T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_508749 MT834656
 2020-03-31 2020-08-04
 United States SARS-CoV-2/human/USA/FL-BPHL-0546/2020
 ATTA1- C241T C751T C1059T C1191T C3037T A6035G C10319T C14408T G17014T A23403G G25563T C27964T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_508959
 2020-03-31 2020-08-04
 France hCoV-19/France/ARA17330/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTG1- C241T C1059T C3037T C14408T A23403G G25563T C29585T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_508960
 2020-03-31 2020-08-04
 France hCoV-19/France/ARA17747/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCT1- C241T C3037T C14408T A23403G G28812A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_509011
 2020-03-31 2020-08-04
 France hCoV-19/France/ARA17037/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C3037T C14408T C23277T A23403G T23857C G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_509013
 2020-03-31 2020-08-04
 France hCoV-19/France/ARA17410/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14408T C15324T A15860G A23403G AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_509014
 2020-03-31 2020-08-04
 France hCoV-19/France/ARA17573/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C3037T C14408T C15324T A23403G C28253T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_509769 MT846473
 2020-03-31 2020-08-05
 United States SARS-CoV-2/human/USA/FL-BPHL-0711/2020
 A1- C241T C1059T C1917T C3037T C14408T A23403G G25563T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_509772 MT846476
 2020-03-31 2020-08-05
 United States SARS-CoV-2/human/USA/FL-BPHL-0714/2020
 AT1- T490A C3177T C8782T C14396T T18736C C21811T C24034T T26729C C27635T G28077C T28144C A29700G C29739T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_509773 MT846477
 2020-03-31 2020-08-05
 United States SARS-CoV-2/human/USA/FL-BPHL-0715/2020
 AT1- C241T C1059T C1917T C3037T T8278C C14408T C16997T A23403G G25563T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_509774 MT846478
 2020-03-31 2020-08-05
 United States SARS-CoV-2/human/USA/FL-BPHL-0716/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C601T C3037T C8389T C14408T A23403G G25563T G27915A G27996T AAAA29900-

EPI_ISL_510912
 2020-03-31 2020-08-07
 Portugal hCoV-19/Portugal/PT0651/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C1594T C3037T C3140T C14408T A23403G G24077T C28462A C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_510927
 2020-03-31 2020-08-07
 Portugal hCoV-19/Portugal/PT0668/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3653T C14408T C21242T GCTTTA22289- A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511192
 2020-03-31 2020-08-07
 Portugal hCoV-19/Portugal/PT1231/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T G4474T A14406G C14408T C21575T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511193
 2020-03-31 2020-08-07
 Portugal hCoV-19/Portugal/PT1232/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T G4474T A14406G C14408T C21575T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511194
 2020-03-31 2020-08-07
 Portugal hCoV-19/Portugal/PT1233/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511195
 2020-03-31 2020-08-07
 Portugal hCoV-19/Portugal/PT1234/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T A10124G C14408T G14584A A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511196
 2020-03-31 2020-08-07
 Portugal hCoV-19/Portugal/PT1235/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511197
 2020-03-31 2020-08-07
 Portugal hCoV-19/Portugal/PT1236/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C664T C2399T C3037T A6391G C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511198
 2020-03-31 2020-08-07
 Portugal hCoV-19/Portugal/PT1237/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T T1243C C3037T A9235G G10265A C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511199
 2020-03-31 2020-08-07
 Portugal hCoV-19/Portugal/PT1238/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G1439A C3037T A4447G C14408T C16733T C21621T A23403G A26530G G29449T T29574C G29737T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511200
 2020-03-31 2020-08-07
 Portugal hCoV-19/Portugal/PT1239/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T C21575T A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511201
 2020-03-31 2020-08-07
 Portugal hCoV-19/Portugal/PT1240/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G1439A C3037T A4447G C14408T C16733T C21621T A23403G A26530G G29449T T29574C G29737T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511202
 2020-03-31 2020-08-07
 Portugal hCoV-19/Portugal/PT1241/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G1439A C3037T A4447G C14408T C16733T C21621T A23403G A26530G G29449T T29574C G29737T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511203
 2020-03-31 2020-08-07
 Portugal hCoV-19/Portugal/PT1242/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G1439A C3037T A4447G C14408T C16733T C21621T A23403G A26530G G29449T T29574C G29737T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511204
 2020-03-31 2020-08-07
 Portugal hCoV-19/Portugal/PT1243/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G1439A C3037T A4447G T4579A C14408T C16733T C21621T A23403G A26530G G28827T G29449T T29574C G29737T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511205
 2020-03-31 2020-08-07
 Portugal hCoV-19/Portugal/PT1244/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T G1439A C3037T C4367A A4447G C14408T C16733T C21621T A23403G A26530G G29449T T29574C G29737T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511206
 2020-03-31 2020-08-07
 Portugal hCoV-19/Portugal/PT1245/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G1439A C3037T A4447G C14408T C16733T C21621T A23403G A26530G G29449T T29574C G29737T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511207
 2020-03-31 2020-08-07
 Portugal hCoV-19/Portugal/PT1246/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C1059T C3037T G11083T T14394C C14408T G16852T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511208
 2020-03-31 2020-08-07
 Portugal hCoV-19/Portugal/PT1247/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511209
 2020-03-31 2020-08-07
 Portugal hCoV-19/Portugal/PT1248/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C1059T C3037T G11083T T14394C C14408T G16852T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511362
 2020-03-31 2020-08-07
 Portugal hCoV-19/Portugal/PT1403/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T G20434T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511398
 2020-03-31 2020-08-07
 Portugal hCoV-19/Portugal/PT1439/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C9891T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511431
 2020-03-31 2020-08-07
 Portugal hCoV-19/Portugal/PT1472/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T T658C C3037T C12043T C14408T A23403G C25207T GGG28881AAC C29296T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511432
 2020-03-31 2020-08-07
 Portugal hCoV-19/Portugal/PT1473/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T T658C C3037T C12043T C14408T A23403G C25207T GGG28881AAC C29296T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511435
 2020-03-31 2020-08-07
 Portugal hCoV-19/Portugal/PT1476/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3140T C13059T C14408T A23403G G24077T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511451
 2020-03-31 2020-08-07
 Portugal hCoV-19/Portugal/PT1492/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511529
 2020-03-31 2020-08-08
 Portugal hCoV-19/Portugal/PT0980/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T A9467G C14408T C15324T C18747T C21691T A23403G C29218T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511656
 2020-03-31 2020-08-08
 Portugal hCoV-19/Portugal/PT1109/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC T29726C TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511663
 2020-03-31 2020-08-08
 Portugal hCoV-19/Portugal/PT1116/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T G3231T A12868G C14408T C15738T C16111T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511668
 2020-03-31 2020-08-08
 Portugal hCoV-19/Portugal/PT1121/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T G4474T A14406G C14408T C21575T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511669
 2020-03-31 2020-08-08
 Portugal hCoV-19/Portugal/PT1122/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T C313T C3037T C14408T G22627A A23403G G25489T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511675
 2020-03-31 2020-08-08
 Portugal hCoV-19/Portugal/PT1128/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C190T C241T C3037T C14408T A23403G GGG28881AAC A29770T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511687
 2020-03-31 2020-08-08
 Portugal hCoV-19/Portugal/PT1140/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C6539T C14408T A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511688
 2020-03-31 2020-08-08
 Portugal hCoV-19/Portugal/PT1141/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTA1- C241T C3037T C6539T C14408T A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511900
 2020-03-31 2020-08-10
 India hCoV-19/India/IK3/2020
 G1820A C6310A C6312A G11083T C13730T C19524T C21658T C23929T C28311T G29868A

EPI_ISL_512812 MT872502
 2020-03-31 2020-08-11
 Sierra Leone SARS-CoV-2/human/SLE/KGH-G-8549/2020
 ATTA1- C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_513632
 2020-03-31 2020-08-13
 United States hCoV-19/USA/WA-UW-4607/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGT1- C241T C1059T C3037T C14408T G20014T A23403G G25563T C27804T G29553A GCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29742-

EPI_ISL_514264
 2020-03-31 2020-08-16
 Peru hCoV-19/Peru/INS-043/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAA1- C241T C3037T C4002T G10097A C12854T C13536T C14408T A21131G A23403G C23731T GGG28881AAC ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_514653 MT893000
 2020-03-31 2020-08-17
 United States SARS-CoV-2/human/USA/MN-MDH-1434/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T C3037T C14408T G14580A T19527C A19821G G22346T A23403G G25563T C27964T C28099T C29722T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_514654 MT893001
 2020-03-31 2020-08-17
 United States SARS-CoV-2/human/USA/MN-MDH-1435/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C9561T C9611T G9805T C14408T A23403G A28858G AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_514655 MT893002
 2020-03-31 2020-08-17
 United States SARS-CoV-2/human/USA/MN-MDH-1436/2020
 ATTAAAGGTTT1- T490A C3177T C8782T G14186T T18736C G18781A G19684T C24034T T26729C C27635T G28077C T28144C A29700G AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_514656 MT893003
 2020-03-31 2020-08-17
 United States SARS-CoV-2/human/USA/MN-MDH-1437/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C3037T C12501T C14408T A23403G G27715T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_514657 MT893004
 2020-03-31 2020-08-17
 United States SARS-CoV-2/human/USA/MN-MDH-1438/2020
 ATT1- C8782T C17747T A17858G C18060T A24694T T28144C G28812T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_515272
 2020-03-31 2020-08-18
 United States hCoV-19/USA/WA-UW-4569/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGT1- C241T C1059T C3037T C6040T C14408T C19560T T21995G A23403G G25563T GCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29742-

EPI_ISL_515273
 2020-03-31 2020-08-18
 United States hCoV-19/USA/WA-UW-4581/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGT1- C241T C1059T C2156T C3037T G12352C C14408T A23403G G25563T G29553A GCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29742-

EPI_ISL_515274
 2020-03-31 2020-08-18
 United States hCoV-19/USA/WA-UW-4585/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGT1- C8782T G16141A C17747T A17858G C18060T C23758T T28144C GCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29742-

EPI_ISL_515276
 2020-03-31 2020-08-18
 United States hCoV-19/USA/WA-UW-4592/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGT1- C241T C1059T C3037T C14408T C16859T A23403G G25563T GCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29742-

EPI_ISL_515278
 2020-03-31 2020-08-18
 United States hCoV-19/USA/WA-UW-4603/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGT1- C241T C1059T C3037T C14408T A23403G G25563T GCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29742-

EPI_ISL_515522
 2020-03-31 2020-08-19
 Brazil hCoV-19/Brazil/SP-122/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G T27299C GGG28881AAC T29148C CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857TC

EPI_ISL_516367
 2020-03-31 2020-08-20
 United States hCoV-19/USA/MI-MDHHS-SC21640/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C823T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516372
 2020-03-31 2020-08-20
 United States hCoV-19/USA/MI-MDHHS-SC21645/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T C3037T A5011M C14408T A23403G G25563T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_520726
 2020-03-31 2020-08-25
 United Arab Emirates hCoV-19/United Arab Emirates/L920633851/2020
 C241T T727C C3037T C3373A C11195T C11665T G13812T C14408T C18252T A23403G G28580T GGG28881AAC

EPI_ISL_520727
 2020-03-31 2020-08-25
 United Arab Emirates hCoV-19/United Arab Emirates/L920634181/2020
 C241T G943A G1563A C3037T G6576A G7393T C14408T C19602T T20277C A23403G GGG28881AAC

EPI_ISL_520728
 2020-03-31 2020-08-25
 United Arab Emirates hCoV-19/United Arab Emirates/L920634731/2020
 C241T C913T C3037T G10523C C14408T C15324T A23403G G28690T

EPI_ISL_522549
 2020-03-31 2020-08-26
 France hCoV-19/Reunion/RUN-PIMIT20/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_523476
 2020-03-31 2020-08-26
 Netherlands hCoV-19/Netherlands/un-EMC-721/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4586T G12550A C14408T A20268G C20740A A23403G G29734C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523956
 2020-03-31 2020-08-27
 Brazil hCoV-19/Brazil/SP-132/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T C14408T TA14501AC A23403G T27299C GGG28881AAC T29148C AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852T

EPI_ISL_523969
 2020-03-31 2020-08-27
 Brazil hCoV-19/Brazil/SP-170/2020
 TTAAAGGTTTATACCTTCCCAGGT2- C241T C3037T A6319G C14408T A23403G G25088T T26149C GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_525643
 2020-03-31 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-34682-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T T1303C C3037T G10265A C14408T A23403G GGG28881AAC TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_525645
 2020-03-31 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-34804-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C11224T C14408T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_525646
 2020-03-31 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-34848-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C1917T C3037T C14408T G20005A T21458C A23403G G25563T TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_525647
 2020-03-31 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-34855-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C9665T G13385A C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_527878
 2020-03-31 2020-09-05
 Nigeria hCoV-19/Nigeria/ED07-CV160/2020
 ATTAAA1- A2480G C2558T T6322A G11083T C14805T G15982T G26144T G26779T A29222G AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_530052
 2020-03-31 2020-09-10
 Spain hCoV-19/Spain/MD-LP49/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16946T G18756A A20268G A22606T A23403G TATCTA27320- G29734C ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_530222 MT997744
 2020-03-31 2020-09-10
 United States SARS-CoV-2/human/USA/MN-MDH-1626/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T G1463A C3037T G7557A C8818T C14408T A23403G G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_530223 MT997745
 2020-03-31 2020-09-10
 United States SARS-CoV-2/human/USA/MN-MDH-1627/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C21707T A23403G A26530G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_530226
 2020-03-31 2020-09-11
 Australia hCoV-19/Australia/QLD963/2020/P1
 ATT1- C241T C3037T C5223T C14408T T18417C G19083T A20268G C21597T A23403G C28887T C29870A

EPI_ISL_534347
 2020-03-31 2020-09-14
 Russia hCoV-19/Russia/CRIE161122/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T C14408T C17410T A23403G GGG28881AAC C29304T CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_534348
 2020-03-31 2020-09-14
 Russia hCoV-19/Russia/CRIE166064/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T C14408T A23403G GGG28881AAC CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_534349
 2020-03-31 2020-09-14
 Russia hCoV-19/Russia/CRIE166582/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T G341A C3037T C3373A C6883T C13487T G14277T C14408T G21724A A23403G GGG28881AAC CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_534817
 2020-03-31 2020-09-14
 United Kingdom hCoV-19/England/OXON-B2E12/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C162Y C241T C3037T C14408T A20796G T21722K A21744W T21755K A23403G G24038T GGG28881AAC AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_534821
 2020-03-31 2020-09-14
 United Kingdom hCoV-19/England/OXON-B2E8B/2020
 C241T C3037T C14408T G22592T A23403G G28371T GGG28881AAC A29893W A29903-

EPI_ISL_534868
 2020-03-31 2020-09-14
 United Kingdom hCoV-19/England/OXON-B35A3/2020
 C241T C3037T C14408T T18398C A23403G G24781T G28580A GGG28881AAC

EPI_ISL_534899
 2020-03-31 2020-09-14
 United Kingdom hCoV-19/England/OXON-B3A68/2020
 A1515G C1943T C9223T T9835C G11083T C14805T T17247C G26144T

EPI_ISL_534948
 2020-03-31 2020-09-14
 United Kingdom hCoV-19/England/OXON-B435D/2020
 ATTAAAGGTT1- C241T C3037T C14408T C16393T A23403G C26256T C27046T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_534954
 2020-03-31 2020-09-14
 United Kingdom hCoV-19/England/OXON-B442D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTG1- C241T C3037T C14408T A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_534971
 2020-03-31 2020-09-14
 United Kingdom hCoV-19/England/OXON-B4760/2020
 C241T C3037T C14408T A20796G A23403G G24038T GGG28881AAC

EPI_ISL_534980
 2020-03-31 2020-09-14
 United Kingdom hCoV-19/England/OXON-B48A9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTA1- C241T G331K C3037T C4002T G10097A C13536T C14408T A23403G C23731T C25883M C27970T GGG28881AAC G29513T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_535006
 2020-03-31 2020-09-14
 United Kingdom hCoV-19/England/OXON-B4CE9/2020
 AT1- C241T C3037T C6968T C14408T A23403G GGG28881AAC AA29902-

EPI_ISL_536369
 2020-03-31 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00243673/2020
 ATTAAAGGTTTATACCT1- C241T G662T C3037T C5672Y C14408T C15324T C16726Y A23403G C25433T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_536370
 2020-03-31 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00243675/2020
 ATTAAAGGTTTA1- C241T C3037T A7966R G10265A G11401T C14408T A23403G GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_536372
 2020-03-31 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00243708/2020
 ATTAAAGGTT1- C241T C3037T A7468T C14408T A20268G A23403G C26313T C26907T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_536373
 2020-03-31 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00243710/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C3037T C11916T C14408T C18998T G21786A A23403G G25563T G29540A AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_536377
 2020-03-31 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00243755/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C1912T C3037T C14408T A23403G G25563T A25806W GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_536378
 2020-03-31 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00243761/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C313T C3037T C14408T C17491T A23403G C25904T GGG28881AAC A29700R CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_536379
 2020-03-31 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00243797/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C346T C3037T C14408T C15324T A23403G C25433T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_536381
 2020-03-31 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00243864/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T C8208T G9267A T9667C C14408T A23403G G25947T G28361A GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_536383
 2020-03-31 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00243875/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C815T C3037T C14408T A23403G G25437T GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_536385
 2020-03-31 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00243976/2020
 ATTAAAGGT1- C241T C1059T C3037T C14408T A23403G G25563T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_536387
 2020-03-31 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00244008/2020
 ATTAAAGGTTTA1- T490A G526K C3177T C6926Y C8782T A11600G C18395Y T18736C C24034T T26729C C27635T G28077C T28144C A29567C A29700G TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_536388
 2020-03-31 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00244068/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T C14408T C15324T A23403G C25433T G28086R T28088W CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_536389
 2020-03-31 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00244094/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C1059T C3037T C14408T A23403G G25563T A26126W TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_536390
 2020-03-31 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00244160/2020
 ATTAAAGGT1- C241T C3037T C5512T T9667C C14408T C20930T A23403G G25947T G28361A GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_536391
 2020-03-31 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00244197/2020
 ATTAAA1- C241T C3037T C14408T C15324T A23403G C25433T T27444C C27847T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_536392
 2020-03-31 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00244326/2020
 ATTAAAGGTT1- C241T C1059T C3037T C14408T A23403G G25563T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_536393
 2020-03-31 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00244338/2020
 AT1- C241T C3037T C14408T A23403G GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_536395
 2020-03-31 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00244354/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T AAGTCATTT686- C3037T C9050Y A13175R C14408T A20268G GTG22578ACA A23403G A24402G C26313T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_536397
 2020-03-31 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00244359/2020
 ATTAAAGGTTTATACCT1- C241T C3037T C4794T C4824T C6037T C14408T C15324T A23403G C25433T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_536529
 2020-03-31 2020-09-16
 Peru hCoV-19/Peru/ANC-INS-132/2020
 ATTAAAG1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC C29739T

EPI_ISL_537496
 2020-03-31 2020-09-16
 United States hCoV-19/USA/CA-UCLA-157/2020
 ATTAAAGGTTTATA1- C241T C3037T C14408T C19813T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_537497
 2020-03-31 2020-09-16
 United States hCoV-19/USA/CA-UCLA-158/2020
 ATTAAAGGTTT1- C241T C3037T C14408T C19813T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_537573
 2020-03-31 2020-09-16
 United States hCoV-19/USA/CA-UCLA-44/2020
 A1- C241T G373T AAGTCATTT686- C1059T C3037T C14408T C22450T A23403G G25563T G29645T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_538336
 2020-03-31 2020-09-16
 Canada hCoV-19/Canada/ON-OICR-SLB2806/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T G2625A C3037T C6548T C14408T A23403G G25563T TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_538338
 2020-03-31 2020-09-16
 Canada hCoV-19/Canada/ON-OICR-SLB2809/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C11916T C14408T C18998T A23403G A23544G G25563T C27679T G29540A TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_538339
 2020-03-31 2020-09-16
 Canada hCoV-19/Canada/ON-OICR-SLB2811/2020
 ATTAAAGGTTTATAC1- C241T C2416T C3037T C14408T A21447R A23403G G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_538465
 2020-03-31 2020-09-17
 Singapore hCoV-19/Singapore/933/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6312A C8139T G11083T C13730T C23929T C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538466
 2020-03-31 2020-09-17
 Singapore hCoV-19/Singapore/934/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6310A C6312A G10400A G11083T C13730T C19524T C23929T C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538816
 2020-03-31 2020-09-17
 United Kingdom hCoV-19/England/LEED-2AA394/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T C14408T C20941T G21724T A23403G G23587C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538820
 2020-03-31 2020-09-17
 United Kingdom hCoV-19/England/LEED-2AA5AD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A7479G G11083T C14805T T17247C C25572T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538844
 2020-03-31 2020-09-17
 United Kingdom hCoV-19/England/LEED-2AA2E2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C3510T T10453C C11195T C14408T A23403G GGG28881AAC C29509T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538847
 2020-03-31 2020-09-17
 United Kingdom hCoV-19/England/LEED-2AA473/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A A14355G C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538901
 2020-03-31 2020-09-17
 United Kingdom hCoV-19/England/LEED-2AA613/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539002
 2020-03-31 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A825D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C9430T C14408T G20578T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539004
 2020-03-31 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8378/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539023
 2020-03-31 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8949/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G13379A C14408T C18877T A23403G G24197T G25563T C26735T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539034
 2020-03-31 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8A0A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539051
 2020-03-31 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A88A6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9246T G13379A C14408T C18877T A23403G G24197T G25563T C26735T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539099
 2020-03-31 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8D10/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2443R C3037T C13730T C14408T A23403G C23937Y G25429T C25916T C28725Y C28826Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539118
 2020-03-31 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8B16/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C14599Y A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539119
 2020-03-31 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A88C4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4893Y C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539176
 2020-03-31 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8E4A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C2037T A2480G C2558T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539494
 2020-03-31 2020-09-18
 Czech Republic hCoV-19/Czech Republic/NRL-5635/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C541T C1059T AA2361RR C2371Y C2488T CTA2571- C3037T G11083T C14408T T17865C A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541770
 2020-03-31 2020-09-23
 United Kingdom hCoV-19/England/LOND-1286DE8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T19839C A23403G G25552T GGG28881AAC C28887T G29742T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542581
 2020-03-31 2020-09-23
 United States hCoV-19/USA/TX-HMH-1197/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A6677G C11916T C14408T A14463G C18998T A20553G A23403G G25563T C25916T G29540A G29587A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542585
 2020-03-31 2020-09-23
 United States hCoV-19/USA/TX-HMH-1205/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T A2969G C3037T C14408T A23403G A25241G G25563T G26389T C27769T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542587
 2020-03-31 2020-09-23
 United States hCoV-19/USA/TX-HMH-1213/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C6040T C7764T C8782T C8950T G12478A T18736C T19713C C24034T C25096T T26729C G28077C T28144C C28896G C29451T A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542610
 2020-03-31 2020-09-23
 United States hCoV-19/USA/TX-HMH-1248/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10188T C11962T C14408T A23403G T24982C G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560569
 2020-03-31 2020-09-29
 France hCoV-19/France/CVL8262/2020
 A26- C28T C241T C3037T C14408T C21233T A23403G A23691G C24621T GGG28881AAC C29743A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_560582
 2020-03-31 2020-09-29
 France hCoV-19/France/GE8508/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G G23501T AG29687TA TAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29693-

EPI_ISL_560583
 2020-03-31 2020-09-29
 France hCoV-19/France/GE8509/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A7066G C10232T C14408T C15324T C21110T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560596
 2020-03-31 2020-09-29
 France hCoV-19/France/HDF8249/2020
 A26- C28T C36T C241T C884T C1059T C3037T T13006C C14408T A23403G G25563T C25688T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_565974
 2020-03-31 2020-09-30
 United States hCoV-19/USA/MI-MDHHS-SC21913/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565978
 2020-03-31 2020-09-30
 United States hCoV-19/USA/MI-MDHHS-SC21917/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C1059T C3037T C14408T A23403G G25563T C29750T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_568558
 2020-03-31 2020-10-02
 Japan hCoV-19/Japan/NGY-NNH-003/2020
 ATTAAAGGTTTATACC1- C241T C313T C3037T C14408T A23403G GGG28881AAC TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

MT380729
 2020-03-31 2020-04-24
 United States SARS-CoV-2/human/USA/VI-CDC-1999/2020
 C241T C1059T C3037T C9724T T10472Y T11974C C14408T A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAAAA29883-

MT506707
 2020-03-31 2020-05-21
 United States SARS-CoV-2/human/USA/COVID19-AK087/2020
 ATTAAAGGTTTATACCTTCC1- C241T C1059T C3037T T6778W T7082Y C14006A C14408T A23403G C23423T G25563T G28044T

MT706210
 2020-03-31 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-89/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T C3037T C11653T C14408T C18705T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706218
 2020-03-31 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-98/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706221
 2020-03-31 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-101/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11417T T14073C C14408T A23403G A23947G G25855T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706227
 2020-03-31 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-107/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11417T T14073C C14408T A23403G A23947G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706230
 2020-03-31 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-110/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3871T G9053C C14408T A23403G T29008C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706231
 2020-03-31 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-111/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T C22687T A23403G G25563T C25671T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706233
 2020-03-31 2020-07-03
 United States SARS-CoV-2/human/USA/CO-UW-113/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C5826T C14408T G20356T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706235
 2020-03-31 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-115/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3871T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT810480
 2020-03-31 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1381-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C379A C1059T C3037T C3885T G4657A C14408T A19453C G21578T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811182
 2020-03-31 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0135-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C1887T C3037T C14408T C15346T C19269T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811186
 2020-03-31 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0477-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T C16762T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811190
 2020-03-31 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0483-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T G4504A C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811191
 2020-03-31 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0484-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C988T C1059T C3037T C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811197
 2020-03-31 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0494-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- G431A C1059T G2600A C3037T C7119T C14408T A23403G G25563T T27634C CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811207
 2020-03-31 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0506-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C6629T C14408T C23277T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811208
 2020-03-31 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0508-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T C18115T C18377T A23403G A25182C G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811330
 2020-03-31 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0709-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C13487T C14408T C16762T A23403G G25563T C26885T A29112T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811380
 2020-03-31 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0801-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811382
 2020-03-31 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0803-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C988T C1059T C3037T C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811388
 2020-03-31 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0813-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C4540T G4904T G5206T C14408T A23403G C24138T C25350T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811397
 2020-03-31 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0830-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- G431A C1059T G2600A C3037T C7119T C14408T A23403G G25563T T27634C CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811399
 2020-03-31 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0832-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T C16762T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811403
 2020-03-31 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0837-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T C16762T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811441
 2020-03-31 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0975-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C13487T C14408T C16762T A23403G G25563T C26885T A29112T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811446
 2020-03-31 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0980-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T G4504A C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811448
 2020-03-31 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0982-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T A3938C T8996G C14408T G17014T A23403G G25563T G26769T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811454
 2020-03-31 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0991-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C6629T C14408T C23277T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811654
 2020-03-31 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0140-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T A23403G G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811657
 2020-03-31 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0143-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T A23403G A24952G G25563T C27964T C28826T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811676
 2020-03-31 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0162-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T A23403G G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811678
 2020-03-31 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0164-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C10319T C14408T G16622A A23403G G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811688
 2020-03-31 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0207-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T G4148T C10188T C14408T C17440T A23403G T24982C G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811694
 2020-03-31 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0264-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- AAGTCATTT686- C1059T G2808A C3037T G3582T C14408T A23403G G25563T A26433G CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811696
 2020-03-31 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0266-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C10319T C14408T A23403G G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811697
 2020-03-31 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0267-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C6285T C14408T A23403G G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811701
 2020-03-31 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0271-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T A23403G G25563T C27964T T29128C CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811705
 2020-03-31 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0275-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C10319T C14408T A23403G G25563T C27600T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811706
 2020-03-31 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0276-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T C21629A A23403G G25563T C27964T C29347T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811709
 2020-03-31 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0279-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T G6362A C10188T C14408T A23403G T24982C G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811711
 2020-03-31 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0281-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C10319T C14408T C19586A C21627T A23403G G25563T G26209T C27654T C27964T C29025T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811713
 2020-03-31 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0283-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T G8131T C10319T C14408T A23403G G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811716
 2020-03-31 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0286-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T T21968C A23403G G25563T C25886T C27964T T29302C CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811719
 2020-03-31 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0289-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C10319T C14408T C19586A C21304A C21627T A23403G G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT845877
 2020-03-31 2020-08-06
 Germany SARS-CoV-2/human/DEU/SC2_REGS25568233R/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T C18788T A23403G G25563T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

MT956912
 2020-03-31 2020-09-03
 Spain SARS-CoV-2/human/ESP/HUD-70065641/2020
 C241T C3037T C14408T A23403G

MW030199
 2020-03-31 2020-09-22
 Peru SARS-CoV-2/human/PER/covper056/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGT1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC C29675- ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

NMDC60013169
 2020-03-31 2020-06-01
 China hCoV-19/Guangzhou/ID108/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G C29870A

EPI_ISL_414543 LR878332
 2020-03-xx 2020-03-13
 Netherlands hCoV-19/Netherlands/NoordBrabant_34/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- C11572T C18647T T25612G T26274C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_418925 MT263438
 2020-03-xx 2020-03-30
 United States SARS-CoV-2/human/USA/UNKNOWN-UW358/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C241T C3037T C14408T A23403G C25452T

EPI_ISL_418941 MT263454
 2020-03-xx 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW374/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- CC36TA C8782T C17326T C17747T A17858G A17884G C18060T G19645T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_419691
 2020-03-xx 2020-04-03
 Latvia hCoV-19/Latvia/ChVir2025/2020
 ATTA1- C241T T658C C3037T C14408T C22414T A23403G A24862G C28629T C29253T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_419692
 2020-03-xx 2020-04-03
 Belarus hCoV-19/Belarus/ChVir2072/2020
 ATTAAAGGTTT1- G1397A G11083T T16857C T17659G C18086T T28688C C28849G G29742T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_419693
 2020-03-xx 2020-04-03
 Belarus hCoV-19/Belarus/ChVir2073/2020
 ATTAAAG1- C241T C3037T C14408T A20255G A23403G T27522C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_420065
 2020-03-xx 2020-04-04
 Estonia hCoV-19/Estonia/ChVir1982/2020
 C241T C3037T A11438G C14408T A23403G C27046T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_420066
 2020-03-xx 2020-04-04
 Estonia hCoV-19/Estonia/ChVir1983/2020
 C241T C3037T A11438G C14408T A23403G C27046T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_420067
 2020-03-xx 2020-04-04
 Estonia hCoV-19/Estonia/ChVir1985/2020
 ATTAAAGGTT1- C241T C3037T C14408T A23403G G24077T T29173Y AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_420540
 2020-03-xx 2020-04-06
 Estonia hCoV-19/Estonia/ChVir2148/2020
 ATTAAA1- C241T C1059T C3037T C14408T A17270G G17658T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_422968
 2020-03-xx 2020-04-12
 United States hCoV-19/USA/UN-UW-1331/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGA1- C5170T C8782T C16468T T17673C C17747T A17858G C18060T T28144C A29903-

EPI_ISL_424248 MT326173
 2020-03-xx 2020-04-12
 United States SARS-CoV-2/human/USA/UNKNOWN-UW-1773/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAA1- C3037T C14408T G17964A A23403G C23575T A29903-

EPI_ISL_424353
 2020-03-xx 2020-04-09
 United States hCoV-19/USA/NC_200173/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T C26801T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_424354
 2020-03-xx 2020-04-08
 United States hCoV-19/USA/NC_200189/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_424367
 2020-03-xx 2020-04-13
 Iceland hCoV-19/Iceland/343/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_424368
 2020-03-xx 2020-04-13
 Iceland hCoV-19/Iceland/344/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_424369
 2020-03-xx 2020-04-13
 Iceland hCoV-19/Iceland/345/2020
 T7876A G11083T C18395T C21614T G22225T G26144T

EPI_ISL_424370
 2020-03-xx 2020-04-13
 Iceland hCoV-19/Iceland/346/2020
 C241T C1059T C3037T C14408T A23403G G25563T G28048T

EPI_ISL_424371
 2020-03-xx 2020-04-13
 Iceland hCoV-19/Iceland/347/2020
 C241T C1059T C3037T C14408T C20178T A23403G G25563T

EPI_ISL_424534
 2020-03-xx 2020-04-13
 Iceland hCoV-19/Iceland/512/2020
 C241T C3037T C14408T C16289T A19960G A23403G G25429T

EPI_ISL_424537
 2020-03-xx 2020-04-13
 Iceland hCoV-19/Iceland/515/2020
 C241T C3037T A11839G C14408T G16377T T19839C A23403G G23856A GGG28881AAC

EPI_ISL_424540
 2020-03-xx 2020-04-13
 Iceland hCoV-19/Iceland/519/2020
 G1440A G2891A A4140G

EPI_ISL_424541
 2020-03-xx 2020-04-13
 Iceland hCoV-19/Iceland/520/2020
 C241T T2931C C3037T C14408T C16289T A19960G A23403G G25429T

EPI_ISL_424542
 2020-03-xx 2020-04-13
 Iceland hCoV-19/Iceland/521/2020
 T514C ATG1605- C17410T

EPI_ISL_424548
 2020-03-xx 2020-04-13
 Iceland hCoV-19/Iceland/527/2020
 T3034C G11083T C14805T C16054T T16521C T17247C T17859C G26144T G29751C

EPI_ISL_424549
 2020-03-xx 2020-04-13
 Iceland hCoV-19/Iceland/528/2020
 G1440A G2891A A4140G

EPI_ISL_424550
 2020-03-xx 2020-04-13
 Iceland hCoV-19/Iceland/529/2020
 G1440A G2891A A4140G

EPI_ISL_424860
 2020-03-xx 2020-04-13
 United States hCoV-19/USA/GA_2055/2020
 T490A C3177T C8782T C11824T T18736C C24034T T26729C G28077C T28144C A29700G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424862
 2020-03-xx 2020-04-13
 United States hCoV-19/USA/GA_2120/2020
 T490A C3177T C8782T T18736C C24034T T26729C C27635Y T27698G G28077C C28093Y T28144C A29700G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424863
 2020-03-xx 2020-04-13
 United States hCoV-19/USA/GA_2185/2020
 C8782T C16466Y C17747T A17858G C18060T GG18505RK T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424983
 2020-03-xx 2020-04-08
 United States hCoV-19/USA/NC_200191/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_424987
 2020-03-xx 2020-04-08
 United States hCoV-19/USA/NC_200181/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- T490A C3177T C8782T C15960T T18736C G19684T C24034T T26729C C27635T G28077C T28144C A29700G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_424993
 2020-03-xx 2020-04-14
 France hCoV-19/France/KRA-ROB/2020
 C241T A618G C3037T C14408T C15324T A23403G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_425176
 2020-03-xx 2020-04-14
 United States hCoV-19/USA/WI-UW-119/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11417T T14073C C14408T A23403G A23947G T27348C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_426418 MT344946
 2020-03-xx 2020-04-15
 United States SARS-CoV-2/human/USA/GA_2147/2020
 C6312A G11083T C13730T C23929T C28311T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426419 MT344947
 2020-03-xx 2020-04-15
 United States SARS-CoV-2/human/USA/GA_2275/2020
 C241T C3037T C14408T C14809Y C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426508
 2020-03-xx 2020-04-17
 United States hCoV-19/USA/AZ-TG268417/2020
 C241T C1059T C3037T C11919T C14408T A23403G G25563T G27382T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_432311
 2020-03-xx 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-26B6D/2020
 C241T C3037T C14408T A23403G G25617T GGG28881AAC

EPI_ISL_434562
 2020-03-xx 2020-04-21
 Japan hCoV-19/Japan/TKYE6947/2020
 G11083T C14408T C26111T C29635T

EPI_ISL_434616
 2020-03-xx 2020-04-30
 France hCoV-19/France/OCC-1/2020
 C241T C1427T C3037T G5305A G9422T G11083T C14408T A20262G A23403G G28739T GGG28881AAC

EPI_ISL_434617
 2020-03-xx 2020-04-30
 France hCoV-19/France/OCC-2/2020
 C241T C1427T C2485T C3037T G5305A G7472A G9422T C14408T C16247T A20262G A23403G G25218T GGG28881AAC

EPI_ISL_434618
 2020-03-xx 2020-04-30
 France hCoV-19/France/OCC-3/2020
 C241T C1427T C3037T G5305A G9422T C14408T A20262G A23403G G28739T GGG28881AAC

EPI_ISL_434619
 2020-03-xx 2020-04-30
 France hCoV-19/France/OCC-4/2020
 C241T C1427T C3037T G5305A G7472A G9422T C14408T G19327A A20262G T22016A A23403G T27495G GGG28881AAC

EPI_ISL_434620
 2020-03-xx 2020-04-30
 France hCoV-19/France/OCC-5/2020
 C241T C1427T C3037T G3419A G3871T C13517T C14408T A23403G GGG28881AAC

EPI_ISL_434621
 2020-03-xx 2020-04-30
 France hCoV-19/France/OCC-6/2020
 C241T C3037T C14408T C15324T C19602T A23403G

EPI_ISL_434622
 2020-03-xx 2020-04-30
 France hCoV-19/France/OCC-7/2020
 C241T C3037T G7472A C14408T C15324T C19602T A21245G A23403G

EPI_ISL_434623
 2020-03-xx 2020-04-30
 France hCoV-19/France/OCC-8/2020
 C241T C3037T C14408T C15324T C19602T A23403G

EPI_ISL_434624
 2020-03-xx 2020-04-30
 France hCoV-19/France/OCC-9/2020
 C241T C3037T C7203T C14408T C15324T C19602T A23403G

EPI_ISL_434625
 2020-03-xx 2020-04-30
 France hCoV-19/France/OCC-10/2020
 C241T C3037T G7472A C14408T C15324T C19602T A23403G

EPI_ISL_435286
 2020-03-xx 2020-05-04
 Israel hCoV-19/Israel/CVL-n6196/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_435289
 2020-03-xx 2020-05-04
 Israel hCoV-19/Israel/CVL-nL19/2020
 C241T C1059T C3037T C14408T G15243T A23403G G25563T

EPI_ISL_435292
 2020-03-xx 2020-05-04
 Israel hCoV-19/Israel/CVL-nL33/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_435723
 2020-03-xx 2020-05-05
 Poland hCoV-19/Poland/Wro-01/2020
 ATTAAAGGTT1- C241T C313T C3037T C14408T A23403G C27046T GGG28881AAC CACCGAGGCCACGCGGAGTACGATCGAGTG29730- AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_444487
 2020-03-xx 2020-05-13
 Sweden hCoV-19/Sweden/KI-CTMR-V300037768-3D/2020
 ATTA1TTGCGTGTTTTACAG TTT9CCGCTATAACA C241T C1059T C3037T G12514T C13862T C14408T A23403G G24368T G25563T AAAAAA29873TGCGCC AAAA29880TTGT AA29885GC AAAAAAAAAAAAAAAA29888CG

EPI_ISL_444488
 2020-03-xx 2020-05-13
 Sweden hCoV-19/Sweden/KI-CTMR-V300056977-1H/2020
 ATTAAAGGTTTA1- C241T C1059T C3037T C14408T A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_444489
 2020-03-xx 2020-05-13
 Sweden hCoV-19/Sweden/KI-CTMR-V300057201-8E/2020
 ATTAAAGGTTTA1- C241T C1059T C3037T C14408T A23403G G24368T G25563T A29876C A29878C A29880T AA29882GC -AAA29886TCTTTAATCAGTGTGTAACATTGGG AA29891GG AAAA29894CTTG A29901G A29903GCCACC

EPI_ISL_444490
 2020-03-xx 2020-05-13
 Sweden hCoV-19/Sweden/KI-CTMR-V300037768-4D/2020
 ATTAAAGGTTTA1- C241T C1059T C3037T C14408T A22102C A23403G G24368T G25563T CATGCAGACCACACAAGG29537- ATGA29866GCTG AA29871CT A29874T AAA29876TGG A29881G AAAAA29883GCCCT AAAAA29890TGTGT AA29899TT A29903TTTTAGTAGTG

EPI_ISL_444491
 2020-03-xx 2020-05-13
 Sweden hCoV-19/Sweden/KI-CTMR-V300037768-8A/2020
 A1G A4C G7T TA11- T13A C241T C1059T C3037T G3251T C14408T G17562T G18186T A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_444492
 2020-03-xx 2020-05-13
 Sweden hCoV-19/Sweden/KI-CTMR-V300056977-4A/2020
 ATTAAAGGTTTA1- C241T C3037T C14408T A23403G C23929T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872T

EPI_ISL_447654 MT470100
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/10027AA/2020
 A2480G C2558T G11083T C14805T G22021T G24095T G26144T

EPI_ISL_447655 MT470101
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/70001GR/2020
 C241T C3037T C14177T C14408T C15324T A23403G

EPI_ISL_447656 MT470102
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/40004SR/2020
 C241T C3037T C14408T C15324T A23403G

EPI_ISL_447657 MT470103
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/50010DC/2020
 C241T C3037T C14408T C15852T A23403G C27046T GGG28881AAC

EPI_ISL_447658 MT470104
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/40005BH/2020
 C66T C7334T A7479G G11083T C14805T C15222T T17247C C21575T C25572T G26144T

EPI_ISL_447659 MT470105
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/60003NG/2020
 C2416T C3037T G8371T A23403G G25563T

EPI_ISL_447660 MT470106
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/10036BG/2020
 C241T C3037T C14408T C15324T A23403G G28202A

EPI_ISL_447661 MT470107
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/10037CJ/2020
 C241T C2416T C3037T C14408T A23403G G25563T G27382T

EPI_ISL_447662 MT470108
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/40006SG/2020
 A2480G C2558T G11083T C14805T G24095T G26144T

EPI_ISL_447663 MT470109
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/10030NV/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_447664 MT470110
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/10040LJ/2020
 C241T C3037T C14408T C15324T A23403G

EPI_ISL_447665 MT470111
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/10041MR/2020
 C6040T C6312A G11083T C13730T C23929T C28311T

EPI_ISL_447666 MT470112
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/20001SE/2020
 C241T C2416T C3037T G8371T C14408T A23403G G25563T

EPI_ISL_447667 MT470113
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/10048SA/2020
 C241T C3037T C14408T C15324T A23403G C24621T

EPI_ISL_447668 MT470114
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/10046GM/2020
 C241T C3037T A3428C C14408T C15324T A23403G

EPI_ISL_447669 MT470115
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/10029DT/2020
 C241T C14408T A23403G

EPI_ISL_447670 MT470116
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/10031BS/2020
 C241T C3037T C6541T C14408T C23393T A23403G G29260T

EPI_ISL_447671 MT470117
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/60002VV/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_447672 MT470118
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/10032KL/2020
 C241T C3037T C14408T C15324T A23403G

EPI_ISL_447673 MT470119
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/50008KC/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_447674 MT470120
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/10033ZM/2020
 C241T C1059T C3037T C14408T A23403G G25563T G26101T

EPI_ISL_447675 MT470121
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/10034HM/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_447676 MT470122
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/10050RA/2020
 A2480G C2558T G11083T C14805T C22088A G24095T G26144T

EPI_ISL_447677 MT470123
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/10045DZ/2020
 C241T C2416T C3037T G11083T C14322T C14408T A23403G G25563T T26038C A28254T

EPI_ISL_447678 MT470124
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/10051SM/2020
 C241T C3037T C14408T C15324T G15380T C16178T A23403G

EPI_ISL_447679 MT470125
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/10063BI/2020
 C241T T8004C G20477T G22698T A23403G C25350T C25609T C26728T GGG28881AAC

EPI_ISL_447680 MT470126
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/10066GJ/2020
 C241T C1059T C3037T A9848G C14408T A23403G G25563T T29867A

EPI_ISL_447681 MT470127
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/10069NM/2020
 C241T C3037T C6016A T10561C C14408T C15324T C21575T A23403G

EPI_ISL_447682 MT470128
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/10071BR/2020
 C241T C2416T C3037T C14408T A23403G G25563T

EPI_ISL_447683 MT470129
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/10060KV/2020
 

EPI_ISL_447684 MT470130
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/10074LD/2020
 

EPI_ISL_447685 MT470131
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/10072CG/2020
 

EPI_ISL_447686 MT470132
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/10076MH/2020
 C241T C1059T C3037T T13006C C14408T C23277T A23403G G25563T C25688T

EPI_ISL_447687 MT470133
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/10078MA/2020
 C241T C3037T C14408T C15324T A23403G

EPI_ISL_447688 MT470134
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/10057CJ/2020
 C241T G6975T C6982T C14408T A23403G G25563T G29777T

EPI_ISL_447689 MT470135
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/10062MD/2020
 C2416T C3037T C14408T A23403G G25563T A25853G

EPI_ISL_447690 MT470136
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/10059IS/2020
 C241T C3037T C12076T C14408T C15324T A23403G

EPI_ISL_447691 MT470137
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/10068ND/2020
 C241T A23403G

EPI_ISL_447692 MT470138
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/40007RD/2020
 C241T C3037T C14408T C15324T A23403G

EPI_ISL_447693 MT470139
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/5003KM/2020
 A2480G C2558T G11083T C14805T G24095T G26144T

EPI_ISL_447694 MT470140
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/50002BS/2020
 C241T C3037T C14408T C15324T A23403G

EPI_ISL_447695 MT470141
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/10004CF/2020
 

EPI_ISL_447696 MT470142
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/10009EE/2020
 C11758T

EPI_ISL_447697 MT470143
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/10008DM/2020
 C241T C3037T C14408T C15324T A23403G

EPI_ISL_447698 MT470144
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/50001AR/2020
 C241T C1059T C3037T C14408T C14925T C16045T A23403G C23589T C25047T G25563T

EPI_ISL_447699 MT470145
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/10010LA/2020
 T1372C C1420T A2480G C2558T G11083T C14805T G24095T G26144T

EPI_ISL_447700 MT470146
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/10014BC/2020
 C241T T778C C1059T C3037T T13006C C14408T A23403G G25563T C25688T

EPI_ISL_447701 MT470147
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/10080AA/2020
 C241T C1059T C3037T C10582T C14408T A23403G G25563T C27059T

EPI_ISL_447702 MT470148
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/10019LM/2020
 C241T C3037T C14408T C15324T A23403G

EPI_ISL_447703 MT470149
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/10018HJ/2020
 C241T C2416T C3037T C4900T C14408T A23403G G25563T

EPI_ISL_447704 MT470150
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/10020MM/2020
 

EPI_ISL_447705 MT470151
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/50005JM/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_447706 MT470152
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/50004CS/2020
 A2480G C2558T G11083T C14805T G24095T G26144T

EPI_ISL_447707 MT470153
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/10016DC/2020
 C241T C3037T C14408T C15324T C21575T A23403G

EPI_ISL_447708 MT470154
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/10015BY/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_447709 MT470155
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/10012BM/2020
 C241T C3037T C14408T C15324T A23403G

EPI_ISL_447710 MT470156
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/10017GS/2020
 C241T C313T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_447711 MT470157
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/10013BA/2020
 C241T C1059T C3037T C14184T C14408T A23403G G25563T

EPI_ISL_447712 MT470158
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/10021SB/2020
 

EPI_ISL_447713 MT470159
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/10011AS/2020
 A2480G C2558T C8722T G11083T C14805T A15033C G24095T G26144T

EPI_ISL_447714 MT470160
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/10023FD/2020
 C241T C1059T C3037T T10933C C14408T T17142C T22707A A23403G G25563T

EPI_ISL_447715 MT470161
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/10022AR/2020
 C241T C2416T C3037T G8371T C14408T A23403G G25563T

EPI_ISL_447716 MT470162
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/50011LM/2020
 C241T C3037T C14408T C15324T A23403G

EPI_ISL_447717 MT470163
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/10001DM/2020
 

EPI_ISL_447718 MT470164
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/50007PI/2020
 C241T C3037T C14408T C15324T A23403G C27208T

EPI_ISL_447719 MT470165
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/10003SN/2020
 C241T C3037T C14408T C15324T A23403G

EPI_ISL_447720 MT470166
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/10025GM/2020
 C241T C1059T C3037T G11083T C14408T A23403G G25563T G29422A

EPI_ISL_447721 MT470167
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/10002PM/2020
 C241T C3037T C14408T C15324T A23403G

EPI_ISL_447722 MT470168
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/10026SL/2020
 C241T C1059T C3037T C14408T C14925T C16045T C18167T A23403G C23589T C25047T G25563T

EPI_ISL_447723 MT470169
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/30001MB/2020
 C241T C2416T C3037T C14408T A23403G G25563T

EPI_ISL_447724 MT470170
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/40003KA/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_447725 MT470171
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/10007LJ/2020
 C241T C3037T C14408T T19839C A23403G GGG28881AAC

EPI_ISL_447726 MT470172
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/10028CD/2020
 C241T C1059T C3037T C14408T A23403G G25489T G25563T

EPI_ISL_447727 MT470173
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/10006HC/2020
 C241T C3037T C14408T C15324T A23403G

EPI_ISL_447728 MT470174
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/10053BP/2020
 

EPI_ISL_447729 MT470175
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/10064DR/2020
 

EPI_ISL_447730 MT470176
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/10065EE/2020
 C241T C3037T T10561C C14408T C15324T A23403G C26895T C29013T

EPI_ISL_447731 MT470177
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/10070SK/2020
 C3037T A10081T C14408T C22281T A23403G

EPI_ISL_447732 MT470178
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/50006PT/2020
 C241T C2416T C3037T G8371T C14408T A23403G G25563T

EPI_ISL_447733 MT470179
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/40002VJ/2020
 C241T C2416T G12079C C14408T C23220A

EPI_ISL_450496
 2020-03-xx 2020-05-21
 Lithuania hCoV-19/Lithuania/ChVir2225/2020
 ATTAAAGGT1- C241T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_450497
 2020-03-xx 2020-05-21
 Lithuania hCoV-19/Lithuania/ChVir2226/2020
 ATTAAAGGTTT1- T514C ATG1605- G5629T C17410T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_450498
 2020-03-xx 2020-05-21
 Estonia hCoV-19/Estonia/ChVir1984/2020
 ATTAAAG1- C241T C3037T G11761T C14408T A23403G C27046T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_451948
 2020-03-xx 2020-05-25
 Belarus hCoV-19/Belarus/ChVir2070/2020
 ATTAAAGGTTTAT1- G1397A G11083T T16857C T17659G C18086T T28688C C28849G G29742T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_454796
 2020-03-xx 2020-05-28
 United States hCoV-19/USA/NC_200217/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C11916T C14408T A23403G G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_454797
 2020-03-xx 2020-05-28
 United States hCoV-19/USA/NC_200219/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_454799
 2020-03-xx 2020-05-28
 United States hCoV-19/USA/NC_200241/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T A1317G C3037T C14408T C20031T A23403G G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_454800
 2020-03-xx 2020-05-28
 United States hCoV-19/USA/NC_200242/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- T490A C3177T T4885C C8782T C15960T T18736C G19684T C24034T T26729C C27635T G28077C T28144C A29700G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_454801
 2020-03-xx 2020-05-28
 United States hCoV-19/USA/NC_200243/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- T490A C3177T C8782T C9430T A13962G T18736C T23677C C24034T T26729C C27635T G28077C T28144C A29700G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_454802
 2020-03-xx 2020-05-28
 United States hCoV-19/USA/NC_200244/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_454803
 2020-03-xx 2020-05-28
 United States hCoV-19/USA/NC_200245/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_454804
 2020-03-xx 2020-05-28
 United States hCoV-19/USA/NC_200247/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C8782T T14568C C17747T A17858G C18060T T28144C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_454806
 2020-03-xx 2020-05-28
 United States hCoV-19/USA/NC_200255/2020
 ATTAAAGGTTTATACCTTCCCAGG1- T490A G1413T C3177T C8782T C15960T T18736C G19684T C24034T T26729C C27635T G28077C T28144C A29700G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_454807
 2020-03-xx 2020-05-28
 United States hCoV-19/USA/NC_200256/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C1059T C3037T C14408T A23403G G25563T C29708T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_454808
 2020-03-xx 2020-05-28
 United States hCoV-19/USA/NC_200259/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- T490A C3177T C8782T C9891T C15960T G17509T T18736C G19684T C24034T T26729C C27635T G28077C T28144C A29700G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_454814
 2020-03-xx 2020-05-28
 United States hCoV-19/USA/NC_200300/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C3589T C8782T C17747T A17858G C18060T T28144C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_454815
 2020-03-xx 2020-05-28
 United States hCoV-19/USA/NC_200306/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T T29847G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_454816
 2020-03-xx 2020-05-28
 United States hCoV-19/USA/NC_200310/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C11653T C14408T T18471C A23403G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_454820
 2020-03-xx 2020-05-28
 United States hCoV-19/USA/NC_200323/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C3589T C8782T C17747T A17858G C18060T T27408C T28144C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_454823
 2020-03-xx 2020-05-28
 United States hCoV-19/USA/NC_200331/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_454824
 2020-03-xx 2020-05-28
 United States hCoV-19/USA/NC_200330/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- T490A C3177T C8782T C9430T A13962G T18736C T23677C C24034T T26729C C27635T G28077C T28144C A29700G GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_454826
 2020-03-xx 2020-05-28
 United States hCoV-19/USA/NC_200253/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- T490A G1413T C3177T C8782T C15960T T18736C G19684T C24034T T26729C C27635T G28077C T28144C A29700G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_457719
 2020-03-xx 2020-06-02
 Estonia hCoV-19/Estonia/ChVir4261/2020
 ATTAAAGG1- C241T C1059T C3037T C11919T C14408T C20077T G22331A A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_457720
 2020-03-xx 2020-06-02
 Estonia hCoV-19/Estonia/ChVir4262/2020
 ATTAAAGGTT1- C241T C1059T C3037T C9565T A11983G C14408T A21076G A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_457722
 2020-03-xx 2020-06-02
 Estonia hCoV-19//Estonia/ChVir4266/2020
 ATT1- C241T C3037T C6401T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_457723
 2020-03-xx 2020-06-02
 Estonia hCoV-19/Estonia/ChVir4285/2020
 ATTAAAGGTT1- C241T C3037T C11074T C14408T C18877T A23403G G24197T G25563T C26735T C28290T G29755T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_457725
 2020-03-xx 2020-06-02
 Estonia hCoV-19/Estonia/ChVir4286/2020
 ATTA1- C241T C3037T C4234T C14408T T19839C A23403G T27405G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_457727
 2020-03-xx 2020-06-02
 Estonia hCoV-19/Estonia/ChVir4287/2020
 ATT1- C241T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_457729
 2020-03-xx 2020-06-02
 Estonia hCoV-19/Estonia/ChVir4292/2020
 ATTAAAGGTT1- C241T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_457731
 2020-03-xx 2020-06-02
 Estonia hCoV-19/Estonia/ChVir4293/2020
 ATTAAAGGTTTATAC1- C241T ATG518- C1878T G2305T C3037T G6536R C14408T A23403G C29625T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_457734
 2020-03-xx 2020-06-02
 Estonia hCoV-19/Estonia/ChVir4298/2020
 ATTAAAGGTTT1- C241T C3037T C4234T C14408T T19839C A23403G GGG28881AAC C29545Y AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_457735
 2020-03-xx 2020-06-02
 Estonia hCoV-19/Estonia/ChVir4299/2020
 ATTAAAGGT1- C241T C3037T C4234T C14408T T19839C A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_457737
 2020-03-xx 2020-06-02
 Estonia hCoV-19/Estonia/ChVir4301/2020
 ATTAAAGGTT1- C241T C3037T C4234T C14408T T19839C A23403G GGG28881AAC C29545T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_457738
 2020-03-xx 2020-06-02
 Estonia hCoV-19/Estonia/ChVir4305/2020
 ATTAAAGGTTTA1- C32T C241T C3037T C4234T C14408T T19839C A23403G G25437T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_457739
 2020-03-xx 2020-06-02
 Estonia hCoV-19/Estonia/ChVir4312/2020
 ATTAAAGGTTTATA1- C241T C3037T C7851T C10582T C14408T T19839C C21575T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_457740
 2020-03-xx 2020-06-02
 Estonia hCoV-19/Estonia/ChVir4313/2020
 ATTAAAGGTT1- C241T C3037T C14408T C19145T T19839C C21575T G22487C A23403G A25492G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_457828
 2020-03-xx 2020-06-02
 Kenya hCoV-19/Kenya/NIC_084/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A4457G G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_460609
 2020-03-xx 2020-06-06
 Canada hCoV-19/Canada/BC_15926629/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_460610
 2020-03-xx 2020-06-06
 Canada hCoV-19/Canada/BC_16344159/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_460611
 2020-03-xx 2020-06-06
 Canada hCoV-19/Canada/BC_17045358/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T

EPI_ISL_460612
 2020-03-xx 2020-06-06
 Canada hCoV-19/Canada/BC_17422770/2020
 G1440A G2891A C4668T

EPI_ISL_460614
 2020-03-xx 2020-06-06
 Canada hCoV-19/Canada/BC_17548428/2020
 C241T C1059T C3037T C14408T G15760A A23403G G25563T

EPI_ISL_460615
 2020-03-xx 2020-06-06
 Canada hCoV-19/Canada/BC_18097749/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T

EPI_ISL_460616
 2020-03-xx 2020-06-06
 Canada hCoV-19/Canada/BC_18111443/2020
 C8782T C12294T C17747T A17858G C18060T T28144C G29736T

EPI_ISL_462446 LC549340
 2020-03-xx 2020-05-22
 Japan TKY3583_2020
 C241T C3037T C14408T G16744A A20268G G21190A A23403G T26301G

EPI_ISL_462757
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_18165111/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G16852T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462758
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_18507914/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6312A G11083T C13730T C23929T C28311T A29522G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462759
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_18547866/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C1616T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462760
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_18969070/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C589T G2305T C3037T C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462761
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_19421714/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462765
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_19518330/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C1616T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462766
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_19677629/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17747T A17858G C18060T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462767
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_19703911/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C1616T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462768
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_19704814/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17747T A17858G C18060T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462769
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_19785113/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C1616T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462771
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_20332712/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C1616T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462772
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_20363111/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C1616T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462774
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_20432317/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17747T A17858G C18060T T28144C G29736T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462775
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_20505516/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17747T A17858G C18060T C19011A C25916T T28144C C28163T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462776
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_20534610/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C1616T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462777
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_20639310/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C1616T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462778
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_20693717/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C1616T C3037T C8290T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462779
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_20722019/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C1616T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462780
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_20730616/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C1616T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462781
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_20734315/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G19677T A23403G C24904T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462782
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_20847524/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C1616T C3037T G5953T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462783
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_20855313/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C1616T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462784
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_21008811/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17747T A17858G C18060T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462786
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_21016029/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C8327T C14408T G21641T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462787
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_21022514/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G15760A A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462789
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_21085515/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C1616T C3037T G10105T C14408T A23403G C28724T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462790
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_21105219/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A618G C3037T C10279T C14408T C15324T A23403G C25614T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462791
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_21110314/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1048A G1440A G2891A G25681A A27669G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462792
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_21127214/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462793
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_21127913/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G19677T A23403G C24904T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462794
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_21146111/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6312A G11083T C11976T C13730T C23929T C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462798
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_21187418/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6312A G11083T C13730T C23929T C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462802
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_21228218/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A C4668T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462805
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_21317517/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C1616T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462806
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_21333019/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C3037T C12974T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462807
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_21346429/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17747T A17858G C18060T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462808
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_21350918/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C1616T C3037T G10105T C14408T A23403G C28724T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462809
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_21368114/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462810
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_21385821/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C1616T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462811
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_21388915/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8739T C8782T C17747T A17858G C18060T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462812
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_21426715/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C1616T C3037T C14408T A23403G G25726T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462813
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_21446719/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17747T A17858G C18060T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462814
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_21461212/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G15760A A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462815
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_21462515/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C1616T C3037T C4084T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462816
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_21466919/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C1616T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462818
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_21480617/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17747T A17858G C18060T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462819
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_21927217/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C1616T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462820
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_21993212/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462821
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_22032711/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C14724T C17747T A17858G C18060T A21203G T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462822
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_22037912/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C1616T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462824
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_22070527/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C1616T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462825
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_22156718/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T6178C C8782T C17747T A17858G C18060T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462826
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_22218811/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A G11417T C14408T G14829T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462827
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_22230811/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C1616T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462828
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_22332113/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T G11083T C17747T A17858G C18060T C24621T T28144C C28435T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462829
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_22349316/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C1616T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462830
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_22430814/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C1616T C3037T C14408T A23403G A29359T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462831
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_22451513/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C1616T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462833
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_22470913/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C1616T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462834
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_22473210/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C17639T A20268G A23403G A28222G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462835
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_22475116/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C1616T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462836
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_22511314/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C10789T C17747T A17858G C18060T C20132T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462837
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_22514413/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C10789T C17747T A17858G C18060T C20132T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462838
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_22946611/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17747T A17858G C18060T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462840
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_23064916/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C1616T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462841
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_23094312/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C1616T C3037T C6651T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462842
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_23098110/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17747T A17858G C18060T C25350T C27911T T28144C C29421T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462843
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_23108423/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C1616T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462992 MT576584
 2020-03-xx 2020-06-08
 Nigeria SARS-CoV-2/human/NGA/NG57752/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T C16575T A20374G A23403G GGG28881AAC CCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29801-

EPI_ISL_463186
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_23745918/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_463187
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_23815516/2020
 A187G C241T C3037T C6286A C14408T A23403G

EPI_ISL_463189
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_23918026/2020
 C8782T C17747T A17858G C18060T C26022T T28144C

EPI_ISL_463191
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_24044059/2020
 A187G C241T C1616T C3037T C14408T T22573C A23403G

EPI_ISL_463193
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_24150410/2020
 A2480G C2558T G11083T C14805T G26144T

EPI_ISL_463194
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_24165067/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_463195
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_24190425/2020
 C241T C3037T C14408T C18877T C21575T A23403G G25563T

EPI_ISL_463196
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_24192775/2020
 A187G C241T C1616T C3037T C14408T A23403G

EPI_ISL_463198
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_24201275/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_463199
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_24225776/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T

EPI_ISL_463200
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_24228539/2020
 A6502G G7911T G11083T C14805T G26144T G28842T

EPI_ISL_463201
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_24232310/2020
 G2883A G7561A C8782T C17747T A17858G C18060T G19109T G20491T T20745C T28144C G29000T

EPI_ISL_463202
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_24234949/2020
 C241T C3037T C14408T C18877T A23403G G25563T

EPI_ISL_463203
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_24235415/2020
 A187G C241T C1616T C3037T C14408T A23403G

EPI_ISL_463204
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_24239917/2020
 C241T C3037T C14408T G19677T A23403G C24904T GGG28881AAC

EPI_ISL_463205
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_24245374/2020
 C241T C3037T C14408T G19677T A23403G C24904T GGG28881AAC

EPI_ISL_463206
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_24252365/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_463207
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_24258528/2020
 A2480G C2558T G11083T A13265C C14805T G26144T

EPI_ISL_463208
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_24261010/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_463209
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_24271871/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_463210
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_24302962/2020
 A187G C241T C1616T C3037T C14408T A18187G A23403G

EPI_ISL_463211
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_24319756/2020
 A187G C241T C1616T C3037T C14408T A23403G A29112T

EPI_ISL_463212
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_24340030/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_463213
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_24340319/2020
 C6312A G11083T C13730T C23929T C28311T

EPI_ISL_463214
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_24360831/2020
 C241T C3037T T11320C C14408T C15324T A23403G

EPI_ISL_463215
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_24380644/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_463216
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_24825751/2020
 C8782T C17747T A17858G C18060T C22000A T28144C

EPI_ISL_463217
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_25143276/2020
 C8782T C17747T A17858G C18060T T28144C C29585T

EPI_ISL_463219
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_25336669/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T

EPI_ISL_463221
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_25376719/2020
 A187G C241T C1616T C3037T C14408T G17722T A23403G A29359T

EPI_ISL_463222
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_25384316/2020
 A187G C241T C1616T C3037T C14408T A23403G

EPI_ISL_463223
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_25390851/2020
 C241T C3037T C14408T C15324T A23403G

EPI_ISL_463224
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_25416870/2020
 A187G C241T C1616T C3037T C14408T A23403G C29311T

EPI_ISL_463225
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_25515215/2020
 A187G C241T C1616T C3037T C14408T A23403G

EPI_ISL_463226
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_25574199/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_463228
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_25856970/2020
 C8782T C10416T C17747T A17858G C18060T A20216G T28144C

EPI_ISL_463229
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_25857092/2020
 C8782T C10416T C17747T A17858G C18060T A20216G T28144C

EPI_ISL_463230
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_26101196/2020
 C241T C1059T C3037T C4940T C12513T C14408T A23403G G25563T

EPI_ISL_463231
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_26172976/2020
 C6606T C8782T C17747T A17858G C18060T T28144C

EPI_ISL_463232
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_26384651/2020
 A187G C241T C1616T C3037T C14408T A23403G

EPI_ISL_463235
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_26509737/2020
 A187G C241T C1616T C3037T C14408T A23403G

EPI_ISL_463236
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_26564890/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_463237
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_26584470/2020
 A187G C241T C1616T C3037T C14408T A23403G

EPI_ISL_463238
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_26585549/2020
 A187G C241T C1616T C3037T C14408T A23403G

EPI_ISL_463241
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_26591461/2020
 A187G C241T C1616T C3037T C14408T A23403G

EPI_ISL_463242
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_26602426/2020
 C8782T C17747T A17858G C18060T T28144C C29585T

EPI_ISL_463243
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_26605771/2020
 A187G C241T C1616T C3037T C14408T A23403G

EPI_ISL_463244
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_26611727/2020
 A187G C241T C1616T C3037T C14408T A23403G

EPI_ISL_463245
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_26624482/2020
 A187G C241T C1616T C3037T C14408T A23403G

EPI_ISL_463246
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_26625053/2020
 A187G C241T C1616T C3037T C14408T A23403G

EPI_ISL_463248
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_26646523/2020
 A187G C241T C1616T C3037T C14408T A23403G

EPI_ISL_463249
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_26649386/2020
 G1440A G2891A C7011T

EPI_ISL_463250
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_26650347/2020
 A187G C241T C1616T C3037T C14408T A23403G

EPI_ISL_463251
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_26654155/2020
 A187G C241T C1616T C3037T C14408T A23403G

EPI_ISL_463252
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_26656159/2020
 A187G C241T C1616T C3037T C14408T A23403G

EPI_ISL_463253
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_26659043/2020
 A187G C241T C1616T C3037T C14408T A23403G

EPI_ISL_463254
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_26693628/2020
 C241T C3037T C14408T C18877T A23403G G25563T

EPI_ISL_463256
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_26964094/2020
 C241T C3037T C14408T A16085G A20268G A23403G

EPI_ISL_463257
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_27007571/2020
 C241T C1059T C3037T C14408T A16233G A23403G G25563T C27964T

EPI_ISL_463258
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_27017413/2020
 A187G C241T C1616T C3037T C14408T A23403G

EPI_ISL_463259
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_27081621/2020
 A6502G G7911T G11083T C11750T C14805T G26144T G28842T

EPI_ISL_463260
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_27121841/2020
 A2480G C2558T G11083T C14805T G26144T

EPI_ISL_463261
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_27180562/2020
 A187G C241T C1616T C3037T C14408T G17722T A23403G A29359T

EPI_ISL_463262
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_27222254/2020
 C8782T C14724T C17747T A17858G C18060T A21203G T28144C

EPI_ISL_463263
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_27279444/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_463264
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_27280425/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_463265
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_27280641/2020
 A187G C241T C1616T C3037T C14408T A23403G

EPI_ISL_463266
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_27280776/2020
 A187G C241T C1616T C3037T C14408T A23403G

EPI_ISL_463267
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_27283916/2020
 A187G C241T C1616T C3037T C14408T A23403G

EPI_ISL_463268
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_27285211/2020
 C241T C3037T C14408T G19677T A23403G GGG28881AAC

EPI_ISL_463270
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_27298990/2020
 A187G C241T C1616T C3037T C14408T A23403G

EPI_ISL_463271
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_27302671/2020
 A187G C241T C1616T C3037T C14408T A23403G C25546T

EPI_ISL_463273
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_27303944/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_463274
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_27304064/2020
 A187G C241T C1616T C3037T C14408T A23403G

EPI_ISL_463275
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_27304554/2020
 A187G C241T C1616T C3037T C14408T A23403G

EPI_ISL_463276
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_27305318/2020
 A187G C241T C1616T C3037T C14408T A23403G

EPI_ISL_468725 LC553270
 2020-03-xx 2020-06-03
 Japan TKYE63442_2020
 ATTAAAGGTTTATA1- C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_477079
 2020-03-xx 2020-06-28
 Canada hCoV-19/Canada/BC_10404688/2020
 C241T C1059T C3037T C10138T C11916T C14408T C18998T T21769C A23403G G25563T G29540A

EPI_ISL_477080
 2020-03-xx 2020-06-28
 Canada hCoV-19/Canada/BC_10420892/2020
 A187G C241T C1616T C3037T C14408T A23403G

EPI_ISL_477081
 2020-03-xx 2020-06-28
 Canada hCoV-19/Canada/BC_13929277/2020
 A187G C241T C1616T C3037T C14408T A18187G A23403G

EPI_ISL_477085
 2020-03-xx 2020-06-28
 Canada hCoV-19/Canada/BC_16505592/2020
 G1738T C8782T G14197A C17747T A17858G C18060T C25207T T28144C

EPI_ISL_477086
 2020-03-xx 2020-06-28
 Canada hCoV-19/Canada/BC_16510082/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_477088
 2020-03-xx 2020-06-28
 Canada hCoV-19/Canada/BC_02038211/2020
 G1738T C8782T G14197A C17747T A17858G C18060T C25207T T28144C

EPI_ISL_479944
 2020-03-xx 2020-07-01
 Japan hCoV-19/Japan/PG-0260/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C8782T G16381A T17877C T28144C G28878A G29742A G29800C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_479945
 2020-03-xx 2020-07-01
 Japan hCoV-19/Japan/PG-0261/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C8782T G16381A T17877C T28144C G28878A G29742A AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_479946
 2020-03-xx 2020-07-01
 Japan hCoV-19/Japan/PG-0262/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C8782T G16381A T17877C C26139T T28144C G28878A G29742A AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_479947
 2020-03-xx 2020-07-01
 Japan hCoV-19/Japan/PG-0263/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T G16381A T17877C T28144C G28878A G29742A AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_479948
 2020-03-xx 2020-07-01
 Japan hCoV-19/Japan/PG-0264/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C8782T G16381A T17877C A26563G T28144C G28878A G29742A ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_479949
 2020-03-xx 2020-07-01
 Japan hCoV-19/Japan/PG-0265/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- A3309G C8782T C12473T G16381A T17877C T28144C G28878A G29742A AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_479950
 2020-03-xx 2020-07-01
 Japan hCoV-19/Japan/PG-0267/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C8782T G16381A T17877C T21925C T28144C G28878A G29742A AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_479951
 2020-03-xx 2020-07-01
 Japan hCoV-19/Japan/PG-0268/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C8782T G16381A T17877C T28144C G28878A G29742A AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_479952
 2020-03-xx 2020-07-01
 Japan hCoV-19/Japan/PG-0269/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACT1- C8782T G16381A T17877C T26355G T28144C G28878A G29742A TAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29817-

EPI_ISL_479953
 2020-03-xx 2020-07-01
 Japan hCoV-19/Japan/PG-0271/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C8782T G16381A T17877C T28144C G28878A G29742A TCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29834-

EPI_ISL_479954
 2020-03-xx 2020-07-01
 Japan hCoV-19/Japan/PG-0272/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C8782T G16381A T17877C T28144C G28878A G29742A ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_479955
 2020-03-xx 2020-07-01
 Japan hCoV-19/Japan/PG-0274/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C8782T G16381A T17877C T28144C G28878A G29742A TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_479956
 2020-03-xx 2020-07-01
 Japan hCoV-19/Japan/PG-0275/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C8782T G16381A T17877C T28144C G28878A G29742A ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_479957
 2020-03-xx 2020-07-01
 Japan hCoV-19/Japan/PG-0276/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- A3754T C8782T C9559T G16381A T17877C T28144C G28878A G29742A ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_479958
 2020-03-xx 2020-07-01
 Japan hCoV-19/Japan/PG-0277/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C8782T A13919G G16381A T17877C G25500T T28144C G28878A G29742A AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_479966
 2020-03-xx 2020-07-01
 Japan hCoV-19/Japan/PG-0287/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_489991
 2020-03-xx 2020-07-15
 Thailand hCoV-19/Thailand/Samut Songkhram-0942/2020
 ATTA1- C6312A G11083T C13730T G20670A C23929T C28311T G28845A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_498468
 2020-03-xx 2020-07-27
 Australia hCoV-19/Australia/ACT0001/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1397A T7225C T27384C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498472
 2020-03-xx 2020-07-27
 Australia hCoV-19/Australia/ACT0005/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10851T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498473
 2020-03-xx 2020-07-27
 Australia hCoV-19/Australia/ACT0006/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G374A C8782T A11849G C17747T A17858G C18060T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498477
 2020-03-xx 2020-07-27
 Australia hCoV-19/Australia/ACT0010/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G T25473C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498478
 2020-03-xx 2020-07-27
 Australia hCoV-19/Australia/ACT0011/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C13536T C14184T C14408T A23403G C23731T G28086T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498480
 2020-03-xx 2020-07-27
 Australia hCoV-19/Australia/ACT0013/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498483
 2020-03-xx 2020-07-27
 Australia hCoV-19/Australia/ACT0016/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498485
 2020-03-xx 2020-07-27
 Australia hCoV-19/Australia/ACT0018/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498486
 2020-03-xx 2020-07-27
 Australia hCoV-19/Australia/ACT0019/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498490
 2020-03-xx 2020-07-27
 Australia hCoV-19/Australia/ACT0023/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498491
 2020-03-xx 2020-07-27
 Australia hCoV-19/Australia/ACT0024/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G542A C3096T A7479G G11083T C14805T T17247C C25572T G26144T C28887T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498492
 2020-03-xx 2020-07-27
 Australia hCoV-19/Australia/ACT0025/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T13006C C14408T T18768C C21642T A23403G G25563T C25688T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498493
 2020-03-xx 2020-07-27
 Australia hCoV-19/Australia/ACT0026/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1079C G1397A T7225C C9319T G11083T C19862T T27384C T28688C C28957T G29742T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498494
 2020-03-xx 2020-07-27
 Australia hCoV-19/Australia/ACT0027/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C17898T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498495
 2020-03-xx 2020-07-27
 Australia hCoV-19/Australia/ACT0028/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10851T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498496
 2020-03-xx 2020-07-27
 Australia hCoV-19/Australia/ACT0029/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4540T C8782T T9477A C14805T G17590T G25979T T28144C C28311T C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498498
 2020-03-xx 2020-07-27
 Australia hCoV-19/Australia/ACT0031/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G A27675C A28765G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498499
 2020-03-xx 2020-07-27
 Australia hCoV-19/Australia/ACT0032/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G374A C1348T C8782T C17747T A17858G C18060T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498500
 2020-03-xx 2020-07-27
 Australia hCoV-19/Australia/ACT0033/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498501
 2020-03-xx 2020-07-27
 Australia hCoV-19/Australia/ACT0034/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T G26144T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498502
 2020-03-xx 2020-07-27
 Australia hCoV-19/Australia/ACT0035/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G374A C8782T C17747T A17858G C18060T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498503
 2020-03-xx 2020-07-27
 Australia hCoV-19/Australia/ACT0036/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10851T C14408T G20931T A23403G C23439T G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498506
 2020-03-xx 2020-07-27
 Australia hCoV-19/Australia/ACT0039/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498510
 2020-03-xx 2020-07-27
 Australia hCoV-19/Australia/ACT0043/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1514T C3037T G3892A C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498511
 2020-03-xx 2020-07-27
 Australia hCoV-19/Australia/ACT0044/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498512
 2020-03-xx 2020-07-27
 Australia hCoV-19/Australia/ACT0045/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498513
 2020-03-xx 2020-07-27
 Australia hCoV-19/Australia/ACT0046/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6312A G11083T C13730T C23929T C28311T G29742T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498514
 2020-03-xx 2020-07-27
 Australia hCoV-19/Australia/ACT0047/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C683T C2106T T4057C C21005T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498515
 2020-03-xx 2020-07-27
 Australia hCoV-19/Australia/ACT0048/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G11083T C14805T G26144T C27644T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498526
 2020-03-xx 2020-07-27
 Australia hCoV-19/Australia/ACT0064/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9430T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498529
 2020-03-xx 2020-07-27
 Australia hCoV-19/Australia/ACT0068/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4755T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498531
 2020-03-xx 2020-07-27
 Australia hCoV-19/Australia/ACT0071/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C2558T C11074T G11083T C14805T A21868T G26144T G28851T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498537
 2020-03-xx 2020-07-27
 Australia hCoV-19/Australia/ACT0077/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498542
 2020-03-xx 2020-07-27
 Australia hCoV-19/Australia/ACT0082/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T13270C C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_515288
 2020-03-xx 2020-08-19
 Thailand hCoV-19/Thailand/NIH_3623/2020
 ATTAAAG1- A895G C2942T G4390T C8782T C9598T G14857T G20134T G24047A T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_515289
 2020-03-xx 2020-08-19
 Thailand hCoV-19/Thailand/NIH_3710/2020
 ATTA1- A895G C2942T G4390T C8782T C9598T G20134T G24047A G27877T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_515290
 2020-03-xx 2020-08-19
 Thailand hCoV-19/Thailand/NIH_3713/2020
 ATTAAAGGTTTA1- A895G T1939G C2942T G4390T A8388G C8782T T8987A C9598T G13249T G20134T G24047A C27213T G27877T T28144C AAAA29900-

EPI_ISL_515291
 2020-03-xx 2020-08-19
 Thailand hCoV-19/Thailand/NIH_3744/2020
 ATTA1- T694C A895G C2942T C3768T G4390T C8782T C9598T G20134T G24047A G27877T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_515292
 2020-03-xx 2020-08-19
 Thailand hCoV-19/Thailand/NIH-3083/2020
 A4- G331A A895G C2942T A3778G G4390T T4839C A8388G C8782T T8987A C9598T G11083T G20134T G24047A G27877T T28144C AAAA29900-

EPI_ISL_515463
 2020-03-xx 2020-08-19
 Thailand hCoV-19/Thailand/Bangkok_3001/2020
 ATT1- A895G C2942T C3768T G4390T C8782T C9598T G20134T G24047A G27877T T28144C AAAAAAAAAAAA29892-

EPI_ISL_515465
 2020-03-xx 2020-08-19
 Thailand hCoV-19/Thailand/Bangkok_3049/2020
 ATTA1- A895G C2942T C3768T G4390T C8782T C9598T G20134T G24047A G27877T T28144C AAAAAAAAAAAA29892-

EPI_ISL_515470
 2020-03-xx 2020-08-19
 Thailand hCoV-19/Thailand/Nonthaburi_2953/2020
 A1- A895G C2942T G4390T C8782T C9598T G20134T G24047A G27877T T28144C AAAAAAAAAAAAAA29890-

EPI_ISL_515475
 2020-03-xx 2020-08-19
 Thailand hCoV-19/Thailand/Bangkok_2864/2020
 ATTAA1- A895G C2942T G4390T C8782T C9598T G20134T G24047A G27877T T28144C AAAAAAAAAAAAAA29890-

EPI_ISL_515477
 2020-03-xx 2020-08-19
 Thailand hCoV-19/Thailand/Bangkok_2867/2020
 ATTAA1- A895G C2942T G4390T C8782T C9598T G20134T G24047A T28144C A29886C AAAAAAAAAAAA29892-

EPI_ISL_516627
 2020-03-xx 2020-08-21
 Estonia hCoV-19/Estonia/ChVir4307/2020
 ATTAAAG1- C241T C3037T C14408T T19839C C21575T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_516988
 2020-03-xx 2020-08-24
 Slovakia hCoV-19/Slovakia/ChVir-1996/2020
 ATTAA1- C241T C884T C3037T C14408T A23403G A26530G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_516989
 2020-03-xx 2020-08-24
 Slovakia hCoV-19/Slovakia/ChVir-1998/2020
 ATTA1- C241T C2416T C3037T G8371T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_548148
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-1227/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C13862T C14408T A23403G C28836T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548149
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-20/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T C15324T C20133T A23403G C25433T C26110T C29546T A29740G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548150
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-2315/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G11083T C14408T C15324T A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548153
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-2480/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C8293T C14408T T18488C A23403G T24739C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548154
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-2482/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C8293T C14408T T18488C A23403G T24739C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548155
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-2578/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G C23575T G23587C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548156
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-2616/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548157
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-2655/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C8293T C14408T T18488C A23403G T24739C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548159
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-2798/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C1170T C8782T T9477A C14805T G25979T C26681T T28144C C28657T C28863T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548160
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-2825/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T C15324T A23403G C27741T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548161
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-2895/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T A518G C3037T C8293T C14408T T18488C A23403G T24739C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548162
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-2956/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T G18596T T19839C A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548165
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-3187/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T C18060T A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548166
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-3276/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A20268G A23403G A24121G C28854T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548168
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-3496/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T A5855G C14408T T19839C A23403G C28512T GGG28881AAC G29751A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548170
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-3674/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1917T C3037T C14408T C15324T A23403G C28708T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548172
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-3780/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C313T C3037T C14408T A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548173
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-5671/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T C15324T A23403G G28881T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548174
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-6128/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1218T C3037T C8293T C14408T C17676T T18488C A23403G T24739C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548175
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-6350/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G13627T C14408T T19839C A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548177
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-6477/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T C15324T A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548178
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-6699/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T C15324T A23403G G25767T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548179
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-6763/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T C15324T A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548180
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-6852/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A20268G A23403G C28854T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548181
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-6928/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548182
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-6955/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G11083T C14408T A23403G G25429T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548183
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-7014/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548184
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-7058/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T C15324T A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548185
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-7072/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C8293T C14408T T18488C A23403G T24739C A26530G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548186
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-7201/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T C3037T C5348T C14408T A23403G G25563T G25839T C28528T G29734C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548187
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-7230/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T T19839C A23403G GGG28881AAC G29751A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548188
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-7310/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T G1634A C3037T C14408T A20268G A23403G C28854T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548189
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-7313/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C8293T C14408T T18488C A23403G T24739C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548190
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-7347/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T T19839C A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548191
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-7405/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548192
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-7419/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T C15324T A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548193
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-7474/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T C15324T A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548194
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-7517/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C8293T C14408T T18488C A23403G T24739C A26530G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548195
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-7536/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C8293T C14408T T18488C A23403G T24739C A26530G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548196
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-7548/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C2416T C3037T C14408T A23403G A24423T G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548197
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-7582/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T C15324T A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548198
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-7699/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548199
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-7725/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548201
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-7799/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A1515G C9223T G11083T G12565T C14805T T17247C A23913T G26144T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548202
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-7808/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548204
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-7836/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548205
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-7891/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T C15324T A23403G C25433T C29546T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548206
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-7895/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G11083T C14805T T17247C G26144T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548207
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-7899/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T T3466C C6781T A7981G C13862T C14408T C15352T A23403G C28836T G29229A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548208
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-7906/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C2416T C3037T C14408T A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548209
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-7918/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T C15324T A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548210
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-7927/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G G25429T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548211
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-7960/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T A5855G C14408T T19839C A23403G GGG28881AAC G29751A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548212
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-7986/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A20268G A23403G C28854T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548213
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-8073/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T T19839C A23403G GGG28881AAC G29751A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548214
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-8083/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T C15324T A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548215
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-8099/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T T19839C A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548216
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-8123/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A20268G A23403G A24121G C28854T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548218
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-8226/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548220
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-8290/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T T19839C A23403G GGG28881AAC G29751A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548221
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-8298/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T A518G C3037T C8293T C14408T T18488C A23403G T24739C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548222
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-8301/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T C15324T A23403G C25433T C29546T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548223
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-8323/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548225
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-8420/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C8293T C14408T T18488C A23403G T24739C C28849A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548226
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-8431/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G3122T C14408T C15324T A23403G G28881T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548228
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-8452/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A20268G A23403G C28854T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_548229
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-8508/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T C15324T A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548230
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-8715/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T C15324T A23403G C25433T C29546T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548231
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-8721/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C934T C3037T C10138T C14408T A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548232
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-8820/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C5239T C14408T C15324T A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548233
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-8927/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G C26907T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548234
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-8936/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T C3037T C4320T C7843T C14408T C16985T A23403G G25563T C25688T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548235
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-9034/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A20268G A23403G C28854T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548237
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-9136/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T C15324T A23403G AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_548238
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-9173/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G7798T C14408T A20268G A23403G C28854T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548240
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-9980/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548242
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/VS-SNRCI-5838/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T C15324T A23403G G28881T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548762
 2020-03-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-00169/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T G11828T C14408T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_548763
 2020-03-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-00170/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C1059T C3037T C14408T A23403G G25563T GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_548764
 2020-03-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-00171/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T G11828K C14408T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_548765
 2020-03-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-00172/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C14408T A23403G G25563T G25599K CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_548767
 2020-03-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-00174/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C1059T C3037T C14408T A23403G G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_548768
 2020-03-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-00233/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T G21624R A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_548769
 2020-03-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-00234/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C1059T C3037T C14408T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_548770
 2020-03-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-00235/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_548771
 2020-03-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-00236/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T C1059T T1675C C3037T C14408T A23403G G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_548772
 2020-03-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-00237/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T A1486R C3037T G11828K C14408T A23403G C25366Y G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_548773
 2020-03-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-00238/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T C21110T A23403G G25563T C25886T G28899A AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_548774
 2020-03-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-00320/2020
 ATTAAAGGTTTA1- C241T C1059T C3037T C14408T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_548775
 2020-03-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-00384/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C14408T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_548777
 2020-03-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-00386/2020
 ATTAAAGGTTTATA1- C241T C1059T C3037T C14408T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_548778
 2020-03-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-00397/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_548780
 2020-03-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-00987/2020
 ATTAAAGGTTTA1- C241T C1059T C3037T C14408T A23403G G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_548932
 2020-03-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-90069/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T G11828T C14408T A23403G G25563T G28903K AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_548933
 2020-03-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-90070/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_548934
 2020-03-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-90084/2020
 ATTAAAGGTT1- C241T C1059T C3037T C14408T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_548935
 2020-03-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-90085/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_548940
 2020-03-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-90107/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T G11828T C14408T A23403G G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_548941
 2020-03-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-90108/2020
 ATTAAAGGTTTATA1- C241T C1059T A1856G C3037T C14408T A23403G G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

LC542809
 2020-03-xx 2020-04-18
 Japan TKYE6947_2020
 G11083T C14408T C26111T C29635T

MT320538
 2020-03-xx 2020-04-09
 France SARS-CoV-2/human/FRA/KRA-ROB/2020
 C241T A618G C3037T C14408T C15324T A23403G AAAAAAAAAAAAAAAAAAAAA29883-

MT322396
 2020-03-xx 2020-04-08
 United States SARS-CoV-2/human/USA/VA-DCLS-0003/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C3589T C8782T C13138T C17747T A17858G C18060T T28144C C29870A

MT322397
 2020-03-xx 2020-04-08
 United States SARS-CoV-2/human/USA/VA-DCLS-0004/2020
 ATTAAAGGTT1- C3589T C8782T C17747T A17858G C18060T T28144C

MT325571
 2020-03-xx 2020-04-10
 United States SARS-CoV-2/human/USA/GA_2055/2020
 T490A C3177T C8782T C11824T T18736C C24034T T26729C G28077C T28144C A29700G AAAAAAAAAAAAAAAAAAAAA29883-

MT325573
 2020-03-xx 2020-04-10
 United States SARS-CoV-2/human/USA/GA_2120/2020
 T490A C3177T C8782T T18736C C24034T T26729C C27635Y T27698G G28077C C28093Y T28144C A29700G AAAAAAAAAAAAAAAAAAAAA29883-

MT325574
 2020-03-xx 2020-04-10
 United States SARS-CoV-2/human/USA/GA_2185/2020
 C8782T C16466Y C17747T A17858G C18060T GG18505RK T28144C AAAAAAAAAAAAAAAAAAAAA29883-

MT621560
 2020-03-xx 2020-06-15
 China SARS-CoV-2/human/HKG/HKU_HK/2020
 C1663T C8782T A18314G G22661T CTAATTCTCCTCGGCGGGCACGTAGTGTAG23595- C24034T T26729C G28077C T28144C C29051G

MT951944
 2020-03-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0575/2020
 ATTA1- C241T C3037T C13335T C14408T A23403G C29002T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

MT951945
 2020-03-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0577/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2416T C3037T G4523A C10712T C14408T A23403G G25563T G29868R C29870A

MT951946
 2020-03-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0578/2020
 C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T

MT951947
 2020-03-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0579/2020
 ATTAAAGGTTTA1- G1440A G2891A A6944G C9430T A29871R AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

MT951948
 2020-03-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0580/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T G5542C C14408T A23403G G26063T C27046T GGG28881AAC A29871R AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

MT951949
 2020-03-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0581/2020
 AT1- C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

MT951950
 2020-03-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0582/2020
 ATTA1- C241T C1059T C3037T C10156T C14408T A23403G G25563T

MT951951
 2020-03-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0583/2020
 C1912T C2676T C8782T A22606T T24725G T28144C G28878A G29742A A29874T AAAAAAAAAAAAAAAAAAAAA29883-

MT951952
 2020-03-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0584/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C14408T A23403G T27299C GGG28881AAC T29148C C29870A

MT951953
 2020-03-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0585/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G204T C241T C1059T C3037T G8676T C14408T C20104T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

MT951955
 2020-03-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0588/2020
 A1- C241T C1059T C3037T C14408T A23403G G25563T

MT951956
 2020-03-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0589/2020
 ATTAA1- C241T C1059T A2380G C3037T C6310T C14408T C14925T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT951957
 2020-03-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0590/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T G8201A C12115T C14408T A23403G G25563T G29868A C29870A

MT951958
 2020-03-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0591/2020
 AT1- T490A C3177T C6040T C8782T G12478A T18736C C24034T T26729C G28077C T28144C C28896G A29700G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

MT951959
 2020-03-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0592/2020
 ATTAAAGGTTT1- C241T C1059T A2380G C3037T C14408T C14925T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAA29879-

MT951960
 2020-03-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0593/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C2416T C3037T C10712T C14408T A23403G T25304C G25563T C28890T

MT951962
 2020-03-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0595/2020
 AT1- T490A C3177T C6040T C8357T C8782T C8950T G12478A T18736C C24034T T26729C G28077C T28144C C28896G C29451T A29700G C29870A

MT951963
 2020-03-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0596/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1473T C2416T C3037T T5338C C10712T C14408T A23403G G25563T C29870A

MT951964
 2020-03-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0599/2020
 ATTAAAGGTTTATACCTTCCC1- C241T C1059T C3037T C14408T A23403G G25563T

MT951965
 2020-03-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0600/2020
 AT1- C241T C2416T C3037T G4523A A10323G C10712T C14408T A23403G G25563T

MT951966
 2020-03-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0602/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C8782T G16917T C17747T A17858G C18060T A24694T C26256T T28144C TCACCGAGGCCACGCGGAG29729-

MT951967
 2020-03-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0603/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- A38G C241T C1059T C3037T C14408T A23403G G25563T

MT951968
 2020-03-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0605/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T1918C C3037T C14408T C18877T A23403G G25563T G25906T

MT951969
 2020-03-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0606/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C2416T C3037T C3140T T5338C C10712T C14408T A23403G G25563T

MT951970
 2020-03-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0607/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C1059T C3037T C14408T A23403G G25563T

MT951971
 2020-03-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0608/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C3037T A8633G C14408T A23403G G25563T G29736T C29870A

MT951972
 2020-03-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0609/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T A652T C1059T C3037T C14408T A23403G G25563T C27688T AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_420144
 2020-04-01 2020-04-05
 Georgia hCoV-19/Georgia/Tb-1679/2020
 ATT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421574
 2020-04-01 2020-04-09
 South Africa hCoV-19/South Africa/KRISP-07/2020
 C241T C3037T C14408T C16376T A23403G

EPI_ISL_421575
 2020-04-01 2020-04-09
 South Africa hCoV-19/South Africa/KRISP-011/2020
 C241T C3037T C14408T C16376T A23403G

EPI_ISL_421660
 2020-04-01 2020-04-09
 United States hCoV-19/USA/OH-OSUP0109/2020
 TTAAAGGTTTATACCTTCCCAGGT2- C241T C3037T C11960A C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_421675
 2020-04-01 2020-04-09
 United States hCoV-19/USA/OH-OSUP0112/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T AAGTCATTT686- C1059T G2808A C3037T C14408T A23403G G25563T A26433G T29859G AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_421939
 2020-04-01 2020-04-09
 United Kingdom hCoV-19/England/20144018704/2020
 G11083T C14805T T16906C A17066W T17247C T22389Y G26144T

EPI_ISL_421964
 2020-04-01 2020-04-09
 United Kingdom hCoV-19/England/20144076304/2020
 C241T C3037T C13730T C14408T G19677K A23403G G25429T

EPI_ISL_421982
 2020-04-01 2020-04-09
 United Kingdom hCoV-19/England/20146019704/2020
 C241T C3037T A10948G C14408T A23403G C27542T GGG28881AAC

EPI_ISL_422600 LR878030
 2020-04-01 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_291/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2113T C3037T C7765T A12121G C14408T C17690T C18877T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422601 LR878032
 2020-04-01 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_292/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11596T C14408T G20568A A23403G A26530G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422602 LR878039
 2020-04-01 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_293/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G20275A A23403G T26732C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422603 LR878042
 2020-04-01 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_294/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T1570C G11083T C14805T T17247C G26144T C29459T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422604 LR878047
 2020-04-01 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_295/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T1570C G11083T C14805T T17247C G26144T C29459T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422605 LR878044
 2020-04-01 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_296/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18788T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422606 LR878046
 2020-04-01 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_297/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T C17125T T17247C G26144T G27201T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422607 LR878038
 2020-04-01 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_298/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T1570C G11083T C14805T T17247C G26144T C29459T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422608 LR878045
 2020-04-01 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_299/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G19677T A23403G T25068C GGG28881AAC G29179T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422609 LR878040
 2020-04-01 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_300/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C7173T C14408T G20134T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422610 LR878043
 2020-04-01 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_301/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C8293A C11109T C14408T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422611 LR878041
 2020-04-01 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_302/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3058G C14408T G20275A A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422612 LR878050
 2020-04-01 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_303/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1820A C3037T T10561C C14408T C15324T A23403G C28844T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422615 LR878052
 2020-04-01 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_306/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1997T C3037T C14408T A23403G G29422T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_423559
 2020-04-01 2020-04-12
 United Kingdom hCoV-19/England/20144071504/2020
 A2480G C2558T C9438Y G11083T C14805T C17304T C23638Y T25228C G26144T

EPI_ISL_423570
 2020-04-01 2020-04-12
 United Kingdom hCoV-19/England/20144076204/2020
 C241T C3037T C13730T C14408T G16975K A23403G G25429T

EPI_ISL_423573
 2020-04-01 2020-04-12
 United Kingdom hCoV-19/England/20146004804/2020
 C241T C3037T C8025T C14408T A20268G G22104T A23403G G29734C

EPI_ISL_423574
 2020-04-01 2020-04-12
 United Kingdom hCoV-19/England/20146005804/2020
 ATG1605-

EPI_ISL_424930
 2020-04-01 2020-04-14
 United States hCoV-19/USA/NY-NYUMC123/2020
 C241T C1059T C1917T C3037T T6703C G10981T C14408T G20005A A23403G G25563T

EPI_ISL_424931
 2020-04-01 2020-04-14
 United States hCoV-19/USA/NY-NYUMC124/2020
 C241T C1059T C1917T C3037T T6703C G10981T C14408T G20005A A23403G G25563T

EPI_ISL_424932
 2020-04-01 2020-04-14
 United States hCoV-19/USA/NY-NYUMC125/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_424933
 2020-04-01 2020-04-14
 United States hCoV-19/USA/NY-NYUMC126/2020
 C241T C3037T C14408T C21575T A23403G GGG28881AAC

EPI_ISL_424934
 2020-04-01 2020-04-14
 United States hCoV-19/USA/NY-NYUMC127/2020
 C241T C1059T G1181T C3037T C11916T C14408T C18998T A23403G G25563T G29540A A29776G A29782G T29845C

EPI_ISL_424935
 2020-04-01 2020-04-14
 United States hCoV-19/USA/NY-NYUMC128/2020
 C241T C1059T C3037T C8118T C11916T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_424936
 2020-04-01 2020-04-14
 United States hCoV-19/USA/NY-NYUMC129/2020
 C241T C1059T C3037T C11916T T13212A C14408T C18998T A23403G G25563T G29540A

EPI_ISL_424937
 2020-04-01 2020-04-14
 United States hCoV-19/USA/NY-NYUMC130/2020
 C241T C1059T C3037T C14408T G14792T C15763T A23403G G25563T

EPI_ISL_424938
 2020-04-01 2020-04-14
 United States hCoV-19/USA/NY-NYUMC131/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_424939
 2020-04-01 2020-04-14
 United States hCoV-19/USA/NY-NYUMC132/2020
 C241T C1059T C3037T C10851T C14408T A23403G G25563T

EPI_ISL_424940
 2020-04-01 2020-04-14
 United States hCoV-19/USA/NY-NYUMC133/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T

EPI_ISL_424941
 2020-04-01 2020-04-14
 United States hCoV-19/USA/NY-NYUMC134/2020
 C241T C1059T C3037T C5497T C14408T A23403G G25218T G25563T

EPI_ISL_424942
 2020-04-01 2020-04-14
 United States hCoV-19/USA/NY-NYUMC135/2020
 C241T C1059T C3037T C11916T C14408T T17661C A23403G C25487T G25563T C28728T

EPI_ISL_424943
 2020-04-01 2020-04-14
 United States hCoV-19/USA/NY-NYUMC136/2020
 C241T C1059T C3037T C5886T A9372G C11916T C14408T C18998T A20553G A23403G G25563T G29540A

EPI_ISL_424944
 2020-04-01 2020-04-14
 United States hCoV-19/USA/NY-NYUMC137/2020
 C241T G677A C1059T C3037T C14408T A23403G G25563T G25855T

EPI_ISL_424946
 2020-04-01 2020-04-14
 United States hCoV-19/USA/NY-NYUMC139/2020
 C241T C1059T C3037T C11916T C14408T C14931T C18998T A23403G G25563T G29540A

EPI_ISL_424947
 2020-04-01 2020-04-14
 United States hCoV-19/USA/NY-NYUMC140/2020
 C241T C3037T C14408T G18318A C18877T A23403G G25563T

EPI_ISL_424948
 2020-04-01 2020-04-14
 United States hCoV-19/USA/NY-NYUMC141/2020
 C241T C1059T C3037T A5637G C11916T C14408T C17118T A23403G G25563T

EPI_ISL_424949
 2020-04-01 2020-04-14
 United States hCoV-19/USA/NY-NYUMC142/2020
 C241T C1059T C3037T C11916T C14408T C18998T A23403G C25169T G25563T G29540A

EPI_ISL_424950
 2020-04-01 2020-04-14
 United States hCoV-19/USA/NY-NYUMC143/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_424951
 2020-04-01 2020-04-14
 United States hCoV-19/USA/NY-NYUMC144/2020
 C241T C1059T C3037T A3546T C11916T C14408T C18998T A23403G G25563T G29239A G29477T G29540A

EPI_ISL_424952
 2020-04-01 2020-04-14
 United States hCoV-19/USA/NY-NYUMC145/2020
 C241T C1059T C3037T C14408T TTT21990- A23403G G25563T

EPI_ISL_424953
 2020-04-01 2020-04-14
 United States hCoV-19/USA/NY-NYUMC146/2020
 C241T C1059T C3037T C4113T C11916T C14408T C18998T G20342A A23403G G25563T G29540A

EPI_ISL_424954
 2020-04-01 2020-04-14
 United States hCoV-19/USA/NY-NYUMC147/2020
 C241T C1059T C3037T C14408T G14580T C22096T A23403G G25563T

EPI_ISL_424955
 2020-04-01 2020-04-14
 United States hCoV-19/USA/NY-NYUMC148/2020
 C241T C1059T C3037T C3924T C14408T G18090A A23403G G25563T G29179T

EPI_ISL_424957
 2020-04-01 2020-04-14
 United States hCoV-19/USA/NY-NYUMC150/2020
 C241T C3037T C14408T G15543T A23403G C25317T GGG28881AAC C29370T

EPI_ISL_424958
 2020-04-01 2020-04-14
 United States hCoV-19/USA/NY-NYUMC151/2020
 C241T C1059T C3037T C11916T C14408T C14925T C18998T A23403G G25563T G29540A

EPI_ISL_424959
 2020-04-01 2020-04-14
 United States hCoV-19/USA/NY-NYUMC152/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_424962
 2020-04-01 2020-04-14
 United States hCoV-19/USA/NY-NYUMC155/2020
 C241T C1059T C3037T A6707G C11916T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_424963
 2020-04-01 2020-04-14
 United States hCoV-19/USA/NY-NYUMC156/2020
 C241T C3037T C6543T C14408T C18877T A23403G G25563T

EPI_ISL_424964
 2020-04-01 2020-04-14
 United States hCoV-19/USA/NY-NYUMC157/2020
 C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T A27363C C27807T G29540A

EPI_ISL_424965
 2020-04-01 2020-04-14
 United States hCoV-19/USA/NY-NYUMC158/2020
 C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_424966
 2020-04-01 2020-04-14
 United States hCoV-19/USA/NY-NYUMC159/2020
 C241T C3037T C14408T C18877T A23403G G25563T

EPI_ISL_424968
 2020-04-01 2020-04-14
 United States hCoV-19/USA/NY-NYUMC161/2020
 C241T C1059T C3037T C14408T A23403G C23525T G25563T

EPI_ISL_425153
 2020-04-01 2020-04-14
 United States hCoV-19/USA/WI-UW-96/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C829T G6454T C8782T G16381A C16428T T17877C C20316T G25500T C26124T T28144C G28878A G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425243
 2020-04-01 2020-04-14
 United Kingdom hCoV-19/England/CAMB-73800/2020
 C241T C3037T G5425T C14408T A23403G G23610A C25350T

EPI_ISL_425244
 2020-04-01 2020-04-14
 United Kingdom hCoV-19/England/CAMB-7381F/2020
 C241T C3037T C14408T C16289T A23403G A23801G G25429T G29711C

EPI_ISL_425263
 2020-04-01 2020-04-14
 United Kingdom hCoV-19/England/CAMB-739D0/2020
 C241T C1059T C3037T C9286T C14408T A23403G G25563T G28899C

EPI_ISL_425267
 2020-04-01 2020-04-14
 United Kingdom hCoV-19/England/CAMB-73A19/2020
 A2480G C2558T G7393T G11083T C14805T C21639T G26144T

EPI_ISL_425268
 2020-04-01 2020-04-14
 United Kingdom hCoV-19/England/CAMB-73A28/2020
 C241T C3037T T4591C C14408T T19839C A23403G GGG28881AAC

EPI_ISL_425435
 2020-04-01 2020-04-14
 United Kingdom hCoV-19/England/CAMB-76E92/2020
 C241T C3037T C14408T T17835C A23403G

EPI_ISL_425436
 2020-04-01 2020-04-14
 United Kingdom hCoV-19/England/CAMB-76EB0/2020
 A2480G C2558T A10323G G11083T C14805T C18652T G26144T G26529T A27809T

EPI_ISL_425443
 2020-04-01 2020-04-14
 United Kingdom hCoV-19/England/CAMB-76F9F/2020
 C241T C1684T C3037T C4002T G10097A C13536T C14184T C14408T C21058T A23403G C23731T GGG28881AAC

EPI_ISL_425446
 2020-04-01 2020-04-14
 United Kingdom hCoV-19/England/CAMB-76FCC/2020
 C241T C3037T T7020C C14408T A23403G GGG28881AAC

EPI_ISL_425449
 2020-04-01 2020-04-14
 United Kingdom hCoV-19/England/CAMB-76FF9/2020
 C241T G2144T C3037T C14408T A23403G C25350T

EPI_ISL_425451
 2020-04-01 2020-04-14
 United Kingdom hCoV-19/England/CAMB-77013/2020
 C1314T G11083T C11575T C14805T T17247C G26144T T28852C

EPI_ISL_425453
 2020-04-01 2020-04-14
 United Kingdom hCoV-19/England/CAMB-77031/2020
 C241T C3037T C3373A C3923A C11195T C14408T A23403G GGG28881AAC

EPI_ISL_425457
 2020-04-01 2020-04-14
 United Kingdom hCoV-19/England/CAMB-7707D/2020
 G11083T C14422T C14805T C23707T G26144T G26779T G29140C

EPI_ISL_426013
 2020-04-01 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB530/2020
 C988T T2981C G11083T C14805T T17247C G26144T C29585T

EPI_ISL_426014
 2020-04-01 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB533/2020
 C988T G11083T C14805T T17247C G26144T C26735T C29585T

EPI_ISL_426020
 2020-04-01 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB561/2020
 C241T C313T C3037T T3268C C14408T A23403G GGG28881AAC

EPI_ISL_426021
 2020-04-01 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB562/2020
 C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_426464 MT350246
 2020-04-01 2020-04-17
 United States SARS-CoV-2/human/USA/VA-DCLS-0056/2020
 ATTAAA1- C6027T A10236G G11083T C14805T T17247C T23599C G26144T C26351T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_426556
 2020-04-01 2020-04-17
 United States hCoV-19/USA/AZ-TG272213/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426557
 2020-04-01 2020-04-17
 United States hCoV-19/USA/AZ-TG272215/2020
 C241T C1059T T1211G C3037T C5301T C14408T A23403G G25563T C27937T C27964T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426564
 2020-04-01 2020-04-17
 United States hCoV-19/USA/AZ-TG273304/2020
 C241T C3037T T3982C C9534A C14408T C18877T A23403G G25563T G29742A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426565
 2020-04-01 2020-04-17
 United States hCoV-19/USA/AZ-TG273308/2020
 C241T C1059T C3037T C14408T A14747G C16658T A20755C A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426566
 2020-04-01 2020-04-17
 United States hCoV-19/USA/AZ-TG273310/2020
 C241T C1059T C3037T C14408T A14747G C16658T A20755C T21872A T21891A A23403G C24374T G25563T C27131T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426567
 2020-04-01 2020-04-17
 United States hCoV-19/USA/AZ-TG273314/2020
 C241T C1059T C3037T C14408T A14747G C16658T A20755C A23403G G25563T A29872G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426617
 2020-04-01 2020-04-17
 United States hCoV-19/USA/NY-NYUMC162/2020
 C241T C1059T C3037T A3416C C14408T A23403G G25563T

EPI_ISL_426618
 2020-04-01 2020-04-17
 United States hCoV-19/USA/NY-NYUMC163/2020
 C241T C1059T C3037T C4113T C11916T C14408T C17550T C18998T A23403G G25563T G29540A

EPI_ISL_426619
 2020-04-01 2020-04-17
 United States hCoV-19/USA/NY-NYUMC164/2020
 C241T C1059T C3037T C14408T A23403G G25563T T26171A

EPI_ISL_426620
 2020-04-01 2020-04-17
 United States hCoV-19/USA/NY-NYUMC165/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_426621
 2020-04-01 2020-04-17
 United States hCoV-19/USA/NY-NYUMC166/2020
 C241T C1059T C3037T G10261T C11916T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_426622
 2020-04-01 2020-04-17
 United States hCoV-19/USA/NY-NYUMC167/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_426623
 2020-04-01 2020-04-17
 United States hCoV-19/USA/NY-NYUMC168/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_426624
 2020-04-01 2020-04-17
 United States hCoV-19/USA/NY-NYUMC169/2020
 C241T T1918C C3037T C14408T C18877T A23403G G25563T

EPI_ISL_426625
 2020-04-01 2020-04-17
 United States hCoV-19/USA/NY-NYUMC170/2020
 C241T C1059T C3037T A5914G C14408T A20755C A23403G G25563T

EPI_ISL_426626
 2020-04-01 2020-04-17
 United States hCoV-19/USA/NY-NYUMC171/2020
 C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T C28724T GGG28881AAC

EPI_ISL_427238 MT358743
 2020-04-01 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-4068/2020
 ATTAAAGGTTTATACCTTC1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAA29897-

EPI_ISL_427239 MT358744
 2020-04-01 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-4082/2020
 ATTAAA1- GG7AV C241T C1059T C3037T C6312T T13932C C14408T T21146A G21151T A23403G G25563T G29553A

EPI_ISL_427245 MT358644
 2020-04-01 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-4180/2020
 ATTAAAGGTTTATACCTTCCCAGG1- A31T AAC34TTT C241T C1059T C3037T C12102T C14408T A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_427469
 2020-04-01 2020-04-18
 United States hCoV-19/USA/NY-NYUMC172/2020
 C241T C3037T C12747T C14408T A23403G A25505C GGG28881AAC

EPI_ISL_427470
 2020-04-01 2020-04-18
 United States hCoV-19/USA/NY-NYUMC173/2020
 T13C C241T C1059T C3037T C8078T C14408T T19521C A23403G G25563T A28615G

EPI_ISL_427471
 2020-04-01 2020-04-18
 United States hCoV-19/USA/NY-NYUMC174/2020
 C241T C3037T C14408T C18877T A23403G G25563T C28866T

EPI_ISL_427472
 2020-04-01 2020-04-18
 United States hCoV-19/USA/NY-NYUMC175/2020
 C241T C1059T C3037T C10851T C14408T A23403G C24964T G25563T

EPI_ISL_427473
 2020-04-01 2020-04-18
 United States hCoV-19/USA/NY-NYUMC177/2020
 C241T C3037T G12038A C14408T C18877T A23403G G25563T G26763T

EPI_ISL_427474
 2020-04-01 2020-04-18
 United States hCoV-19/USA/NY-NYUMC178/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_427475
 2020-04-01 2020-04-18
 United States hCoV-19/USA/NY-NYUMC179/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_427476
 2020-04-01 2020-04-18
 United States hCoV-19/USA/NY-NYUMC180/2020
 C241T C1059T C3037T C14408T C17518T A23403G G25563T

EPI_ISL_427477
 2020-04-01 2020-04-18
 United States hCoV-19/USA/NY-NYUMC181/2020
 C241T C3037T C14408T A23403G G25563T

EPI_ISL_427478
 2020-04-01 2020-04-18
 United States hCoV-19/USA/NY-NYUMC182/2020
 C241T C1437T C3037T C14408T C18877T A23403G G25563T C25584T

EPI_ISL_427479
 2020-04-01 2020-04-18
 United States hCoV-19/USA/NY-NYUMC183/2020
 C241T C1059T C3037T C14408T A23403G G25563T C26625T

EPI_ISL_427480
 2020-04-01 2020-04-18
 United States hCoV-19/USA/NY-NYUMC184/2020
 C241T C1059T C3037T C11916T G12545A C14408T C18998T A23403G G25563T G29540A

EPI_ISL_427481
 2020-04-01 2020-04-18
 United States hCoV-19/USA/NY-NYUMC185/2020
 C241T C1059T G2075A C3037T G12131A C14408T A23403G G25563T

EPI_ISL_427482
 2020-04-01 2020-04-18
 United States hCoV-19/USA/NY-NYUMC186/2020
 C241T C1059T G2635A C3037T C10341T C11916T C14408T C18998T C19884T T22441C A23403G G25563T G29540A

EPI_ISL_427484
 2020-04-01 2020-04-18
 United States hCoV-19/USA/NY-NYUMC188/2020
 C8078T G10754A G11083T C14805T T17247C A25656G G26144T

EPI_ISL_427485
 2020-04-01 2020-04-18
 United States hCoV-19/USA/NY-NYUMC189/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_427487
 2020-04-01 2020-04-18
 United States hCoV-19/USA/NY-NYUMC192/2020
 C241T C1059T C3037T C14408T A23403G G25563T C26625T C26895T A27983T

EPI_ISL_427488
 2020-04-01 2020-04-18
 United States hCoV-19/USA/NY-NYUMC193/2020
 C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29402T G29540A

EPI_ISL_427489
 2020-04-01 2020-04-18
 United States hCoV-19/USA/NY-NYUMC194/2020
 C241T C1059T C3037T C5842T C14408T G15438T A23403G G25563T

EPI_ISL_427490
 2020-04-01 2020-04-18
 United States hCoV-19/USA/NY-NYUMC195/2020
 C241T C1059T C3037T G6536T C13255T C14408T C21736T A23403G G25563T

EPI_ISL_427491
 2020-04-01 2020-04-18
 United States hCoV-19/USA/NY-NYUMC196/2020
 C241T C1059T C3037T C14408T C21552T A23403G G25563T

EPI_ISL_427492
 2020-04-01 2020-04-18
 United States hCoV-19/USA/NY-NYUMC197/2020
 C241T C1059T C3037T C9264T C14408T A23403G G25563T

EPI_ISL_427493
 2020-04-01 2020-04-18
 United States hCoV-19/USA/NY-NYUMC198/2020
 C241T C1059T C3037T C14408T C18364T A23403G G25563T

EPI_ISL_427494
 2020-04-01 2020-04-18
 United States hCoV-19/USA/NY-NYUMC199/2020
 C241T C539T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_427495
 2020-04-01 2020-04-18
 United States hCoV-19/USA/NY-NYUMC200/2020
 C241T C3037T C14408T C18877T A23403G G25563T TA29760-

EPI_ISL_427498
 2020-04-01 2020-04-18
 United States hCoV-19/USA/NY-NYUMC203/2020
 C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T T28105C G29540A

EPI_ISL_427524
 2020-04-01 2020-04-19
 United States hCoV-19/USA/NY-NYUMC176/2020
 C8078T G11083T C14805T T17247C G26144T T28251G CA28253TC

EPI_ISL_427627
 2020-04-01 2020-04-19
 United States hCoV-19/USA/NY-NYUMC227/2020
 C241T C1059T C3037T C5812T C14408T C22388T A23403G G25563T

EPI_ISL_428728
 2020-04-01 2020-04-21
 United States hCoV-19/USA/WI-UW-254/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C3811T G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428878
 2020-04-01 2020-04-22
 Russia hCoV-19/Russia/Omsk-89001/2020
 C241T C3037T C14408T A20268G A23403G

EPI_ISL_428907
 2020-04-01 2020-04-22
 Russia hCoV-19/Russia/Sakha-89702/2020
 C241T C3037T C14408T A23403G A26650G GGG28881AAC

EPI_ISL_428911
 2020-04-01 2020-04-22
 Russia hCoV-19/Russia/Buryatia-88903/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_428943
 2020-04-01 2020-04-22
 Luxembourg hCoV-19/Luxembourg/LNS6969569/2020
 A187G C241T C3037T C14408T G17014T A23403G C27727T AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_428944
 2020-04-01 2020-04-22
 Luxembourg hCoV-19/Luxembourg/LNS1387711/2020
 C241T A618G C3037T A7770G C14408T C15324T A23403G C26499G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_428956
 2020-04-01 2020-04-22
 Luxembourg hCoV-19/Luxembourg/LNS6854244/2020
 A187G C241T C3037T C14408T G17014T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_428959
 2020-04-01 2020-04-22
 Luxembourg hCoV-19/Luxembourg/LNS4295690/2020
 G1440A C1593T G2891A C25721T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_429722
 2020-04-01 2020-04-24
 Luxembourg hCoV-19/Luxembourg/LNS6137379/2020
 C241T C1059T C3037T C14408T C16750T A23403G G25563T G29705T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_429989 MT415912
 2020-04-01 2020-04-24
 United States SARS-CoV-2/human/USA/VA-DCLS-0092/2020
 ATTAAAGGTT1- C241T C1059T C3037T G14118T C14408T A23403G G25563T C29870A

EPI_ISL_430130 MT627631
 2020-04-01 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S276/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_430147 MT627622
 2020-04-01 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S293/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_430352
 2020-04-01 2020-04-26
 United States hCoV-19/USA/NY-NYUMC325/2020
 C241T C3037T T6691C C14408T C18877T A23403G G25563T G26730T G27948T

EPI_ISL_430353
 2020-04-01 2020-04-26
 United States hCoV-19/USA/NY-NYUMC326/2020
 C241T C1059T C1917T C3037T C4898T C11442T G14118A C14408T G22225T A23403G G25563T G27441T

EPI_ISL_430547 MT451692
 2020-04-01 2020-04-27
 Australia SARS-CoV-2/human/AUS/VIC1011/2020
 C241T C2937T C3037T C14408T C19402Y A20268G A23403G C24096Y C28887Y

EPI_ISL_430803
 2020-04-01 2020-04-27
 Argentina hCoV-19/Argentina/PAIS_A012/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATC1- C241T C3037T C12213T C14408T A20268G C22088T A23403G C25463Y AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_430804
 2020-04-01 2020-04-27
 Argentina hCoV-19/Argentina/PAIS_A013/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGA1- C241T C3037T C14408T A20268G A23403G TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_430805
 2020-04-01 2020-04-27
 Argentina hCoV-19/Argentina/PAIS_A014/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATC1- C241T C1473T C3037T C14408T C16869T A23403G GGG28881AAC G29473A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_430869 MT412226
 2020-04-01 2020-04-28
 United States SARS-CoV-2/human/USA/WA-UW-5178/2020
 A1- C241T C1059T C3037T A6729C C14408T A23403G G25563T G29553A

EPI_ISL_430873 MT412229
 2020-04-01 2020-04-28
 United States SARS-CoV-2/human/USA/WA-UW-5189/2020
 ATTAAAGGTTTA1- C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_430874 MT412230
 2020-04-01 2020-04-28
 United States SARS-CoV-2/human/USA/WA-UW-5190/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C1059T C3037T G4975T C14408T A23403G G25523T G25563T T27869C TATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29832-

EPI_ISL_430899 MT412256
 2020-04-01 2020-04-28
 United States SARS-CoV-2/human/USA/WA-UW-5203/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C36T C241T C1059T C3037T C14408T A23403G T24565G G25563T G29553A AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_430933 MT412290
 2020-04-01 2020-04-28
 United States SARS-CoV-2/human/USA/WA-UW-6162/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A31T C36T G4148T C8782T C17747T A17858G C18060T TTA21991- T28144C -29904AAAA

EPI_ISL_430936 MT412293
 2020-04-01 2020-04-28
 United States SARS-CoV-2/human/USA/WA-UW-6173/2020
 ATTAAAGG1- A31T A34T C36T C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAA29891-

EPI_ISL_430937 MT412294
 2020-04-01 2020-04-28
 United States SARS-CoV-2/human/USA/WA-UW-6178/2020
 ATTAAAGGT1- A31T C36T C241T G740A G872T C1059T C3037T C12880T C14408T A23403G G25563T G28899C G28985T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_430939 MT412296
 2020-04-01 2020-04-28
 United States SARS-CoV-2/human/USA/WA-UW-4243/2020
 ATTAAAGGTT1- C36T C1469T A6616G G11083T C14805T T17247C G26144T G29254T G29864A TG29867AA C29870A

EPI_ISL_430953 MT412311
 2020-04-01 2020-04-28
 United States SARS-CoV-2/human/USA/WA-UW-6185/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A31W C36T C241T C1059T C3037T C14408T A23403G G25563T G29553A TG29867-A C29870A

EPI_ISL_430954 MT412312
 2020-04-01 2020-04-28
 United States SARS-CoV-2/human/USA/WA-UW-6186/2020
 A1- C36T C8782T C17747T A17858G C18060T T28144C -29904AAAAAAAAAAAA

EPI_ISL_430955 MT412313
 2020-04-01 2020-04-28
 United States SARS-CoV-2/human/USA/WA-UW-6211/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C36T C241T T833C C1059T C3037T C12915T C14408T C20178T A23403G G25563T G25644T C27498T C27964T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_430957 MT412314
 2020-04-01 2020-04-28
 United States SARS-CoV-2/human/USA/WA-UW-6240/2020
 ATTAAA1- C36T C241T C1059T C3037T C14408T A23403G G25563T -29904AAAAAAAAAA

EPI_ISL_430960 MT412317
 2020-04-01 2020-04-28
 United States SARS-CoV-2/human/USA/CT-UW-6259/2020
 ATTAAAGGTT1- C36T C241T C1059T C3037T C14408T C16173T A23403G G25563T AAAAAAAAAAA29893-

EPI_ISL_430961 MT412318
 2020-04-01 2020-04-28
 United States SARS-CoV-2/human/USA/CT-UW-6270/2020
 ATTAAAGGTTTAT1- A14T CCCAGGTAACAAACCAA19- CC36TA C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_430962 MT412319
 2020-04-01 2020-04-28
 United States SARS-CoV-2/human/USA/CT-UW-6271/2020
 AT1- AACC34TTTA C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_430965 MT412322
 2020-04-01 2020-04-28
 United States SARS-CoV-2/human/USA/CT-UW-6314/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCT1- C241T C1059T C3037T C12854T C14408T A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_430968 MT412325
 2020-04-01 2020-04-28
 United States SARS-CoV-2/human/USA/WA-UW-6331/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- AACC34TTTA C241T C1059T C3037T T5485G C14408T A23403G G25563T G29553A -29904AAAAAAAAAAAA

EPI_ISL_430970 MT412327
 2020-04-01 2020-04-28
 United States SARS-CoV-2/human/USA/ID-UW-6349/2020
 A1- A4D C36T C241T T833C C1059T C3037T C11758T C14408T C14786T C15720T G21641T A23403G G25563T C27964T TG29867AA C29870A -29904AAAAAAAAAAAAAAAAAA

EPI_ISL_430972 MT412329
 2020-04-01 2020-04-28
 United States SARS-CoV-2/human/USA/CT-UW-6380/2020
 ATTAAAG1- AAC34TTT C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_430973 MT412330
 2020-04-01 2020-04-28
 United States SARS-CoV-2/human/USA/CT-UW-6385/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C241T GTTATG515- C1059T A2018G C3037T C5622T C14408T T21995C A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_432176
 2020-04-01 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-2771D/2020
 G1440A C1722T G2891A C10401T G28851T

EPI_ISL_432185
 2020-04-01 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-27CA5/2020
 AT1- C241T C3037T C14408T C16289T A23403G G25429T

EPI_ISL_432192
 2020-04-01 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-27CD2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T C6990T G12988T C14408T A23403G C26111T

EPI_ISL_432199
 2020-04-01 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-29F13/2020
 T2K C241T C3037T C5506T G14241T C14408T C19151T A23403G G23612A

EPI_ISL_432210
 2020-04-01 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-277B3/2020
 C241T C3037T C14408T C15720T A23403G

EPI_ISL_432212
 2020-04-01 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-27944/2020
 ATTA1- A34W C193T A2480G C2558T G11083T C14805T G26144T

EPI_ISL_432217
 2020-04-01 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-27A32/2020
 ATTA1- C241T C3037T C4230Y C6990T C8895T C14408T C15857T A23403G G26109T C29200T

EPI_ISL_432221
 2020-04-01 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-27917/2020
 C28T G1820A C4965T G11083T C14805T T17247C G26144T

EPI_ISL_432233
 2020-04-01 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-275D7/2020
 C241T C1059T C3037T C10376T C14408T G18583T A23403G G24368T G25563T G29773T

EPI_ISL_432236
 2020-04-01 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-27D2A/2020
 A1- C241T C3037T C6990T G13975T C14408T C19374Y A23403G G25650T C29200T C29386Y

EPI_ISL_432239
 2020-04-01 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-27D39/2020
 C241T C3037T T5573C G11801A C14408T T19839C A23403G G24586T G25552T GGG28881AAC

EPI_ISL_432240
 2020-04-01 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-27BA8/2020
 C241T C3037T C14408T C19170T G19509A A23403G GGG28881AAC

EPI_ISL_432245
 2020-04-01 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-27A23/2020
 C241T C3037T C6990T C14408T A23403G

EPI_ISL_432256
 2020-04-01 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-275F5/2020
 C241T C3037T T4186C C6027T G11801A C14408T T19839C A23403G G25552T GGG28881AAC

EPI_ISL_432258
 2020-04-01 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-2757D/2020
 A1- C241T C1059T C3037T C14408T C16329T A18639G A23403G C23536T G25563T C25731T C29625T

EPI_ISL_432270
 2020-04-01 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-27935/2020
 AT1- C1346T G11083T G13627T C14805T C15540T C21575T G26144T A28338G

EPI_ISL_432287
 2020-04-01 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-2772C/2020
 A1- C241T C3037T C7945T G11083T C14408T A23403G GGG28881AAC

EPI_ISL_432310
 2020-04-01 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-27BB7/2020
 ATTA1- C241T C3037T C14408T G20176K A23403G GGG28881AAC

EPI_ISL_432316
 2020-04-01 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-274CB/2020
 A1- C241T C3037T G11083T C14408T A23403G A25575C

EPI_ISL_432542
 2020-04-01 2020-04-29
 United Kingdom hCoV-19/England/SHEF-CD315/2020
 ATG1605- G27703T C27752T

EPI_ISL_432579
 2020-04-01 2020-04-29
 United Kingdom hCoV-19/England/SHEF-CED9E/2020
 A2437C A2480G C2558T C6361T G11083T C14805T A15426G G26144T G28347T

EPI_ISL_432614
 2020-04-01 2020-04-29
 United Kingdom hCoV-19/England/SHEF-D0731/2020
 

EPI_ISL_432727
 2020-04-01 2020-04-29
 United Kingdom hCoV-19/England/SHEF-C1645/2020
 C241T C3037T C14408T C21614T A23403G

EPI_ISL_432732
 2020-04-01 2020-04-29
 United Kingdom hCoV-19/England/SHEF-C18E5/2020
 C241T C3037T C14408T C21614T A23403G

EPI_ISL_432744
 2020-04-01 2020-04-29
 United Kingdom hCoV-19/England/SHEF-C2310/2020
 C241T C3037T G11083T C14408T A23403G C25433T C26191T GGG28881AAC

EPI_ISL_432790
 2020-04-01 2020-04-29
 United Kingdom hCoV-19/England/SHEF-C45BE/2020
 C241T C3037T C14408T C21614T A23403G

EPI_ISL_432812
 2020-04-01 2020-04-29
 United Kingdom hCoV-19/England/SHEF-C5D79/2020
 C241T C3037T C14408T C21614T A23403G

EPI_ISL_432825
 2020-04-01 2020-04-29
 United Kingdom hCoV-19/England/SHEF-C6789/2020
 C241T C3037T C14408T C21614T A23403G

EPI_ISL_432859
 2020-04-01 2020-04-29
 United Kingdom hCoV-19/England/SHEF-C81D4/2020
 C241T C958T C3037T C14408T A23403G C27046T GGG28881AAC C29627T

EPI_ISL_432861
 2020-04-01 2020-04-29
 United Kingdom hCoV-19/England/SHEF-C8338/2020
 C2558T G11083T C11902T C14805T G26144T G28851T

EPI_ISL_432979
 2020-04-01 2020-04-29
 United Kingdom hCoV-19/England/NOTT-10F237/2020
 A2480G C2558T G11083T C14805T C25688T G26144T

EPI_ISL_432984
 2020-04-01 2020-04-29
 United Kingdom hCoV-19/England/NOTT-10F282/2020
 C241T C3037T C14408T A23403G C28311T

EPI_ISL_432988
 2020-04-01 2020-04-29
 United Kingdom hCoV-19/England/NOTT-10F2DD/2020
 A8214G A10323G G11083T G13627T C14805T C15540T G26144T A28338G

EPI_ISL_432990
 2020-04-01 2020-04-29
 United Kingdom hCoV-19/England/NOTT-10F2FB/2020
 G3052A C6027T G11083T C14805T C15277T T18771C G26144T

EPI_ISL_432992
 2020-04-01 2020-04-29
 United Kingdom hCoV-19/England/NOTT-10F334/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_433200
 2020-04-01 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB573/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_433207
 2020-04-01 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB589/2020
 C8782T C17470T C26088T T28144C

EPI_ISL_433211
 2020-04-01 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB598/2020
 C241T C3037T C14408T A23403G A24862G C27493T

EPI_ISL_433214
 2020-04-01 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB607/2020
 C3787T C16362T C19763T

EPI_ISL_433218
 2020-04-01 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB625/2020
 C241T C1812T C3037T C11200T C14408T A23403G GGG28881AAC

EPI_ISL_433224
 2020-04-01 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB694/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_433225
 2020-04-01 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB695/2020
 C241T C313T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_433226
 2020-04-01 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB703/2020
 C241T C2862A C3037T C14408T G19677T A23403G GGG28881AAC

EPI_ISL_433227
 2020-04-01 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB707/2020
 C241T C3037T C14408T A23403G C25433T

EPI_ISL_433549
 2020-04-01 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR1351/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T5551C C7423T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_433550
 2020-04-01 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR1352/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C12710T C28854T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_433554
 2020-04-01 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR1361/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C8782T T18736C G19684T C24034T T26729C C26781T C27635T G28077C T28144C A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_433561
 2020-04-01 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR1377/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2196C G11083T C14805T C17172A T17247C C25603T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_433563
 2020-04-01 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR1384/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8626T G11540T C12710T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_433567
 2020-04-01 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR1398/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C5157T C8626T C12710T C17555T T19209C C27213T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_433568
 2020-04-01 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR1400/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1912T C8782T C26088T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_433584
 2020-04-01 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR1432/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A761G C3037T C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_433588
 2020-04-01 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR1443/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25429T A28841G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_433589
 2020-04-01 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR1444/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C8626T C12710T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_433684
 2020-04-01 2020-04-29
 United Kingdom hCoV-19/England/CAMB-73CC8/2020
 C241T C3037T C4582T A12998G C13378T C14408T A23403G GGG28881AAC

EPI_ISL_433688
 2020-04-01 2020-04-29
 United Kingdom hCoV-19/England/CAMB-73D2F/2020
 C241T C3037T C14408T A23403G

EPI_ISL_433689
 2020-04-01 2020-04-29
 United Kingdom hCoV-19/England/CAMB-73D3E/2020
 C241T C3037T C14408T G20134T A23403G GGG28881AAC

EPI_ISL_433691
 2020-04-01 2020-04-29
 United Kingdom hCoV-19/England/CAMB-73D5C/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_433693
 2020-04-01 2020-04-29
 United Kingdom hCoV-19/England/CAMB-73D7A/2020
 C241T C3037T C14408T A23403G G25429T

EPI_ISL_433697
 2020-04-01 2020-04-29
 United Kingdom hCoV-19/England/CAMB-73DB6/2020
 C241T C3037T C3373A C3923A C11195T C14408T A23403G GGG28881AAC

EPI_ISL_433698
 2020-04-01 2020-04-29
 United Kingdom hCoV-19/England/CAMB-73DC5/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_434065 MT632879
 2020-04-01 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S305/2020
 C241T C1059T C3037T C12880T C14408T A23403G G25563T G29553A

EPI_ISL_434070 MT632910
 2020-04-01 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S310/2020
 C3784T C8782T C17747T A17858G C18060T T28144C C29733T

EPI_ISL_434072 MT633037
 2020-04-01 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S312/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434076 MT632914
 2020-04-01 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S316/2020
 C8782T C17747T A17858G C18060T C18264T C24919T T28144C

EPI_ISL_434080 MT632865
 2020-04-01 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S320/2020
 C8782T C17747T A17858G C18060T C18264T C24919T G28077T T28144C

EPI_ISL_434084 MT632859
 2020-04-01 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S324/2020
 G910T C3311A C8782T A17105G G17671T C17747T A17858G C18060T T28144C

EPI_ISL_434086 MT632931
 2020-04-01 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S326/2020
 C8782T C17747T A17858G C18060T C18264T C24919T T28144C

EPI_ISL_434089 MT633010
 2020-04-01 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S329/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434097 MT632950
 2020-04-01 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S337/2020
 G3231T C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434107 MT632836
 2020-04-01 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S347/2020
 C241T C1059T C3037T G7560A C14408T G19999T G21452T A23403G G25563T

EPI_ISL_434108 MT632919
 2020-04-01 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S348/2020
 C8782T C17747T A17858G C18060T A27924G T28144C

EPI_ISL_434200 MT633035
 2020-04-01 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S440/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434204 MT632863
 2020-04-01 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S444/2020
 A6693G C8782T C14877T C17747T A17858G C18060T T28144C C28519T A29188T

EPI_ISL_434205 MT632960
 2020-04-01 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S445/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434206 MT632952
 2020-04-01 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S446/2020
 C8782T C17747T A17858G C18060T C22687T T28144C

EPI_ISL_434207 MT632916
 2020-04-01 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S447/2020
 C8782T C17747T A17858G C18060T C18264T C24919T T28144C

EPI_ISL_434208 MT633013
 2020-04-01 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S448/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434225 MT632876
 2020-04-01 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S465/2020
 A6693G C8782T C14877T C17747T A17858G C18060T T28144C C28519T A29188T

EPI_ISL_434226 MT632804
 2020-04-01 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S466/2020
 T13C C3311A C8782T G17671T C17747T A17858G C18060T T28144C

EPI_ISL_434234 MT632955
 2020-04-01 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S474/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_434235 MT632936
 2020-04-01 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S475/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_434238 MT633030
 2020-04-01 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S478/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434245 MT632974
 2020-04-01 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S485/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434246 MT632993
 2020-04-01 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S486/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434248 MT632884
 2020-04-01 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S488/2020
 C8782T G12347A C17747T A17858G C18060T T28144C C28744T

EPI_ISL_434253 MT632981
 2020-04-01 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S493/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434254 MT632920
 2020-04-01 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S494/2020
 C8782T C17747T A17858G C18060T C26058T T28144C

EPI_ISL_434255 MT632858
 2020-04-01 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S495/2020
 C241T C1059T C3037T G11083T C14408T A23403G G25563T G29553A

EPI_ISL_434258 MT633038
 2020-04-01 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S498/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434264 MT633027
 2020-04-01 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S504/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434266 MT632976
 2020-04-01 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S506/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434272 MT633018
 2020-04-01 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S512/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434273 MT633036
 2020-04-01 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S513/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434276 MT632998
 2020-04-01 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S516/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434282 MT633023
 2020-04-01 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S522/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434284 MT633016
 2020-04-01 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S524/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434285 MT632957
 2020-04-01 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S525/2020
 C8782T C16173T C17747T A17858G C18060T T28144C

EPI_ISL_434317 MT633021
 2020-04-01 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S557/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434657
 2020-04-01 2020-04-30
 Sweden hCoV-19/Sweden/20-06813/2020
 C241T G2945T C3037T C8025T C8290T C14408T A16941G A20268G A23403G G29734C

EPI_ISL_434941
 2020-04-01 2020-05-01
 United States hCoV-19/USA/TX-HMH347/2020
 C241T C2416T C3037T C14408T T20827C A23403G C25169T G25563T

EPI_ISL_434943
 2020-04-01 2020-05-01
 United States hCoV-19/USA/TX-HMH349/2020
 C241T C1059T C3037T C14408T C17939T A23403G G25429T G25563T C25919T C27964T

EPI_ISL_434966
 2020-04-01 2020-05-01
 United States hCoV-19/USA/TX-HMH378/2020
 T7789C C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434970
 2020-04-01 2020-05-01
 United States hCoV-19/USA/TX-HMH382/2020
 C241T C3037T C14408T A23403G

EPI_ISL_434976
 2020-04-01 2020-05-01
 United States hCoV-19/USA/TX-HMH389/2020
 C241T C1059T C3037T C5693T G6309T C10188T C14408T A23403G T24982C G25563T C27964T C28657T

EPI_ISL_434982
 2020-04-01 2020-05-01
 United States hCoV-19/USA/TX-HMH395/2020
 T490A C3177T C8782T T18736C G19684T C24034T T26729C C27635T G28077C T28144C A29700G

EPI_ISL_434987
 2020-04-01 2020-05-01
 United States hCoV-19/USA/TX-HMH400/2020
 T490A C3177T C6040T C8782T C8950T G12478A T18736C G20005A C24034T T26729C G28077C T28144C C28896G C29451T A29700G

EPI_ISL_434998
 2020-04-01 2020-05-01
 United States hCoV-19/USA/TX-HMH413/2020
 C241T C1684T C3037T G4631A C6310T C14408T C17766T G18898T A23403G A25315G C25413T GGG28881AAC

EPI_ISL_434999
 2020-04-01 2020-05-01
 United States hCoV-19/USA/TX-HMH415/2020
 C241T C3037T A6616G G14118T C14408T G15243T A23403G

EPI_ISL_435000
 2020-04-01 2020-05-01
 United States hCoV-19/USA/TX-HMH416/2020
 C241T C1059T C3037T C14408T A18082G A23403G G25563T C27964T

EPI_ISL_435001
 2020-04-01 2020-05-01
 United States hCoV-19/USA/TX-HMH417/2020
 C241T C1059T C3037T C14408T C23277T A23403G G25563T C27964T C28099T

EPI_ISL_435002
 2020-04-01 2020-05-01
 United States hCoV-19/USA/TX-HMH418/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_435003
 2020-04-01 2020-05-01
 United States hCoV-19/USA/TX-HMH420/2020
 C241T C1059T C3037T T14104C C14408T A23403G G25563T C27964T

EPI_ISL_435005
 2020-04-01 2020-05-01
 United States hCoV-19/USA/TX-HMH422/2020
 C241T C1059T C3037T C8092T C14408T A23403G G25563T C27964T

EPI_ISL_435006
 2020-04-01 2020-05-01
 United States hCoV-19/USA/TX-HMH423/2020
 T490A C3177T C6040T C8782T C8950T G12478A T18736C G21051A C24034T T26729C T26972C G28077C T28144C C28896G C29451T A29700G

EPI_ISL_435007
 2020-04-01 2020-05-01
 United States hCoV-19/USA/TX-HMH424/2020
 C241T C1059T C3037T C10319T C14408T C17285T A23403G G25563T C27964T

EPI_ISL_435008
 2020-04-01 2020-05-01
 United States hCoV-19/USA/TX-HMH425/2020
 C241T C1059T C3037T G4720A C14408T A23403G G25563T C27741T G28003T

EPI_ISL_435009
 2020-04-01 2020-05-01
 United States hCoV-19/USA/TX-HMH426/2020
 C241T C1059T C3037T G4720A C14408T A23403G G25563T C27741T G28003T

EPI_ISL_435679
 2020-04-01 2020-05-05
 Singapore hCoV-19/Singapore/74/2020
 ATTAAAGGTTTATACCT1- C6310A C6312A A8530R G11083T C13730T C19524T C23929T C28311T GGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29705-

EPI_ISL_435680
 2020-04-01 2020-05-05
 Singapore hCoV-19/Singapore/75/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCT1- T1998W C6310A C6312A G11083T C13730T C17883Y C19524T C23929T G25770K C28311T C29642Y CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_436046
 2020-04-01 2020-05-05
 United States hCoV-19/USA/VI-CDC-1993/2020
 C241T G2813K C3037T C14408T G16181K G18325T A23403G GGG28881AAC A28911R AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_436569 MT706383
 2020-04-01 2020-05-06
 United States SARS-CoV-2/human/USA/WI-UW-275/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9195T C14408T T15354C C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_436570 MT706384
 2020-04-01 2020-05-06
 United States SARS-CoV-2/human/USA/WI-UW-276/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9195T C14408T T15354C C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_436634 MT706446
 2020-04-01 2020-05-06
 United States SARS-CoV-2/human/USA/WI-UW-340/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_437192
 2020-04-01 2020-05-08
 Indonesia hCoV-19/Indonesia/JKT-EIJK04/2020
 C14636T G15672T C23277T C24026T A29314T

EPI_ISL_437225
 2020-04-01 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0026/2020
 C241T T1165C C3037T G11083T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_437278
 2020-04-01 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0084/2020
 C241T C3037T C14408T G20980T A23403G

EPI_ISL_437279
 2020-04-01 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0085/2020
 A187G C241T C3037T C14408T G19086T A23403G

EPI_ISL_437280
 2020-04-01 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0086/2020
 C241T C3037T C14408T G19825T A23403G A28855G GGG28881AAC

EPI_ISL_437282
 2020-04-01 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0088/2020
 C241T T1165C C3037T G11083T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_437475
 2020-04-01 2020-05-09
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Jeddah64/2020
 T3G AGGTTTATAC6GA C16T C8782T G14122T G22468T T28144C G28878A G29742A TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_437496
 2020-04-01 2020-05-10
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Jeddah59/2020
 C241T C3037T C14408T C16915T C18877T A23403G T24202C G25563T C26735T

EPI_ISL_437497
 2020-04-01 2020-05-10
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Jeddah60/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_437630
 2020-04-01 2020-05-11
 Denmark hCoV-19/Denmark/ALAB-SSI-1046/2020
 C241T C1059T C1302T C3037T C14408T A23403G G25563T G28812T

EPI_ISL_437633
 2020-04-01 2020-05-11
 Denmark hCoV-19/Denmark/ALAB-SSI-1096/2020
 C241T C1059T C3037T T8788C G9479T C14408T C16049T A23403G G25563T G26951A

EPI_ISL_437634
 2020-04-01 2020-05-11
 Denmark hCoV-19/Denmark/ALAB-SSI-1100/2020
 C241T C1059T C3037T T12427C C14408T A23403G G23755T G25563T C25672T C29200T

EPI_ISL_437683
 2020-04-01 2020-05-11
 Denmark hCoV-19/Denmark/ALAB-SSI-991/2020
 C241T C1059T C3037T C14408T A23403G G25563T G29777T

EPI_ISL_437754
 2020-04-01 2020-05-11
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Jeddah61/2020
 C241T C3037T C14408T A23403G

EPI_ISL_437755
 2020-04-01 2020-05-11
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Jeddah66/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_437756
 2020-04-01 2020-05-11
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Jeddah68/2020
 C241T C3037T C14408T C15017T A23403G GGG28881AAC

EPI_ISL_437757
 2020-04-01 2020-05-11
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Jeddah70/2020
 C8782T T13728C G22468T T28144C G28878A G29742A

EPI_ISL_437758
 2020-04-01 2020-05-11
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Jeddah73/2020
 C241T C3037T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_437759
 2020-04-01 2020-05-11
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Jeddah75/2020
 T3906C C8782T C10576T G22468T C26333T T28144C G28878A G29742A

EPI_ISL_437760
 2020-04-01 2020-05-11
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Jeddah76/2020
 C8782T C10576T C14408T C16733A G22468T C26333T T28144C G28878A

EPI_ISL_437800 MT482147
 2020-04-01 2020-05-11
 United States SARS-CoV-2/human/USA/VA-DCLS-0167/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T G20991T A23403G G25563T C25585T C29870A

EPI_ISL_437813 MT461613
 2020-04-01 2020-05-11
 United States SARS-CoV-2/human/USA/WA-UW-4051/2020
 ATTAAAG1- TA11GT TC18GG C222T A3558G A6693G C8782T C17747T A17858G C18060T T28144C G29868A C29870A

EPI_ISL_437814 MT461614
 2020-04-01 2020-05-11
 United States SARS-CoV-2/human/USA/WA-UW-4058/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T C7728A C14408T C20703T A23403G G25563T G29553A G29868A C29870A -29904AAAAAAAAAAAAAAAA

EPI_ISL_437815 MT461615
 2020-04-01 2020-05-11
 United States SARS-CoV-2/human/USA/WA-UW-4061/2020
 A1C TA3GG TA11GT TCC18GGG C8782T C17747T A17858G C18060T T28144C

EPI_ISL_437816 MT461616
 2020-04-01 2020-05-11
 United States SARS-CoV-2/human/USA/WA-UW-4065/2020
 ATTAAAGGTTTATAC1- TT7825KK C7844A C8782T C17747T A17858G C18060T T28144C

EPI_ISL_437817 MT461617
 2020-04-01 2020-05-11
 United States SARS-CoV-2/human/USA/WA-UW-4067/2020
 ATTAAAGG1- TA11GT TCCC18GGGA C8782T A10844G C17747T A17858G C18060T T28144C -29904AAAAAAAAAAAAAA

EPI_ISL_437818 MT461618
 2020-04-01 2020-05-11
 United States SARS-CoV-2/human/USA/UNKNOWN-UW-4089/2020
 AT1- TA3GG TA11GT TCCC18GGGA C147T C241T C1059T C3037T C6040T C14408T A23403G G25563T -29904AAAAAAAAAAAAAAAA

EPI_ISL_437819 MT461619
 2020-04-01 2020-05-11
 United States SARS-CoV-2/human/USA/UNKNOWN-UW-4097/2020
 A1G AAA4GTT TA11GT C241T C1059T C3037T C14408T G20014T A23403G G25563T G29553A

EPI_ISL_437910 MT459924
 2020-04-01 2020-05-11
 Greece SARS-CoV-2/human/GRC/52_37266/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- A2480G C2558T G11083T C14805T C20402T G26144T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_438140
 2020-04-01 2020-05-12
 United States hCoV-19/USA/WA-S587/2020
 G237T C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_438515
 2020-04-01 2020-05-12
 United Kingdom hCoV-19/England/CAMB-7712F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G C9223T G11083T C14805T T17247C A17799G T20271C G26144T

EPI_ISL_438520
 2020-04-01 2020-05-12
 United Kingdom hCoV-19/England/CAMB-77541/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T C8733T G11083T C14805T T20401G G23868T T25202K G26144T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_439371
 2020-04-01 2020-05-12
 United Kingdom hCoV-19/England/CAMB-7716B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_439375
 2020-04-01 2020-05-12
 United Kingdom hCoV-19/England/CAMB-77426/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T C7279T G11083T C12213T C14805T G26144T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_439447
 2020-04-01 2020-05-12
 United Kingdom hCoV-19/England/CAMB-76F26/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G4185A G11083T C14805T G26144T C29013Y G29414R TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_439459
 2020-04-01 2020-05-12
 United Kingdom hCoV-19/England/CAMB-7717A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1514T A2480G C2558T G11083T C14805T G26144T G28487C G29140T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_439528
 2020-04-01 2020-05-12
 United Kingdom hCoV-19/England/CAMB-7781B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9565Y C11653T C14408T A23403G GGG28881AAC AA29521WR AA29902-

EPI_ISL_440694
 2020-04-01 2020-05-12
 United Kingdom hCoV-19/England/BRIS-122C5E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C10369T C14408T A23403G C23731T T25202K GGG28881AAC GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_441296
 2020-04-01 2020-05-12
 United Kingdom hCoV-19/England/CAMB-79C77/2020
 ATTAAAGGT1- C241T C3037T C14408T G18627A A20268G A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_441312
 2020-04-01 2020-05-12
 United Kingdom hCoV-19/England/CAMB-77E46/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_443279
 2020-04-01 2020-05-12
 France hCoV-19/France/B5434/2020
 C36T C241T C690T C1059T C3037T T13006C C14408T A23403G G25563T C25688T G28378T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_443280
 2020-04-01 2020-05-12
 France hCoV-19/France/B5447/2020
 C241T C3037T C14408T A23403G GGG28881AAC G29513T AAAAAAAAAAAAAAAAAAAAAA29882-

EPI_ISL_444708
 2020-04-01 2020-05-14
 United States hCoV-19/USA/NY-NYUMC591/2020
 C241T C1059T C1917T C3037T C14408T C20405T A23403G G25563T

EPI_ISL_444728
 2020-04-01 2020-05-14
 United States hCoV-19/USA/NY-NYUMC611/2020
 C241T C1059T C3037T C14408T C21575T A23403G G25563T C27519T

EPI_ISL_444729
 2020-04-01 2020-05-14
 United States hCoV-19/USA/NY-NYUMC612/2020
 C241T C1059T C3037T C14408T G14792T C15763T A23403G G25563T

EPI_ISL_444731
 2020-04-01 2020-05-14
 United States hCoV-19/USA/NY-NYUMC614/2020
 C241T C1059T C3037T A11755G C14408T A23403G G25563T A26973G

EPI_ISL_444733
 2020-04-01 2020-05-14
 United States hCoV-19/USA/NY-NYUMC616/2020
 C241T C1059T C3037T C6730T C14408T A23403G G25563T

EPI_ISL_445123
 2020-04-01 2020-05-15
 United States hCoV-19/USA/LA-SR0268/2020
 C241T C1059T C1191T C3037T C10188T C14408T A23403G T24982C G25563T C27964T

EPI_ISL_445125
 2020-04-01 2020-05-15
 United States hCoV-19/USA/LA-SR0270/2020
 C241T C1059T C3037T C14408T C18115T C21254T A23403G G25563T C27964T

EPI_ISL_445127
 2020-04-01 2020-05-15
 United States hCoV-19/USA/LA-SR0272/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T

EPI_ISL_445128
 2020-04-01 2020-05-15
 United States hCoV-19/USA/LA-SR0273/2020
 C241T C1059T C3037T C10319T C13119T C14408T A23403G G25563T C27964T

EPI_ISL_445133
 2020-04-01 2020-05-15
 United States hCoV-19/USA/LA-SR0278/2020
 C241T C1059T C3037T G6362A C10188T C14408T A23403G T24982C G25563T C27964T

EPI_ISL_445135
 2020-04-01 2020-05-15
 United States hCoV-19/USA/LA-SR0280/2020
 C241T C1059T C3037T C10188T C14408T A23403G T24982C G25563T C25886T C27509T C27964T

EPI_ISL_445137
 2020-04-01 2020-05-15
 United States hCoV-19/USA/LA-SR0282/2020
 C241T C1059T C3037T C10188T C14408T A23403G T24982C G25563T C27964T

EPI_ISL_445139
 2020-04-01 2020-05-15
 United States hCoV-19/USA/LA-SR0284/2020
 C241T C1059T C3037T C10319T C14408T G21898A A23403G G25563T C27964T

EPI_ISL_445140
 2020-04-01 2020-05-15
 United States hCoV-19/USA/LA-SR0285/2020
 C241T C1059T C3037T C10319T C14408T G22708T A23403G G25563T C27964T

EPI_ISL_445145
 2020-04-01 2020-05-15
 United States hCoV-19/USA/LA-SR0290/2020
 C241T C1059T G2900A C3037T C10319T C14408T A23403G G25563T C27964T

EPI_ISL_445227
 2020-04-01 2020-05-15
 Sweden hCoV-19/Sweden/20-06805/2020
 C241T C1059T C3037T C14408T G22273A A23403G G24368T G25563T

EPI_ISL_445228
 2020-04-01 2020-05-15
 Sweden hCoV-19/Sweden/20-06814/2020
 C241T C1059T C2842A G2849T C3037T C14408T A23403G G24368T G25537T G25563T G27463T G29742A

EPI_ISL_445229
 2020-04-01 2020-05-15
 Sweden hCoV-19/Sweden/20-06817/2020
 C241T C3037T A4495G C14195A C14408T A23403G

EPI_ISL_445349
 2020-04-01 2020-05-15
 Chile hCoV-19/Chile/Santiago_52/2020
 A1C T3A C241T A2475G C3037T C14408T A23403G G25477K T27299C GGG28881AAC T29148C ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_445350
 2020-04-01 2020-05-15
 Chile hCoV-19/Chile/Santiago_54/2020
 ATTAAAGGTTTATACC1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T C27804T GGG28881AAC GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_445352
 2020-04-01 2020-05-15
 Chile hCoV-19/Chile/Santiago_56/2020
 AT1TC A4T C241T C3037T C14408T A23403G T27299C GGG28881AAC T29148C TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_445916
 2020-04-01 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-2C815/2020
 C241T AAGTCATTT686- C3037T C6990T C14408T C19961Y C21306T A23403G C28776A C29200T

EPI_ISL_445946
 2020-04-01 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-2CAC4/2020
 ATTAAAGGT1- C241T C1059T C3037T G3065T C10376T C14408T G18583T A23403G G24368T G25563T G29773T

EPI_ISL_447019
 2020-04-01 2020-05-16
 Thailand hCoV-19/Thailand/Bangkok-0078/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1397A G11083T G14653A C15240T A20284G C28311G T28688C G29737T G29742T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_447090 MT506565
 2020-04-01 2020-05-16
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20293/2020
 C241T C3037T C14408T C17474T C18877T C23373Y A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_447265
 2020-04-01 2020-05-17
 Israel hCoV-19/Israel/990300724/2020
 A8040G G11083T C14805T T17247C G17590T C17676T G26144T G26660T C29627T AAAAAAAAAAAA29892-

EPI_ISL_447359
 2020-04-01 2020-05-17
 Israel hCoV-19/Israel/2089866/2020
 C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAA29892-

EPI_ISL_447360
 2020-04-01 2020-05-17
 Israel hCoV-19/Israel/2089863/2020
 C241T C3037T C11916T C14408T C18877T A23403G G25563T AAAAAAAAAAAA29892-

EPI_ISL_447361
 2020-04-01 2020-05-17
 Israel hCoV-19/Israel/2089861/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAA29892-

EPI_ISL_447366
 2020-04-01 2020-05-17
 Israel hCoV-19/Israel/2089718/2020
 C241T C2416T C3037T T8053C C14408T A15177G G20489T A23403G G25563T AAAAAAAAAAAA29892-

EPI_ISL_447374
 2020-04-01 2020-05-17
 Israel hCoV-19/Israel/2089366/2020
 C241T C1059T C3037T G7295T C14408T A23403G G23909T G25563T G28346T AAAAAAAAAAAA29892-

EPI_ISL_447375
 2020-04-01 2020-05-17
 Israel hCoV-19/Israel/2086045/2020
 C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAA29892-

EPI_ISL_447380
 2020-04-01 2020-05-17
 Israel hCoV-19/Israel/2086008/2020
 C241T AAGTCATTT686- C1059T C3037T C6781T C14408T C16616T A23403G G25563T AAAAAAAAAAAA29892-

EPI_ISL_447404
 2020-04-01 2020-05-17
 Israel hCoV-19/Israel/2046434/2020
 C241T C1059T C3037T G4925T C10582T C14408T G18391A A20755C C21304T A23403G G25563T G25784T AAAAAAAAAAAA29892-

EPI_ISL_447517
 2020-04-01 2020-05-17
 Spain hCoV-19/Spain/Valencia/COV000594/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C1594T C3037T G9053A C14408T A20268G C20436Y A23403G C24083A G29648T G29737A TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_447519
 2020-04-01 2020-05-17
 Spain hCoV-19/Spain/Valencia/COV000597/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23403G GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_447522
 2020-04-01 2020-05-17
 Spain hCoV-19/Spain/Valencia/COV000603/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C398T G5150A C8782T C26088T T28144C CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_447527
 2020-04-01 2020-05-17
 Spain hCoV-19/Spain/Valencia/COV000609/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T T17126C A20268G A21935C A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_447564
 2020-04-01 2020-05-17
 India hCoV-19/India/CCMB_J212/2020
 ATTAAAGGTTTAT1- C6312A G11083T C13730T C23929T C28311T

EPI_ISL_447565
 2020-04-01 2020-05-17
 India hCoV-19/India/CCMB_J278/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C13730T C19524T C28311T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_447566
 2020-04-01 2020-05-17
 India hCoV-19/India/CCMB_J131/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- C6312A G11083T C13730T A21792T C23929T C28311T C29722T

EPI_ISL_447567
 2020-04-01 2020-05-17
 India hCoV-19/India/CCMB_J304/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- A6081G C6312A G11083T C13730T C23929T C28311T

EPI_ISL_447568
 2020-04-01 2020-05-17
 India hCoV-19/India/CCMB_J166/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T G3994T C6312A C8139T T10421C G11083T C13730T C23929T C28311T

EPI_ISL_447569
 2020-04-01 2020-05-17
 India hCoV-19/India/CCMB_J206/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- A1717G G2393T C6310A C6312A G11083T C13730T C23929T C28311T

EPI_ISL_447570
 2020-04-01 2020-05-17
 India hCoV-19/India/CCMB_J207/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- G1820A G5210T C6310A C6312A G11083T C13730T C19524T C23929T C28311T

EPI_ISL_447571
 2020-04-01 2020-05-17
 India hCoV-19/India/CCMB_J224/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C6312A G11083T C13730T A21792T C23929T C24624T C28311T

EPI_ISL_447572
 2020-04-01 2020-05-17
 India hCoV-19/India/CCMB_J230/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C506T C6312A G11083T C13730T C23929T C28311T C29774T

EPI_ISL_447573
 2020-04-01 2020-05-17
 India hCoV-19/India/CCMB_J118/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- AG55CT A2111T C6312A G11083T C13730T A15491G C18486T T19344C C23929T C28311T A28752C

EPI_ISL_447574
 2020-04-01 2020-05-17
 India hCoV-19/India/CCMB_J208/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C6312A G11083T C13730T C23929T C28311T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_447593
 2020-04-01 2020-05-18
 Taiwan hCoV-19/Taiwan/TSGH-34/2020
 A3872T C8782T G15594T C17747T A17858G C18060T G18943C A24694T T25631A T28144C

EPI_ISL_447766
 2020-04-01 2020-05-18
 Colombia hCoV-19/Colombia/GUV-92250/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C1059T C3037T C14408T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_447771
 2020-04-01 2020-05-18
 Colombia hCoV-19/Colombia/GVI-93352/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G G25563T AATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29770-

EPI_ISL_447774
 2020-04-01 2020-05-18
 Colombia hCoV-19/Colombia/GVI-93366/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C1059T C3037T C14408T A23403G G25563T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_447775
 2020-04-01 2020-05-18
 Colombia hCoV-19/Colombia/GVI-93381/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C1059T C3037T C14408T A23403G G25563T GTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29759-

EPI_ISL_447777
 2020-04-01 2020-05-18
 Colombia hCoV-19/Colombia/GVI-93450/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T C3037T C14408T C18877T A23403G G25563T CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_447778
 2020-04-01 2020-05-18
 Colombia hCoV-19/Colombia/GVI-93457/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C3037T C14408T C18877T A23403G G25563T G27261T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_447779
 2020-04-01 2020-05-18
 Colombia hCoV-19/Colombia/GVI-93467/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C3037T C14408T C15810T A23403G GGG28881AAC AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_447780
 2020-04-01 2020-05-18
 Colombia hCoV-19/Colombia/GVI-93470/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C1059T A2018G C3037T C14408T A23403G G25563T ACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29761-

EPI_ISL_447848
 2020-04-01 2020-05-18
 India hCoV-19/India/CCMB_J165/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C6312A G11083T C11200T C13730T C18176T C18486T C23929T C28311T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_447849
 2020-04-01 2020-05-18
 India hCoV-19/India/CCMB_J107/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C635T C6312A G11083T C13730T C23929T C28253T C28311T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_447850
 2020-04-01 2020-05-18
 India hCoV-19/India/CCMB_J132/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C6312A G11083T C13730T A21792T C23929T C28311T C29722T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_447851
 2020-04-01 2020-05-18
 India hCoV-19/India/CCMB_J223/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- A6081G G11083T C13730T C24133T G28077T C28311T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_447852
 2020-04-01 2020-05-18
 India hCoV-19/India/CCMB_J235/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C1281T C6312A G9652T G11083T C13730T C23929T T25577C C28311T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_447853
 2020-04-01 2020-05-18
 India hCoV-19/India/CCMB_J247/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C589A G11083T C13011T C13730T C28311T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_447889 MT481929
 2020-04-01 2020-05-18
 United States SARS-CoV-2/human/USA/CA-CZB-1138/2020
 ATTAAAGGTTTA1- C241T GTT669- C1059T C3037T C14408T C18457T A23403G C25487T G25563T C27964T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_447891 MT481931
 2020-04-01 2020-05-18
 United States SARS-CoV-2/human/USA/CA-CZB-1140/2020
 ATTAAAGGTTTATAC1- C241T C1059T C3037T C9561T C14408T C17410A T21434W A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_449800
 2020-04-01 2020-05-19
 Chile hCoV-19/Chile/Santiago_53/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T T7310A GT7312AG T7316G T7332C TT7337GA T7342A C7355A T7357A C7389T A8380G C14408T A20268G A23403G TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_450326
 2020-04-01 2020-05-20
 India hCoV-19/India/CCMB_J125/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- G1820A C6310A C6312A G11083T C13730T C19524T C23929T C28311T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_450327
 2020-04-01 2020-05-20
 India hCoV-19/India/CCMB_J199/2020
 C6312A G11083T C13730T C23929T C28311T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_450328
 2020-04-01 2020-05-20
 India hCoV-19/India/CCMB_J283/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C6312A G11083T C13730T C19524T C23929T C28311T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_450329
 2020-04-01 2020-05-20
 India hCoV-19/India/CCMB_J288/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C6312A G11083T C13730T C23929T C28311T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_450331
 2020-04-01 2020-05-20
 India hCoV-19/India/CCMB_J220/2020
 ATTAAAGGTTTATACCTTCCCAG1- C6312A G11083T C13730T C23929T C28311T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_450332
 2020-04-01 2020-05-20
 India hCoV-19/India/CCMB_J222/2020
 ATTAAA1- C15- C1281T C6312A G11083T C13730T C23929T C28311T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_450401
 2020-04-01 2020-05-21
 United States hCoV-19/USA/NY-NYUMC684/2020
 C241T C1059T C3037T C4158T A8182C C14408T A23403G G25563T

EPI_ISL_450530
 2020-04-01 2020-05-21
 Poland hCoV-19/Poland/1111628/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C22571T A23403G CCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29801-

EPI_ISL_450708 MT506893
 2020-04-01 2020-05-21
 United States SARS-CoV-2/human/USA/WI-UW-354/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11083T C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_450721 MT506906
 2020-04-01 2020-05-21
 United States SARS-CoV-2/human/USA/WI-UW-367/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T G16381A T17877C C20316T C21707T G25500T C26124T T28144C G28878A G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_450732
 2020-04-01 2020-05-22
 Belgium hCoV-19/Belgium/ITM_C237/2020
 A187G C241T C3037T C14408T A23403G G25599T

EPI_ISL_450810
 2020-04-01 2020-05-22
 Sweden hCoV-19/Sweden/20-06737/2020
 C241T C3037T C13378T C14408T T20430C A23403G C27679T GGG28881AAC

EPI_ISL_451125
 2020-04-01 2020-05-23
 Australia hCoV-19/Australia/SAP090/2020
 C241T C3037T C6843T G11083T C14408T C17104T A20268G G23282T A23403G C29200T G29734C

EPI_ISL_451126
 2020-04-01 2020-05-23
 Australia hCoV-19/Australia/SAP091/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T C2416T C3037T C10560T C14408T A23403G G25563T

EPI_ISL_451167
 2020-04-01 2020-05-23
 Belgium hCoV-19/Belgium/UGent-54/2020
 C241T C3037T C14408T T19839C A23403G C24099T GGG28881AAC

EPI_ISL_451960 MT507796
 2020-04-01 2020-05-22
 United States SARS-CoV-2/homo sapien/USA/VI-CDC-3849/2020
 C241T C1059T C3037T C9724T C14408T A23403G G25563T TTTAGCC27794- C27964T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_451971 MT511066
 2020-04-01 2020-05-26
 Poland SARS-CoV-2/human/POL/PL_P10/2020
 C19T C106T C241T C3037T A8072G C14408T A23403G GGG28881AAC C29870M

EPI_ISL_451978 MT511073
 2020-04-01 2020-05-26
 Poland SARS-CoV-2/human/POL/PL_P17/2020
 C241T C3037T C14408T G14580T A23403G G29477K C29870M

EPI_ISL_451987 MT511082
 2020-04-01 2020-05-26
 Poland SARS-CoV-2/human/POL/PL_P26/2020
 C241T C541T A544G C3037T G4180T T7767C C11704T C14408T G19254T A23403G

EPI_ISL_452148
 2020-04-01 2020-05-26
 Belgium hCoV-19/Belgium/20A38/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T C15324T A23403G A28765G CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857TC

EPI_ISL_452189
 2020-04-01 2020-05-27
 Italy hCoV-19/Italy/VR_20COV33-126/2020
 TTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATC2- C241T C3037T C14408T A23403G GGG28881AAC C29311T TGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29785-

EPI_ISL_452234
 2020-04-01 2020-05-27
 Sweden hCoV-19/Sweden/20-07156/2020
 C241T AAGTCATTT686- C1059T C3037T C14408T A23403G G24368T C24904T G25563T

EPI_ISL_452371
 2020-04-01 2020-05-27
 Spain hCoV-19/Spain/COV002058/2020
 C4891T C8782T T9477A C14805T G25979T C26681T G26713K C27046Y T28144C C28657T C28863T C29870A

EPI_ISL_452809 MT558660
 2020-04-01 2020-05-27
 United States SARS-CoV-2/human/USA/VA-DCLS-0232/2020
 ATTAAAGGTTTA1- C241T C1059T C1917T C3037T C14408T C20480T C21597G A23403G G25563T G28655T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_453164
 2020-04-01 2020-05-27
 United Kingdom hCoV-19/Scotland/EDB4839/2020
 C241T C3037T C10798A C13862T C14408T A23403G C28836T G29134A

EPI_ISL_454211
 2020-04-01 2020-05-28
 Portugal hCoV-19/Portugal/PT0487/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C2416T C3037T C14408T C14786T C19884T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454370
 2020-04-01 2020-05-28
 United States hCoV-19/USA/PA-MGEL86/2020
 C241T C1059T C3037T C8481T C14408T A23403G G25563T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_454374
 2020-04-01 2020-05-28
 United States hCoV-19/USA/PA-MGEL92/2020
 C241T C1059T C3037T T3909C C5031T C13430T C14408T A23403G G25563T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_454380
 2020-04-01 2020-05-28
 United States hCoV-19/USA/PA-MGEL100/2020
 C241T C3037T C5878T C14408T A23403G G25644T GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_454381
 2020-04-01 2020-05-28
 United States hCoV-19/USA/PA-MGEL102/2020
 C241T C3037T C14408T C18877T A23403G G25563T G28233A GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_454540
 2020-04-01 2020-05-28
 India hCoV-19/India/NIV-6216/2020
 C6312A C11074T G11083T C13730T G14181A C23929T C28311T A29827T G29830T

EPI_ISL_454639 MT533236
 2020-04-01 2020-05-28
 United States SARS-CoV-2/human/USA/CA-CZB-1281/2020
 A1- C337Y T490A C3177T C4475T C6040T C8782T G12478R T18736C C19118T G22403R C24034T T26729C G28077C T28144C C28896G A29700G GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_454640 MT533237
 2020-04-01 2020-05-28
 United States SARS-CoV-2/human/USA/CA-CZB-1282/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C1059T A2018G A3010G C3037T C14408T T21995C A23403G G25563T G28764K CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_454775
 2020-04-01 2020-05-29
 Netherlands hCoV-19/Netherlands/Utrecht_10026/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC G29751C AAAAAA29898-

EPI_ISL_454777
 2020-04-01 2020-05-29
 Netherlands hCoV-19/Netherlands/Utrecht_10028/2020
 ATTAAA1- C241T C3037T G11083T C14408T A23403G G24328T C27046T GGG28881AAC AAAAAA29898-

EPI_ISL_455113
 2020-04-01 2020-05-29
 Netherlands hCoV-19/Netherlands/Flevoland_4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C20148T A23403G G29422T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455119
 2020-04-01 2020-05-29
 Netherlands hCoV-19/Netherlands/Friesland_16/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T9477A C14805T TTA21991- G25979T T28144C C28657T C28863T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455249
 2020-04-01 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_447/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G12550A C14408T A20268G C20740A A23403G G29734C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455258
 2020-04-01 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_456/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455285
 2020-04-01 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_483/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1997T C3037T C14408T A23403G G29422T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455287
 2020-04-01 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_485/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C478T C3037T G12550A C14408T G18583A A20268G C20740A C20946T G23120T A23403G C25578T G29734C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455441
 2020-04-01 2020-05-29
 Poland hCoV-19/Poland/PL_P28/2020
 C19T C106T C241T C3037T A8072G C14408T A23403G GGG28881AAC

EPI_ISL_455443
 2020-04-01 2020-05-29
 Poland hCoV-19/Poland/PL_P30/2020
 C19T C106T C241T C3037T A8072G C14408T C20801T A23403G GGG28881AAC

EPI_ISL_455448
 2020-04-01 2020-05-29
 Poland hCoV-19/Poland/PL_P35/2020
 C19T C106T C241T C3037T A8072G C14408T C20801T A23403G GGG28881AAC

EPI_ISL_455599
 2020-04-01 2020-06-01
 Australia hCoV-19/Australia/VPRL007/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27128T

EPI_ISL_455994
 2020-04-01 2020-06-01
 United States hCoV-19/USA/LA-EVTL151/2020
 C241T T523A C1059T C3037T C14408T A23403G G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_455995
 2020-04-01 2020-06-01
 United States hCoV-19/USA/LA-EVTL152/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_455996
 2020-04-01 2020-06-01
 United States hCoV-19/USA/LA-EVTL153/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_455997
 2020-04-01 2020-06-01
 United States hCoV-19/USA/LA-EVTL154/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_455998
 2020-04-01 2020-06-01
 United States hCoV-19/USA/LA-EVTL155/2020
 T184G T490A C3177T C6040T C6843T C8782T C8950T G12478A T18736C C20283T C24034T T26729C G28077C T28144C C28896G GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_455999
 2020-04-01 2020-06-01
 United States hCoV-19/USA/LA-EVTL156/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_456000
 2020-04-01 2020-06-01
 United States hCoV-19/USA/LA-EVTL157/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_456001
 2020-04-01 2020-06-01
 United States hCoV-19/USA/LA-EVTL158/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_456002
 2020-04-01 2020-06-01
 United States hCoV-19/USA/LA-EVTL159/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T G28985A GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_456072
 2020-04-01 2020-06-01
 Brazil hCoV-19/Brazil/RJ-1056/2020
 ATTA1- C241T C3037T C14408T A23403G T27299C GGG28881AAC T29148C GAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29781-

EPI_ISL_456073
 2020-04-01 2020-06-01
 Brazil hCoV-19/Brazil/RJ-1058/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27297A T27299C GGG28881AAC T29148C CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_456074
 2020-04-01 2020-06-01
 Brazil hCoV-19/Brazil/RJ-1065/2020
 A1- C241T C622T C3037T C14408T A23403G T27299C GGG28881AAC T29148C GAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29781-

EPI_ISL_456295
 2020-04-01 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1890/2020
 C241T C3037T C6723T C14408T A23403G T26094C

EPI_ISL_456296
 2020-04-01 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1891/2020
 C241T C1059T C3037T T5013C C14408T C16260T A23403G G25563T C28821A

EPI_ISL_456297
 2020-04-01 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1893/2020
 C241T C1059T C3037T T8788C C14408T A23403G G25563T T26897C G26951A

EPI_ISL_456299
 2020-04-01 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1897/2020
 C241T C1059T C3037T C10798T C12534T C14408T C16260T A23403G G25563T C28821A

EPI_ISL_456304
 2020-04-01 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1908/2020
 C241T C1059T C3037T C14408T C16260T A23403G G25563T C28821A

EPI_ISL_456316
 2020-04-01 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1937/2020
 C241T C1059T C3037T C14408T C16260T A23403G G25563T C28821A

EPI_ISL_456324
 2020-04-01 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1990/2020
 C241T C1059T C3037T C14408T C16260T A23403G G25563T C28821A

EPI_ISL_456326
 2020-04-01 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1997/2020
 C241T C1059T C3037T T12883C C14408T C16260T A23403G G25563T C28821A

EPI_ISL_456327
 2020-04-01 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR2000/2020
 G1440A G2891A C10507T A28675T C29003A A29242G

EPI_ISL_456328
 2020-04-01 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR2001/2020
 C241T C1059T C3037T C14408T C16260T A23403G G25563T C28821A

EPI_ISL_456329
 2020-04-01 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR2002/2020
 C241T C1059T C3037T C14408T C16260T A23403G G25563T C28821A

EPI_ISL_456330
 2020-04-01 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR2004/2020
 C241T G393A C3037T C14408T A23403G A24862G

EPI_ISL_456331
 2020-04-01 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR2006/2020
 C241T G393A C3037T C14408T A23403G A24862G

EPI_ISL_456332
 2020-04-01 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR2011/2020
 C241T C1059T C3037T C14408T C16260T A23403G G25563T C28821A

EPI_ISL_456334
 2020-04-01 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR2015/2020
 C8782T G11083T C17747T C18060T T28144C

EPI_ISL_456335
 2020-04-01 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR2017/2020
 C241T C1059T C3037T C14408T C16260T A23403G G25563T C28821A

EPI_ISL_456336
 2020-04-01 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR2019/2020
 C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T

EPI_ISL_456338
 2020-04-01 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR2030/2020
 C241T C3037T C6723T C14408T A23403G T26094C

EPI_ISL_456339
 2020-04-01 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR2032/2020
 C241T C1059T C3037T C14408T C16260T A23403G G25563T C28821A

EPI_ISL_456342
 2020-04-01 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR2037/2020
 C241T C1059T C3037T C14408T C16260T A23403G G25563T C28821A

EPI_ISL_456904
 2020-04-01 2020-06-02
 United Kingdom hCoV-19/Scotland/EDB2900/2020
 C241T C3037T C10798A C13862T C14408T A23403G C28836T

EPI_ISL_456953
 2020-04-01 2020-06-02
 United Kingdom hCoV-19/Scotland/EDB5041/2020
 C241T C3037T C14408T A20268G A23403G G29734C

EPI_ISL_456954
 2020-04-01 2020-06-02
 United Kingdom hCoV-19/Scotland/EDB5046/2020
 C241T T1344C C3037T C10798A C13862T C14408T C23327T A23403G C28836T

EPI_ISL_457134
 2020-04-01 2020-06-02
 United Kingdom hCoV-19/England/EXET-135B00/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_457181
 2020-04-01 2020-06-02
 United Kingdom hCoV-19/England/EXET-135F13/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_457627
 2020-04-01 2020-06-02
 United Kingdom hCoV-19/England/SHEF-C8514/2020
 C241T C3037T C14408T C18713T A23403G GGG28881AAC

EPI_ISL_457659
 2020-04-01 2020-06-02
 United Kingdom hCoV-19/England/SHEF-CDA2F/2020
 C241T C3037T C14408T C18713T A23403G GGG28881AAC

EPI_ISL_458071
 2020-04-01 2020-06-03
 India hCoV-19/India/CCMB_J130/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C6312A G11083T C13730T C14408T C23929T C28311T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_458262
 2020-04-01 2020-06-04
 United States hCoV-19/USA/CA-SR0382/2020
 C241T C1059T C3037T A8252G C14408T A23403G G25563T

EPI_ISL_458676
 2020-04-01 2020-06-04
 United Kingdom hCoV-19/England/NORT-28993F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458712
 2020-04-01 2020-06-04
 United Kingdom hCoV-19/England/NORT-289911/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C14786T A23403G T25099C G25471C TT27580- GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_459957
 2020-04-01 2020-06-05
 Malaysia hCoV-19/Malaysia/IMR_WC10180/2020
 ATTAAAGGTTT1- C6312A T7621C G11083T C13730T C23929T C25916T C28311T -AAA29874TTGCTCCTGGCT AAAA29880CTGT A29886C A29890T AAAAAAAA29893TTTTTTTT

EPI_ISL_459962
 2020-04-01 2020-06-05
 Germany hCoV-19/Germany/Cento-70001814/2020
 C241T C3037T C14408T G20134T A23403G GGG28881AAC

EPI_ISL_459963
 2020-04-01 2020-06-05
 Germany hCoV-19/Germany/Cento-70004280/2020
 C241T C3037T C14408T G20134T A23403G GGG28881AAC

EPI_ISL_460098 MT520173
 2020-04-01 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00277/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C1059T C3037T G3892T C14408T A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_460120 MT520195
 2020-04-01 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00656/2020
 ATTAAAGGTTTATACCTTCCCA1- G105T C241T C3037T C14408T C18877T G19962A A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_460131 MT520206
 2020-04-01 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00267/2020
 ATTAAAGGTTTATAC1- C241T C1059T C3037T G3892T C14408T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460141 MT520216
 2020-04-01 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00266/2020
 ATTAAAGGTTTATACCTT1- C241T C1059T C3037T G3892T C14408T A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_460144 MT520219
 2020-04-01 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00274/2020
 ATTAAAGGTTTATA1- C241T C1059T C3037T G3892T C14408T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460148 MT520223
 2020-04-01 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00642/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C2416T C3037T C14408T A23403G G25563T A25759G C26447T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_460155 MT520230
 2020-04-01 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00288/2020
 ATTAAAGGTTTAT1- C241T C1059T C3037T G3892T C14408T A23403G G25563T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_460157 MT520232
 2020-04-01 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00297/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C1059T C3037T G3892T C14408T A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_460160 MT520235
 2020-04-01 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00264/2020
 ATTAAAGGTTTAT1- C241T C1059T C3037T G3892T C14408T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460164 MT520239
 2020-04-01 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00269/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C1059T C3037T G3892T C14408T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460169 MT520244
 2020-04-01 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00285/2020
 ATTAAAGGTTT1- C241T C1059T C3037T G3892T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_460171 MT520246
 2020-04-01 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00291/2020
 ATTAAAGGTTTA1- C241T C1059T C3037T G3892T C14408T A23403G G25563T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_460172 MT520247
 2020-04-01 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00276/2020
 ATTAAAGGTTTAT1- C241T C1059T C3037T G3892T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_460181 MT520256
 2020-04-01 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00283/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C1059T C3037T G3892T C14408T A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_460195 MT520270
 2020-04-01 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00281/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C1059T C3037T G3892T C14408T A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_460196 MT520271
 2020-04-01 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00290/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C1059T C3037T G3892T C14408T A23403G G25563T T29026C TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_460198 MT520273
 2020-04-01 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00445/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T G3892T C14408T G20062T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_460210 MT520285
 2020-04-01 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00280/2020
 ATTAAA1- C241T C1059T C3037T G3892T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_460234 MT520309
 2020-04-01 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00287/2020
 ATTAAAGGTTTA1- C241T C1059T C3037T G3892T C14408T A23403G G25563T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_460243 MT520318
 2020-04-01 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00270/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C1059T C3037T G3892T C14408T A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_460249 MT520324
 2020-04-01 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00273/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C1059T C3037T G3892T C14408T A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_460255 MT520330
 2020-04-01 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00299/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C1059T C3037T G3892T C14408T C16887T A23403G G25563T GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_460265 MT520340
 2020-04-01 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00298/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C3037T C4423T C10207T A12004G C14408T A23403G C29774T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460274 MT520349
 2020-04-01 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00294/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C1059T C3037T G3892T C14408T A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_460282 MT520357
 2020-04-01 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00645/2020
 ATTAAAGGTTTATA1- C241T C2416T C3037T T10216C C14408T A23403G G25563T G26233T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_460294 MT520369
 2020-04-01 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00265/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C1059T C3037T G3892T C7926T C14408T T15648C C21575T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_460308 MT520383
 2020-04-01 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00447/2020
 ATTAAAGGTTTATAC1- C241T C1059T C3037T G3892T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_460342 MT520417
 2020-04-01 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00296/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T C1059T G1868A C3037T G3892T C14408T A23403G G25563T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_460352 MT520427
 2020-04-01 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00446/2020
 ATTAAAG1- C241T C1059T C3037T G3892T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_460379 MT520454
 2020-04-01 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00303/2020
 ATTAAAG1- C241T C1059T C3037T G3892T C14408T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460408 MT520483
 2020-04-01 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00282/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C1059T C3037T G3892T C14408T A23403G G25563T GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_460430 MT520505
 2020-04-01 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00304/2020
 ATTAAAGGTTTATA1- C241T C1059T C3037T G3892T A13768G C14408T A23403G G25563T GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_460432 MT520507
 2020-04-01 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00305/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C1059T C3037T G3892T C14408T A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_460461 MT520536
 2020-04-01 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00295/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C1059T C3037T G3892T C14408T C21575T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460463 MT520538
 2020-04-01 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00272/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C1059T C3037T G3892T C14408T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460464 MT520539
 2020-04-01 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00271/2020
 ATTAAAGGTTTAT1- C241T C1059T C3037T G3892T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_460638
 2020-04-01 2020-06-06
 Netherlands hCoV-19/Netherlands/Flevoland_5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C11109T C14408T A23403G G25563T C26461T C27476T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460685
 2020-04-01 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_512/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1997T C3037T C14408T A23403G G29422T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460688
 2020-04-01 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_515/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1997T C3037T C14408T A23403G G29422T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460791
 2020-04-01 2020-06-06
 Netherlands hCoV-19/Netherlands/NoordHolland_10/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C3037T C14408T C16017T T16515C A23403G G26814T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460797
 2020-04-01 2020-06-06
 Netherlands hCoV-19/Netherlands/NoordHolland_8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C478T C3037T G12550A C14408T A20268G C20740A A23403G CTTTAGCACTCAATTTGCTTTTGCTTGTCCTGACGGCGTAAAACACGTCTAT27567- C28826T G29734C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460798
 2020-04-01 2020-06-06
 Netherlands hCoV-19/Netherlands/NoordHolland_9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C478T C3037T G12550A C14408T A20268G C20740A A23403G C25578T G29734C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461337
 2020-04-01 2020-06-06
 Netherlands hCoV-19/Netherlands/ZuidHolland_165/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T16993C G20275A T23084C A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_462218
 2020-04-01 2020-06-08
 Belgium hCoV-19/Belgium/LPJ-0401364/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T G20578T A23403G C25433T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462220
 2020-04-01 2020-06-08
 Belgium hCoV-19/Belgium/DRR-0401366/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A13318G C14408T A23403G G24794T T29729C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462222
 2020-04-01 2020-06-08
 Belgium hCoV-19/Belgium/LJA-0401368/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G17014T G23009T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462225
 2020-04-01 2020-06-08
 Belgium hCoV-19/Belgium/VBMJ-0401430/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6507G C14408T A23403G C27999T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462226
 2020-04-01 2020-06-08
 Belgium hCoV-19/Belgium/VRMJ-0401372/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6507G C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462227
 2020-04-01 2020-06-08
 Belgium hCoV-19/Belgium/IMJ-0401373/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G11083T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462229
 2020-04-01 2020-06-08
 Belgium hCoV-19/Belgium/OTG-0401375/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T G27240T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462230
 2020-04-01 2020-06-08
 Belgium hCoV-19/Belgium/HHC-0401376/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T C28312T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462418
 2020-04-01 2020-06-08
 Singapore hCoV-19/Singapore/300/2020
 G3085T C6310A C6312A G11083T C13730T C17304T C19524T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_462434 MT569470
 2020-04-01 2020-06-05
 Serbia SARS-CoV-2/human/SRB/NS838-04/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2910T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462472
 2020-04-01 2020-06-08
 Bosnia and Herzegovina hCoV-19/Bosnia and Herzegovina/ChVir7382/2020
 ATTAAAGGTTTAT1- C241T C3037T C14408T C15324T A23403G C29769T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_463004 MT499218
 2020-04-01 2020-05-20
 Tunisia SARS-CoV-2/human/TUN/COV1663/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- T41C C241T C3037T G3896T C7420T A11935C C14408T C15324T G18523T C20032T C21648T A23403G T29811C A29813G T29817G T29822C A29824C TAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29826-

EPI_ISL_463745
 2020-04-01 2020-06-10
 Cyprus hCoV-19/Cyprus/005/2020
 C241T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_463933
 2020-04-01 2020-06-11
 Canada hCoV-19/Canada/QC_AR6/2020
 C241T C1473T C3037T C14408T C15324T A23403G C25433T C27567T

EPI_ISL_464016
 2020-04-01 2020-06-11
 Canada hCoV-19/Canada/ON-UHTC_0033/2020
 C241T C313T C2449T C3037T C14408T C17372T A23403G GGG28881AAC

EPI_ISL_464048
 2020-04-01 2020-06-11
 Canada hCoV-19/Canada/ON-UHTC_0062/2020
 C241T C1059T C3037T C14408T A23403G G25563T G28368A

EPI_ISL_466014
 2020-04-01 2020-06-11
 United Kingdom hCoV-19/England/20146003804/2020
 C241T C3037T C14408T C18788T T19839C A23403G GGG28881AAC

EPI_ISL_466016
 2020-04-01 2020-06-11
 United Kingdom hCoV-19/England/20146005604/2020
 C335T A744R G1508A G11083T C14805T T20928C C23707T G26144T A29412C

EPI_ISL_466018
 2020-04-01 2020-06-11
 United Kingdom hCoV-19/England/20146006804/2020
 C241T C3037T C14408T A23403G C25703Y GGG28881AAC

EPI_ISL_466026
 2020-04-01 2020-06-11
 United Kingdom hCoV-19/England/20146010404/2020
 C241T C2724T C3037T C5822T C14408T C15763T A23403G A28811T GGG28881AAC A29873R

EPI_ISL_466028
 2020-04-01 2020-06-11
 United Kingdom hCoV-19/England/20146011404/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_466034
 2020-04-01 2020-06-11
 United Kingdom hCoV-19/England/20146016004/2020
 C241T C3037T T11075Y C14408T A23403G GGG28881AAC G29468T T29867G

EPI_ISL_466038
 2020-04-01 2020-06-11
 United Kingdom hCoV-19/England/20146019504/2020
 A1350T A2480G C2558T C14805T G26144T

EPI_ISL_466039
 2020-04-01 2020-06-11
 United Kingdom hCoV-19/England/20146019804/2020
 A2480G C2558T C3688Y G4180K G11083T C11139T C14805T C16289Y C16887T G26144T C27213T G29332K

EPI_ISL_466041
 2020-04-01 2020-06-11
 United Kingdom hCoV-19/England/20146021304/2020
 C14805T G22332R C23707T G26144T

EPI_ISL_466043
 2020-04-01 2020-06-11
 United Kingdom hCoV-19/England/20146057204/2020
 C241T C3037T C14408T A23403G GGG28881AAC C29555T

EPI_ISL_466047
 2020-04-01 2020-06-11
 United Kingdom hCoV-19/England/20146064204/2020
 A732R G1440A G2891A A6944G A29895T

EPI_ISL_466062
 2020-04-01 2020-06-11
 United Kingdom hCoV-19/England/20148035404/2020
 C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_466065
 2020-04-01 2020-06-11
 United Kingdom hCoV-19/England/20148036404/2020
 C241T C835T C3037T C14408T G14414T G16325K C19170T G19509A G22081T A23403G G27632K GGG28881AAC

EPI_ISL_467188
 2020-04-01 2020-06-12
 Spain hCoV-19/Spain/COV003669/2020
 C241T T661C C3037T C4423T C14408T A20268G A23403G G29734C

EPI_ISL_467189
 2020-04-01 2020-06-12
 Spain hCoV-19/Spain/COV003663/2020
 C241T C3037T C14408T A20268G A23403G G29734C

EPI_ISL_467193
 2020-04-01 2020-06-12
 Spain hCoV-19/Spain/COV003667/2020
 C8782T A15337G C25916T C26088T T28144C

EPI_ISL_467206
 2020-04-01 2020-06-12
 Spain hCoV-19/Spain/COV003662/2020
 C10834T G11083T G26144T C26735T

EPI_ISL_467209
 2020-04-01 2020-06-12
 Spain hCoV-19/Spain/COV003668/2020
 C241T C3037T C14408T A20268G A23403G

EPI_ISL_467213
 2020-04-01 2020-06-12
 Spain hCoV-19/Spain/COV003653/2020
 C241T C2939T C3037T C9532T C14408T A20268G A23403G

EPI_ISL_467215
 2020-04-01 2020-06-12
 Spain hCoV-19/Spain/COV003665/2020
 C241T C3037T C14408T A20268G A23403G G28027T

EPI_ISL_467218
 2020-04-01 2020-06-12
 Spain hCoV-19/Spain/COV003670/2020
 C186T C241T C3037T C8140T T14103C C14408T A20268G A23403G

EPI_ISL_467222
 2020-04-01 2020-06-12
 Spain hCoV-19/Spain/COV003660/2020
 C241T C3037T G5230A C6606T C11124T C14408T A20268G A23403G

EPI_ISL_467239
 2020-04-01 2020-06-12
 Spain hCoV-19/Spain/COV003657/2020
 C8782T A23403G G29734C

EPI_ISL_467245
 2020-04-01 2020-06-12
 Spain hCoV-19/Spain/COV003661/2020
 C8782T T12364A G17144A C18348T A19719T C26088T T28144C

EPI_ISL_467247
 2020-04-01 2020-06-12
 Spain hCoV-19/Spain/COV003654/2020
 C913Y C4540Y C6666Y A8026W G8653K C8782T T9477W C11606Y C14805Y C16466Y A24837W G25979K T28144C C28657T C28863T

EPI_ISL_467254
 2020-04-01 2020-06-12
 Spain hCoV-19/Spain/COV003664/2020
 C241T C3037T C14408T A20268G A23403G G29734C

EPI_ISL_467255
 2020-04-01 2020-06-12
 Spain hCoV-19/Spain/COV003646/2020
 C241T C3037T C14408T A20268G A23403G

EPI_ISL_467454
 2020-04-01 2020-06-14
 South Africa hCoV-19/South Africa/KRISP-0080/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T C16376T A23403G

EPI_ISL_467470
 2020-04-01 2020-06-14
 South Africa hCoV-19/South Africa/KRISP-0118/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C16376T A23403G TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_467471
 2020-04-01 2020-06-14
 South Africa hCoV-19/South Africa/KRISP-0119/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23403G TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_467472
 2020-04-01 2020-06-14
 South Africa hCoV-19/South Africa/KRISP-0120/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C3037T C5672A C14408T C16376T A23403G TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_467473
 2020-04-01 2020-06-14
 South Africa hCoV-19/South Africa/KRISP-0121/2020
 ATTA1- C241T C3037T C14408T C16376T A23403G GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_467474
 2020-04-01 2020-06-14
 South Africa hCoV-19/South Africa/KRISP-0122/2020
 ATTAAAGGT1- C241T C3037T C14408T C16376T A23403G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_467632
 2020-04-01 2020-06-14
 United States hCoV-19/USA/NM-UNM-00085/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_467633
 2020-04-01 2020-06-14
 United States hCoV-19/USA/NM-UNM-00086/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_468010
 2020-04-01 2020-06-16
 Australia hCoV-19/Australia/SAP257/2020
 ATTA1- G11083T A12986G C14805T C16969T C23707T G26144T G28899T

EPI_ISL_468040
 2020-04-01 2020-06-16
 Australia hCoV-19/Australia/SAP271/2020
 ATT1- C241T C1059T C3037T C14408T A23403G G25563T C27128T

EPI_ISL_468453 MT628181
 2020-04-01 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1506/2020
 ATTAAAGGTTTATACCTT1- C241T T2824Y C3037T C4540T G4904T G5206T C14408T A15779R A23403G C24138T C25350T

EPI_ISL_468456 MT628184
 2020-04-01 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1509/2020
 C241T C3037T C4540T G4904T G5206T C5585S C14408T T18690C A23403G C24138T C25350T AAAAAAAAAAAAAAAAAAAAAA29882-

EPI_ISL_468498 MT628222
 2020-04-01 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1561/2020
 C241T C1059T C3037T C8982Y C11916T C14408T C18998T A23403G G25563T G29540A GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_468529 MT628252
 2020-04-01 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1600/2020
 A1- C36S C241T C1059T C3037T C14408T C16260T A23403G G25563T C27509Y C28821A GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_468531 MT628254
 2020-04-01 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1602/2020
 ATTA1- T11K C8782T C17747T A17858G C18060T T28144C T29748C

EPI_ISL_468622 MT631813
 2020-04-01 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1684/2020
 AT1- C241T C379A C1059T C3037T C14408T A20374G A23403G G25563T ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_469054
 2020-04-01 2020-06-17
 Morocco hCoV-19/Morocco/Mor-CoV-6/2020
 C241T C1059T C3037T C12970T C14408T A23403G G25563T

EPI_ISL_469179
 2020-04-01 2020-06-17
 United States hCoV-19/USA/CT-Yale-253/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469181
 2020-04-01 2020-06-17
 United States hCoV-19/USA/CT-Yale-255/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469183
 2020-04-01 2020-06-17
 United States hCoV-19/USA/CT-Yale-257/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4234T G7312A G7331A C8619T C9994T G11150A C14408T C17470T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469184
 2020-04-01 2020-06-17
 United States hCoV-19/USA/CT-Yale-258/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C11916T C14408T C16376T C18998T A23403G G25563T G29540A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469186
 2020-04-01 2020-06-17
 United States hCoV-19/USA/CT-Yale-260/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T9070C T10960C C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469289
 2020-04-01 2020-06-18
 Japan hCoV-19/Japan/Donner31/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T C313T C3037T C14408T A14650R A15124G A23403G T23584C T26966A GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_469548
 2020-04-01 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12759A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469551
 2020-04-01 2020-06-18
 United Kingdom hCoV-19/England/BRIS-1275E5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A11782G C14408T G22203T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469553
 2020-04-01 2020-06-18
 United Kingdom hCoV-19/England/BRIS-1277D0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G15327T T19839C A23403G C26681T T28618C GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_469568
 2020-04-01 2020-06-18
 United Kingdom hCoV-19/England/BRIS-127846/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C19170T G19509A A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_469603
 2020-04-01 2020-06-18
 United Kingdom hCoV-19/England/BRIS-1276A6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1968T C3037T C14408T A23403G G25563T C29546M G29705T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469634
 2020-04-01 2020-06-18
 United Kingdom hCoV-19/England/BRIS-127855/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6573T C8655T C14408T A23403G C25521A C25528T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469645
 2020-04-01 2020-06-18
 United Kingdom hCoV-19/England/BRIS-1278FB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18647Y A23403G GGG28881AAC G29414K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469681
 2020-04-01 2020-06-18
 United Kingdom hCoV-19/England/BRIS-1278A0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5497T C5826T C14408T G22583A A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469771
 2020-04-01 2020-06-18
 United Kingdom hCoV-19/England/BRIS-1277B2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3871T C14408T A23403G G25523T C27970T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469793
 2020-04-01 2020-06-18
 United Kingdom hCoV-19/England/BRIS-127837/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6573T C8655T C14408T G21778T A23403G C25521A G25523T C25528T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_470843
 2020-04-01 2020-06-19
 Australia hCoV-19/Australia/WA25/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C241T C3037T A3852T C14408T C22450T A23403G C27046T GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_471552
 2020-04-01 2020-06-22
 Brazil hCoV-19/Brazil/SP-549/2020
 G24C C241T C3037T A6319G C14408T A23403G G25088T T26149C GGG28881AAC GG29861TT AAAAAAAAAAAAA29891-

EPI_ISL_471957
 2020-04-01 2020-06-23
 United Kingdom hCoV-19/England/EXET-137245/2020
 G1440A G2891A C4668T T5521C C7815T A11144C A15187G C16159T

EPI_ISL_471960
 2020-04-01 2020-06-23
 United Kingdom hCoV-19/England/EXET-1372FA/2020
 C241T C3037T C14408T C18981T A20268G A23403G

EPI_ISL_474888
 2020-04-01 2020-06-23
 Spain hCoV-19/Spain/Granada-COV002990/2020
 T7375C C8782T T9477A A12316G C14805T A22151G G25979T T28144C C28657T C28863T

EPI_ISL_474962
 2020-04-01 2020-06-23
 Israel hCoV-19/Israel/CVL-n-6656/2020
 C241T C2416T C3037T C14408T C20719T A23403G G25563T

EPI_ISL_474968
 2020-04-01 2020-06-23
 Israel hCoV-19/Israel/CVL-n-13881/2020
 C241T C2416T C3037T C7998T C14408T A23403G G25563T G25855T

EPI_ISL_475117
 2020-04-01 2020-06-23
 Sweden hCoV-19/Sweden/20-08765/2020
 C241T C1059T C3037T T10288A C14408T A23403G G24368T G25563T

EPI_ISL_475118
 2020-04-01 2020-06-23
 Sweden hCoV-19/Sweden/20-50591/2020
 C241T C3037T A10984G C14408T A23403G A26530G

EPI_ISL_475148
 2020-04-01 2020-06-23
 Sweden hCoV-19/Sweden/20-50562/2020
 C241T C1059T C3037T C14408T T23042C A23403G G24368T G25563T G25690T A28482T A28574T

EPI_ISL_475585
 2020-04-01 2020-06-23
 United States hCoV-19/USA/CA-CSMC11/2020
 C241T C3037T C14408T C18877T A23403G G25563T

EPI_ISL_475642
 2020-04-01 2020-06-23
 United States hCoV-19/USA/CA-CSMC31/2020
 C241T C379A C1059T G1821A C3037T AC5283GT A5754G G7936C G9278T C14408T G18867A G21533A C23271T A23403G G25563T

EPI_ISL_475646
 2020-04-01 2020-06-23
 United States hCoV-19/USA/CA-CSMC35/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27765T

EPI_ISL_475654
 2020-04-01 2020-06-23
 United States hCoV-19/USA/CA-CSMC42/2020
 C1929T C6312T C8782T C9661T G13763T C17747T A17858G C17896T C18060T C26542A T26545G C27707T C27925T T28144C

EPI_ISL_475655
 2020-04-01 2020-06-23
 United States hCoV-19/USA/CA-CSMC43/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_475661
 2020-04-01 2020-06-23
 United States hCoV-19/USA/CA-CSMC49/2020
 C241T C1059T C3037T C13536T C14408T A23403G G25563T

EPI_ISL_475666
 2020-04-01 2020-06-23
 United States hCoV-19/USA/CA-CSMC53/2020
 C241T T11443C G16005T C17934A G25563T G25681T G27467A

EPI_ISL_475669
 2020-04-01 2020-06-23
 United States hCoV-19/USA/CA-CSMC56/2020
 A1079C G1397A T7225C C9319T G11083T C19862T T27384C T28688C G29742T

EPI_ISL_475670
 2020-04-01 2020-06-23
 United States hCoV-19/USA/CA-CSMC57/2020
 C241T C1059T C3037T T8649C C14408T A23403G G25563T

EPI_ISL_475671
 2020-04-01 2020-06-23
 United States hCoV-19/USA/CA-CSMC58/2020
 C241T C313T C3037T C4320T C14408T A23403G GGG28881AAC

EPI_ISL_475674
 2020-04-01 2020-06-23
 United States hCoV-19/USA/CA-CSMC60/2020
 C241T C379A C1059T C3037T C14408T A23403G G25563T

EPI_ISL_475675
 2020-04-01 2020-06-23
 United States hCoV-19/USA/CA-CSMC61/2020
 C241T C3037T C6541T C14408T A23403G T25430C GGG28881AAC

EPI_ISL_475676
 2020-04-01 2020-06-23
 United States hCoV-19/USA/CA-CSMC62/2020
 C241T C1059T C3037T C14408T C18582T A23403G G25563T AGTGACAACAGATGTTTCATCTCGTTGACTT27191-

EPI_ISL_475793
 2020-04-01 2020-06-25
 Austria hCoV-19/Austria/CeMM0323/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T19839C A23403G C27393T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475794
 2020-04-01 2020-06-25
 Austria hCoV-19/Austria/CeMM0324/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10870T T12436C C14408T C18452T A23403G A24862G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475795
 2020-04-01 2020-06-25
 Austria hCoV-19/Austria/CeMM0326/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475796
 2020-04-01 2020-06-25
 Austria hCoV-19/Austria/CeMM0329/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T9477A C14805T C16466Y C21304A G25979T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475797
 2020-04-01 2020-06-25
 Austria hCoV-19/Austria/CeMM0330/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6638T C14408T T18136Y A20268G A23403G C24333T G29527K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475798
 2020-04-01 2020-06-25
 Austria hCoV-19/Austria/CeMM0331/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6638Y C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475799
 2020-04-01 2020-06-25
 Austria hCoV-19/Austria/CeMM0333/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475825
 2020-04-01 2020-06-25
 Austria hCoV-19/Austria/CeMM0382/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T C17747T C19718T C22323T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475826
 2020-04-01 2020-06-25
 Austria hCoV-19/Austria/CeMM0384/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T C19718T C22323T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475827
 2020-04-01 2020-06-25
 Austria hCoV-19/Austria/CeMM0385/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C11109T C14408T A23403G G25563T C26750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475923
 2020-04-01 2020-06-25
 Austria hCoV-19/Austria/CeMM0576/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11345T C11412T T13258C C14408T A23403G G25526T C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476792
 2020-04-01 2020-06-25
 United States hCoV-19/USA/CA-CZB-1775/2020
 T13Y C241T C3037T C6664T G12514T C14408T A23403G G28703C GGG28881AAC

EPI_ISL_476846
 2020-04-01 2020-06-26
 India hCoV-19/India/DRDE 197/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGC1- C6312A T8022G T8246Y A8663R T11694Y T11696G C12885T C13730T A20630R C23929T C28311Y TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_478424
 2020-04-01 2020-06-30
 United Kingdom hCoV-19/England/LOND-D6D0C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G11083T C14805T G26144T ATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29815-

EPI_ISL_478426
 2020-04-01 2020-06-30
 United Kingdom hCoV-19/England/LOND-D6D2A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1044T C3037T C14408T A23403G TA27720- GGG28881AAC CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_478427
 2020-04-01 2020-06-30
 United Kingdom hCoV-19/England/LOND-D6D39/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T T17247C C19854T G26144T CACG27879TC C27883T CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_478428
 2020-04-01 2020-06-30
 United Kingdom hCoV-19/England/LOND-D6D48/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C17746T A23403G GGG28881AAC ATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29815-

EPI_ISL_478429
 2020-04-01 2020-06-30
 United Kingdom hCoV-19/England/LOND-D6D66/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A12229G C14408T A23403G G24368T G25563T ATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29815-

EPI_ISL_478430
 2020-04-01 2020-06-30
 United Kingdom hCoV-19/England/LOND-D6D75/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5784T C14408T A23403G ATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29815-

EPI_ISL_478636
 2020-04-01 2020-06-30
 United Kingdom hCoV-19/England/NORT-29545D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16289T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478637
 2020-04-01 2020-06-30
 United Kingdom hCoV-19/England/NORT-29546C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G431A ATG1605- C1616T C20270T C24642G A29683T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478638
 2020-04-01 2020-06-30
 United Kingdom hCoV-19/England/NORT-295675/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T C17410T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479623
 2020-04-01 2020-06-30
 Russia hCoV-19/Russia/CRIE180117/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C683T C2416T C3037T G8371T C14408T A23403G G25563T CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_480010
 2020-04-01 2020-07-01
 Japan hCoV-19/Japan/PG-0337/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCT1- C241T C313T C3037T C14408T A23403G GGG28881AAC TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_480029
 2020-04-01 2020-07-01
 Japan hCoV-19/Japan/PG-0357/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C3037T C14408T G16221T A17829T A23403G A26530G ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480068
 2020-04-01 2020-07-01
 Japan hCoV-19/Japan/PG-0399/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACT1- C241T C313T C823T C3037T C14408T G17721T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480069
 2020-04-01 2020-07-01
 Japan hCoV-19/Japan/PG-0400/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C313T A810G C3037T C14408T A23403G G26730A GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_480090
 2020-04-01 2020-07-01
 Japan hCoV-19/Japan/PG-0422/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480127
 2020-04-01 2020-07-01
 Japan hCoV-19/Japan/PG-0466/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G G25879T GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_480130
 2020-04-01 2020-07-01
 Japan hCoV-19/Japan/PG-0470/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G GGG28881AAC TAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29817-

EPI_ISL_480131
 2020-04-01 2020-07-01
 Japan hCoV-19/Japan/PG-0471/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480132
 2020-04-01 2020-07-01
 Japan hCoV-19/Japan/PG-0472/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T G14575A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480133
 2020-04-01 2020-07-01
 Japan hCoV-19/Japan/PG-0473/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C313T C3037T C14408T A23403G GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_480134
 2020-04-01 2020-07-01
 Japan hCoV-19/Japan/PG-0474/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G GGG28881AAC TATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29832-

EPI_ISL_480177
 2020-04-01 2020-07-01
 Japan hCoV-19/Japan/PG-0519/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T G4300T C14408T A23403G G25249T G25563C GGG28881AAC G29543T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480182
 2020-04-01 2020-07-01
 Japan hCoV-19/Japan/PG-0524/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480202
 2020-04-01 2020-07-01
 Japan hCoV-19/Japan/PG-0546/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACT1- C241T C3037T C14408T A20268G A23403G TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_480221
 2020-04-01 2020-07-01
 Japan hCoV-19/Japan/PG-0589/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCT1- C3264G C11752T C16952T C18120T T24499C C25665T TTA27698- T28912C TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_480789
 2020-04-01 2020-07-02
 Senegal hCoV-19/Senegal/1966/2020
 A2274G C2306T C8782T C24370T T28144C G28878A G29742A

EPI_ISL_480806 MT703973
 2020-04-01 2020-07-02
 United States SARS-CoV-2/human/USA/FL-BPHL-0155/2020
 ATTAAAGG1- C241T C3037T C11018A C14408T A23403G G25135T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_481254
 2020-04-01 2020-07-03
 Japan hCoV-19/Japan/NGS-SC-1/2020
 A1- C241T C313T C3037T C14408T A23403G GGG28881AAC G28975T

EPI_ISL_481266 MT704120
 2020-04-01 2020-07-02
 United States SARS-CoV-2/human/USA/MD-MDH-0017/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- -31C C241T C3037T C14408T C18877T A23403G G25563T

EPI_ISL_481267 MT704121
 2020-04-01 2020-07-02
 United States SARS-CoV-2/human/USA/MD-MDH-0019/2020
 ATTAAAGGTT1- A2480G C2558T C9170T G11083T C14805T G26144T C27741T G29868A

EPI_ISL_481268 MT704122
 2020-04-01 2020-07-02
 United States SARS-CoV-2/human/USA/MD-MDH-0020/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C1059T C3037T C14408T A23403G G25563T G29690T A29865G G29868C

EPI_ISL_481269 MT704123
 2020-04-01 2020-07-02
 United States SARS-CoV-2/human/USA/MD-MDH-0021/2020
 C241T C619T C1059T C3037T G14277T C14408T A14912G A23403G G25563T

EPI_ISL_481270 MT704124
 2020-04-01 2020-07-02
 United States SARS-CoV-2/human/USA/MD-MDH-0023/2020
 ATTA1- C241T C1059T C3037T C14408T C22624A A23403G G25563T

EPI_ISL_481746
 2020-04-01 2020-07-03
 Canada hCoV-19/Canada/NB_248/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25217T G25563T ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_481749
 2020-04-01 2020-07-03
 Canada hCoV-19/Canada/NB_252/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T15354C C18877T A23403G G25563T G29227T ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_482292
 2020-04-01 2020-07-03
 United States hCoV-19/USA/OR-PROV-001/2020
 A4236G C7858T G11083T C12084T C14805T C17288T T25655C G26144T

EPI_ISL_482293
 2020-04-01 2020-07-03
 United States hCoV-19/USA/OR-PROV-002/2020
 A2480G C2558T G11083T C14805T C18714T G26144T C27012T

EPI_ISL_482301
 2020-04-01 2020-07-03
 United States hCoV-19/USA/OR-PROV-014/2020
 C241T C3037T C13665A C14408T A23403G GGG28881AAC

EPI_ISL_483177
 2020-04-01 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0492-SAN/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C11916T C14408T A23403G G25563T G27870T

EPI_ISL_483183
 2020-04-01 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0499-SAN/2020
 C241T C1059T C3037T C14408T C16762T A23403G G25563T G29527T

EPI_ISL_483188
 2020-04-01 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0505-SAN/2020
 ATTA1- C241T C3037T C11020T C14408T A20268G A23403G T24076C C28854T

EPI_ISL_483197
 2020-04-01 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0518-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T AAGTCATTT686- C1059T C3037T C14408T A23403G G25563T A26433G

EPI_ISL_484806
 2020-04-01 2020-07-08
 United States hCoV-19/USA/MI-UM-2006S001122/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A5011C C8683T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485396
 2020-04-01 2020-07-09
 South Korea hCoV-19/South Korea/S5/2020
 A2345G A2480G C2558T C10604T G11083T C14805T G26144T

EPI_ISL_485871 MT739477 MT913090
 2020-04-01 2020-07-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0620/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C2416T C3037T G4523A C10712T C14408T A23403G G25563T

EPI_ISL_486481 LR860594
 2020-04-01 2020-07-10
 Switzerland hCoV-19/Switzerland/110049_163_F8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C673Y G1355T C3037T G10097R C10647Y C14408T C16848T T18144C A19298W C22347S A23403G C23731T A27392W C27849Y GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_486487 LR860602
 2020-04-01 2020-07-10
 Switzerland hCoV-19/Switzerland/110057_164_C1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C280T C1059T C3037T A3116G A3660C C14408T G19480K A23403G G25563T T27546Y C27600Y T27772Y G29032K TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_486491 LR860607
 2020-04-01 2020-07-10
 Switzerland hCoV-19/Switzerland/110061_164_E12/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1710T C3037T G4006R G10642T C14408T A19440R G19539K C22347S A22472R A23403G C26111Y C27727Y GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_486499 LR860625
 2020-04-01 2020-07-10
 Switzerland hCoV-19/Switzerland/110070_165_H5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T A9641G C14408T C15324T T22516W A23403G G29742T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_486658
 2020-04-01 2020-07-10
 Italy hCoV-19/Italy/Hsacco-21/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_486827
 2020-04-01 2020-07-10
 Russia hCoV-19/Russia/CRIE175960/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T A3076G C3373A C14408T A23403G GGG28881AAC CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_486828
 2020-04-01 2020-07-10
 Russia hCoV-19/Russia/CRIE176675/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T C14408T A23403G C28868T GGG28881AAC CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_486829
 2020-04-01 2020-07-10
 Russia hCoV-19/Russia/CRIE187963/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T G11029A A12886G C14408T C21772T A23403G GGG28881AAC C29518T CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_486913 MT742088
 2020-04-01 2020-07-10
 United States SARS-CoV-2/human/USA/MD-MDH-0022/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- A2480G C2558T G11083T C14805T G22346T G26144T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_486914 MT742089
 2020-04-01 2020-07-10
 United States SARS-CoV-2/human/USA/MD-MDH-0024/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T T7237C C14408T A23403G G25563T A29866G

EPI_ISL_487703
 2020-04-01 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2894/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27998T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487707
 2020-04-01 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5554/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487721
 2020-04-01 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5543/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C17676T A23403G C27294T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487789
 2020-04-01 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5584/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C17676T A23403G C27294T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487805
 2020-04-01 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2911/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487809
 2020-04-01 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2865/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487815
 2020-04-01 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2886/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T17126C A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487934
 2020-04-01 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2907/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488516
 2020-04-01 2020-07-14
 United Kingdom hCoV-19/England/NORT-295851/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G19300T A20268G A23403G C26447T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488522
 2020-04-01 2020-07-14
 United Kingdom hCoV-19/England/NORT-283A7E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A C7926T C13530T T27404A A27669G C28253Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488524
 2020-04-01 2020-07-14
 United Kingdom hCoV-19/England/NORT-2956EE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T C17410Y T25202K G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488561
 2020-04-01 2020-07-14
 United Kingdom hCoV-19/England/NORT-283786/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G T3313C C9223T G11083T C14805T T17247C A21625G T24589C T25202K G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488568
 2020-04-01 2020-07-14
 United Kingdom hCoV-19/England/NORT-283908/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C3912T C7423T C24054T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488577
 2020-04-01 2020-07-14
 United Kingdom hCoV-19/England/NORT-2838DE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C5581T C14805T T25202K G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488583
 2020-04-01 2020-07-14
 United Kingdom hCoV-19/England/NORT-283829/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G T3313C C9223T G11083T C14805T T17247C G17679T A21625G G26144T C28253Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488615
 2020-04-01 2020-07-14
 United Kingdom hCoV-19/England/NORT-283601/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1710T C3037T C14408T A23403G C25350T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488642
 2020-04-01 2020-07-14
 United Kingdom hCoV-19/England/NORT-295693/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T C17410T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488643
 2020-04-01 2020-07-14
 United Kingdom hCoV-19/England/NORT-2839BD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G T25202K C27513T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488651
 2020-04-01 2020-07-14
 United Kingdom hCoV-19/England/NORT-295684/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T C17410T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488652
 2020-04-01 2020-07-14
 United Kingdom hCoV-19/England/NORT-29597C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G T25202K C28854T G29737A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488663
 2020-04-01 2020-07-14
 United Kingdom hCoV-19/England/NORT-283865/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13051T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488677
 2020-04-01 2020-07-14
 United Kingdom hCoV-19/England/NORT-2956FD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T T17247C G25218T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488684
 2020-04-01 2020-07-14
 United Kingdom hCoV-19/England/NORT-2838FC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T A2219G C3037T G11521T C14408T G21123T C23185T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488691
 2020-04-01 2020-07-14
 United Kingdom hCoV-19/England/NORT-29595E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1627T C3037T C14408T A23403G T25202K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488692
 2020-04-01 2020-07-14
 United Kingdom hCoV-19/England/NORT-29588E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C2091T C4683T G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488693
 2020-04-01 2020-07-14
 United Kingdom hCoV-19/England/NORT-283926/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3177T C8645T C13035T C14408T C16466Y C18877T A23403G C23643T G24197T T24923C G25563T C26735T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488705
 2020-04-01 2020-07-14
 United Kingdom hCoV-19/England/NORT-283917/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G C9223T G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488708
 2020-04-01 2020-07-14
 United Kingdom hCoV-19/England/NORT-2839AE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G T25202K G27996T GGG28881AAC G29315T G29468C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488711
 2020-04-01 2020-07-14
 United Kingdom hCoV-19/England/NORT-29594F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1912T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488721
 2020-04-01 2020-07-14
 United Kingdom hCoV-19/England/NORT-29599A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G C9223T G11083T C14805T T17247C A17799G G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488735
 2020-04-01 2020-07-14
 United Kingdom hCoV-19/England/NORT-283856/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13051T C14408T G22604K A23403G T25202K GGG28881AAC G28968T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_488736
 2020-04-01 2020-07-14
 United Kingdom hCoV-19/England/NORT-295745/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G G22225T A23403G C29535T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488884
 2020-04-01 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2859/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16289T G19009T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488886
 2020-04-01 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2917/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488895
 2020-04-01 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2909/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3543T C14408T C16289T A23403G G23426T G25429T C27800T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488897
 2020-04-01 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2915/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6286T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488915
 2020-04-01 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2904/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6578T C14408T C18348T A23403G AAATTG26096- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488930
 2020-04-01 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2885/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T T19533C A23403G C28312Y C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488931
 2020-04-01 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2869/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488945
 2020-04-01 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2908/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T C21622T C22088T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488957
 2020-04-01 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2902/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4900A C14408T C17678T A23403G G28191T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488973
 2020-04-01 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2896/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14697T C14805T T16820C G26144T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489010
 2020-04-01 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2906/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489027
 2020-04-01 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2893/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9565T C12400T C14408T A23403G C26499T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489030
 2020-04-01 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2913/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1076T C3037T C10582T C14408T A23403G G25563T C28310T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_490210
 2020-04-01 2020-07-15
 United States hCoV-19/USA/NC-Q2-NPVal-Donor1/2020
 ATTAAAGGTTTATACCTTC1- C241T C379A C1059T C3037T T9596C G11893T C14408T G16707T A22481G A23403G A24922G G25563T CC29837AT GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_490211
 2020-04-01 2020-07-15
 United States hCoV-19/USA/NC-Q2-NPVal-Donor2/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C379A C1059T C3037T T9596C G11893T C14408T G16707T A22481G A23403G A24922G G25563T A29827T TGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29829-

EPI_ISL_490212
 2020-04-01 2020-07-15
 United States hCoV-19/USA/NC-Q2-NPVal-Donor3/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C379A C1059T C3037T C14408T A23403G G25563T A29827T TGCT29829- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_490213
 2020-04-01 2020-07-15
 United States hCoV-19/USA/NC-Q2-NPVal-Donor4/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C379A C1059T C3037T C14408T A23403G G25563T TGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29840CT

EPI_ISL_490214
 2020-04-01 2020-07-15
 United States hCoV-19/USA/NC-Q2-NPVal-Donor5/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C379A C1059T C3037T C14408T A23403G G25563T C29837A TGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29840CT

EPI_ISL_490215
 2020-04-01 2020-07-15
 United States hCoV-19/USA/NC-Q2-NPVal-Donor6/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C379A C1059T C3037T C14408T A23403G G25563T C25669T A29827T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_490216
 2020-04-01 2020-07-15
 United States hCoV-19/USA/NC-Q2-NPVal-Donor10/2020
 ATTAAAGGTTTATACCT1- CCAGG20- C241T C379A C1059T C3037T C14408T A23403G G25563T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_490217
 2020-04-01 2020-07-15
 United States hCoV-19/USA/NC-Q2-NPVal-Donor13/2020
 A1G TAA3CTG G7T C241T C379A C1059T C3037T C14408T A23403G G25563T T29848A A29850T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_490218
 2020-04-01 2020-07-15
 United States hCoV-19/USA/NC-Q2-NPVal-Donor14/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A17344G A23403G G25563T CTCAAAAAGAGATGGCAACTAGCACT25585- T29848A ATAGCTT29850- C29857T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_490219
 2020-04-01 2020-07-15
 United States hCoV-19/USA/NC-Q2-NPVal-Donor15/2020
 TTAAAGGTTTATACCTTCCCAGGT2- G2305T G11083T G11108T C14805T A15779C T17247C G23426T G26144T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_490220
 2020-04-01 2020-07-15
 United States hCoV-19/USA/NC-Q2-NPVal-Donor17/2020
 ATTAAAGGTTTATACCTTCCCAGG1- G2305T G11083T G11108T C14805T A15779C T17247C G23426T G26144T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_490221
 2020-04-01 2020-07-15
 United States hCoV-19/USA/NC-Q2-NPVal-Donor18/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C3037T G9479T C14408T A23403G TACGTGCCA27623- TAATAGCTTCTTAGGAG29848- GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_490222
 2020-04-01 2020-07-15
 United States hCoV-19/USA/NC-Q2-NPVal-Donor20/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C313T C904T CATTTGTCACGCACTCAAAGGGATTGTACAGAAAGTGTGTTAAATCCAGAGAAGAAACTGGCC2388- C3037T A11348G G11634T C14408T C20148T A23403G AGTTGTAAACATTCAAAAAGAAAT25087- GGG28881AAC CAT29838ATC TAA29848ACC A29852G T29855C TT29858CC GGA29861AAGTGCTG A29865G G29868T AAA29872GGC AA29876TG AAA29879GCC AA29883CC AAAAAAAAA29886TGCCTGGCC AAAAAA29898-

EPI_ISL_490223
 2020-04-01 2020-07-15
 United States hCoV-19/USA/NC-Q2-NPVal-Donor21/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- G2305T A7024T ATGAATGGACGTACCATATTGGGTAGTGCTTTATTAGAAGATGAATTTACACCTTTTGATGTTGTTAGACAATGCTC10880- G11083T G11108T C14805T A15779C T17247C G23426T G26144T GAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29798-

EPI_ISL_491118
 2020-04-01 2020-07-16
 Czech Republic hCoV-19/Czech Republic/NRL_5752/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G18636T C22432T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491459
 2020-04-01 2020-07-17
 Peru hCoV-19/Peru/INS-034/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAA1- C241T C3037T C4002T G10097A C13335T C13536T C14408T A23403G C23731T GGG28881AAC G29179T ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_491460
 2020-04-01 2020-07-17
 Peru hCoV-19/Peru/INS-035/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAA1- C241T C3037T C4002T C6255T G10097A C13536T C14408T A23403G C23731T GGG28881AAC G29179T ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_491461
 2020-04-01 2020-07-17
 Peru hCoV-19/Peru/INS-038/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAA1- C241T C3037T C4002T C5343A G10097A C11322T C13536T C14408T A23403G C23731T GGG28881AAC G29179T ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_491504
 2020-04-01 2020-07-17
 United Kingdom hCoV-19/Scotland/EDB6725/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3543T C14408T C16289T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491668
 2020-04-01 2020-07-17
 United Kingdom hCoV-19/Scotland/EDB698/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G11083T C14805T C19011T A19782G G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492068 MT775828
 2020-04-01 2020-07-19
 Poland SARS-CoV-2/human/POL/PL_P43/2020
 ATTAAA1- C241T C3037T C3587T G7936A C11572T C14408T A23403G GGG28881AAC C29870A

EPI_ISL_492152
 2020-04-01 2020-07-20
 Australia hCoV-19/Australia/SAP387/2020
 ATTAAAGGTTTATACCTTCCCAG1- G374A C5777T C8782T C17747T A17858G C18060T T28144C

EPI_ISL_492181 MT766907
 2020-04-01 2020-07-16
 United States SARS-CoV-2/human/USA/AR-UAMS001/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10851T C14408T A23403G G25444T G25563T A28874G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492182 MT766908
 2020-04-01 2020-07-16
 United States SARS-CoV-2/human/USA/AR-UAMS002/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7513C C14408T A23403G C27213T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492371
 2020-04-01 2020-07-20
 United Kingdom hCoV-19/England/BRIS-18531B5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC G29100A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492444
 2020-04-01 2020-07-20
 United Kingdom hCoV-19/England/BRIS-18531D3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T4265A C8344T C14408T C17010T C22949T C23086T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493063
 2020-04-01 2020-07-20
 United States hCoV-19/USA/WY-WYPHL-20007007/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C3037T A7870G C14408T A23403G G25563T C27964T

EPI_ISL_494296
 2020-04-01 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-168876/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G1440A G2891A G16537K C17977T C25669T G28851T C29545T

EPI_ISL_494344
 2020-04-01 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-168BE6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G1440A G2891A C25669T G28851T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_494364
 2020-04-01 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-168D95/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15237T T21722C A23403G G25459T A26592W GGG28881AAC

EPI_ISL_494400
 2020-04-01 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1157/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C1059T C3037T G3340T C12473T C14408T C19402T A23403G G25563T C26028T C27964T

EPI_ISL_494408
 2020-04-01 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1166/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C12473T C14408T A23403G G25563T C27964T

EPI_ISL_494412
 2020-04-01 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1171/2020
 ATTAAAGGTTTATACC1- C241T C1059T C1887T C3037T C14408T A23403G G25563T

EPI_ISL_494420
 2020-04-01 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1184/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T C3037T C12473T C14408T A23403G G25563T C27964T

EPI_ISL_494622
 2020-04-01 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1497/2020
 C241T A873G C1059T T1211G C3037T C14408T C21575T A23403G G24985T G25563T C27964T

EPI_ISL_494623
 2020-04-01 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1498/2020
 ATTAAAGGTTTA1- C241T C1059T C3037T C12473T C14408T A23403G G25563T C27964T

EPI_ISL_494717
 2020-04-01 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1653/2020
 ATTAAAGGTTTA1- C241T C1059T C3037T C14408T A23403G C25254T G25563T C27964T

EPI_ISL_494719
 2020-04-01 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1657/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T T1211G C3037T C14408T A23403G G25563T C27964T

EPI_ISL_494720
 2020-04-01 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1658/2020
 ATTAA1- C241T C1059T C3037T C12473T C14408T A23403G G25563T C27964T

EPI_ISL_494725
 2020-04-01 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1664/2020
 ATTAAAGGT1- C241T C1059T T1211G C3037T C14408T A23403G G24985T G25563T C27964T

EPI_ISL_494736
 2020-04-01 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1676/2020
 ATTA1- C241T C1059T T1211G C3037T C14408T A23403G G24985T G25563T C27964T

EPI_ISL_494739
 2020-04-01 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1681/2020
 ATTAAAGGTTTATAC1- C241T C1059T T1211G C3037T C14408T A23403G G24985T G25563T C27964T

EPI_ISL_494742
 2020-04-01 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1684/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C7932T C12473T C14408T A23403G G25563T C27964T

EPI_ISL_495379 MT791915
 2020-04-01 2020-07-22
 United States SARS-CoV-2/human/USA/FL-BPHL-0473/2020
 ATTA1- G3113C C9541T G11083T C14805T T17247C G21004T G25459T G26144T G29254A TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_495564
 2020-04-01 2020-07-23
 United States hCoV-19/USA/MI-UM-2006S000959/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T6905G C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_497818
 2020-04-01 2020-07-25
 China hCoV-19/Hong Kong/HKU-200723-051/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A C10507T T25577C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498163
 2020-04-01 2020-07-27
 Colombia hCoV-19/Colombia/95319/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_499358
 2020-04-01 2020-07-28
 United Kingdom hCoV-19/Wales/PHWC-168E74/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C6990T C14408T A23403G C29200T

EPI_ISL_499374
 2020-04-01 2020-07-28
 United Kingdom hCoV-19/Wales/PHWC-168F80/2020
 ATTAAAGGT1- G1820A A2480G C2558T T8599C G11083T C14805T G16236T G26144T C28344T

EPI_ISL_499429
 2020-04-01 2020-07-28
 United Kingdom hCoV-19/Wales/PHWC-16930B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C3264T C6990T C14408T A23403G C29200T

EPI_ISL_499442
 2020-04-01 2020-07-28
 United Kingdom hCoV-19/Wales/PHWC-169426/2020
 ATTAAAGGTTT1- C241T C3037T C6990T C14408T A23403G C29200T AAA29901-

EPI_ISL_499447
 2020-04-01 2020-07-28
 United Kingdom hCoV-19/Wales/PHWC-1694AE/2020
 ATTAAAGGTTTATAC1- C241T C3037T C14408T A23403G GGG28881AAC AAAAAAAAA29895-

EPI_ISL_500832 MT911797
 2020-04-01 2020-07-29
 United States SARS-CoV-2/human/USA/VA-DCLS-0574/2020
 ATTA1- A1515G C9223T G11083T C14805T T17247C A17799G C20825T G26144T C27688T G29562A

EPI_ISL_501191
 2020-04-01 2020-07-31
 Malaysia hCoV-19/Malaysia/2101/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C6312A T7621C G11083T C13730T C23929T C25549T C28311T

EPI_ISL_501210
 2020-04-01 2020-07-31
 Malaysia hCoV-19/Malaysia/3998/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C6312A G11083T C13730T C21736T C23929T G26365T C28311T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_506987
 2020-04-01 2020-08-02
 South Korea hCoV-19/Korea/KCDC2193/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G5572T C10038T G11083T C14805T G26144T G27441T G28580T

EPI_ISL_507017 MT820468
 2020-04-01 2020-07-30
 Saudi Arabia SARS-CoV-2/human/SAU/KAIMRC11/2020
 ATTAAAGGTTTATACC1- C241T C3037T C14408T C18877T A23403G C26735T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_507029 MT820487
 2020-04-01 2020-07-30
 Saudi Arabia SARS-CoV-2/human/SAU/KAIMRC67/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C3037T A11869G C14408T A23403G T27484C GGG28881AAC G29422T TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_507135
 2020-04-01 2020-08-03
 United Kingdom hCoV-19/England/PORT-2D1BF6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1461G C3037T C5730T C14408T G19542T A23403G G24328A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507609
 2020-04-01 2020-08-03
 United States hCoV-19/USA/MI-MDHHS-SC21355/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C11109Y C14408T A23403G G25563T TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_507612
 2020-04-01 2020-08-03
 United States hCoV-19/USA/MI-MDHHS-SC21358/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T T1237C C1380T C3037T C14408T A23403G G25563T C28291T TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_507619
 2020-04-01 2020-08-03
 United States hCoV-19/USA/MI-MDHHS-SC21365/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C1059T C3037T C11103T C14408T A23403G T25129A G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_507913
 2020-04-01 2020-08-03
 United States hCoV-19/USA/MI-MDHHS-SC21137/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T G11108A C14408T A23403G G25563T C25976A G27396T TGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29840-

EPI_ISL_508961
 2020-04-01 2020-08-04
 France hCoV-19/France/ARA1783/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCT1- C241T G3014A C3037T C14408T C15324T A15860G A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_508962
 2020-04-01 2020-08-04
 France hCoV-19/France/ARA1811/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTG1- C241T C1059T C3037T C14408T A23403G G25563T G28195T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_508963
 2020-04-01 2020-08-04
 France hCoV-19/France/ARA18212/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T C3037T C14408T A23403G G25563T GTACGATCGAGT29747- AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_508976
 2020-04-01 2020-08-04
 France hCoV-19/France/ARA19119/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTT1- C241T C1059T C3037T G3320A C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_509015
 2020-04-01 2020-08-04
 France hCoV-19/France/ARA18066/2020
 ATTAAAGG1- C241T C337T C3037T C9430T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_509016
 2020-04-01 2020-08-04
 France hCoV-19/France/ARA18148/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C1059T C3037T C9442T C14408T A23403G G25563T G28325A AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_511028
 2020-04-01 2020-08-07
 Portugal hCoV-19/Portugal/PT0769a/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T G17964T A23403G A26530G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511676
 2020-04-01 2020-08-08
 Portugal hCoV-19/Portugal/PT1129/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C14408T C21575T A23403G A26459C GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511689
 2020-04-01 2020-08-08
 Portugal hCoV-19/Portugal/PT1142/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C6539T C14408T A23403G G25305T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_512395
 2020-04-01 2020-08-11
 United Kingdom hCoV-19/England/PORT-2D14CE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1461G C3037T C5730T C14408T G19542T A23403G G24328A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_512400
 2020-04-01 2020-08-11
 United Kingdom hCoV-19/England/PORT-2D1534/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1457T A1717G A2480G C2558T G11083T C14805T G26144T C26340T G28851A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_512929
 2020-04-01 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH482/2020
 C241T C3037T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_512930
 2020-04-01 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH483/2020
 C241T C3037T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_512989
 2020-04-01 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH720/2020
 C8782T C21549T G22468T G27281T T28144C G29742A

EPI_ISL_512993
 2020-04-01 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH743/2020
 C241T C3037T C14408T C16915T C18877T A23403G T24202C G25563T

EPI_ISL_512994
 2020-04-01 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH746/2020
 C8782T G22468T T28144C G28878A G29742A

EPI_ISL_512995
 2020-04-01 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH747/2020
 C241T C14408T T27484C GGG28881AAC

EPI_ISL_512996
 2020-04-01 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH748/2020
 C241T C3037T C14408T C18877T A19779G A23403G G25563T C26735T

EPI_ISL_512997
 2020-04-01 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH754/2020
 C241T C3037T C8782T C14408T C18877T C29627T

EPI_ISL_512998
 2020-04-01 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH755/2020
 C241T C3037T C11224T C14408T A20268G A23403G C28854T

EPI_ISL_512999
 2020-04-01 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH756/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_513000
 2020-04-01 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH757/2020
 C241T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_513001
 2020-04-01 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH759/2020
 C241T C3037T C14408T C18877T C19170A A23403G G25563T C26735T

EPI_ISL_513121
 2020-04-01 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH273/2020
 C241T C3037T C14408T C18687T C18877T A23403G G25563T C26735T

EPI_ISL_513122
 2020-04-01 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH274/2020
 C241T C3037T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_513123
 2020-04-01 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH276/2020
 C241T C3037T C14189T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_513124
 2020-04-01 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH280/2020
 C241T C3037T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_513125
 2020-04-01 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH281/2020
 C241T C3037T C14408T C18877T A23403G G25563T C26735T C29750T

EPI_ISL_513126
 2020-04-01 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH282/2020
 C241T C3037T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_513182
 2020-04-01 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH704/2020
 C241T G4201T C14408T A23403G G25563T C26735T C28708T

EPI_ISL_513183
 2020-04-01 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH710/2020
 C241T C3037T C14408T G25563T C26735T

EPI_ISL_513184
 2020-04-01 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH711/2020
 C241T C3037T C14408T A23403G G25563T C26735T

EPI_ISL_513185
 2020-04-01 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH712/2020
 C241T C3037T C14408T A23403G G25563T C26735T

EPI_ISL_513186
 2020-04-01 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH713/2020
 C241T C3037T C14408T G25563T C26735T

EPI_ISL_513187
 2020-04-01 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH715/2020
 C241T C3037T C8782T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_513188
 2020-04-01 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH716/2020
 C241T C3037T C14189T C14408T C18877T G25563T C26735T

EPI_ISL_513189
 2020-04-01 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH717/2020
 C241T C3037T C14408T C25945A GGG28881AAC

EPI_ISL_513233
 2020-04-01 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MAKKAH741/2020
 C241T C3037T C14408T A23403G G25563T C26735T

EPI_ISL_515275
 2020-04-01 2020-08-18
 United States hCoV-19/USA/WA-UW-4589/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGT1- C241T C1059T C3037T C14408T C16859T A23403G G25563T G27281T GCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29742-

EPI_ISL_515345
 2020-04-01 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0064/2020
 ATTA1- C241T C313T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_515524
 2020-04-01 2020-08-19
 Brazil hCoV-19/Brazil/SP-125/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C3037T C12053T C14408T A23403G G25088T GGG28881AAC GGAG29861- AATG29865CTCT A29872T AAAAAAAAA29895-

EPI_ISL_515543
 2020-04-01 2020-08-19
 Brazil hCoV-19/Brazil/SP-137/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T G7675T C14408T A23403G T27299C GGG28881AAC T29148C GAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29864-

EPI_ISL_517713
 2020-04-01 2020-08-24
 Peru hCoV-19/Peru/INS-057/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAA1- C241T C3037T C4002T G10097A C13536T C14408T A22330T A23403G C23731T GGG28881AAC ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_522657 MT973301
 2020-04-01 2020-08-26
 Australia SARS-CoV-2/human/AUS/TAS228/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- A2848R C3634T C8782T C17747T A17858G C18060T T28144C AC29761- ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_523945
 2020-04-01 2020-08-27
 Germany hCoV-19/Germany/NW-74/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524473
 2020-04-01 2020-08-28
 Peru hCoV-19/Peru/LIM-INS-060/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAA1- C241T C3037T C14408T T19839C G22895T A23403G GGG28881AAC ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_525644
 2020-04-01 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-34728-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C1714T C3037T C14408T A23403G T25502A G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_525656
 2020-04-01 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-39698-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C11916T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_526470
 2020-04-01 2020-09-01
 United Kingdom hCoV-19/Scotland/EDB2889/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16289T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526827
 2020-04-01 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0610/2020
 ATTAAAGGTT1- C241T C313T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_526828
 2020-04-01 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0612/2020
 A1- C241T C1059T C3037T A3192G C11916T C14408T C18199T C18998T A23403G G25563T G25947C T28074C G28881T G29540A

EPI_ISL_526829
 2020-04-01 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0613/2020
 ATTAAAGGTTTATACCT1- A38R T490A C3177T G5554T C6040T C8782T G12478A T18736C A23370G C24034T T26729C G28077C T28144C C28896G A29700G AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_526830
 2020-04-01 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0614/2020
 C241T C1059T C3037T G12373T C14408T G17590A A23403G G25563T C26625T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_526831
 2020-04-01 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0616/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T G410T C1059T C3037T C9198T C14408T A23403G G25563T C28603T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_526832
 2020-04-01 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0617/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C504A C1059T C3037T C4246T C14408T A23403G G25563T G29745T AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_526834
 2020-04-01 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0621/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C1917T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_526835
 2020-04-01 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0622/2020
 ATTAAAGGTTT1- C241T C1059T G1944A C3037T A12026T C14408T A23403G G25563T C28391T C29722T C29774T

EPI_ISL_528990
 2020-04-01 2020-09-09
 Italy hCoV-19/Italy/ABR-IZSGC-TE10002/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C37M C241T C3037T A6866W A6869W C14408T A23403G G23771T GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_529009
 2020-04-01 2020-09-09
 Italy hCoV-19/Italy/ABR-IZSGC-TE9047/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C3037T A6866W A6869W C14408T A23403G GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_530053
 2020-04-01 2020-09-10
 Spain hCoV-19/Spain/MD-LP50/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A16448G A20268G A23403G C26270T ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_530220 MT997742
 2020-04-01 2020-09-10
 United States SARS-CoV-2/human/USA/MN-MDH-1624/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25563T T25773C C27673T C28957T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_530227
 2020-04-01 2020-09-11
 Australia hCoV-19/Australia/QLD979/2020/P1
 A1- C241T C3037T C14408T A20268G A23403G G25483A

EPI_ISL_530228
 2020-04-01 2020-09-11
 Australia hCoV-19/Australia/QLD968/2020/P1
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_530229
 2020-04-01 2020-09-11
 Australia hCoV-19/Australia/QLD978/2020/P1
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- ATG1605- C1912T

EPI_ISL_530230
 2020-04-01 2020-09-11
 Australia hCoV-19/Australia/QLD970/2020/P1
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_534346
 2020-04-01 2020-09-14
 Russia hCoV-19/Russia/CRIE181019/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T C14408T A23403G GGG28881AAC CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_534841
 2020-04-01 2020-09-14
 United Kingdom hCoV-19/England/OXON-B31BE/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_534852
 2020-04-01 2020-09-14
 United Kingdom hCoV-19/England/OXON-B3330/2020
 C241T C3037T G7229A A10948G C14408T A23403G GGG28881AAC A29889M A29892R AAAAAAAA29896-

EPI_ISL_534883
 2020-04-01 2020-09-14
 United Kingdom hCoV-19/England/OXON-B3725/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCT1- A2480G C2558T G11083T C14805T G26144T C28005T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_534884
 2020-04-01 2020-09-14
 United Kingdom hCoV-19/England/OXON-B3734/2020
 ATTAAAGGTTTAT1- C241T ATG518- C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_534904
 2020-04-01 2020-09-14
 United Kingdom hCoV-19/England/OXON-B3B83/2020
 C241T C3037T C14408T A23403G G27238T G28077T AAAAAAAA29896-

EPI_ISL_534918
 2020-04-01 2020-09-14
 United Kingdom hCoV-19/England/OXON-B3F2D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- A1515G C9223T C10277T G11083T C14805T T17247C G25906T G26144T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_534924
 2020-04-01 2020-09-14
 United Kingdom hCoV-19/England/OXON-B401A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGA1- C241T C1314T C3037T C14408T C15579T G22592T A23403G GGG28881AAC A29430G AAAAAAAAAAAAAAAAA29887-

EPI_ISL_534955
 2020-04-01 2020-09-14
 United Kingdom hCoV-19/England/OXON-B443C/2020
 C241T C3037T C14408T A23403G

EPI_ISL_535001
 2020-04-01 2020-09-14
 United Kingdom hCoV-19/England/OXON-B4C34/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C14408T A23403G G24038T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_535010
 2020-04-01 2020-09-14
 United Kingdom hCoV-19/England/OXON-B4D40/2020
 ATTAAAGGTTTATACCTTCCC1- A2480G C2558T G11083T C14657T C14805T G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_536523
 2020-04-01 2020-09-16
 Peru hCoV-19/Peru/LAM-INS-125/2020
 ATTA1- C241T C2536T C3037T C4002T C10030A G10097A C13536T C14408T A23403G C23731T GGG28881AAC G29179T

EPI_ISL_536524
 2020-04-01 2020-09-16
 Peru hCoV-19/Peru/LAM-INS-126/2020
 ATTAAAG1- C241T C3037T C4002T G10097A C13335T C13536T C14408T A23403G C23731T GGG28881AAC G29179T C29870M

EPI_ISL_536528
 2020-04-01 2020-09-16
 Peru hCoV-19/Peru/JUN-INS-131/2020
 ATTAAAG1- C50T C241T C335T C3037T C14408T C18877T T19839C T22965C A23403G G25563T

EPI_ISL_536562
 2020-04-01 2020-09-16
 Peru hCoV-19/Peru/LAM-INS-169/2020
 ATTAAAG1- C241T C3037T C4002T C6255T G10097A C13536T C14408T A23403G C23731T GGG28881AAC G29179T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_537592
 2020-04-01 2020-09-16
 United States hCoV-19/USA/CA-UCLA-67/2020
 A1- C241T C3037T G7393T C14408T C18877T T22426C A23403G G25563T AA29902-

EPI_ISL_537593
 2020-04-01 2020-09-16
 United States hCoV-19/USA/CA-UCLA-68/2020
 ATTAAAGG1- C2676T C8782T C21575T A22606T G23755T T28144C G28878A G29742A AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_538340
 2020-04-01 2020-09-16
 Canada hCoV-19/Canada/ON-OICR-SLB2812/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25563T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_538341
 2020-04-01 2020-09-16
 Canada hCoV-19/Canada/ON-OICR-SLB2813/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C14408T C16260T A23403G G25563T C26645Y C28821A CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_538342
 2020-04-01 2020-09-16
 Canada hCoV-19/Canada/ON-OICR-SLB2814/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2416T C3037T C14408T A16395G A23403G G23593T G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_538343
 2020-04-01 2020-09-16
 Canada hCoV-19/Canada/ON-OICR-SLB2815/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2416T C3037T C14408T G20679R A23403G G23593T G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_538467
 2020-04-01 2020-09-17
 Singapore hCoV-19/Singapore/217nan/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1913T C6310A C6312A G11083T C13730T C19524T C23929T C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538468
 2020-04-01 2020-09-17
 Singapore hCoV-19/Singapore/935/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T1998A C6310A C6312A G11083T C13730T C17883T C19524T C23929T C28311T C29642T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538791
 2020-04-01 2020-09-17
 United Kingdom hCoV-19/England/LEED-2AA491/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- G2100T A8833G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538832
 2020-04-01 2020-09-17
 United Kingdom hCoV-19/England/LEED-2AA4BF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T844Y C3037T C3373A C14408T C14688T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538979
 2020-04-01 2020-09-17
 United Kingdom hCoV-19/England/LEED-2AA6F5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C5284T C6027T A10236G G11083T C14805T T17247C G22319A G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538983
 2020-04-01 2020-09-17
 United Kingdom hCoV-19/England/LEED-2AA6E6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C850T C1884T C2416T C3037T C14408T A23403G C25508T G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538986
 2020-04-01 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A832D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1884T C2416T C3037T C14408T A23403G C25508T G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538988
 2020-04-01 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A830F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C23575T G23587C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538989
 2020-04-01 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A82D5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C2558T G11083T C14805T G26144T G28851T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538990
 2020-04-01 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A828A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C17104T A23403G G27281T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539068
 2020-04-01 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8C7D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539069
 2020-04-01 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A82A8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1609Y C3037T G11230T C14408T G21724T C22326T A23403G G23587C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539090
 2020-04-01 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8C5F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G C28854T C29608T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539137
 2020-04-01 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8879/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21807A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539171
 2020-04-01 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8563/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G G24197T G25563T C26735T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539203
 2020-04-01 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A84C0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539219
 2020-04-01 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A874F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21807A A23403G C25156T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539306
 2020-04-01 2020-09-17
 Netherlands hCoV-19/env/Netherlands/UT-92848-N/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1997T C3037T C14408T A23403G T23622C CACACAAGGCAGATGGGCTATATAAACGTTTTCGCTTTTCCGTTTACGATATATAGTCTACTCTTGTGCAGAATGAATTCTCGTAACTACATAGCACAAGTAGATGTAGTTAACTTTAATCTCACATAGCAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29546-

EPI_ISL_539308
 2020-04-01 2020-09-17
 Netherlands hCoV-19/env/Netherlands/NH-92852-N1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G TGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29829-

EPI_ISL_539309
 2020-04-01 2020-09-17
 Netherlands hCoV-19/env/Netherlands/NH-92852-N2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1944T C3037T C14408T C16017T A23403G ACAAGGCAGATGGGCTATATAAACGTTTTCGCTTTTCCGTTTACGATATATAGTCTACTCTTGTGCAGAATGAATTCTCGTAACTACATAGCACAAGTAGATGTAGTTAACTTTAATCTCACATAGCAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29549-

EPI_ISL_539317
 2020-04-01 2020-09-17
 Netherlands hCoV-19/env/Netherlands/NH-92851-I/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T A23403G G25489T GGG28881AAC GATGATTTCTCCAAACAATTGCAACAATCCATGAGCAGTGCTGACTCAACTCAGGCCTAAACTCATGCAGACCACACAAGGCAGATGGGCTATATAAACGTTTTCGCTTTTCCGTTTACGATATATAGTCTACTCTTGTGCAGAATGAATTCTCGTAACTACATAGCACAAGTAGATGTAGTTAACTTTAATCTCACATAGCAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29474-

EPI_ISL_539318
 2020-04-01 2020-09-17
 Netherlands hCoV-19/env/Netherlands/NH-92851-N/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T T514C C1059T C3037T G8322T C10929T A23403G G25489T G26803T ACAAGGCAGATGGGCTATATAAACGTTTTCGCTTTTCCGTTTACGATATATAGTCTACTCTTGTGCAGAATGAATTCTCGTAACTACATAGCACAAGTAGATGTAGTTAACTTTAATCTCACATAGCAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29549-

EPI_ISL_539319
 2020-04-01 2020-09-17
 Netherlands hCoV-19/env/Netherlands/NB-92853-I/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A23403G ACAAGGCAGATGGGCTATATAAACGTTTTCGCTTTTCCGTTTACGATATATAGTCTACTCTTGTGCAGAATGAATTCTCGTAACTACATAGCACAAGTAGATGTAGTTAACTTTAATCTCACATAGCAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29549-

EPI_ISL_539320
 2020-04-01 2020-09-17
 Netherlands hCoV-19/env/Netherlands/NB-92853-N/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAGATGGAGAGCCTTGTCCCTGGTTTCAACGAGAAAACACACGTCCAACTCAGTTTGCCTGTTTTACAGGTTCGCGACGTG1- T514C C8266T C13536T C26444T C29520T ACACAAGGCAGATGGGCTATATAAACGTTTTCGCTTTTCCGTTTACGATATATAGTCTACTCTTGTGCAGAATGAATTCTCGTAACTACATAGCACAAGTAGATGTAGTTAACTTTAATCTCACATAGCAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29547-

EPI_ISL_539777
 2020-04-01 2020-09-19
 Czech Republic hCoV-19/Czech Republic/NRL-5751/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C541T C1059T C2488T C3037T G11083K C14408T T17865C A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542571
 2020-04-01 2020-09-23
 United States hCoV-19/USA/TX-HMH-1183/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C9163T C10319T C14408T C16995T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542573
 2020-04-01 2020-09-23
 United States hCoV-19/USA/TX-HMH-1185/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C6040T C8782T C8950T G12478A T18736C C24034T T26729C G28077C T28144C C28896G C29451T A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542582
 2020-04-01 2020-09-23
 United States hCoV-19/USA/TX-HMH-1199/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C11224T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542599
 2020-04-01 2020-09-23
 United States hCoV-19/USA/TX-HMH-1234/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T130C C241T C3037T T5065C C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542692
 2020-04-01 2020-09-23
 United States hCoV-19/USA/TX-HMH-1391/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G18055A G19525T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544456
 2020-04-01 2020-09-24
 United States hCoV-19/USA/TX-HMH-501/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6616G G14118T C14408T G15243T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544465
 2020-04-01 2020-09-24
 United States hCoV-19/USA/TX-HMH-502/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C9962T C10319T C14408T C20698T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544471
 2020-04-01 2020-09-24
 United States hCoV-19/USA/TX-HMH-503/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544479
 2020-04-01 2020-09-24
 United States hCoV-19/USA/TX-HMH-504/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6616G G14118T C14408T G15243T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545240
 2020-04-01 2020-09-24
 United States hCoV-19/USA/TX-HMH-2318/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C11001T C14408T A23403G G25563T G28326T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545867
 2020-04-01 2020-09-24
 United States hCoV-19/USA/TX-HMH-846/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545882
 2020-04-01 2020-09-24
 United States hCoV-19/USA/TX-HMH-865/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A18082G A23403G G25563T C27964T G28655T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546738
 2020-04-01 2020-09-24
 United States hCoV-19/USA/TX-HMH-740/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C7124T C8782T C9561T T18736C C24034T C25433T T26729C C26895T G28077C T28144C A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547494
 2020-04-01 2020-09-24
 Netherlands hCoV-19/Netherlands/NH-RIVM-10061/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T G25769T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547505
 2020-04-01 2020-09-24
 Netherlands hCoV-19/Netherlands/NH-RIVM-10137/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C23248T A23403G C27046T GGG28881AAC T29128C G29751C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547534
 2020-04-01 2020-09-24
 Netherlands hCoV-19/Netherlands/UT-RIVM-10128/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC G29751C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_548364
 2020-04-01 2020-09-26
 United States hCoV-19/USA/CA-CZB-3646/2020
 ATTA1- C241T G443A C3037T C14408T A23403G C28253Y GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_549016
 2020-04-01 2020-09-28
 Netherlands hCoV-19/env/Netherlands/NH-92852-I/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- T104C A23403G GGATGATTTCTCCAAACAATTGCAACAATCCATGAGCAGTGCTGACTCAACTCAGGCCTAAACTCATGCAGACCACACAAGGCAGATGGGCTATATAAACGTTTTCGCTTTTCCGTTTACGATATATAGTCTACTCTTGTGCAGAATGAATTCTCGTAACTACATAGCACAAGTAGATGTAGTTAACTTTAATCTCACATAGCAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29473-

EPI_ISL_549021
 2020-04-01 2020-09-28
 Netherlands hCoV-19/env/Netherlands/UT-92849-N/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAGATGGAGAGCCTTGTCCCTGGTTTCAACGAGAAAACACACGTCCAACTCAGTTTGCCTGTTTTACAGGTTCGCGACGTGC1- A23403G ACAAGGCAGATGGGCTATATAAACGTTTTCGCTTTTCCGTTTACGATATATAGTCTACTCTTGTGCAGAATGAATTCTCGTAACTACATAGCACAAGTAGATGTAGTTAACTTTAATCTCACATAGCAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29549-

EPI_ISL_560743
 2020-04-01 2020-09-29
 United States hCoV-19/USA/MN-MDH-1656/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T T19527C A23403G G25563T C27964T C28099T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_560744
 2020-04-01 2020-09-29
 United States hCoV-19/USA/MN-MDH-1657/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C8782T C17747T A17858G C18060T A24694T T28144C G28812T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_560745
 2020-04-01 2020-09-29
 United States hCoV-19/USA/MN-MDH-1658/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G24368T G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_569463
 2020-04-01 2020-10-02
 France hCoV-19/France/IHU-0337/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1059T C3037T T6082C A10323G C14408T A23403G G25563T CTT27434- AGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29799-

MT380730
 2020-04-01 2020-04-24
 United States SARS-CoV-2/human/USA/VI-CDC-1993/2020
 C241T G2813K C3037T C14408T G16181K G18325T A23403G GGG28881AAC A28911R AAAAAAAAAAAAAAAAAAAAA29883-

MT627924
 2020-04-01 2020-06-16
 United States SARS-CoV-2/human/USA/WA-S587/2020
 ATTAAAGGTTTAT1- G237T C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

MT671828
 2020-04-01 2020-06-26
 United States SARS-CoV-2/human/USA/CA-CZB-1775/2020
 T13Y C241T C3037T C6664T G12514T C14408T A23403G G28703C GGG28881AAC

MT706216
 2020-04-01 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-96/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C829T G6454T C8782T G16381A C16428T T17877C C20316T G25500T C26124T T28144C G28878A G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706247
 2020-04-01 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-254/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C3811T G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT731764
 2020-04-01 2020-07-08
 Morocco SARS-CoV-2/human/MAR/RMPS06/2020
 C241T C1059T C3037T C12970T C14408T A23403G G25563T

MT733120
 2020-04-01 2020-07-08
 Morocco SARS-CoV-2/human/Morocc0/RMPS6/2020
 C241T C1059T C3037T C12970T C14408T A23403G G25563T

MT810506
 2020-04-01 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1497-CS1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- A873G C1059T T1211G C3037T C14408T C21575T A23403G G24985T G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810507
 2020-04-01 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1498-CS1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C12473T C14408T A23403G G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810522
 2020-04-01 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1653-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T A23403G C25254T G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810524
 2020-04-01 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1657-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T T1211G C3037T C14408T A23403G G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810525
 2020-04-01 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1658-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C12473T C14408T A23403G G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810530
 2020-04-01 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1664-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T T1211G C3037T C14408T A23403G G24985T G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810541
 2020-04-01 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1676-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T T1211G C3037T C14408T A23403G G24985T G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810544
 2020-04-01 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1681-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T T1211G C3037T C14408T A23403G G24985T G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810547
 2020-04-01 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1684-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C7932T C12473T C14408T A23403G G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810627
 2020-04-01 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1157-CS1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T G3340T C12473T C14408T C19402T A23403G G25563T C26028T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810635
 2020-04-01 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1166-CS1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C12473T C14408T A23403G G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810639
 2020-04-01 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1171-CS2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C1887T C3037T C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810647
 2020-04-01 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1184-CS1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C12473T C14408T A23403G G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810998
 2020-04-01 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0382-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T A8252G C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811201
 2020-04-01 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0499-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T C16762T A23403G G25563T G29527T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811206
 2020-04-01 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0505-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C11020T C14408T A20268G A23403G T24076C C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811214
 2020-04-01 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0518-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- AAGTCATTT686- C1059T C3037T C14408T A23403G G25563T A26433G CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811698
 2020-04-01 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0268-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C1191T C3037T C10188T C14408T A23403G T24982C G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811700
 2020-04-01 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0270-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T C18115T C21254T A23403G G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811702
 2020-04-01 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0272-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T A23403G G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811703
 2020-04-01 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0273-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C10319T C13119T C14408T A23403G G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811708
 2020-04-01 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0278-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T G6362A C10188T C14408T A23403G T24982C G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811710
 2020-04-01 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0280-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C10188T C14408T A23403G T24982C G25563T C25886T C27509T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811712
 2020-04-01 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0282-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C10188T C14408T A23403G T24982C G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811714
 2020-04-01 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0284-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C10319T C14408T G21898A A23403G G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811715
 2020-04-01 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0285-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C10319T C14408T G22708T A23403G G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811720
 2020-04-01 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0290-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T G2900A C3037T C10319T C14408T A23403G G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT873104
 2020-04-01 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00017/2020
 C241T C2416T C3037T A5725G C14408T C16887T A23403G C24096A G25563T

MT873105
 2020-04-01 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00020/2020
 G105T C241T C3037T C14408T C18877T A23403G G25563T

MT873123
 2020-04-01 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00018/2020
 G105T C241T C3037T C14408T C18877T A23403G G25563T

MT873218
 2020-04-01 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00019/2020
 C241T C2416T C3037T A5725G C14408T C16887T A23403G C24096A G25563T

MT873413
 2020-04-01 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00016/2020
 ATTAAA1- G105T C241T C3037T C14408T C18877T A23403G G25563T

MT877300
 2020-04-01 2020-08-12
 United States SARS-CoV-2/human/USA/Yale-253/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT877302
 2020-04-01 2020-08-12
 United States SARS-CoV-2/human/USA/Yale-255/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT877304
 2020-04-01 2020-08-12
 United States SARS-CoV-2/human/USA/Yale-257/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4234T G7312A G7331A C8619T C9994T G11150A C14408T C17470T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT877305
 2020-04-01 2020-08-12
 United States SARS-CoV-2/human/USA/Yale-258/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C11916T C14408T C16376T C18998T A23403G G25563T G29540A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT877306
 2020-04-01 2020-08-12
 United States SARS-CoV-2/human/USA/Yale-260/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T9070C T10960C C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MW023935
 2020-04-01 2020-09-21
 Peru SARS-CoV-2/human/PER/cov001/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGT1- C241T C442T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC C29675- ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

MW030193
 2020-04-01 2020-09-22
 Peru SARS-CoV-2/human/PER/covper049/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGT1- C241T C2536T C3037T C4002T C10030A G10097A C13536T C14408T A23403G C23731T GGG28881AAC G29179T C29675- ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

MW030194
 2020-04-01 2020-09-22
 Peru SARS-CoV-2/human/PER/covper050/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGT1- C241T C3037T C4002T G10097A C13335T C13536T C14408T A23403G C23731T GGG28881AAC G29179T C29675- ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

MW030198
 2020-04-01 2020-09-22
 Peru SARS-CoV-2/human/PER/covper055/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGT1- C241T C335T C3037T C14408T C18877T T19839C T22965C A23403G G25563T C29675- ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

MW030229
 2020-04-01 2020-09-22
 Peru SARS-CoV-2/human/PER/covper093/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGT1- C241T C3037T C4002T C6255T G10097A C13536T C14408T A23403G C23731T GGG28881AAC G29179T C29675- ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

MW047085
 2020-04-01 2020-09-13
 United States SARS-CoV-2/human/USA/UF-6/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C14408T C17172T T18168C A23403G G25563T GAATGATT27754-

MW047309
 2020-04-01 2020-09-29
 United States SARS-CoV-2/human/USA/WRCEVA_000505/2020
 C241T C1059T C3037T T10213C C10319T C14408T T17137C A23403G G25563T C27964T

MW047310
 2020-04-01 2020-09-29
 United States SARS-CoV-2/human/USA/WRCEVA_000506/2020
 T168C C241T C3037T C14408T A23403G C24797T

MW047311
 2020-04-01 2020-09-29
 United States SARS-CoV-2/human/USA/WRCEVA_000507/2020
 C241T C1059T C3037T C14408T A23403G G25563T

MW047312
 2020-04-01 2020-09-29
 United States SARS-CoV-2/human/USA/WRCEVA_000508/2020
 T490A C3177T C6040T C6843T C8782T C8950T G12478A T18736C C24034T T26729C C26801T G28077C T28144C C28896G C29451T A29700G

MW047313
 2020-04-01 2020-09-29
 United States SARS-CoV-2/human/USA/WRCEVA_000509/2020
 C241T C1059T C3037T C14408T A18082G A23403G G25563T A27357G C27964T

MW047314
 2020-04-01 2020-09-29
 United States SARS-CoV-2/human/USA/WRCEVA_000510/2020
 T168C C241T C3037T C14408T A23403G C24797T

MW047318
 2020-04-01 2020-09-29
 United States SARS-CoV-2/human/USA/WRCEVA_000516/2020
 C241T C1059T C3037T C10319T C14408T A23403G G25563T C27964T C28531T

NMDC60013230
 2020-04-01 2020-06-01
 China hCoV-19/Guangzhou/ID113/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C15752T A21315T A23403G G25563T GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_420293 MT365033
 2020-04-02 2020-04-20
 United States SARS-CoV-2/tiger/NY/040420/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_422459
 2020-04-02 2020-04-10
 United States hCoV-19/USA/WI-GMF-00557/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_422616 LR878057
 2020-04-02 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_307/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18788T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422621 LR878068
 2020-04-02 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_312/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7095T C14408T A16179G A23403G GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422623 LR878071
 2020-04-02 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_314/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2094T C3037T C14408T C20148T A23403G C27213T G29422T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422625 LR878067
 2020-04-02 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_316/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18788T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422626 LR878070
 2020-04-02 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_317/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G20275A A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_423591
 2020-04-02 2020-04-12
 United Kingdom hCoV-19/England/20148043704/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_425142
 2020-04-02 2020-04-14
 United States hCoV-19/USA/WI-UW-85/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11417T T14073C C14408T A23403G A23947G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425143
 2020-04-02 2020-04-14
 United States hCoV-19/USA/WI-UW-86/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425144
 2020-04-02 2020-04-14
 United States hCoV-19/USA/WI-UW-87/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C7945T CC14407TT A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425156
 2020-04-02 2020-04-14
 United States hCoV-19/USA/WI-UW-99/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T15354C C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_426471 MT350253
 2020-04-02 2020-04-17
 United States SARS-CoV-2/human/USA/VA-DCLS-0064/2020
 ATTA1- C241T C1059T C3037T C14408T A23403G G24755T G25563T

EPI_ISL_426568
 2020-04-02 2020-04-17
 United States hCoV-19/USA/AZ-TG273316/2020
 C241T C3037T C9534A C14408T C18877T A23403G G25563T C26985T G29742A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426569
 2020-04-02 2020-04-17
 United States hCoV-19/USA/AZ-TG273318/2020
 C241T C3037T C9534A C14408T C18877T A23403G G25563T G29742A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426889 MT517426
 2020-04-02 2020-04-17
 Czech Republic SARS-CoV-2/human/CZE/IAB_14/2020
 ATTAAAGGTTT1- G160A C241T C3037T C14408T C22432T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_427085 MT641708
 2020-04-02 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC812/2020
 G1397A C1909T G11083T C19170T T28688C C29037T G29374A G29742T

EPI_ISL_427314
 2020-04-02 2020-04-18
 Russia hCoV-19/Russia/StPetersburg-RII4546V/2020
 C241T C3037T C14184T C14408T A20268G A23403G G28089A

EPI_ISL_427619
 2020-04-02 2020-04-19
 United States hCoV-19/USA/AK-PHL092/2020
 ATTAAAGGTTTATA1- C241T T1978A C3037T C6504T C12781T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_428729
 2020-04-02 2020-04-21
 United States hCoV-19/USA/WI-UW-255/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T A12110G G16381A T17877C C20316T G25500T C26192T G26211T T28144C G28878A G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428851
 2020-04-02 2020-04-22
 Russia hCoV-19/Russia/Moscow-25I/2020
 C241T C3037T C3373A C14408T A23403G GGG28881AAC

EPI_ISL_428852
 2020-04-02 2020-04-22
 Russia hCoV-19/Russia/Moscow-35I/2020
 C241T C3037T C10969T C14408T A23403G GGG28881AAC

EPI_ISL_428960
 2020-04-02 2020-04-22
 Luxembourg hCoV-19/Luxembourg/LNS6326231/2020
 C241T C3037T G4255T C13517T C14408T A23403G A26530G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_429128
 2020-04-02 2020-04-23
 Sweden hCoV-19/Sweden/20-08680/2020
 C207T C241T C1059T C3037T TGAAAATT3670- A23403G G24368T G25563T

EPI_ISL_429135
 2020-04-02 2020-04-23
 Sweden hCoV-19/Sweden/20-08719/2020
 C241T C3037T C8140T C14408T A20268G A23403G

EPI_ISL_429218
 2020-04-02 2020-04-23
 Switzerland hCoV-19/Switzerland/GE0304/2020
 ATTAAA1- C241T C3037T C14408T A20268G A23403G C26340T C28854T

EPI_ISL_429649 MT375476
 2020-04-02 2020-04-23
 United States SARS-CoV-2/human/USA/WA-UW-5144/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATA1- G1148T C8782T C17326T C17747T A17858G A17884G C18060T G19645T T28144C G29747T -29904AAAAAAAAAAAA

EPI_ISL_429650 MT375477
 2020-04-02 2020-04-23
 United States SARS-CoV-2/human/USA/WA-UW-5152/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAA1- C8782T C17326T C17747T A17858G A17884G C18060T G19645T T28144C C29762T -29904AAAAA

EPI_ISL_429651 MT375478
 2020-04-02 2020-04-23
 United States SARS-CoV-2/human/USA/WA-UW-5158/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- AAC34HTT C241T C1059T C3037T C14408T A23403G G25563T G29553A A29903-

EPI_ISL_429653 MT375480
 2020-04-02 2020-04-23
 United States SARS-CoV-2/human/USA/WA-UW-5166/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TH C241T C1059T C3037T C14408T A23403G G25563T G29553A

EPI_ISL_429654 MT375481
 2020-04-02 2020-04-23
 United States SARS-CoV-2/human/USA/WA-UW-5169/2020
 ATTAAA1- C241T C1059T C3037T C14408T A23403G G25563T C27630T G29553A -29904AA

EPI_ISL_429655 MT375482
 2020-04-02 2020-04-23
 United States SARS-CoV-2/human/USA/WA-UW-5170/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- C36T C241T C1059T C3037T C14408T C16375T A23403G G25563T G29553A -29904AAAA

EPI_ISL_429656 MT375483
 2020-04-02 2020-04-23
 United States SARS-CoV-2/human/USA/UNKNOWN-UW-5172/2020
 ATTAAAG1- C36T C241T C1059T C3037T C14408T G20134T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_429984 MT415907
 2020-04-02 2020-04-24
 United States SARS-CoV-2/human/USA/VA-DCLS-0087/2020
 ATT1- C241T C2416T C3037T G4523A C10712T C14408T A23403G G25563T C29870M

EPI_ISL_429985 MT415908
 2020-04-02 2020-04-24
 United States SARS-CoV-2/human/USA/VA-DCLS-0088/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C2416T C3037T G4523A C10712T C14408T A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_429986 MT415909
 2020-04-02 2020-04-24
 United States SARS-CoV-2/human/USA/VA-DCLS-0089/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C274A C2416T C3037T G4523A C10712T C14408T A23403G G25563T C29409T

EPI_ISL_429987 MT415910
 2020-04-02 2020-04-24
 United States SARS-CoV-2/human/USA/VA-DCLS-0090/2020
 ATTAAAGGTTTA1- C241T C2416T C3037T G4523A C10712T C14408T A23403G G25563T C29870A

EPI_ISL_429988 MT415911
 2020-04-02 2020-04-24
 United States SARS-CoV-2/human/USA/VA-DCLS-0091/2020
 ATTAAAGGTT1- C241T C3037T C6070T C14408T C18877T A23403G C24023T G25563T C25603T

EPI_ISL_430350
 2020-04-02 2020-04-26
 United States hCoV-19/USA/NY-NYUMC323/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27549T

EPI_ISL_430355
 2020-04-02 2020-04-26
 United States hCoV-19/USA/NY-NYUMC328/2020
 C241T C1059T C3037T C14408T A23403G C24133T G25563T

EPI_ISL_430356
 2020-04-02 2020-04-26
 United States hCoV-19/USA/NJ-NYUMC329/2020
 C241T C1059T C3037T C14408T T23032C A23403G G25563T C26464T

EPI_ISL_430807
 2020-04-02 2020-04-27
 Argentina hCoV-19/Argentina/PAIS_A016/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATC1- C241T C3037T C14408T A23403G C24130T A25454G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_430858
 2020-04-02 2020-04-28
 Sweden hCoV-19/Sweden/20-08714/2020
 C241T C1059T C1302T C3037T T6853C T8647C C14408T A23403G G25563T

EPI_ISL_430859
 2020-04-02 2020-04-28
 Sweden hCoV-19/Sweden/20-08717/2020
 C241T C1059T T1711A C3037T C14408T C19610T A23403G G24368T G24781T G25563T T27348C

EPI_ISL_430871 MT412227
 2020-04-02 2020-04-28
 United States SARS-CoV-2/human/USA/WA-UW-5181/2020
 ATTAAAGGTTTA1- AACC34HTTH C241T C1059T C3037T C14408T A23403G G25563T C29724T

EPI_ISL_430872 MT412228
 2020-04-02 2020-04-28
 United States SARS-CoV-2/human/USA/WA-UW-5182/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C1385T C4320T C8782T C17747T A17858G C18060T C23673T C24382T T28144C -29904AAAAAAA

EPI_ISL_430897 MT412254
 2020-04-02 2020-04-28
 United States SARS-CoV-2/human/USA/UNKNOWN-UW-5199/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C241T C1059T C3037T C14408T C18129T A23403G G25563T G29553A AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_430898 MT412255
 2020-04-02 2020-04-28
 United States SARS-CoV-2/human/USA/WA-UW-5200/2020
 ATTAAAGGTTTATACCTTCCCA1- A31T AAC34TTT C241T C1059T C1437T C3037T C6040T C11036T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_430900 MT412257
 2020-04-02 2020-04-28
 United States SARS-CoV-2/human/USA/WA-UW-5205/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C36T C4320T C8782T C17747T A17858G C18060T C23673T C24382T T28144C AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_430959 MT412316
 2020-04-02 2020-04-28
 United States SARS-CoV-2/human/USA/WA-UW-6243/2020
 ATTAAAGGTTTA1- A31T C36T C241T C313T C3037T C3096T C14408T A23403G GGG28881AAC CAGTG29762- -29904AAAAAAAAAAAAAAAA

EPI_ISL_430964 MT412321
 2020-04-02 2020-04-28
 United States SARS-CoV-2/human/USA/WA-UW-6302/2020
 AT1- C36T C241T C527T C1059T C3037T C6548T A11595G C14408T A23403G G24348T G25563T G29553A AAAAAAAAAAAAAAAAAA29886-

EPI_ISL_430967 MT412324
 2020-04-02 2020-04-28
 United States SARS-CoV-2/human/USA/WA-UW-6327/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A31T C36T C241T C1059T C3037T C5240G C14408T A23403G G25563T C26625T -29865AAAAAAA TG29867AA C29870A

EPI_ISL_430971 MT412328
 2020-04-02 2020-04-28
 United States SARS-CoV-2/human/USA/CT-UW-6362/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- CC32TT C36T C241T C1059T C3037T C14408T A23403G G25563T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_432209
 2020-04-02 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-27A41/2020
 G1440A G2891A C18312T T25051C G28851T

EPI_ISL_432622
 2020-04-02 2020-04-29
 United Kingdom hCoV-19/England/SHEF-D1053/2020
 C241T C3037T C14408T G22427A A23403G G27441T GGG28881AAC

EPI_ISL_432630
 2020-04-02 2020-04-29
 United Kingdom hCoV-19/England/SHEF-D1536/2020
 T4922C G11083T C14805T G26144T

EPI_ISL_432993
 2020-04-02 2020-04-29
 United Kingdom hCoV-19/England/NOTT-10F343/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_432998
 2020-04-02 2020-04-29
 United Kingdom hCoV-19/England/NOTT-10F3CB/2020
 C241T C3037T C14408T A23403G C26681T GGG28881AAC

EPI_ISL_433000
 2020-04-02 2020-04-29
 United Kingdom hCoV-19/England/NOTT-10F3E9/2020
 C2558T G11083T A13922T C14805T T19731C G26144T

EPI_ISL_433002
 2020-04-02 2020-04-29
 United Kingdom hCoV-19/England/NOTT-10F413/2020
 A1515G C9223T G11083T C14805T T17247C G26144T

EPI_ISL_433012
 2020-04-02 2020-04-29
 United Kingdom hCoV-19/England/NOTT-10F4F5/2020
 C241T C3037T C14408T T15351G T19449C G21518T A23403G G23867A

EPI_ISL_433016
 2020-04-02 2020-04-29
 United Kingdom hCoV-19/England/NOTT-10F53E/2020
 C241T C3037T A8072G C14408T A23403G GGG28881AAC

EPI_ISL_433204
 2020-04-02 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB582/2020
 C7423T

EPI_ISL_433205
 2020-04-02 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB587/2020
 C241T C3037T C14408T C16289T A23403G G25429T

EPI_ISL_433206
 2020-04-02 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB588/2020
 C241T C3037T C11878T C14408T C16289T G16741T C17375T C18508T A23403G G25429T

EPI_ISL_433215
 2020-04-02 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB612/2020
 C241T C3037T C14408T G15439A A23403G G25429T G25687T C28737T

EPI_ISL_433228
 2020-04-02 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB721/2020
 C2091T G7393T A10323G G11083T C14805T T17247C G26144T

EPI_ISL_433229
 2020-04-02 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB726/2020
 C241T C3037T C14408T C21549T A23403G GGG28881AAC

EPI_ISL_433233
 2020-04-02 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB734/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_433234
 2020-04-02 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB735/2020
 C512T A1900G G11083T C14805T T17247C G26144T

EPI_ISL_433237
 2020-04-02 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB764/2020
 C241T C3037T C14408T A23403G C25433T C27577T

EPI_ISL_433581
 2020-04-02 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR1429/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C12710T C15613T C28854T G29315T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_433587
 2020-04-02 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR1438/2020
 C241T C3037T C14408T G17278T A23403G G25429T

EPI_ISL_433598
 2020-04-02 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR1474/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_433675
 2020-04-02 2020-04-29
 United Kingdom hCoV-19/England/CAMB-73BF8/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_433676
 2020-04-02 2020-04-29
 United Kingdom hCoV-19/England/CAMB-73C04/2020
 A2480G C2558T G11083T C14805T C15194T A22300C G26144T C27406T

EPI_ISL_433677
 2020-04-02 2020-04-29
 United Kingdom hCoV-19/England/CAMB-73C13/2020
 C241T C3037T C14408T C19328T A23403G C25350T

EPI_ISL_433678
 2020-04-02 2020-04-29
 United Kingdom hCoV-19/England/CAMB-73C31/2020
 C241T C3037T C3373A C3923A C11195T C14408T A23403G GGG28881AAC

EPI_ISL_433679
 2020-04-02 2020-04-29
 United Kingdom hCoV-19/England/CAMB-73C40/2020
 C241T C3037T C14408T C19328T A23403G C25350T

EPI_ISL_433680
 2020-04-02 2020-04-29
 United Kingdom hCoV-19/England/CAMB-73C5F/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_433681
 2020-04-02 2020-04-29
 United Kingdom hCoV-19/England/CAMB-73C7D/2020
 C241T C3037T C10755T C14408T A23403G GGG28881AAC

EPI_ISL_433682
 2020-04-02 2020-04-29
 United Kingdom hCoV-19/England/CAMB-73C9B/2020
 C241T C3037T C14408T A23403G C25521T G28514T

EPI_ISL_433683
 2020-04-02 2020-04-29
 United Kingdom hCoV-19/England/CAMB-73CAA/2020
 C241T C3037T C14408T A23403G G28514T

EPI_ISL_433685
 2020-04-02 2020-04-29
 United Kingdom hCoV-19/England/CAMB-73CD7/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_433686
 2020-04-02 2020-04-29
 United Kingdom hCoV-19/England/CAMB-73D01/2020
 C241T C1059T C3037T C9286T C14408T A23403G G25563T G28899C

EPI_ISL_433695
 2020-04-02 2020-04-29
 United Kingdom hCoV-19/England/CAMB-73D98/2020
 C241T T1294C C3037T C14408T ATT22194- A23403G A23779G C26527T GGG28881AAC -29686C

EPI_ISL_434066 MT632977
 2020-04-02 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S306/2020
 C8782T T11320C C17747T A17858G C18060T T28144C

EPI_ISL_434068 MT632930
 2020-04-02 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S308/2020
 G1401A T7818C C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434073 MT633029
 2020-04-02 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S313/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434075 MT632961
 2020-04-02 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S315/2020
 G1401A C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434083 MT632882
 2020-04-02 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S323/2020
 C241T C1059T C3037T G7560A C14408T G19999T G21452T A23403G G25563T

EPI_ISL_434090 MT633008
 2020-04-02 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S330/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434091 MT632828
 2020-04-02 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S331/2020
 A6693G C8782T T9127C C14877T C17747T A17858G C18060T T28144C C28519T A29188T

EPI_ISL_434092 MT632789
 2020-04-02 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S332/2020
 C241T C379A C1059T T2244C C3037T T3766C G10753T C14408T C20759T A23403G G25563T C27509T

EPI_ISL_434095 MT633017
 2020-04-02 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S335/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434098 MT632794
 2020-04-02 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S338/2020
 C241T C1059T C3037T G7560A C14408T G19999T G21452T A23403G G25563T C25889T C29253T

EPI_ISL_434099 MT632771
 2020-04-02 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S339/2020
 C241T C1059T C3037T A3421G G3955T G7560A C14408T G19999T G21452T A23403G G25563T

EPI_ISL_434102 MT632966
 2020-04-02 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S342/2020
 C8782T C17747T A17858G C18060T G28001T T28144C

EPI_ISL_434103 MT632776
 2020-04-02 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S343/2020
 T490A C3177T A3398G C8683T C8782T T18736C C24034T T26729C C27635T G28077C T28144C A29700G

EPI_ISL_434104 MT632827
 2020-04-02 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S344/2020
 C241T C1059T C3037T G7560A C14408T G19999T G21452T A23403G G25563T

EPI_ISL_434109 MT632817
 2020-04-02 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S349/2020
 G127T C8782T T10881C C17747T A17858G C18060T A27317G C28093T T28144C

EPI_ISL_434110 MT632784
 2020-04-02 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S350/2020
 C241T C527T C1059T C3037T G7560A C14408T G19999T G21452T A23403G G25563T C29253T

EPI_ISL_434199 MT632790
 2020-04-02 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S439/2020
 C5730T A6693G C8782T C14877T C17747T A17858G C18060T A22356G T28144C C28519T A29188T

EPI_ISL_434217 MT632853
 2020-04-02 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S457/2020
 C241T C1059T C3037T G7560A C14408T G19999T G21452T A23403G G25563T

EPI_ISL_434222 MT632796
 2020-04-02 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S462/2020
 C241T C1059T C3037T C5869T G7560A C14408T C18252T G19999T G21452T A23403G G25563T

EPI_ISL_434227 MT632887
 2020-04-02 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S467/2020
 C8782T G15769A C17747T A17858G C18060T C25886T T28144C

EPI_ISL_434244 MT632766
 2020-04-02 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S484/2020
 C5301T T6178C A6693G C8782T C14877T C17747T A17858G C18060T C18652T T28144C C28519T A29188T

EPI_ISL_434249 MT632894
 2020-04-02 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S489/2020
 C8782T G12268A A13712G C17747T A17858G C18060T T28144C

EPI_ISL_434251 MT632788
 2020-04-02 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S491/2020
 C5730T A6693G C8782T C14877T C17747T A17858G C18060T T28144C C28519T A29188T G29616A

EPI_ISL_434369
 2020-04-02 2020-04-29
 Belgium hCoV-19/Belgium/ITM_C262/2020
 C241T C3037T C14408T A23356T C23393T A23403G

EPI_ISL_434942
 2020-04-02 2020-05-01
 United States hCoV-19/USA/TX-HMH348/2020
 C241T C1059T C3037T C4931A C14408T C23191T A23403G G25563T

EPI_ISL_435010
 2020-04-02 2020-05-01
 United States hCoV-19/USA/TX-HMH427/2020
 C302T T490A C3177T C6040T C8782T C8950T G12478A T18736C C21575T C21627T C24034T T26729C T27428C G28077C T28144C C28896G C29451T A29700G

EPI_ISL_435011
 2020-04-02 2020-05-01
 United States hCoV-19/USA/TX-HMH428/2020
 C302T T490A C3177T C6040T C8782T C8950T G12478A T18736C C21627T C24034T T26729C T27428C G28077C T28144C C28896G C29451T A29700G

EPI_ISL_435012
 2020-04-02 2020-05-01
 United States hCoV-19/USA/TX-HMH429/2020
 C241T C1059T C3037T C10319T C14408T A23403G G25563T C27964T

EPI_ISL_435014
 2020-04-02 2020-05-01
 United States hCoV-19/USA/TX-HMH431/2020
 T490A C3177T C6040T C8782T C8950T G12478A T18736C G20005A C24034T T26729C G28077C T28144C C28896G C29451T A29700G

EPI_ISL_435015
 2020-04-02 2020-05-01
 United States hCoV-19/USA/TX-HMH432/2020
 T490A C3177T C6040T C8782T C8950T G12478A T18736C G20005A C24034T T26729C G28077C T28144C C28896G C29451T A29700G

EPI_ISL_435016
 2020-04-02 2020-05-01
 United States hCoV-19/USA/TX-HMH433/2020
 C241T C1059T C3037T C14408T C15720T A23403G G25563T

EPI_ISL_435017
 2020-04-02 2020-05-01
 United States hCoV-19/USA/TX-HMH434/2020
 C241T C3037T C14408T A17817G A23403G

EPI_ISL_435018
 2020-04-02 2020-05-01
 United States hCoV-19/USA/TX-HMH435/2020
 T490A C3177T C6040T C8782T C8950T G12478A T18736C C24034T T26729C G28077C T28144C C28896G C29451T A29700G

EPI_ISL_435019
 2020-04-02 2020-05-01
 United States hCoV-19/USA/TX-HMH436/2020
 C241T C1059T C3037T C10188T C11962T C14408T A23403G C24642T T24982C G25563T C27964T

EPI_ISL_435020
 2020-04-02 2020-05-01
 United States hCoV-19/USA/TX-HMH437/2020
 C241T C3037T C14408T A23403G C28045T

EPI_ISL_435021
 2020-04-02 2020-05-01
 United States hCoV-19/USA/TX-HMH438/2020
 C241T C1059T C3037T C3784T C14408T A23403G G25563T

EPI_ISL_435022
 2020-04-02 2020-05-01
 United States hCoV-19/USA/TX-HMH439/2020
 C241T C1059T T2153C C3037T C10319T C14408T G18105T A23403G G25522A G25563T C27964T

EPI_ISL_435418
 2020-04-02 2020-05-04
 Hungary hCoV-19/Hungary/SRC-01136/2020
 C241T C3037T A11736G C14408T A20268G A21137G A23403G

EPI_ISL_435456
 2020-04-02 2020-05-05
 United States hCoV-19/USA/LA-SR0153/2020
 C241T C1059T C3037T C14408T A23403G C25006T G25563T

EPI_ISL_435458
 2020-04-02 2020-05-05
 United States hCoV-19/USA/LA-SR0155/2020
 C241T C1059T C3037T C10319T C14408T A23403G CGATAC25493- G25563T T27322G C27964T

EPI_ISL_435459
 2020-04-02 2020-05-05
 United States hCoV-19/USA/LA-SR0156/2020
 C241T C1059T T2845C C3037T G3871T C14408T G17278T A23403G G25563T C27964T

EPI_ISL_435460
 2020-04-02 2020-05-05
 United States hCoV-19/USA/LA-SR0157/2020
 C241T C1059T C3037T C10319T C14408T G15372T A23403G G25563T C27964T

EPI_ISL_435462
 2020-04-02 2020-05-05
 United States hCoV-19/USA/LA-SR0159/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T

EPI_ISL_436099
 2020-04-02 2020-05-06
 Taiwan hCoV-19/Taiwan/TSGH-24/2020
 C241T C3037T C14408T C14585T T23272C A23403G

EPI_ISL_436108
 2020-04-02 2020-05-06
 Taiwan hCoV-19/Taiwan/TSGH-23/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_436571 MT706385
 2020-04-02 2020-05-06
 United States SARS-CoV-2/human/USA/WI-UW-277/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A7929G C9195T C14408T T15354C C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_436635 MT706447
 2020-04-02 2020-05-06
 United States SARS-CoV-2/human/USA/WI-UW-341/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T15354C C18877T A21137G A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_436962
 2020-04-02 2020-05-08
 Denmark hCoV-19/Denmark/ALAB-SSI-1126/2020
 C241T C1059T C3037T C14408T A23403G G25563T C29769T

EPI_ISL_437201
 2020-04-02 2020-05-08
 Austria hCoV-19/Austria/Graz-MUG5/2020
 C241T C14408T A23403G

EPI_ISL_437239
 2020-04-02 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0040/2020
 C241T C3037T C14408T G19825T A23403G G25395T GGG28881AAC

EPI_ISL_437283
 2020-04-02 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0089/2020
 C241T C3037T G11083T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_437364
 2020-04-02 2020-05-08
 United States hCoV-19/USA/MN-MDH-336/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C8782T G14350T C17747T A17858G C18060T A24694T T28144C G28812T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_437576
 2020-04-02 2020-05-11
 United States hCoV-19/USA/CA-SR0224/2020
 G1401A A5405G G8131T C8782T C17747T A17858G C18060T T28144C

EPI_ISL_437631
 2020-04-02 2020-05-11
 Denmark hCoV-19/Denmark/ALAB-SSI-1065/2020
 C241T C1059T C1302T C3037T C6330T C14408T C15120A A23403G G23624T G25563T C28253T

EPI_ISL_437632
 2020-04-02 2020-05-11
 Denmark hCoV-19/Denmark/ALAB-SSI-1086/2020
 C241T C3037T C7834T C14408T C22096T A23403G

EPI_ISL_437637
 2020-04-02 2020-05-11
 Denmark hCoV-19/Denmark/ALAB-SSI-1230/2020
 C241T C1059T C1302T C2062T C3037T C8956T C14408T A23403G G25563T

EPI_ISL_437639
 2020-04-02 2020-05-11
 Denmark hCoV-19/Denmark/ALAB-SSI-1280/2020
 C241T C1059T C3037T C6539T C14408T A23403G G25563T

EPI_ISL_437643
 2020-04-02 2020-05-11
 Denmark hCoV-19/Denmark/ALAB-SSI-1334/2020
 C241T C1059T C1869T C3037T C14408T A23403G G25563T

EPI_ISL_437644
 2020-04-02 2020-05-11
 Denmark hCoV-19/Denmark/ALAB-SSI-1337/2020
 C241T G252T C1059T C3037T T10692C C14408T C15720T A23403G G25563T

EPI_ISL_437645
 2020-04-02 2020-05-11
 Denmark hCoV-19/Denmark/ALAB-SSI-1348/2020
 C241T C1059T C3037T C9803T C14408T A23403G G25563T

EPI_ISL_437646
 2020-04-02 2020-05-11
 Denmark hCoV-19/Denmark/ALAB-SSI-1351/2020
 C241T C1059T C1302T C3037T C14408T A23403G G25563T G28812T

EPI_ISL_437761
 2020-04-02 2020-05-11
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Makkah90/2020
 T694A A5321G C8782T G22468T T28144C G28878A C29530T G29742A

EPI_ISL_437762
 2020-04-02 2020-05-11
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Makkah97/2020
 C84T C241T C3037T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_437830 MT461631
 2020-04-02 2020-05-11
 United States SARS-CoV-2/human/USA/ID-UW-6446/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T T833C C1059T C2523T C3037T C14408T A23403G G25563T C27964T C29625T G29868A C29870-

EPI_ISL_437831 MT461632
 2020-04-02 2020-05-11
 United States SARS-CoV-2/human/USA/ID-UW-6448/2020
 ATTAAAGGTTTA1- AC35WT C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T G28027C CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_437835 MT461635
 2020-04-02 2020-05-11
 United States SARS-CoV-2/human/USA/ID-UW-6466/2020
 ATTAAAGGTTTATACCTTCCCAG1- A31T C36T C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T G29543T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_437836 MT461636
 2020-04-02 2020-05-11
 United States SARS-CoV-2/human/USA/ID-UW-6467/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCT1- C241T T833C C1059T C3037T C7029T C14408T A23403G G25563T C27964T AGTGTAC29756- G29864R TG29867AA C29870A

EPI_ISL_437837 MT461637
 2020-04-02 2020-05-11
 United States SARS-CoV-2/human/USA/ID-UW-6472/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTG1- C241T T833C C1059T C3037T C10965T C14408T A23403G G25563T C27964T A29903-

EPI_ISL_437838 MT461638
 2020-04-02 2020-05-11
 United States SARS-CoV-2/human/USA/ID-UW-6473/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T TG29867AA C29870A

EPI_ISL_437865 MT461662
 2020-04-02 2020-05-11
 United States SARS-CoV-2/human/USA/CT-UW-6564/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACA1- C241T C619T G626A C1059T C3037T C14408T A14912G A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_437866 MT461663
 2020-04-02 2020-05-11
 United States SARS-CoV-2/human/USA/CT-UW-6565/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- AAC34WWT C241T C3037T C14408T A23403G G28851T GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_437868 MT461664
 2020-04-02 2020-05-11
 United States SARS-CoV-2/human/USA/CT-UW-6569/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA G105T C241T C3037T C14408T C18877T G19962A A23403G A24123G G25563T G28090C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_437870 MT461666
 2020-04-02 2020-05-11
 United States SARS-CoV-2/human/USA/CT-UW-6573/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C241T C1059T C3037T C6026T C14408T A23403G G25563T C28836T

EPI_ISL_437872 MT461668
 2020-04-02 2020-05-11
 United States SARS-CoV-2/human/USA/CT-UW-6576/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- AAC34TTT C241T C1059T C3037T C11916T C14408T C18252T A23403G G25563T -29904AAAAA

EPI_ISL_438122
 2020-04-02 2020-05-12
 Austria hCoV-19/Austria/CeMM0359/2020
 C241T C3037T C14408T T22521K A23403G C24621T C27046T GGG28881AAC AAAAAAAAA29895-

EPI_ISL_438126
 2020-04-02 2020-05-12
 Austria hCoV-19/Austria/CeMM0363/2020
 C241T C3037T C12073T C14408T A23403G C24642T C27046T G28395T GGG28881AAC AAAAAAAAAAAAA29891-

EPI_ISL_438141
 2020-04-02 2020-05-12
 United States hCoV-19/USA/WA-S588/2020
 C8782T A13712G C17747T C17766T A17858G C18060T T28144C

EPI_ISL_438806
 2020-04-02 2020-05-12
 United Kingdom hCoV-19/Scotland/CVR1427/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_438824
 2020-04-02 2020-05-12
 United Kingdom hCoV-19/Scotland/CVR1484/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- T13345C C17999T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_440566
 2020-04-02 2020-05-12
 United Kingdom hCoV-19/England/CAMB-7A3EA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_440579
 2020-04-02 2020-05-12
 United Kingdom hCoV-19/England/CAMB-78DEE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G5554T C14408T A23403G G24368T C25463A G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_440593
 2020-04-02 2020-05-12
 United Kingdom hCoV-19/England/CAMB-7A46F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1684T C3037T A3523G C4002T G10097A C13536T C14184T C14408T C21058T A23403G C23731T GGG28881AAC GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_440621
 2020-04-02 2020-05-12
 United Kingdom hCoV-19/England/CAMB-79B89/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G T25202K GGG28881AAC

EPI_ISL_440729
 2020-04-02 2020-05-12
 United Kingdom hCoV-19/England/BRIS-122939/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C835Y G1697K C3037T C4832Y A11782G C14408T G22203T A23403G T25202K TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_440960
 2020-04-02 2020-05-12
 United Kingdom hCoV-19/England/LOND-D35BC/2020
 C241T C3037T C14408T A23403G A26530G

EPI_ISL_440962
 2020-04-02 2020-05-12
 United Kingdom hCoV-19/England/LOND-D35E9/2020
 C241T C1059T C1437T C3037T T3745C T13006C C14408T A23403G G25563T

EPI_ISL_440964
 2020-04-02 2020-05-12
 United Kingdom hCoV-19/England/LOND-D3604/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_440965
 2020-04-02 2020-05-12
 United Kingdom hCoV-19/England/LOND-D3613/2020
 C241T C913T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_440966
 2020-04-02 2020-05-12
 United Kingdom hCoV-19/England/LOND-D3622/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_440967
 2020-04-02 2020-05-12
 United Kingdom hCoV-19/England/LOND-D3631/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T

EPI_ISL_440968
 2020-04-02 2020-05-12
 United Kingdom hCoV-19/England/LOND-D3640/2020
 C241T C3037T C14408T C16289T C17474T A23403G G25429T G28975T

EPI_ISL_440969
 2020-04-02 2020-05-12
 United Kingdom hCoV-19/England/LOND-D365F/2020
 C241T C1869T C3037T C14408T C19170T G19509A A23403G G28077T GGG28881AAC

EPI_ISL_440970
 2020-04-02 2020-05-12
 United Kingdom hCoV-19/England/LOND-D366E/2020
 C241T C2388T A2480G C2558T G11083T C14805T G26144T

EPI_ISL_440991
 2020-04-02 2020-05-12
 United Kingdom hCoV-19/England/LOND-D380E/2020
 C241T C3037T C14408T C16289T A23403G C24632T G25429T

EPI_ISL_440993
 2020-04-02 2020-05-12
 United Kingdom hCoV-19/England/LOND-D382C/2020
 C241T C3037T C5784T C14408T A23403G GGG28881AAC

EPI_ISL_440994
 2020-04-02 2020-05-12
 United Kingdom hCoV-19/England/LOND-D383B/2020
 G1440A G2891A G10384T C10507T C29640T

EPI_ISL_440995
 2020-04-02 2020-05-12
 United Kingdom hCoV-19/England/LOND-D384A/2020
 C241T C3037T C14408T C18657T A23403G GGG28881AAC

EPI_ISL_440996
 2020-04-02 2020-05-12
 United Kingdom hCoV-19/England/LOND-D3859/2020
 G1440A G2891A G10384T C10507T C29640T

EPI_ISL_440997
 2020-04-02 2020-05-12
 United Kingdom hCoV-19/England/LOND-D3868/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_440998
 2020-04-02 2020-05-12
 United Kingdom hCoV-19/England/LOND-D3877/2020
 A2480G C2558T G11083T C14805T G18255T C20428T C22088T G26144T

EPI_ISL_440999
 2020-04-02 2020-05-12
 United Kingdom hCoV-19/England/LOND-D3886/2020
 C241T G2164A C3037T C14408T C18252T A23403G GGG28881AAC

EPI_ISL_441000
 2020-04-02 2020-05-12
 United Kingdom hCoV-19/England/LOND-D3895/2020
 C241T C3037T C6401T C14408T A23403G T27740C GGG28881AAC

EPI_ISL_441001
 2020-04-02 2020-05-12
 United Kingdom hCoV-19/England/LOND-D38A4/2020
 C241T C3037T C14408T A23403G A26530G

EPI_ISL_441002
 2020-04-02 2020-05-12
 United Kingdom hCoV-19/England/LOND-D38B3/2020
 C241T C3037T C8016T C14408T A23403G A26530G

EPI_ISL_441003
 2020-04-02 2020-05-12
 United Kingdom hCoV-19/England/LOND-D38C2/2020
 C241T C3037T C14408T A23403G A26530G

EPI_ISL_441004
 2020-04-02 2020-05-12
 United Kingdom hCoV-19/England/LOND-D38D1/2020
 C241T C3037T C14408T C21621T A23403G

EPI_ISL_441228
 2020-04-02 2020-05-12
 United Kingdom hCoV-19/England/CAMB-7A247/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_441301
 2020-04-02 2020-05-12
 United Kingdom hCoV-19/England/CAMB-79CB3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C17010T A23403G GGG28881AAC C29281T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_441305
 2020-04-02 2020-05-12
 United Kingdom hCoV-19/England/CAMB-79B6B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C843T C3037T G8137T C14408T A23403G GGG28881AAC AAAAA29899-

EPI_ISL_441313
 2020-04-02 2020-05-12
 United Kingdom hCoV-19/England/CAMB-79D47/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C990T C3037T C4002T G10097A C11355T C13536T C14408T A23403G C23731T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_441319
 2020-04-02 2020-05-12
 United Kingdom hCoV-19/England/CAMB-79F14/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10232T C14408T A23403G

EPI_ISL_441335
 2020-04-02 2020-05-12
 United Kingdom hCoV-19/England/CAMB-79B4D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1170T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_441591
 2020-04-02 2020-05-12
 United Kingdom hCoV-19/England/CAMB-7B7ED/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6627T C14408T A22803G A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_441800
 2020-04-02 2020-05-12
 United Kingdom hCoV-19/England/CAMB-7A57B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G4185A G11083K C14805T T25202K G25906T G26144T C29013T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_442478
 2020-04-02 2020-05-12
 United Kingdom hCoV-19/England/SHEF-D0CBA/2020
 C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_443254
 2020-04-02 2020-05-12
 United States hCoV-19/USA/MN-UMGC-3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C18267T G21793C A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_443258
 2020-04-02 2020-05-12
 France hCoV-19/France/IDF4791/2020
 T10A C241T C2416T C3037T C10969T G11083T C14408T A23403G G25563T ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_443259
 2020-04-02 2020-05-12
 France hCoV-19/France/IDF4793/2020
 C241T C2416T C3037T C10969T G11083T C13426T C14408T A23403G G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_443260
 2020-04-02 2020-05-12
 France hCoV-19/France/IDF4843/2020
 C241T C2416T C3037T G8371T C14408T C17690T A20276G A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_443262
 2020-04-02 2020-05-12
 France hCoV-19/France/BFC5012/2020
 C36T C241T C3037T G4399T C6196T C14408T C15324T A23403G TTG25532- AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_443264
 2020-04-02 2020-05-12
 France hCoV-19/France/BFC5019/2020
 C241T C1059T C3037T G13201T C14408T G21839T A23403G G25563T TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_443285
 2020-04-02 2020-05-12
 France hCoV-19/France/IDF5655/2020
 C241T C1059T C3037T A7930G C9096T C14408T A23403G G25563T C25714T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_443286
 2020-04-02 2020-05-12
 France hCoV-19/France/IDF5657/2020
 C241T C3037T C14408T C15324T A23403G G28851T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_443291
 2020-04-02 2020-05-12
 France hCoV-19/France/B5685/2020
 C241T C3037T C14408T C15324T C20371T A23403G C24442T G25218T AAAAAAAAAAAAAAAAAAAAAA29882-

EPI_ISL_443315
 2020-04-02 2020-05-12
 France hCoV-19/France/HF6466/2020
 C241T C1059T C3037T C9344T G11083T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAA29882-

EPI_ISL_444711
 2020-04-02 2020-05-14
 United States hCoV-19/USA/NY-NYUMC594/2020
 C241T C1059T C3037T C4965T C14408T G17964T A23403G G25563T

EPI_ISL_444712
 2020-04-02 2020-05-14
 United States hCoV-19/USA/NY-NYUMC595/2020
 C241T C1059T C3037T C14408T T19521C A23403G G25563T A28615G

EPI_ISL_444713
 2020-04-02 2020-05-14
 United States hCoV-19/USA/NY-NYUMC596/2020
 C241T C1059T C3037T A4884G C14408T A23403G G25563T

EPI_ISL_444724
 2020-04-02 2020-05-14
 United States hCoV-19/USA/NY-NYUMC607/2020
 C241T C1059T C1514A C3037T C14408T A23403G G25563T

EPI_ISL_444725
 2020-04-02 2020-05-14
 United States hCoV-19/USA/NY-NYUMC608/2020
 C241T C1059T C3037T C14408T A23403G A23419G G25563T C26625T

EPI_ISL_444726
 2020-04-02 2020-05-14
 United States hCoV-19/USA/NY-NYUMC609/2020
 C241T C619T C1059T C3037T C14408T A14912G A23403G G25563T

EPI_ISL_444727
 2020-04-02 2020-05-14
 United States hCoV-19/USA/NY-NYUMC610/2020
 C241T C3037T C14408T A23403G C23997T C27046T GGG28881AAC

EPI_ISL_444730
 2020-04-02 2020-05-14
 United States hCoV-19/USA/NY-NYUMC613/2020
 C241T C1059T C3037T C14408T C18981T A23403G G25563T

EPI_ISL_444732
 2020-04-02 2020-05-14
 United States hCoV-19/USA/NY-NYUMC615/2020
 C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_444734
 2020-04-02 2020-05-14
 United States hCoV-19/USA/NY-NYUMC617/2020
 C241T C1059T C3037T C11916T C12473T C14408T A21356G A23403G G25563T

EPI_ISL_444735
 2020-04-02 2020-05-14
 United States hCoV-19/USA/NY-NYUMC618/2020
 C241T C1059T C3037T T4266C C14408T C20483T A23403G G25563T

EPI_ISL_444736
 2020-04-02 2020-05-14
 United States hCoV-19/USA/NY-NYUMC619/2020
 C241T C1059T C3037T C14408T C16260T A23403G G25563T G28712A C28821A

EPI_ISL_444737
 2020-04-02 2020-05-14
 United States hCoV-19/USA/NY-NYUMC620/2020
 C241T C1059T G1598C C3037T C14408T A23403G G25563T A26433G G28851T G29399T

EPI_ISL_444738
 2020-04-02 2020-05-14
 United States hCoV-19/USA/NY-NYUMC621/2020
 C241T C619T C1059T C3037T C14408T A14912G A23403G G25563T

EPI_ISL_444739
 2020-04-02 2020-05-14
 United States hCoV-19/USA/NY-NYUMC622/2020
 C241T C3037T T14104C C14408T C18877T A23403G G25563T

EPI_ISL_444740
 2020-04-02 2020-05-14
 United States hCoV-19/USA/NY-NYUMC623/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_444741
 2020-04-02 2020-05-14
 United States hCoV-19/USA/NY-NYUMC624/2020
 C241T C1059T C3037T G11083T C14408T A23403G G25563T

EPI_ISL_444742
 2020-04-02 2020-05-14
 United States hCoV-19/USA/NJ-NYUMC625/2020
 C241T C1059T C3037T T12979C C14408T A23403G G25563T

EPI_ISL_444743
 2020-04-02 2020-05-14
 United States hCoV-19/USA/NY-NYUMC626/2020
 C241T C1059T C1917T C3037T T6703C G10981T C14408T G20005A A23403G G25563T

EPI_ISL_444744
 2020-04-02 2020-05-14
 United States hCoV-19/USA/NJ-NYUMC627/2020
 A142G C241T C1059T C3037T G10870T C11916T C14408T C18129T A23403G G25563T

EPI_ISL_444745
 2020-04-02 2020-05-14
 United States hCoV-19/USA/NY-NYUMC628/2020
 C241T C3037T G11083T C14408T C16293T A23403G A25575C

EPI_ISL_444746
 2020-04-02 2020-05-14
 United States hCoV-19/USA/NY-NYUMC629/2020
 C241T C1059T T2022G C3037T C4540T G12143T A14125G C14408T A23403G G25563T

EPI_ISL_444747
 2020-04-02 2020-05-14
 United States hCoV-19/USA/NY-NYUMC630/2020
 G124A C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_444748
 2020-04-02 2020-05-14
 United States hCoV-19/USA/NY-NYUMC631/2020
 C241T C1059T C3037T C14408T G14792T C15763T A23403G G25563T

EPI_ISL_444749
 2020-04-02 2020-05-14
 United States hCoV-19/USA/NY-NYUMC632/2020
 C241T C1059T C3037T T11645A C11916T C14408T A23403G C23601T G25563T G28362T

EPI_ISL_444750
 2020-04-02 2020-05-14
 United States hCoV-19/USA/NY-NYUMC633/2020
 C241T C1059T C3037T C14408T C15763T A23403G G25563T

EPI_ISL_444751
 2020-04-02 2020-05-14
 United States hCoV-19/USA/NY-NYUMC634/2020
 C241T C619T C1059T C3037T C14408T A14912G A23403G G25563T

EPI_ISL_444752
 2020-04-02 2020-05-14
 United States hCoV-19/USA/NY-NYUMC635/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_444753
 2020-04-02 2020-05-14
 United States hCoV-19/USA/NY-NYUMC636/2020
 C241T C1059T C3037T C14408T A17994C A23403G G25563T C25889T

EPI_ISL_444754
 2020-04-02 2020-05-14
 United States hCoV-19/USA/NY-NYUMC637/2020
 C241T C1059T C3037T C6500T C14408T A23403G G25563T

EPI_ISL_444755
 2020-04-02 2020-05-14
 United States hCoV-19/USA/NJ-NYUMC638/2020
 C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_444756
 2020-04-02 2020-05-14
 United States hCoV-19/USA/NY-NYUMC639/2020
 C241T C1059T C3037T C10851T C14408T A23403G G25563T C25721T

EPI_ISL_444762
 2020-04-02 2020-05-14
 United States hCoV-19/USA/NY-NYUMC645/2020
 C241T C3037T C14408T G15181T C18877T A23403G G25563T

EPI_ISL_444764
 2020-04-02 2020-05-14
 United States hCoV-19/USA/NY-NYUMC647/2020
 C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T C27297T C27389T G29540A

EPI_ISL_444844
 2020-04-02 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-1282/2020
 C241T C1059T C1302T C3037T T9454C C14408T A23403G G23426T G25563T

EPI_ISL_444846
 2020-04-02 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-1288/2020
 C241T C3037T C8140T C14408T A20268G A23403G

EPI_ISL_445085 MT470219
 2020-04-02 2020-05-14
 Colombia SARS-CoV-2/human/COL/Cali-01/2020
 C241T C1059T C3037T C14408T A23122T A23403G G25563T

EPI_ISL_445120
 2020-04-02 2020-05-15
 United States hCoV-19/USA/LA-SR0265/2020
 C241T C1059T C3037T G6362A C7815T C10188T C14408T A23403G T24982C G25563T T26409C C27964T

EPI_ISL_445124
 2020-04-02 2020-05-15
 United States hCoV-19/USA/LA-SR0269/2020
 C241T C1059T C3037T G12988T C14408T C21302T A23403G G25563T C27964T

EPI_ISL_445132
 2020-04-02 2020-05-15
 United States hCoV-19/USA/LA-SR0277/2020
 C241T T469C C1059T C3037T C9319A C10319T C12085T C14408T A23403G C23506T G25563T C27964T

EPI_ISL_445146
 2020-04-02 2020-05-15
 United States hCoV-19/USA/LA-SR0291/2020
 C241T C1059T C3037T C14408T A23403G C23638T G25563T C27964T

EPI_ISL_445162
 2020-04-02 2020-05-15
 United States hCoV-19/USA/LA-SR0307/2020
 C241T C1059T C3037T C9603T C10319T C11344T C14408T A23403G G25563T C27964T

EPI_ISL_445219
 2020-04-02 2020-05-15
 Colombia hCoV-19/Colombia/Cali-01-2/2020
 C241T C1059T C3037T C14408T A23122T A23403G G25563T

EPI_ISL_445351
 2020-04-02 2020-05-15
 Chile hCoV-19/Chile/Santiago_55/2020
 A2480G C2558T C3096T C9170T G11083T T14263K C14805T G15088R G26144T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_445353
 2020-04-02 2020-05-15
 Chile hCoV-19/Chile/Santiago_57/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- C241T C3037T C14408T T21632A A23403G GGG28881AAC C29253Y CA29838TG G29841A GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_445354
 2020-04-02 2020-05-15
 Chile hCoV-19/Chile/Santiago_58/2020
 AT1GA C241T C3037T C8389T C14408T C19554T T20738W A21446G A23403G G25563T C28310Y TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_445423
 2020-04-02 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-28C59/2020
 C241T C1059T C3037T C7869T C14408T A23403G G24368T C24621T G25563T G29864R

EPI_ISL_445433
 2020-04-02 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-28D38/2020
 ATTA1- C241T C3037T C14408T G19962T C21090M A23403G T23905Y

EPI_ISL_445434
 2020-04-02 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-28D56/2020
 G1440A G2891A C25669T G28378C G28851T

EPI_ISL_446270
 2020-04-02 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-30007/2020
 A1- C3738T G11083T G12188T C14805T T17247C G26144T

EPI_ISL_447025
 2020-04-02 2020-05-16
 Thailand hCoV-19/Thailand/Bangkok-0084/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1397A G11083T G14653A C15240T A20284G C28311G T28688C G29737T G29742T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_447105 MT506566
 2020-04-02 2020-05-16
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20308/2020
 C180T C241T C1059T C3037T C14408T C14422T A23403G G25563T G28314A

EPI_ISL_447264
 2020-04-02 2020-05-17
 Israel hCoV-19/Israel/990300860/2020
 C241T C1059T C3037T C11916T C14408T C17373T C18998T A23403G C25517T G25563T G26062T G29540A AAAAAAAAAAAA29892-

EPI_ISL_447353
 2020-04-02 2020-05-17
 Israel hCoV-19/Israel/2099421/2020
 C241T C3037T G5253A C14408T A23403G C25350T AAAAAAAAAAAA29892-

EPI_ISL_447355
 2020-04-02 2020-05-17
 Israel hCoV-19/Israel/2099251/2020
 C241T C1059T C3037T C14408T A20755C A23403G G25563T AAAAAAAAAAAA29892-

EPI_ISL_447401
 2020-04-02 2020-05-17
 Israel hCoV-19/Israel/2046616/2020
 C241T C1059T C3037T C11916T G13459T C14408T C18998T A23403G G25563T G26458T G28378T G29540A AAAAAAAAAAAA29892-

EPI_ISL_447402
 2020-04-02 2020-05-17
 Israel hCoV-19/Israel/2046614/2020
 C241T C1059T C3037T C11916T C14408T C18998T G19006T A23403G G25563T A29439T G29540A AAAAAAAAAAAA29892-

EPI_ISL_447436
 2020-04-02 2020-05-17
 Israel hCoV-19/Israel/13077497/2020
 C241T C1059T C3037T C14408T C19983T A23403G C24023T G25563T AAAAAAAAAAAA29892-

EPI_ISL_447440
 2020-04-02 2020-05-17
 Israel hCoV-19/Israel/13077377/2020
 C241T C3037T C14408T C20480T A23403G G25563T AAAAAAAAAAAA29892-

EPI_ISL_447575
 2020-04-02 2020-05-17
 India hCoV-19/India/CCMB_J458/2020
 ATTAAAGGTTT1- A6081G C6312A G11083T C13730T C18511T G19679T C22663A C23929T C28311T

EPI_ISL_447576
 2020-04-02 2020-05-17
 India hCoV-19/India/CCMB_J232/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- T1723C C6312A G11083T AATGC12358CTCTT C13730T G19679T C23929T C28311T

EPI_ISL_447577
 2020-04-02 2020-05-17
 India hCoV-19/India/CCMB_J321/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C6310A C6312A G11083T C13730T C23929T C28311T

EPI_ISL_447578
 2020-04-02 2020-05-17
 India hCoV-19/India/CCMB_J327/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C6312A G11083T C13730T C15048T C23929T T27273C C28311T

EPI_ISL_447785
 2020-04-02 2020-05-18
 Colombia hCoV-19/Colombia/GVI-93511/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C1059T C3037T C14408T A23403G G25563T GCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29783-

EPI_ISL_447854
 2020-04-02 2020-05-18
 India hCoV-19/India/CCMB_J350/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- A6081G C6312A G11083T C13730T C23929T C28311T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_447855
 2020-04-02 2020-05-18
 India hCoV-19/India/CCMB_J318/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C1707T C6310A C6312A G11083T C13730T C19524T C23929T C28311T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_447856
 2020-04-02 2020-05-18
 India hCoV-19/India/CCMB_J374/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C6312A G11083T C13730T A21792T C23929T C28311T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_447857
 2020-04-02 2020-05-18
 India hCoV-19/India/CCMB_J390/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C6310A C6312A G11083T G12685T C13730T C19524T C23929T C28311T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_447890 MT481930
 2020-04-02 2020-05-18
 United States SARS-CoV-2/human/USA/CA-CZB-1139/2020
 ATTAAAGGTTTATA1- C241T GTT669- C1059T C3037T C14408T C15182G C18457T A23403G C25487T G25563T C27964T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_448119
 2020-04-02 2020-05-19
 United Kingdom hCoV-19/Scotland/CVR1601/2020
 C241T C3037T C10798A C13862T C14408T A23403G C28836T

EPI_ISL_449793
 2020-04-02 2020-05-19
 Norway hCoV-19/Norway/2388/2020
 ATTAAAGGTT1- C241T C1059T C3037T G5148T T13210G C14408T A23403G C24621T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_450330
 2020-04-02 2020-05-20
 India hCoV-19/India/CCMB_J375/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C6312A G11083T C13730T AA21550MW A21792T C23929T C28311T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_450402
 2020-04-02 2020-05-21
 United States hCoV-19/USA/NY-NYUMC685/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_450801 MT507279
 2020-04-02 2020-05-22
 United States SARS-CoV-2/human/USA/GA-CDC-4518/2020
 C241T C1059T T1211G C3037T C14408T A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_450836
 2020-04-02 2020-05-22
 Sweden hCoV-19/Sweden/20-08715/2020
 C241T C3037T C14195A C14408T A23403G

EPI_ISL_450837
 2020-04-02 2020-05-22
 Sweden hCoV-19/Sweden/20-08718/2020
 C241T C854T C1059T C3037T G7027T G7452T C14408T A23403G G24368T G25563T C27005T

EPI_ISL_451972 MT511067
 2020-04-02 2020-05-26
 Poland SARS-CoV-2/human/POL/PL_P11/2020
 C241T C3037T C14408T G14580T A23403G G29477T C29870M

EPI_ISL_451980 MT511075
 2020-04-02 2020-05-26
 Poland SARS-CoV-2/human/POL/PL_P19/2020
 C19T C106T C241T C3037T A8072G C14408T A23403G GGG28881AAC C29870M

EPI_ISL_451983 MT511078
 2020-04-02 2020-05-26
 Poland SARS-CoV-2/human/POL/PL_P22/2020
 C241T C541T A544R C3037T G4180T T7767C C11704T C14408T G19254T A23403G GGG28881RRS

EPI_ISL_453507
 2020-04-02 2020-05-27
 United Kingdom hCoV-19/England/NORT-28994E/2020
 C241T C2902T C3037T C14408T A23403G A24385G GGG28881AAC

EPI_ISL_453509
 2020-04-02 2020-05-27
 United Kingdom hCoV-19/England/NORT-2899D5/2020
 C241T C3037T C3373A C11195T C14408T A23403G G24056A T25180C GGG28881AAC

EPI_ISL_453961
 2020-04-02 2020-05-28
 Portugal hCoV-19/Portugal/PT0247/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3140T C14408T C17747T G21761T A23403G G24077T T28705C C29555T CTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29788-

EPI_ISL_453963
 2020-04-02 2020-05-28
 Portugal hCoV-19/Portugal/PT0249/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A20268G A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_453965
 2020-04-02 2020-05-28
 Portugal hCoV-19/Portugal/PT0251/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T G14118A C14408T C17750T C21707T A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_453966
 2020-04-02 2020-05-28
 Portugal hCoV-19/Portugal/PT0252/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454371
 2020-04-02 2020-05-28
 United States hCoV-19/USA/PA-MGEL88/2020
 C241T C1059T C3037T C14408T A23403G G25563T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_454375
 2020-04-02 2020-05-28
 United States hCoV-19/USA/PA-MGEL94/2020
 C241T C1059T C3037T C14408T A23403G G25563T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_454379
 2020-04-02 2020-05-28
 United States hCoV-19/USA/PA-MGEL99/2020
 C241T C1059T C3037T C11916T C14408T C18998T A20553G A23403G G25563T G29540A GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_454641 MT533238
 2020-04-02 2020-05-28
 United States SARS-CoV-2/human/USA/CA-CZB-1283/2020
 ATTAAAGGTTTATACC1- C241T C3037T C4540T G4904T G5206T C14408T A23403G C24138T C25350T G28628T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_454732
 2020-04-02 2020-05-28
 Russia hCoV-19/Russia/Moscow_PMVL-6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T C14408T T17206C A23403G GGG28881AAC AAAAAAAAAA29894-

EPI_ISL_454776
 2020-04-02 2020-05-29
 Netherlands hCoV-19/Netherlands/Utrecht_10027/2020
 ATTAAAG1- C241T C3037T G9890T C12915T C14408T C20148T A23403G G29422T AAAAAA29898-

EPI_ISL_455125
 2020-04-02 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_320/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T11638C C14408T G22865T A23403G GGG28881AAC C29708T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455126
 2020-04-02 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_321/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T10561C C14408T C15324T A23403G G27478T C28844T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455129
 2020-04-02 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_324/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455195
 2020-04-02 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_393/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6659G C14408T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455252
 2020-04-02 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_450/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C478T C3037T G12550A C14408T A20268G C20740A A23403G G29734C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455261
 2020-04-02 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_459/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455294
 2020-04-02 2020-05-29
 Netherlands hCoV-19/Netherlands/ZuidHolland_105/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C19343T T19839C A23403G GGAACTGTAACTTTG25423- GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455431
 2020-04-02 2020-05-29
 Nigeria hCoV-19/Nigeria/OY045A-CV35/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- A2480G C2558T G11083T C14805T G26144T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_455597
 2020-04-02 2020-06-01
 Australia hCoV-19/Australia/VPRL005/2020
 C241T C583T C2416T C3037T C14408T A23403G G25563T

EPI_ISL_455644
 2020-04-02 2020-06-01
 India hCoV-19/India/S14/2020
 C241T C3037T C13730T C14408T A23403G

EPI_ISL_455707
 2020-04-02 2020-06-01
 Vietnam hCoV-19/Vietnam/VNHN_4189/2020
 C241T C3037T C14408T A23403G T27318C GGG28881AAC

EPI_ISL_455783
 2020-04-02 2020-06-01
 India hCoV-19/India/RMRC6/2020
 C241T C3037T C14408T A23403G G25563T C26735T A29039T GTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29690-

EPI_ISL_456075
 2020-04-02 2020-06-01
 Brazil hCoV-19/Brazil/RJ-1100/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T A23403G T27299C C27644T GGG28881AAC T29148C GAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29781-

EPI_ISL_456082
 2020-04-02 2020-06-01
 Brazil hCoV-19/Brazil/RJ-1600/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2210T C3037T C14408T A23403G T27299C GGG28881AAC T29148C CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_456294
 2020-04-02 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1887/2020
 C241T C2189T C3037T C9438T C14408T A23403G

EPI_ISL_456302
 2020-04-02 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1903/2020
 C241T C1059T C3037T T5013C C14408T C16260T A23403G G25563T C28821A

EPI_ISL_456303
 2020-04-02 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1907/2020
 C241T C1059T C14408T C17352T C24034T C28821A

EPI_ISL_456305
 2020-04-02 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1910/2020
 C3096T C12781T G13627T C14805T C15540T A15618C G17944T G26144T A28338G

EPI_ISL_456310
 2020-04-02 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1925/2020
 C241T C1059T C3037T C14408T C16260T A23403G G25563T C28821A

EPI_ISL_456908
 2020-04-02 2020-06-02
 United Kingdom hCoV-19/Scotland/EDB2966/2020
 C241T C3037T C12400T C14408T A23403G

EPI_ISL_456952
 2020-04-02 2020-06-02
 United Kingdom hCoV-19/Scotland/EDB5040/2020
 C593T C8782T G9928T C26088T T28144C

EPI_ISL_457058
 2020-04-02 2020-06-02
 United Kingdom hCoV-19/England/EXET-135423/2020
 C241T C3037T C5005T C14408T A23403G GGG28881AAC

EPI_ISL_457643
 2020-04-02 2020-06-02
 United Kingdom hCoV-19/England/SHEF-CAA5F/2020
 C241T C3037T C14408T G22427A A23403G G27441T GGG28881AAC

EPI_ISL_460139 MT520214
 2020-04-02 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00651/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C1059T C3037T T13006C C14408T A23403G G25563T C25688T T26102C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_460189 MT520264
 2020-04-02 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00633/2020
 ATTAAAGGTTTA1- G105T C241T C3037T C14408T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_460197 MT520272
 2020-04-02 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00653/2020
 ATTAAA1- C241T C2416T C3037T T10216C C14408T A23403G G25563T G26233T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_460254 MT520329
 2020-04-02 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00650/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T C1059T C3037T C14408T C16869T A23403G G25563T C25714T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460298 MT520373
 2020-04-02 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00649/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- G105T C241T C3037T C14408T C18877T A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_460330 MT520405
 2020-04-02 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00654/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C2106T C3037T C14408T A23403G C28603T G28899T A29806T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_460386 MT520461
 2020-04-02 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00648/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T T833C C1059T C3037T C14408T C16616T A18163T A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAAAAA29882-

EPI_ISL_460419 MT520494
 2020-04-02 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00646/2020
 ATTAAAGGTTTATACCTTCCCA1- C8782T C17747T A17858G C18060T A24694T T28144C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460443 MT520518
 2020-04-02 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00635/2020
 ATTAAAGGTTTATACCTTCCC1- C241T C2416T C3037T A6672G C14408T A23403G G25563T G26233T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_460660
 2020-04-02 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_487/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C478T C3037T G12550A C14408T A20268G C20740A A23403G C29548A G29734C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460676
 2020-04-02 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_503/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1997T C3037T C14408T A23403G G29422T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460683
 2020-04-02 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_510/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C478T C3037T G12550A C14408T A20268G C20740A A23403G C29548A G29734C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460795
 2020-04-02 2020-06-06
 Netherlands hCoV-19/Netherlands/NoordHolland_6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4586T G12550A C14408T A20268G C20740A A23403G G29734C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460829
 2020-04-02 2020-06-06
 Netherlands hCoV-19/Netherlands/Utrecht_26/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C14408T G19518T A23403G G28845T GGG28881AAC C29108T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460830
 2020-04-02 2020-06-06
 Netherlands hCoV-19/Netherlands/Utrecht_27/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9749G C14408T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461035
 2020-04-02 2020-06-06
 Netherlands hCoV-19/Netherlands/Limburg_47/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3044T T11638C C14408T G21786T A23403G C27549T GGG28881AAC C29708T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461036
 2020-04-02 2020-06-06
 Netherlands hCoV-19/Netherlands/Limburg_48/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2909G C3037T C3044T T11638C C14408T G21786T A23403G C27549T GGG28881AAC C29708T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461408 MT683387
 2020-04-02 2020-06-06
 United States SARS-CoV-2/human/USA/CT-UW-6577/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C14408T G15760A A23403G G25563T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_461409
 2020-04-02 2020-06-06
 United States hCoV-19/USA/CT-UW-6582/2020
 A1- A34H C36T C241T C1059T C3037T C5654T C10851T C14408T G17658T A23403G G25477T G25563T G27754T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876C

EPI_ISL_461411
 2020-04-02 2020-06-06
 United States hCoV-19/USA/CT-UW-6586/2020
 ATTAAAGGTTT1- T13C C241T C1059T C3037T C3253T G9116A C14408T C18348T T18471C A23403G G25563T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_461417 MT683391
 2020-04-02 2020-06-06
 United States SARS-CoV-2/human/USA/CT-UW-6594/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGA1- C1059T C3037T C6026T C14408T A23403G G25563T C28836T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_461735
 2020-04-02 2020-06-06
 United Kingdom hCoV-19/Scotland/EDB5388/2020
 C241T C2841T C3037T C10798A C13862T C14408T A23403G C28836T

EPI_ISL_461736
 2020-04-02 2020-06-06
 United Kingdom hCoV-19/Scotland/EDB5389/2020
 C241T C2841T C3037T C10798A C13862T C14408T C18086T A23403G C28836T

EPI_ISL_461737
 2020-04-02 2020-06-06
 United Kingdom hCoV-19/Scotland/EDB5390/2020
 C241T C2841T C3037T C10798A C11824T C13862T C14408T A23403G C28836T

EPI_ISL_461738
 2020-04-02 2020-06-06
 United Kingdom hCoV-19/Scotland/EDB5391/2020
 C241T C313T C3037T C11824T G12328A C14408T A23403G GGG28881AAC

EPI_ISL_462228
 2020-04-02 2020-06-08
 Belgium hCoV-19/Belgium/VGM-0402374/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C14408T A23403G C26894T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462237
 2020-04-02 2020-06-08
 Belgium hCoV-19/Belgium/MG-0402383/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15277T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462360
 2020-04-02 2020-06-08
 Singapore hCoV-19/Singapore/242/2020
 C6310A C6312A C9180T G11083T C13730T T17643C C19524T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_463927
 2020-04-02 2020-06-11
 Canada hCoV-19/Canada/QC_AQ1/2020
 C241T AAGTCATTT686- C1059T C3037T C14408T G22232C A23403G G25563T

EPI_ISL_463930
 2020-04-02 2020-06-11
 Canada hCoV-19/Canada/QC_AQ6/2020
 C241T C3037T G3728T C14408T C15324T A23403G C25433T

EPI_ISL_463936
 2020-04-02 2020-06-11
 Canada hCoV-19/Canada/QC_AS4/2020
 C241T C3037T C14408T C15324T A23403G C25433T

EPI_ISL_464012
 2020-04-02 2020-06-11
 Canada hCoV-19/Canada/ON-UHTC_0047/2020
 C241T C3037T C14408T A23403G

EPI_ISL_464046
 2020-04-02 2020-06-11
 Canada hCoV-19/Canada/ON-UHTC_0055/2020
 C241T C1059T C3037T C14408T G14653T C17339T A23403G G25563T G28368A

EPI_ISL_464056
 2020-04-02 2020-06-11
 Canada hCoV-19/Canada/ON-UHTC_0052/2020
 C241T C1059T C3037T C9611T G13984T C14408T A23403G G25563T

EPI_ISL_464093 MT590599
 2020-04-02 2020-06-11
 Taiwan SARS-CoV-2/human/TWN/CGMH-CGU-29/2020
 T490A C3177T C6040T C8782T T11470C G12478A T18736C C24034T T26729C G28077C T28144C C28896G A29700G AA29902-

EPI_ISL_464144
 2020-04-02 2020-06-11
 South Africa hCoV-19/SouthAfrica/Tygerberg_33/2020
 C241T C14408T T20891G A23403G AG24389CC GGG28881AAC

EPI_ISL_466036
 2020-04-02 2020-06-11
 United Kingdom hCoV-19/England/20146018204/2020
 C241T C751T C3037T G6611K C9491Y C14408T A23403G

EPI_ISL_466037
 2020-04-02 2020-06-11
 United Kingdom hCoV-19/England/20146018302/2020
 C241T C3037T C14408T A23403G G26914T C27145S G27238T

EPI_ISL_466048
 2020-04-02 2020-06-11
 United Kingdom hCoV-19/England/20148001404/2020
 C241T C3037T C8025T C14408T A20268G A23403G C26079Y G29734C

EPI_ISL_466069
 2020-04-02 2020-06-11
 United Kingdom hCoV-19/England/20148045404/2020
 A2480G C2558T C7011T G11405A C14805T A23403R G26144T C28869T

EPI_ISL_466071
 2020-04-02 2020-06-11
 United Kingdom hCoV-19/England/20148049704/2020
 A2480G C2558T C7011T G11083T G11405A C14805T C17285Y C19895T G26144T C28869T G29779T

EPI_ISL_466077
 2020-04-02 2020-06-11
 United Kingdom hCoV-19/England/20148067304/2020
 C241T C1059T C1437T C3037T T13006C C14408T A23403G G25563T C25688T

EPI_ISL_466081
 2020-04-02 2020-06-11
 United Kingdom hCoV-19/England/20149001104/2020
 C241T C3037T C14408T C23086T A23403G A27237G GGG28881AAC

EPI_ISL_466086
 2020-04-02 2020-06-11
 United Kingdom hCoV-19/England/20149002404/2020
 C241T C3037T C14408T A23403G C28377T GGG28881AAC

EPI_ISL_466088
 2020-04-02 2020-06-11
 United Kingdom hCoV-19/England/20149002704/2020
 C241T A454C C3037T C14408T A23403G GGG28881AAC

EPI_ISL_466098
 2020-04-02 2020-06-11
 United Kingdom hCoV-19/England/20149004004/2020
 C241T C3037T C14408T A23403G C28377T GGG28881AAC

EPI_ISL_466099
 2020-04-02 2020-06-11
 United Kingdom hCoV-19/England/20149004104/2020
 A27G C241T C3037T C14408T A23403G C28377T GGG28881AAC

EPI_ISL_466153
 2020-04-02 2020-06-11
 United Kingdom hCoV-19/England/20149012504/2020
 C241T C3037T C8025T C14408T A20268G A23403G C29679Y G29734C T29823Y

EPI_ISL_466195
 2020-04-02 2020-06-11
 United Kingdom hCoV-19/England/20149043704/2020
 C241T C3037T C6738Y C14408T G21873K A23403G GGG28881AAC

EPI_ISL_466205
 2020-04-02 2020-06-11
 United Kingdom hCoV-19/England/20149051704/2020
 C8782T C13430T C17747T A17858G C18060T G18756T C21145T G22933R G25186T T27384C T28144C

EPI_ISL_467184
 2020-04-02 2020-06-12
 Spain hCoV-19/Spain/COV003705/2020
 C241T C2023T C3037T C14408T A20268G A23403G T29637C G29734C

EPI_ISL_467186
 2020-04-02 2020-06-12
 Spain hCoV-19/Spain/COV003687/2020
 C241T C3037T C14408T A20268G A23403G C28000T G28985T

EPI_ISL_467198
 2020-04-02 2020-06-12
 Spain hCoV-19/Spain/COV003685/2020
 C8782T C10029T C19524T C26088T G28079A T28144C

EPI_ISL_467199
 2020-04-02 2020-06-12
 Spain hCoV-19/Spain/COV003708/2020
 C241T C3037T C6696T C14408T T14565W A20268G G20373A A23403G

EPI_ISL_467207
 2020-04-02 2020-06-12
 Spain hCoV-19/Spain/COV003697/2020
 C241T C3037T C14408T A20268G A23403G G29734C

EPI_ISL_467216
 2020-04-02 2020-06-12
 Spain hCoV-19/Spain/COV003709/2020
 C241T C3037T C10582T C14408T T19839C A23403G GGG28881AAC

EPI_ISL_467219
 2020-04-02 2020-06-12
 Spain hCoV-19/Spain/COV003681/2020
 C8782T C19070T C26088T T28144C

EPI_ISL_467224
 2020-04-02 2020-06-12
 Spain hCoV-19/Spain/COV003706/2020
 G11083T G26144T C26735T

EPI_ISL_467227
 2020-04-02 2020-06-12
 Spain hCoV-19/Spain/COV003707/2020
 C8782T G9761T A9829M T12364A C13923T A19719T C26088T T28144C

EPI_ISL_467229
 2020-04-02 2020-06-12
 Spain hCoV-19/Spain/COV003694/2020
 C8782T A10486G G22331R C26088T T28144C G29402T

EPI_ISL_467230
 2020-04-02 2020-06-12
 Spain hCoV-19/Spain/COV003677/2020
 C241T C556Y A919R C3037T C10556Y C14408T A20268G A23403G C28000T G28985T

EPI_ISL_467235
 2020-04-02 2020-06-12
 Spain hCoV-19/Spain/COV003702/2020
 C241T C3037T C14408T A20268G C21914Y A23403G G29734C

EPI_ISL_467249
 2020-04-02 2020-06-12
 Spain hCoV-19/Spain/COV003691/2020
 C8152T C8782T C9665T G13993T C26088T T28144C

EPI_ISL_467256
 2020-04-02 2020-06-12
 Spain hCoV-19/Spain/COV003698/2020
 C241T C3037T C14408T A20268G A23403G C24378T A28349T G29734C

EPI_ISL_467257
 2020-04-02 2020-06-12
 Spain hCoV-19/Spain/COV003696/2020
 C241T C3037T C14408T A20268G A23403G G29734C

EPI_ISL_467259
 2020-04-02 2020-06-12
 Spain hCoV-19/Spain/COV003700/2020
 C241T C3037T C14408T A20268G A23403G

EPI_ISL_467260
 2020-04-02 2020-06-12
 Spain hCoV-19/Spain/COV003676/2020
 C241T C3037T C14408T G18756A A20268G A23403G G29734C

EPI_ISL_467261
 2020-04-02 2020-06-12
 Spain hCoV-19/Spain/COV003693/2020
 A169G C241T C3037T G6320T C8597A C14408T A20268G A23403G G24697T

EPI_ISL_467344
 2020-04-02 2020-06-12
 Brazil hCoV-19/Brazil/RJ-1555/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- A1515G C9223T G11083T C14805T T17247C C18348T G26144T G26918T GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_467345
 2020-04-02 2020-06-12
 Brazil hCoV-19/Brazil/RJ-1574/2020
 ATTAAAGGTTT1- C241T C1420T C3037T C14408T A23403G T27299C GGG28881AAC T29148C GAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29781-

EPI_ISL_467346
 2020-04-02 2020-06-12
 Brazil hCoV-19/Brazil/RJ-1595/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C492T A1515G C1915T C9223T G11083T C14805T C15848T T17247C T22618G G26144T C28332T C28500T GAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29781-

EPI_ISL_467434
 2020-04-02 2020-06-14
 South Africa hCoV-19/South Africa/KRISP-0019/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C3037T C14408T A23403G GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_467435
 2020-04-02 2020-06-14
 South Africa hCoV-19/South Africa/KRISP-0021/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C2997T C3037T C14408T A23403G GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_467552
 2020-04-02 2020-06-14
 United States hCoV-19/USA/NM-UNM-00113/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C3037T C4543T C14408T C18877T A20465G A23403G G25563T ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_467644
 2020-04-02 2020-06-14
 United States hCoV-19/USA/NM-UNM-00110/2020
 C241T C900T C3037T G4148T C14408T C18877T C23124G A23403G G25563T

EPI_ISL_467651
 2020-04-02 2020-06-14
 United States hCoV-19/USA/NM-UNM-00133/2020
 C241T C3037T C14408T G18859T A23403G G27084T GGG28881AAC

EPI_ISL_467652
 2020-04-02 2020-06-14
 United States hCoV-19/USA/NM-UNM-00134/2020
 C241T C3037T C14408T G18859T A23403G G27084T GGG28881AAC

EPI_ISL_467980
 2020-04-02 2020-06-16
 United States hCoV-19/USA/CA-SR0458/2020
 C241T C3037T C4540T G4904T G5206T C14408T A23403G C24138T C25350T

EPI_ISL_468017
 2020-04-02 2020-06-16
 Australia hCoV-19/Australia/SAP019/2020
 C241T C2416T C3037T C14408T A23403G G25563T

EPI_ISL_468019
 2020-04-02 2020-06-16
 Australia hCoV-19/Australia/SAP014/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C2416T C3037T C14408T A23403G G25563T

EPI_ISL_468358 MT628095
 2020-04-02 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1330/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C8782T T9094C T12883C C17747T A17858G C18060T T26171A T28144C

EPI_ISL_468499 MT628223
 2020-04-02 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1562/2020
 C241T C1059T C1887Y A2151R C3037T A13712G C14408T A17615G A23403G G25563T C29614T

EPI_ISL_468500 MT628224
 2020-04-02 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1563/2020
 ATTAAAGGTTTA1- C241T C1059T C1887Y C3037T C14408T A17615G A23403G G25563T C29614T

EPI_ISL_468530 MT628253
 2020-04-02 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1601/2020
 ATTAA1- C4776T C8782T C17104T C17747T A17858G C18060T G28086T T28144C

EPI_ISL_468625 MT631816
 2020-04-02 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1689/2020
 AT1- C241T C379A C1059T C3037T C14408T A20374G C21077Y A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_468626 MT631817
 2020-04-02 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1690/2020
 ATTA1- C241T T277Y C379A C1059T C3037T C14408T A20374G A23403G G25563T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_468628 MT631819
 2020-04-02 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1693/2020
 A1- C241T C379A C1059T C3037T C14408T T19551K A20374G A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_468629 MT631820
 2020-04-02 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1694/2020
 C241T C379A C1059T C3037T C8683Y A10317R C13981T C14408T A20374G A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_468631 MT631822
 2020-04-02 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1696/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C379A C1059T C3037T C14408T C15940Y C20233Y A20374G A23403G G25217K G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_468632 MT631823
 2020-04-02 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1697/2020
 C241T C379A C1059T C3037T A8976R C14408T A20374G A23403G G25563T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_468633 MT631824
 2020-04-02 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1698/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C379A C1059T C3037T C5986Y G6094K G6297K G9425K C14408T A20374G A23403G T23546Y G25563T C25889Y G29783K TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_468634 MT631825
 2020-04-02 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1700/2020
 T2Y C241T C379A C1059T C3037T C14408T A20374G A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_468637 MT631828
 2020-04-02 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1704/2020
 C241T C379A C1059T C3037T C14408T A20374G A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_468638 MT631829
 2020-04-02 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1705/2020
 C241T C379A C1059T C3037T C14408T A20374G A23403G G25563T GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_468640 MT631831
 2020-04-02 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1709/2020
 C241T C379A C1059T C3037T C14408T A20374G A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_468642 MT631833
 2020-04-02 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1711/2020
 A1- C241T C379A C1059T C3037T C14408T A20374G G22899K A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_469189
 2020-04-02 2020-06-17
 United States hCoV-19/USA/CT-Yale-263/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C11916T C14408T T17901Y C18998T A23403G G25563T G29540A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469195
 2020-04-02 2020-06-17
 United States hCoV-19/USA/CT-Yale-271/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T6882C C13730T C14408T A23403G G25429T G28079T C29732G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469200
 2020-04-02 2020-06-17
 United States hCoV-19/USA/CT-Yale-277/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G C23453T G25563T GGAGTACGATCGAGT29744- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469605
 2020-04-02 2020-06-18
 United Kingdom hCoV-19/England/BRIS-127891/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469608
 2020-04-02 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12799E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10626T G11335T C14408T C22450T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469636
 2020-04-02 2020-06-18
 United Kingdom hCoV-19/England/BRIS-1276B5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469675
 2020-04-02 2020-06-18
 United Kingdom hCoV-19/England/BRIS-1279CB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T C9118T C9724T G11083T C14805T A22964G G26144T G28882T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469704
 2020-04-02 2020-06-18
 United Kingdom hCoV-19/England/BRIS-1279AD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11335T C14408T C22450T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_470901
 2020-04-02 2020-06-19
 Russia hCoV-19/Russia/Moscow_PMVL-8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C3037T C14408T T19839C T20256G A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_471206
 2020-04-02 2020-06-19
 United States hCoV-19/USA/WI-WSLH-200041/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471208
 2020-04-02 2020-06-19
 United States hCoV-19/USA/WI-WSLH-200043/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3079T C13862T C14408T T15354C C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471214
 2020-04-02 2020-06-19
 United States hCoV-19/USA/WI-WSLH-200049/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G15760A A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471227
 2020-04-02 2020-06-19
 United States hCoV-19/USA/WI-WSLH-200062/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T G16381A T17877C C20316T G25500T C26192T G26211T T28144C G28878A G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471244
 2020-04-02 2020-06-19
 United States hCoV-19/USA/WI-WSLH-200079/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T A18211C A23403G G25563T C27964T A29143C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471541
 2020-04-02 2020-06-22
 Brazil hCoV-19/Brazil/SP-126/2020
 T25G C241T C3037T C5812T C12053T C14408T A23403G G25088T GGG28881AAC GGA29861TAT AAAAAAAAAAAAA29891-

EPI_ISL_471956
 2020-04-02 2020-06-23
 United Kingdom hCoV-19/England/EXET-137236/2020
 ATG1605- G14335T

EPI_ISL_474248
 2020-04-02 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-29D19/2020
 AT1- C241T C3037T T4186C G11801A C14408T T19839C A23403G G25552T GGG28881AAC

EPI_ISL_474803
 2020-04-02 2020-06-23
 Spain hCoV-19/Spain/Albacete-COV003760/2020
 C241T C3037T C8299T C14408T A20268G A23403G

EPI_ISL_474818
 2020-04-02 2020-06-23
 Spain hCoV-19/Spain/Albacete-COV003792/2020
 C241T C3037T C6723Y C14408T A20268G A23403G

EPI_ISL_474836
 2020-04-02 2020-06-23
 Spain hCoV-19/Spain/Alcala_la_Real-COV002998/2020
 C241T C1348T C3037T C14408T A20268G A22803G A23403G

EPI_ISL_474890
 2020-04-02 2020-06-23
 Spain hCoV-19/Spain/Granada-COV003010/2020
 C8782T T9477A G13793A C14805T G25793K G25979T G27201R T28144C C28657T C28863T

EPI_ISL_475119
 2020-04-02 2020-06-23
 Sweden hCoV-19/Sweden/20-50595/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T

EPI_ISL_475149
 2020-04-02 2020-06-23
 Sweden hCoV-19/Sweden/20-50600/2020
 C241T C1059T C3037T C8961T C14408T A23403G G24368T G25563T

EPI_ISL_475150
 2020-04-02 2020-06-23
 Sweden hCoV-19/Sweden/20-50601/2020
 C241T C1059T C3037T G9431T C14408T A23403G G24368T G25563T C26029A

EPI_ISL_475151
 2020-04-02 2020-06-23
 Sweden hCoV-19/Sweden/20-50615/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T

EPI_ISL_475575
 2020-04-02 2020-06-23
 United States hCoV-19/USA/CA-CSMC100/2020
 C241T C313T C2291T C3037T A4229C A9187G A17062C C17077T G18677T C19913T T22690C A23403G G23564T C24096T A28254T GGG28881AAC

EPI_ISL_475576
 2020-04-02 2020-06-23
 United States hCoV-19/USA/CA-CSMC101/2020
 C241T C379A C1059T C3037T C14408T A23403G G25563T C29769T

EPI_ISL_475577
 2020-04-02 2020-06-23
 United States hCoV-19/USA/CA-CSMC102/2020
 C241T C3037T C14408T G18985T A23403G A26530G

EPI_ISL_475579
 2020-04-02 2020-06-23
 United States hCoV-19/USA/CA-CSMC104/2020
 C241T C3037T C14408T G18985T A23403G A26530G

EPI_ISL_475580
 2020-04-02 2020-06-23
 United States hCoV-19/USA/CA-CSMC105/2020
 C241T C379A C1059T C3037T G9479T C14408T A23403G G25563T G28079T

EPI_ISL_475581
 2020-04-02 2020-06-23
 United States hCoV-19/USA/CA-CSMC106/2020
 C7979T T11301C G12243T T15794C A16847T TAAAA17201- G24858A C25466T G27261T AA27344TT A27354G

EPI_ISL_475582
 2020-04-02 2020-06-23
 United States hCoV-19/USA/CA-CSMC107/2020
 C241T C1059T C3037T C12468T C14408T A23403G G25563T

EPI_ISL_475583
 2020-04-02 2020-06-23
 United States hCoV-19/USA/CA-CSMC108/2020
 C241T C3037T A4748G T8883C C14408T A23403G GGG28881AAC

EPI_ISL_475587
 2020-04-02 2020-06-23
 United States hCoV-19/USA/CA-CSMC111/2020
 G7673C C9967T T10084A G10796T A15389G C15391T T17264C T24156C G26755A G26962T

EPI_ISL_475588
 2020-04-02 2020-06-23
 United States hCoV-19/USA/CA-CSMC112/2020
 C241T C1059T C3037T C14408T T22939C A23403G G25563T T27384C

EPI_ISL_475590
 2020-04-02 2020-06-23
 United States hCoV-19/USA/CA-CSMC114/2020
 C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_475709
 2020-04-02 2020-06-23
 United States hCoV-19/USA/CA-CSMC92/2020
 C241T C1059T C3037T T3897G G5018A C14408T A23403G G25563T C27577T

EPI_ISL_475712
 2020-04-02 2020-06-23
 United States hCoV-19/USA/CA-CSMC95/2020
 C884T G1397A T3160C C6468A G8653T C10156T G11083T A25980C C27970T T28688C G29742T

EPI_ISL_475713
 2020-04-02 2020-06-23
 United States hCoV-19/USA/CA-CSMC96/2020
 C241T C379A C1059T C3037T C14408T C22208T A23403G G25563T C29769T

EPI_ISL_475714
 2020-04-02 2020-06-23
 United States hCoV-19/USA/CA-CSMC97/2020
 C241T C1059T C3037T C14408T A23403G G25563T G28300T

EPI_ISL_475894
 2020-04-02 2020-06-25
 Austria hCoV-19/Austria/CeMM0527/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3264T C14408T A23403G G25555K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475932
 2020-04-02 2020-06-25
 Austria hCoV-19/Austria/CeMM0628/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G15380T G18255T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475933
 2020-04-02 2020-06-25
 Austria hCoV-19/Austria/CeMM0631/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4788Y G11083T C14805T T17247C G22180A G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476070
 2020-04-02 2020-06-25
 Hungary hCoV-19/Hungary/UD-6278/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C103T C241T C1059T C3037T C14408T A23403G G25563T G29405C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476790
 2020-04-02 2020-06-25
 United States hCoV-19/USA/CA-CZB-1773/2020
 ATTAAAGGTTTATACCTT1- C241T C1059T C3037T C14408T A21436W A23403R G25563T GAGGCCACGCGGAGTACGATCGAGT29734- AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_476791
 2020-04-02 2020-06-25
 United States hCoV-19/USA/CA-CZB-1774/2020
 T13C C241T C1059T C3037T C14408T T20799C A23403G G25563T

EPI_ISL_477816
 2020-04-02 2020-06-30
 United Kingdom hCoV-19/England/CAMB-73C6E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A A10374- C14408T G22541T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478433
 2020-04-02 2020-06-30
 United Kingdom hCoV-19/England/LOND-D6DB1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G27281T GGG28881AAC ATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29815-

EPI_ISL_478434
 2020-04-02 2020-06-30
 United Kingdom hCoV-19/England/LOND-D6DC0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC ATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29815-

EPI_ISL_478435
 2020-04-02 2020-06-30
 United Kingdom hCoV-19/England/LOND-D6DDF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5646T C14408T A23403G GGG28881AAC ATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29815-

EPI_ISL_478438
 2020-04-02 2020-06-30
 United Kingdom hCoV-19/England/LOND-D6E45/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4285T A10948G C14408T A23403G ATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29815-

EPI_ISL_478513
 2020-04-02 2020-06-30
 United Kingdom hCoV-19/England/NORT-283971/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11083T C14408T C15857T A23403G T23722A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478516
 2020-04-02 2020-06-30
 United Kingdom hCoV-19/England/NORT-283A8D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T7778G G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478517
 2020-04-02 2020-06-30
 United Kingdom hCoV-19/England/NORT-283A9C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G C9223T G11083T G13624T C14805T T17247C G26144T G26976T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479137
 2020-04-02 2020-06-30
 United Kingdom hCoV-19/England/OXON-B2322/2020
 C241T C3037T C6723T C14408T A23403G GGG28881AAC

EPI_ISL_479141
 2020-04-02 2020-06-30
 United Kingdom hCoV-19/England/OXON-B23E6/2020
 C241T C1059T C3037T C14408T G21974T A23403G G24368T G25563T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_479148
 2020-04-02 2020-06-30
 United Kingdom hCoV-19/England/OXON-B24C5/2020
 C241T C3037T T3982C C14408T T17150C A23403G C25587T C27046T C28344A GGG28881AAC AAAAAAAAAAAAAAA29889-

EPI_ISL_479156
 2020-04-02 2020-06-30
 United Kingdom hCoV-19/England/OXON-B2586/2020
 C241T C313T C3037T G4109A C8090T C14408T A23403G G25456T GGG28881AAC AAAAAAAAAAAAAAAAAAAA29884-

EPI_ISL_479162
 2020-04-02 2020-06-30
 United Kingdom hCoV-19/England/OXON-B2647/2020
 C241T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_479169
 2020-04-02 2020-06-30
 United Kingdom hCoV-19/England/OXON-B2708/2020
 A1- C241T C1912T C3037T C14408T G14580T G18674A A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_480070
 2020-04-02 2020-07-01
 Japan hCoV-19/Japan/PG-0401/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C313T C823T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480071
 2020-04-02 2020-07-01
 Japan hCoV-19/Japan/PG-0402/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G GGG28881AAC TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_480091
 2020-04-02 2020-07-01
 Japan hCoV-19/Japan/PG-0423/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480135
 2020-04-02 2020-07-01
 Japan hCoV-19/Japan/PG-0475/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T G11083T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480136
 2020-04-02 2020-07-01
 Japan hCoV-19/Japan/PG-0476/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T G11083T C14408T A23403G GGG28881AAC TAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29817-

EPI_ISL_480137
 2020-04-02 2020-07-01
 Japan hCoV-19/Japan/PG-0477/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C313T C3037T C14408T A23403G GGG28881AAC GTACGATCGAGT29747- TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_480138
 2020-04-02 2020-07-01
 Japan hCoV-19/Japan/PG-0478/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C6099T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480139
 2020-04-02 2020-07-01
 Japan hCoV-19/Japan/PG-0480/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACT1- C241T C313T C3037T C14408T A23403G G25879T GGG28881AAC GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_480140
 2020-04-02 2020-07-01
 Japan hCoV-19/Japan/PG-0481/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C12672T C14408T A23403G GGG28881AAC TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_480169
 2020-04-02 2020-07-01
 Japan hCoV-19/Japan/PG-0511/2020
 ATTAAAGGTTT1- C241T C313T C3037T C14408T A23403G G28845T GGG28881AAC G28975T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_480170
 2020-04-02 2020-07-01
 Japan hCoV-19/Japan/PG-0512/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T A3075G G4300T C14408T A23403G G25249T G25563C GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_480171
 2020-04-02 2020-07-01
 Japan hCoV-19/Japan/PG-0513/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C313T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480172
 2020-04-02 2020-07-01
 Japan hCoV-19/Japan/PG-0514/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C313T C3037T G4300T C14408T A23403G G25249T G25563C GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_480185
 2020-04-02 2020-07-01
 Japan hCoV-19/Japan/PG-0527/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480186
 2020-04-02 2020-07-01
 Japan hCoV-19/Japan/PG-0528/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACT1- C241T C313T C3037T C14408T C14697T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480203
 2020-04-02 2020-07-01
 Japan hCoV-19/Japan/PG-0547/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACT1- C241T C3037T C14408T A20268G A23403G TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_480808 MT703975
 2020-04-02 2020-07-02
 United States SARS-CoV-2/human/USA/FL-BPHL-0157/2020
 AT1- C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_480810 MT703977
 2020-04-02 2020-07-02
 United States SARS-CoV-2/human/USA/FL-BPHL-0159/2020
 AT1- C241T C1059T C1917T C3037T C14408T A23403G G25563T TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_480811 MT703978
 2020-04-02 2020-07-02
 United States SARS-CoV-2/human/USA/FL-BPHL-0160/2020
 AT1- C241T C1059T C1917T C3037T C14408T A23403G G25563T TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_480812 MT703979
 2020-04-02 2020-07-02
 United States SARS-CoV-2/human/USA/FL-BPHL-0161/2020
 ATTAAA1- C241T C1059T C3037T C6568T C14408T A23403G G25563T TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_481271 MT704125
 2020-04-02 2020-07-02
 United States SARS-CoV-2/human/USA/MD-MDH-0025/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T C14649T A23403G G25563T G29690T

EPI_ISL_481649
 2020-04-02 2020-07-03
 Finland hCoV-19/Finland/2A92SVIIC/2020
 C241T C589T C1059T C3037T C14408T A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481650
 2020-04-02 2020-07-03
 Finland hCoV-19/Finland/2A10SVIIC/2020
 C241T C3037T C14408T A20268G A23403G G24197T G26450T C28854T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481651
 2020-04-02 2020-07-03
 Finland hCoV-19/Finland/2A68SVIIIA/2020
 C241T C1059T C3037T A11983G C14408T A23403G G24368T G25563T A29683G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481652
 2020-04-02 2020-07-03
 Finland hCoV-19/Finland/2A71SVIIIA/2020
 C241T C1059T C3037T C9565T A13653G C14408T A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481653
 2020-04-02 2020-07-03
 Finland hCoV-19/Finland/2A72SVIIIA/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T C28833T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481654
 2020-04-02 2020-07-03
 Finland hCoV-19/Finland/2A77SVIIIA/2020
 C241T C1059T C3037T T11488C C14408T A23403G G24368T G25563T G28003T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481655
 2020-04-02 2020-07-03
 Finland hCoV-19/Finland/2A82SVIIIA/2020
 C241T C1059T C3037T T11488C C14408T A23403G G24368T G25563T G28003T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481748
 2020-04-02 2020-07-03
 Canada hCoV-19/Canada/NB_250/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T15354C C18877T A23403G G25563T ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_482450
 2020-04-02 2020-07-03
 United States hCoV-19/USA/OR-PROV-209/2020
 C241T C1059T C3037T G6367T C14408T C14571T A23403G G25563T

EPI_ISL_482454
 2020-04-02 2020-07-03
 United States hCoV-19/USA/OR-PROV-219/2020
 C241T C1059T C3037T C14408T A17892G A23403G G25563T

EPI_ISL_483166
 2020-04-02 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0476-SAN/2020
 ATTAAAGGTT1- C241T C1059T C3037T C11671T C14408T A23403G G25563T

EPI_ISL_483169
 2020-04-02 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0481-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_483178
 2020-04-02 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0493-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_483187
 2020-04-02 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0503-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- A2420C G4105T C8782T C17747T A17858G C18060T A22005G T28144C

EPI_ISL_483191
 2020-04-02 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0512-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T T1211G C3037T C14408T A23403G G25563T C27964T

EPI_ISL_483362
 2020-04-02 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0794-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T T1211G C3037T C14408T A23403G G25563T C27964T

EPI_ISL_483366
 2020-04-02 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0799-SAN/2020
 C32T C241T C1059T C3037T G3892T C14408T A23403G G25563T

EPI_ISL_483380
 2020-04-02 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0820-SAN/2020
 ATTAAAGGTTTATACCT1- C241T C3037T C5467T C8389T C12249T C13487T C14408T A23403G G25563T

EPI_ISL_483381
 2020-04-02 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0821-SAN/2020
 ATTAAAGG1- C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_483384
 2020-04-02 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0827-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_483440
 2020-04-02 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0981-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_483444
 2020-04-02 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0987-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T C1059T C3037T C11671T C14408T A23403G G25563T

EPI_ISL_486865
 2020-04-02 2020-07-12
 Senegal hCoV-19/Senegal/6847/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2416T C3037T C3874T G8371T C14408T C19200T A23403G G25563T T27210C AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_487689
 2020-04-02 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2976/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4999T C13730T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487733
 2020-04-02 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2983/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T2602A C3037T C14408T C16289T CG21304AA A23403G G25429T C29679T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487838
 2020-04-02 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2963/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A361G C3037T C11775T C14408T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487971
 2020-04-02 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2994/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C854T ATG1605- C11173Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488476
 2020-04-02 2020-07-14
 United Kingdom hCoV-19/England/NORT-2838ED/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241Y C1059Y A2219R C3037Y C5581Y G11083K G11521K C14408Y C14805Y G21123K C23185Y A23403R T25202K G25563K G26144K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488618
 2020-04-02 2020-07-14
 United Kingdom hCoV-19/England/NORT-2958BB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T C17410Y G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488630
 2020-04-02 2020-07-14
 United Kingdom hCoV-19/England/NORT-283B99/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G15438T A20268G A23403G T25202K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488640
 2020-04-02 2020-07-14
 United Kingdom hCoV-19/England/NORT-283AC9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1350T A2480G C2558T G11083T C14805T T25202K G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488688
 2020-04-02 2020-07-14
 United Kingdom hCoV-19/England/NORT-283ABA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3297R C14408T G15243T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488697
 2020-04-02 2020-07-14
 United Kingdom hCoV-19/England/NORT-295930/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G15438T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488699
 2020-04-02 2020-07-14
 United Kingdom hCoV-19/England/NORT-295921/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T TTA18785- A23403G T25202K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488883
 2020-04-02 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2956/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488903
 2020-04-02 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2960/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C27393T C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488911
 2020-04-02 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2968/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3428C C8127T C14408T A23403G A27660G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488939
 2020-04-02 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2955/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488942
 2020-04-02 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2979/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488974
 2020-04-02 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2984/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G9890T C9988T C14408T T17139C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488990
 2020-04-02 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2974/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3543T C14408T C16289T A23403G G23426T G25429T C27800T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488991
 2020-04-02 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2947/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G5461T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488999
 2020-04-02 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2950/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6286T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489013
 2020-04-02 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2954/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12357T C14408T C15540T T17126C A20268G A23403G C23613T C29743T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489023
 2020-04-02 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2981/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5907T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489046
 2020-04-02 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2989/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C683T C3037T G7553K C14408T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489057
 2020-04-02 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2953/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3543T C14408T C16289T A23403G G23426T G25429T C27800T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491121
 2020-04-02 2020-07-16
 Oman hCoV-19/Oman/8556/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C8655T G10265A C14408T C16293T C18395T A23403G GGG28881AAC TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856CT

EPI_ISL_491135
 2020-04-02 2020-07-16
 Oman hCoV-19/Oman/8290/2020
 ATTAAAGGTTTATACCTT1- C241T C3037T C4246T G10265A C14408T C16293T A23403G T23482C GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_491541
 2020-04-02 2020-07-17
 United Kingdom hCoV-19/Scotland/EDB657/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4752T C14408T A23403G G25563T T29588Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491578
 2020-04-02 2020-07-17
 United Kingdom hCoV-19/Scotland/EDB656/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C988T G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491921 MT776415
 2020-04-02 2020-07-17
 United States SARS-CoV-2/human/USA/VA_NIDDL_2896/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C6040T C8782T G12478A T16506C T18736C C24034T T26729C G28077C T28144C C28896G A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492066 MT775826
 2020-04-02 2020-07-19
 Poland SARS-CoV-2/human/POL/PL_P41/2020
 T10W T13W C241T C3037T C3587T G7936A C11572T C14408T A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_492069 MT775829
 2020-04-02 2020-07-19
 Poland SARS-CoV-2/human/POL/PL_P44/2020
 ATTAAA1- T10A T13A C241T C3037T C3587T G7936A C11572T C14408T A23403G GGG28881AAC C29870A

EPI_ISL_493064
 2020-04-02 2020-07-20
 United States hCoV-19/USA/WY-WYPHL-20007405/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- C241T C1059T C3037T C14408T A23403G G25563T G29553A C29870M

EPI_ISL_493125 MT791312
 2020-04-02 2020-07-20
 United States SARS-CoV-2/human/USA/WY-WYPHL-20007411/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G24977C G25563T C29870M

EPI_ISL_493126
 2020-04-02 2020-07-20
 United States hCoV-19/USA/WY-WYPHL-20007413/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C3037T C14408T A23403G G24977C G25563T

EPI_ISL_493127
 2020-04-02 2020-07-20
 United States hCoV-19/USA/WY-WYPHL-20007414/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C1059T C3037T C14408T A23403G G24977C G25563T C29870M

EPI_ISL_494230
 2020-04-02 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-168357/2020
 ATTA1- C241T C3037T C14408T C15237T T21722C A23403G G25459T GGG28881AAC

EPI_ISL_494385
 2020-04-02 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1140/2020
 ATT1- C241T C3037T C14408T A23403G C25350T C25566T

EPI_ISL_494394
 2020-04-02 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1151/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T A23403G C25350T C25566T

EPI_ISL_494409
 2020-04-02 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1167/2020
 C241T C3037T C14408T A23403G C25350T C25566T

EPI_ISL_494410
 2020-04-02 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1168/2020
 ATTAAA1- C241T C1962T C3037T C14408T A23403G C25350T C25566T

EPI_ISL_494411
 2020-04-02 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1169/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1568T C3037T C4540T G4904T G5206T C14408T A23403G C24138T C25350T

EPI_ISL_494417
 2020-04-02 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1181/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C14408T A23403G C25350T C25566T

EPI_ISL_494418
 2020-04-02 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1182/2020
 ATTAAAGGTTTA1- C241T C3037T C14408T A23403G C25350T C25566T

EPI_ISL_494419
 2020-04-02 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1183/2020
 ATTAAAGGTT1- C241T C3037T C14408T C17747T A23403G C25350T

EPI_ISL_494421
 2020-04-02 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1185/2020
 ATTAA1- C241T C3037T C4540T G4904T G5206T C14408T A23403G C24138T C25350T

EPI_ISL_494427
 2020-04-02 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1191/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C4540T G4904T G5206T C14408T A23403G C24138T C25350T

EPI_ISL_494627
 2020-04-02 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1504/2020
 ATTA1- C241T C3037T C4540T G4904T G5206T C14408T A23403G C24138T C25350T

EPI_ISL_494629
 2020-04-02 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1506/2020
 C241T C3037T C14408T A23403G C25350T C25566T

EPI_ISL_494630
 2020-04-02 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1508/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C3037T C4540T G4904T G5206T C14408T A23403G C24138T C25350T

EPI_ISL_494632
 2020-04-02 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1510/2020
 ATTAAAGGTTT1- C241T C3037T C4540T G4904T G5206T C14408T A23403G C24138T C25350T

EPI_ISL_494722
 2020-04-02 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1661/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T

EPI_ISL_494724
 2020-04-02 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1663/2020
 C241T C1059T C3037T C7932T C12473T C14408T A23403G G25563T C27964T

EPI_ISL_494726
 2020-04-02 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1665/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T C12473T C14408T A23403G G25563T C27964T

EPI_ISL_494730
 2020-04-02 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1670/2020
 ATTAAA1- C241T C3037T C14408T A23403G C25350T C25566T

EPI_ISL_494731
 2020-04-02 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1671/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGA1- C241T C1059T C3037T C14408T A23403G G25563T C27964T

EPI_ISL_494737
 2020-04-02 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1677/2020
 ATT1- C241T C1059T T1211G C3037T C14408T A23403G G24985T G25563T C27964T

EPI_ISL_494741
 2020-04-02 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1683/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T C2623A C3037T C12473T C14408T A23403G G25563T C27964T

EPI_ISL_495378 MT791914
 2020-04-02 2020-07-22
 United States SARS-CoV-2/human/USA/FL-BPHL-0472/2020
 AT1- C241T C3037T A3090G C14408T T15102C C18877T A23403G G25563T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_499285
 2020-04-02 2020-07-28
 United Kingdom hCoV-19/England/PORT-2D1E48/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5314T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_499448
 2020-04-02 2020-07-28
 United Kingdom hCoV-19/Wales/PHWC-1694BD/2020
 ATT1- C241T C3037T C6990T G11083K C14408T A23403G TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_500517
 2020-04-02 2020-07-29
 United States hCoV-19/USA/SD-UW-MAYO73/2020
 A1- C36T C241T C1059T C3037T A10323G C14408T G20274T A23403G G25563T C26625T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_500518
 2020-04-02 2020-07-29
 United States hCoV-19/USA/MN-UW-MAYO79/2020
 AT1- A31T AAC34TTT C241T C1059T C1314T C3037T C14408T A23403G G25563T A27821G AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_501169
 2020-04-02 2020-07-30
 United States hCoV-19/USA/TX-GCID-192000207/2020
 ATTAAAGGTT1- C241T C3037T C14408T G20679T A23403G AAAAAAAAAAAAAAAAAAAAAAAAA29879C

EPI_ISL_501211
 2020-04-02 2020-07-31
 Malaysia hCoV-19/Malaysia/5056/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- C6027T A10236G G11083T C13536T C14805T T17247C C17750Y C24130T G25563T G26144T C28695T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_506988
 2020-04-02 2020-08-02
 South Korea hCoV-19/Korea/KCDC2194/2020
 ATT1- C241T C3037T C14408T A23403G G27670T

EPI_ISL_506989
 2020-04-02 2020-08-02
 South Korea hCoV-19/Korea/KCDC2195/2020
 AT1- C241T C3037T C14408T A23403G G27670T

EPI_ISL_506991
 2020-04-02 2020-08-02
 South Korea hCoV-19/Korea/KCDC2197/2020
 ATTAAAGGTTTAT1- A2480G C2558T A3010G G11083T T14565C C14805T G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_507131
 2020-04-02 2020-08-03
 United Kingdom hCoV-19/England/PORT-2D1BBA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C19170T G19509A A23403G G28077T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507132
 2020-04-02 2020-08-03
 United Kingdom hCoV-19/England/PORT-2D1BC9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1457T A2480G C2558T G11083T G11771A C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507133
 2020-04-02 2020-08-03
 United Kingdom hCoV-19/England/PORT-2D1BD8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4255T C14408T G16475A A20355G A23403G A26530G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507615
 2020-04-02 2020-08-03
 United States hCoV-19/USA/MI-MDHHS-SC21361/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C203T C241T C1059T C1684T C3037T T6905G C8290T C10815Y C14408T C18839T A23403G G25563T C27641T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_507621
 2020-04-02 2020-08-03
 United States hCoV-19/USA/MI-MDHHS-SC21367/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T A5563T C14408T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_508964
 2020-04-02 2020-08-04
 France hCoV-19/France/ARA18272/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCT1- C241T C1973T C3037T C14408T G16228A G22051T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_508965
 2020-04-02 2020-08-04
 France hCoV-19/France/ARA18275/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C241T C2416T C3037T G8371T C14408T T18700G A23403G G24193A G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_508966
 2020-04-02 2020-08-04
 France hCoV-19/France/ARA18314/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCAT1- C241T C3037T G5230T C14408T G17334T A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_508967
 2020-04-02 2020-08-04
 France hCoV-19/France/ARA18366/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C241T C3037T C14408T A23403G C23481T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_508968
 2020-04-02 2020-08-04
 France hCoV-19/France/ARA18437/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGG1- C241T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_508969
 2020-04-02 2020-08-04
 France hCoV-19/France/ARA18440/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAA1- C241T C3037T C14408T C15324T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_508970
 2020-04-02 2020-08-04
 France hCoV-19/France/ARA18487/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C14408T T19839C A23403G GGG28881AAC G29751A AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_508971
 2020-04-02 2020-08-04
 France hCoV-19/France/ARA18625/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T T6511C C14408T A23403G G25563T TAAAGTTTCCATTTGGAATCTTGATTACATCATA27267- AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_508972
 2020-04-02 2020-08-04
 France hCoV-19/France/ARA18634/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGA1- C241T C337T C3037T C11747T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_508973
 2020-04-02 2020-08-04
 France hCoV-19/France/ARA18748/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTG1- C241T C313T C3037T C4551T C14408T A23403G T23605C GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_508975
 2020-04-02 2020-08-04
 France hCoV-19/France/ARA18826/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCT1- C241T C3037T C14408T C20483T C21914T A23403G G25563T G28001T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_509444 MT827206
 2020-04-02 2020-07-31
 United States SARS-CoV-2/human/USA/MD-MDH-0040/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C3037T C14408T A23403G G25563T AATCCAGTA26161- T29859A G29862A

EPI_ISL_510467
 2020-04-02 2020-08-06
 Spain hCoV-19/Spain/COV004180/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C14408T A21556G A23403G GGG28881AAC C29719A CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_510468
 2020-04-02 2020-08-06
 Spain hCoV-19/Spain/COV004181/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C14408T A20268G A23403G CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_510470
 2020-04-02 2020-08-06
 Spain hCoV-19/Spain/COV004183/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T A20268G G20931T A23403G G25218T G29734C CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_510471
 2020-04-02 2020-08-06
 Spain hCoV-19/Spain/COV004184/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C14408T A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_510474
 2020-04-02 2020-08-06
 Spain hCoV-19/Spain/COV004187/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A21556G A23403G GGG28881AAC C29719A AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_511032
 2020-04-02 2020-08-07
 Portugal hCoV-19/Portugal/PT0773/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T C15324T A23403G G28975T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511706
 2020-04-02 2020-08-08
 Portugal hCoV-19/Portugal/PT1159/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T C3037T C14408T G23126T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511710
 2020-04-02 2020-08-08
 Portugal hCoV-19/Portugal/PT1163/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T T505C C3037T C3261T C14408T A15984T C20946T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_514317
 2020-04-02 2020-08-16
 Peru hCoV-19/Peru/INS-058/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAA1- C241T C3037T C14408T T19839C A23403G GGG28881AAC ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_515346
 2020-04-02 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0065/2020
 ATTAAAGGTTTATACCT1- C241T C1059T C3037T C14408T A23403G G25563T G28655T

EPI_ISL_515523
 2020-04-02 2020-08-19
 Brazil hCoV-19/Brazil/SP-124/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G T27299C GGG28881AAC T29148C GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_517687
 2020-04-02 2020-08-24
 Peru hCoV-19/Peru/INS-059/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAA1- C241T C3037T C14408T T19839C A23403G GGG28881AAC ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_520729
 2020-04-02 2020-08-25
 United Arab Emirates hCoV-19/United Arab Emirates/L920638060/2020
 C8782T G11230T T28144C G28167A G28878A G29742A

EPI_ISL_523955
 2020-04-02 2020-08-27
 Brazil hCoV-19/Brazil/SP-128/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T C12053T G14028T A14330G C14408T T14498C G14500T A23403G G25088T GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857TC

EPI_ISL_523970
 2020-04-02 2020-08-27
 Brazil hCoV-19/Brazil/SP-171/2020
 ATTAAAGGTTTATACCTTCCCA1- GGT23AAC C241T C3037T A7981G C14408T C17436T A23403G G25088T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_523974
 2020-04-02 2020-08-27
 Brazil hCoV-19/Brazil/SP-178/2020
 TTAAAGGTTTATACCTTCCCAGGT2- C241T C3037T C14408T A23403G G25088T GGG28881AAC GGA29861ACC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_523980
 2020-04-02 2020-08-27
 Brazil hCoV-19/Brazil/SP-199/2020
 ATTAAAGGTTTATACCTTCCC1- GT24CA C241T C3037T C14408T A23403G G25088T GGG28881AAC AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863G

EPI_ISL_524621
 2020-04-02 2020-08-28
 United Kingdom hCoV-19/England/LOND-1261211/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1820A C3037T A6459G C14408T A16881G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524624
 2020-04-02 2020-08-28
 United Kingdom hCoV-19/England/LOND-12611BA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T1368C C6990T G11083T C14805T G17140A C18252T C23707T G26144T C26681T G28851T G29402K C29670T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524631
 2020-04-02 2020-08-28
 United Kingdom hCoV-19/England/LOND-12611E7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T11457C C14408T C17104Y A23403G C25350T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524632
 2020-04-02 2020-08-28
 United Kingdom hCoV-19/England/LOND-12612F3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G G29033S CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524636
 2020-04-02 2020-08-28
 United Kingdom hCoV-19/England/LOND-1261299/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2648A C3037T C9611Y C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524684
 2020-04-02 2020-08-28
 United Kingdom hCoV-19/England/LOND-1260F48/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T1368C T4608C C6990T A8170R G11083T C14805T C23707T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524690
 2020-04-02 2020-08-28
 United Kingdom hCoV-19/England/LOND-12613F0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A11537G C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524711
 2020-04-02 2020-08-28
 United Kingdom hCoV-19/England/LOND-12614DF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525648
 2020-04-02 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-36877-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T T3993C C14408T A23403G G25563T G27613T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_525649
 2020-04-02 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-36878-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_525650
 2020-04-02 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-36879-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T G4255T C4901T C10183T C14408T A20355G A23403G A26530G TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_526493
 2020-04-02 2020-09-01
 United Kingdom hCoV-19/Scotland/EDB6837/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G11083T C14805T G21255C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_527015
 2020-04-02 2020-09-03
 Australia hCoV-19/Australia/NSW2431/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C3037T C14408T A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_527408
 2020-04-02 2020-09-02
 United States hCoV-19/USA/CO-CSU-C2673-1/2020
 C241T C1059T C3037T C14408T C19983T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527410
 2020-04-02 2020-09-02
 United States hCoV-19/USA/CO-CSU-C2980-1/2020
 C241T C1059T C3037T C14408T C17172T A17429G A23403G G25563T C28849T C29160T C29370T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527416
 2020-04-02 2020-09-02
 United States hCoV-19/USA/CO-CSU-D0459-1/2020
 C241T C1059T C3037T C13568Y C14408T A23403G T25468G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527431
 2020-04-02 2020-09-02
 United States hCoV-19/USA/CO-CSU-D1060-1/2020
 C241T C1059T C3037T G8602A C14408T A23403G T25468G G25563T G29736T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527433
 2020-04-02 2020-09-02
 United States hCoV-19/USA/CO-CSU-D1068/2020
 T25W AC27MM A30M C241T C1059T C3037T G8602A C14408T A23403G T25468G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527436
 2020-04-02 2020-09-02
 United States hCoV-19/USA/CO-CSU-D1085-1/2020
 C241T C1059T C3037T G8602A C14408T A23403G T25468G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527441
 2020-04-02 2020-09-02
 United States hCoV-19/USA/CO-CSU-D1493-1/2020
 C241T C1059T C3037T C14408T A17046G C17172T A17429G A23403G G25563T C28849T C29370T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527442
 2020-04-02 2020-09-02
 United States hCoV-19/USA/CO-CSU-D1657-1/2020
 C241T C1059T C3037T G8602A C14408T A23403G T25468G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527446
 2020-04-02 2020-09-02
 United States hCoV-19/USA/CO-CSU-D1675/2020
 C241T C1059T C3037T G8602A C14408T A23403G T25468G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527449
 2020-04-02 2020-09-02
 United States hCoV-19/USA/CO-CSU-D1773/2020
 C241T C1059T C3037T G8602A T13479C C14408T A23403G T25468G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527450
 2020-04-02 2020-09-02
 United States hCoV-19/USA/CO-CSU-D1862/2020
 C241T C1059T C3037T C14408T A23403G T25468G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527451
 2020-04-02 2020-09-02
 United States hCoV-19/USA/CO-CSU-D1882-1/2020
 C241T C1059T C3037T G8602A C14408T A23403G T25468G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527453
 2020-04-02 2020-09-02
 United States hCoV-19/USA/CO-CSU-D1977/2020
 C241T C1059T C3037T G8602A C14408T A23403G T25468G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527454
 2020-04-02 2020-09-02
 United States hCoV-19/USA/CO-CSU-D1990-1/2020
 C241T C1059T C3037T G8602A C14408T A23403G T25468G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527456
 2020-04-02 2020-09-02
 United States hCoV-19/USA/CO-CSU-D2094/2020
 C241T C1059T C3037T C14408T A23403G T25468G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527458
 2020-04-02 2020-09-02
 United States hCoV-19/USA/CO-CSU-D2259/2020
 C241T C1059T C3037T G8602A C14408T A23403G T25468G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527459
 2020-04-02 2020-09-02
 United States hCoV-19/USA/CO-CSU-D2282-1/2020
 C241T C1059T C3037T C14408T A23403G T25468G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527465
 2020-04-02 2020-09-02
 United States hCoV-19/USA/CO-CSU-D2399-1/2020
 C241T C1059T C3037T G8602A C14120T C14408T A23403G T25468G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527468
 2020-04-02 2020-09-02
 United States hCoV-19/USA/CO-CSU-D2591-1/2020
 C241T C1059T C3037T G8602A C14408T A19298M TT21994YY C21998M C22000M A22003M C22009M AAA22011RWW A23403G T25468G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527472
 2020-04-02 2020-09-02
 United States hCoV-19/USA/CO-CSU-D2674/2020
 C241T C1059T C3037T C14408T C17172T A17429G A19291M A23403G G25563T C28849T C29370T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527474
 2020-04-02 2020-09-02
 United States hCoV-19/USA/CO-CSU-D2680/2020
 C241T C1059T C3037T C5243M C14408T C17172T A17429G A23403G G25563T C28849T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527477
 2020-04-02 2020-09-02
 United States hCoV-19/USA/CO-CSU-D3171/2020
 C241T C1059T C3037T G8602A C14408T A23403G T25468G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527478
 2020-04-02 2020-09-02
 United States hCoV-19/USA/CO-CSU-D3376/2020
 C241T C1059T C3037T G8602A C14408T A23403G T25468G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_528739
 2020-04-02 2020-09-08
 Malaysia hCoV-19/Malaysia/MGI-M32/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCT1- G2150T C6312A T7621C G11083T C13730T C23929T C28311T C29614T TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_528740
 2020-04-02 2020-09-08
 Malaysia hCoV-19/Malaysia/MGI-M64/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C6312A T7621C G11083T C13730T C23929T C28311T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_528741
 2020-04-02 2020-09-08
 Malaysia hCoV-19/Malaysia/MGI-M71/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C6312A T7621C G11083T C13730T C23929T C28311T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_528742
 2020-04-02 2020-09-08
 Malaysia hCoV-19/Malaysia/MGI-M76/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T C6312A T7621C G11083T C13730T C23929T C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_528991
 2020-04-02 2020-09-09
 Italy hCoV-19/Italy/ABR-IZSGC-TE10007/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T C5986T A6869W A11439G C14408T A23403G C26542T GGG28881AAC G29701T ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_529691
 2020-04-02 2020-09-10
 United Kingdom hCoV-19/Scotland/EDB6845/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3100G G3250T C3987T G10097A CC14407TT C17939T C18687T A23403G C23731T G25947T C26456T C28093T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530054
 2020-04-02 2020-09-10
 Spain hCoV-19/Spain/MD-LP51/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2205G C3037T C14408T A20055G A20268G A23403G ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_530221 MT997743
 2020-04-02 2020-09-10
 United States SARS-CoV-2/human/USA/MN-MDH-1625/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C8782T A17858G C18060T C21614T A24694T T28144C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_530231
 2020-04-02 2020-09-11
 Australia hCoV-19/Australia/QLD973/2020/P1
 ATTAAAGGTT1- C241T C2416T C3037T C10834T C14408T G19999T A23403G G25563T G28557T

EPI_ISL_530275
 2020-04-02 2020-09-11
 Australia hCoV-19/Australia/QLD1015/2020/P1
 ATTAAAGGTTTATACC1- C241T C1059T C3037T C14408T A23403G G25563T A29903-

EPI_ISL_534313
 2020-04-02 2020-09-13
 Brazil hCoV-19/Brazil/SP-316/2020
 TAAAGGTTTATACCTTCCCAG3- T25C C241T C3037T C6628T C14408T C21219T A23403G G26690T T27299C GGG28881AAC T29148C C29719T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_534875
 2020-04-02 2020-09-14
 United Kingdom hCoV-19/England/OXON-B3637/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C241T G2164A C3037T C14408T A23403G GGG28881AAC A29884R A29895C

EPI_ISL_534914
 2020-04-02 2020-09-14
 United Kingdom hCoV-19/England/OXON-B3E8A/2020
 C241T C3037T C14408T A23403G G24038T GGG28881AAC

EPI_ISL_534952
 2020-04-02 2020-09-14
 United Kingdom hCoV-19/England/OXON-B43F3/2020
 C241T C3037T C14408T A23403G G24038T GGG28881AAC

EPI_ISL_534978
 2020-04-02 2020-09-14
 United Kingdom hCoV-19/England/OXON-B4821/2020
 C241T C3037T C14408T G22592T A23403G GGG28881AAC

EPI_ISL_537721
 2020-04-02 2020-09-16
 Spain hCoV-19/Spain/CN-CSIC-97006516/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T A6502G C14408T G14857T T18990Y A20268G A23403G C25721T C28854T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_538151
 2020-04-02 2020-09-16
 Spain hCoV-19/Spain/AN-CSIC-98001776/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A2140G C3037T C14408T A20268G A23403G T28600C ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_538152
 2020-04-02 2020-09-16
 Spain hCoV-19/Spain/AN-CSIC-98001778/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1015G C2710T C3037T C9169T C14408T G16603T A20268G T20497A A23403G G29734C AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_538345
 2020-04-02 2020-09-16
 Canada hCoV-19/Canada/ON-OICR-SLB2817/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C3373A C9733T C14408T A23403G G27160R G28580T GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_538346
 2020-04-02 2020-09-16
 Canada hCoV-19/Canada/ON-OICR-SLB2818/2020
 ATTAAAGGTTT1- C44Y C241T C1059T C3037T C14408T A23403G G25217T G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_538347
 2020-04-02 2020-09-16
 Canada hCoV-19/Canada/ON-OICR-SLB2819/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2416T C3037T C14408T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_538348
 2020-04-02 2020-09-16
 Canada hCoV-19/Canada/ON-OICR-SLB2820/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A22320G A23403G G25793T T27299C GGG28881AAC T29148C AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_538349
 2020-04-02 2020-09-16
 Canada hCoV-19/Canada/ON-OICR-SLB2821/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T A22320G A23403G G25793T T27299C GGG28881AAC T29148C AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_538350
 2020-04-02 2020-09-16
 Canada hCoV-19/Canada/ON-OICR-SLB2822/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A16438G A23403G G25563T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_538351
 2020-04-02 2020-09-16
 Canada hCoV-19/Canada/ON-OICR-SLB2823/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- A2480G C2558T G11083T C14805T G26144T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_538353
 2020-04-02 2020-09-16
 Canada hCoV-19/Canada/ON-OICR-SLB2827/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C11916T C12623Y C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538469
 2020-04-02 2020-09-17
 Singapore hCoV-19/Singapore/936/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6312A C10623T G11083T C13730T T20000G C23929T C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538470
 2020-04-02 2020-09-17
 Singapore hCoV-19/Singapore/937/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T8788C C14408T A23403G G25563T G26951A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538471
 2020-04-02 2020-09-17
 Singapore hCoV-19/Singapore/564nan/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6310A C6312A G11083T C12596T C13730T C19524T C23929T C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538472
 2020-04-02 2020-09-17
 Singapore hCoV-19/Singapore/938/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8730T C13730T C14408T A23403G G25429T C27416A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538840
 2020-04-02 2020-09-17
 United Kingdom hCoV-19/England/LEED-2AA4DD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T T10453C C11195T C14408T A23403G AG28877TC GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539000
 2020-04-02 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A82B7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T19680C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539040
 2020-04-02 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8A91/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- T6515G C16762T C29272T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539065
 2020-04-02 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8BBC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C364T C8782T G11230T C23536T T28144C G28167A G28300K G28878A G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539098
 2020-04-02 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A87A9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T AAAAGATCGCTGAGATTCCTAAAGAGGAAGTTAAGCCATTTATAACTGAAAGTAAACCTT3867- C14408T G15438T A20268G A23403G C28826T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539252
 2020-04-02 2020-09-17
 Spain hCoV-19/Spain/VC-IBV-98003443/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T A6248C C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539253
 2020-04-02 2020-09-17
 Spain hCoV-19/Spain/VC-IBV-98003444/2020
 ATTAAAGGTTTA1- C241T C313T C3037T C7318T G8184A C14408T G23009T A23403G G25340A C26907A G28134A GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_539302
 2020-04-02 2020-09-17
 Belgium hCoV-19/env/Belgium/VWV-92943-N/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G5633T G19072T T19839C T27296A GGG28881AAC ACAAGGCAGATGGGCTATATAAACGTTTTCGCTTTTCCGTTTACGATATATAGTCTACTCTTGTGCAGAATGAATTCTCGTAACTACATAGCACAAGTAGATGTAGTTAACTTTAATCTCACATAGCAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29549-

EPI_ISL_539303
 2020-04-02 2020-09-17
 Belgium hCoV-19/env/Belgium/VWV-92949-N/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1704A C3037T G10097A T11627C G11648T C14618T C15324T T19839C A23403G GCGTTCTTCGGAATGTCGCGCATTGGCATGGAAGTCACACCTTCGGGAACGTGGTTGACCTACACAGGTGCCATCAAATTGGATGACAAAGATCCAAATTTCAAAGATCAAGTCATTTTGCTGAATAAGCATATTGACGCATACAAAACATTCCCACCAACAGAGCCTAAAAAGGACAAAAAGAAGAAGGCTGATGAAACTCAAGCCTTACCGCAGAGACAGAAGAAACAGCAAACTGTGACTCTTCTTCCTGCTGCAGATTTGGATGATTTCTCCAAACAATTGCAACAATCCATGAGCAGTGCTGACTCAACTCAGGCCTAAACTCATGCAGACCACACAAGGCAGATGGGCTATATAAACGTTTTCGCTTTTCCGTTTACGATATATAGTCTACTCTTGTGCAGAATGAATTCTCGTAACTACATAGCACAAGTAGATGTAGTTAACTTTAATCTCACATAGCAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29210-

EPI_ISL_539311
 2020-04-02 2020-09-17
 Netherlands hCoV-19/env/Netherlands/ZH-92965-N/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G9269T C10349T C14408T C17827T A23403G G25459T GGG28881AAC TCAGCGTTCTTCGGAATGTCGCGCATTGGCATGGAAGTCACACCTTCGGGAACGTGGTTGACCTACACAGGTGCCATCAAATTGGATGACAAAGATCCAAATTTCAAAGATCAAGTCATTTTGCTGAATAAGCATATTGACGCATACAAAACATTCCCACCAACAGAGCCTAAAAAGGACAAAAAGAAGAAGGCTGATGAAACTCAAGCCTTACCGCAGAGACAGAAGAAACAGCAAACTGTGACTCTTCTTCCTGCTGCAGATTTGGATGATTTCTCCAAACAATTGCAACAATCCATGAGCAGTGCTGACTCAACTCAGGCCTAAACTCATGCAGACCACACAAGGCAGATGGGCTATATAAACGTTTTCGCTTTTCCGTTTACGATATATAGTCTACTCTTGTGCAGAATGAATTCTCGTAACTACATAGCACAAGTAGATGTAGTTAACTTTAATCTCACATAGCAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29207-

EPI_ISL_541772
 2020-04-02 2020-09-23
 United Kingdom hCoV-19/England/LOND-1286E21/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6865K C12073Y C14408T A23403G C25824Y G28048K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541868
 2020-04-02 2020-09-23
 Lithuania hCoV-19/Lithuania/MR-LUHS-Eilnr6/2020
 A1- C241T C1059T C3037T C6128T C14408T C20544T A23403G G25563T AAAAAAAAAAAAAA29890-

EPI_ISL_542600
 2020-04-02 2020-09-23
 United States hCoV-19/USA/TX-HMH-1235/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T130C C241T C3037T T5065C C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542611
 2020-04-02 2020-09-23
 United States hCoV-19/USA/TX-HMH-1249/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T130C C241T C3037T T5065C C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542618
 2020-04-02 2020-09-23
 United States hCoV-19/USA/TX-HMH-1264/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C11074T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542796
 2020-04-02 2020-09-23
 United States hCoV-19/USA/TX-HMH-1727/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10188T C14408T A23403G T24982C G25563T C27964T C29541T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542799
 2020-04-02 2020-09-23
 United States hCoV-19/USA/TX-HMH-1732/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G10096A C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542800
 2020-04-02 2020-09-23
 United States hCoV-19/USA/TX-HMH-1733/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6616G G14118T C14408T G15243T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542806
 2020-04-02 2020-09-23
 United States hCoV-19/USA/TX-HMH-1739/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C9166T G12521A C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544517
 2020-04-02 2020-09-24
 United States hCoV-19/USA/TX-HMH-509/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A10840G C13138T C14408T G15243T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544532
 2020-04-02 2020-09-24
 United States hCoV-19/USA/TX-HMH-511/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C7124T C8782T C9561T T18736C C24034T C25433T T26729C C26895T G28077C T28144C A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544538
 2020-04-02 2020-09-24
 United States hCoV-19/USA/TX-HMH-512/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6145T C14408T C14786T C21575T A23403G G24077T C29466T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544545
 2020-04-02 2020-09-24
 United States hCoV-19/USA/TX-HMH-513/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T A28675G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544579
 2020-04-02 2020-09-24
 United States hCoV-19/USA/TX-HMH-518/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4931A C14408T C23191T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545880
 2020-04-02 2020-09-24
 United States hCoV-19/USA/TX-HMH-863/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545886
 2020-04-02 2020-09-24
 United States hCoV-19/USA/TX-HMH-869/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T C27964T C28099T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545891
 2020-04-02 2020-09-24
 United States hCoV-19/USA/TX-HMH-874/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C9962T C10319T C14408T C20698T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546834
 2020-04-02 2020-09-24
 United States hCoV-19/USA/TX-HMH-754/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6616G G14118T C14408T G15243T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546843
 2020-04-02 2020-09-24
 United States hCoV-19/USA/TX-HMH-755/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4633T A9737G C10319T C14408T C21575T G22017T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546868
 2020-04-02 2020-09-24
 United States hCoV-19/USA/TX-HMH-758/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T C26013T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546913
 2020-04-02 2020-09-24
 United States hCoV-19/USA/TX-HMH-765/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C6040T C8782T C8950T G12478A T18736C C24034T T26729C G28077C T28144C C28896G C29451T A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547069
 2020-04-02 2020-09-24
 United States hCoV-19/USA/TX-HMH-586/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6032A C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_548123
 2020-04-02 2020-09-25
 New Zealand hCoV-19/New Zealand/AUK-ESR-20VR2095/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T19839C A23403G C24099T T25303C C28101A GGG28881AAC ATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29833-

EPI_ISL_549009
 2020-04-02 2020-09-28
 Belgium hCoV-19/env/Belgium/VWV-92949-I/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T G702T A23403G ATGATTTCTCCAAACAATTGCAACAATCCATGAGCAGTGCTGACTCAACTCAGGCCTAAACTCATGCAGACCACACAAGGCAGATGGGCTATATAAACGTTTTCGCTTTTCCGTTTACGATATATAGTCTACTCTTGTGCAGAATGAATTCTCGTAACTACATAGCACAAGTAGATGTAGTTAACTTTAATCTCACATAGCAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29475-

EPI_ISL_549022
 2020-04-02 2020-09-28
 Netherlands hCoV-19/env/Netherlands/ZH-92965-I/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T15939C C19170T A23403G C28115T GGG28881AAC ACAAGGCAGATGGGCTATATAAACGTTTTCGCTTTTCCGTTTACGATATATAGTCTACTCTTGTGCAGAATGAATTCTCGTAACTACATAGCACAAGTAGATGTAGTTAACTTTAATCTCACATAGCAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29549-

EPI_ISL_560595
 2020-04-02 2020-09-29
 France hCoV-19/France/HDF8244/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C4320T C14408T C21302T C21304A A23403G G25563T C25688T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560628
 2020-04-02 2020-09-29
 France hCoV-19/France/GE8795/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1659A C3037T G3838T C14408T C15324T A23403G G28985T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560746
 2020-04-02 2020-09-29
 United States hCoV-19/USA/MN-MDH-1659/2020
 ATTAAAG1- A2480G C2558T C10908T G11083T C14805T G26144T G28851C GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_560747
 2020-04-02 2020-09-29
 United States hCoV-19/USA/MN-MDH-1660/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- A2480G C2558T C10908T G11083T C14805T G26144T G28851C CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_560751
 2020-04-02 2020-09-29
 United States hCoV-19/USA/MN-MDH-1664/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C8782T C17747T A17858G C18060T A24694T T28144C G28812T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_565987
 2020-04-02 2020-09-30
 United States hCoV-19/USA/MI-MDHHS-SC21927/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T C14408T A23403G G25563T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_568873
 2020-04-02 2020-10-02
 Malaysia hCoV-19/Malaysia/MGI-M23/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C6312A T7621C G11083T C13730T C23929T C28311T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_568909
 2020-04-02 2020-10-02
 France hCoV-19/France/IHU-0641/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

MT300186
 2020-04-02 2020-04-03
 United States SARS-CoV-2/human/USA/UNC_200173/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T C26801T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

MT477850
 2020-04-02 2020-05-14
 United States SARS-CoV-2/human/USA/AK092/2020
 ATTAAAGGTTTATA1- C241T T1978A C3037T C6504T C12781T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

MT627756
 2020-04-02 2020-06-16
 United States SARS-CoV-2/human/USA/WA-S588/2020
 ATTAAAGGTTTAT1- C8782T A13712G C17747T C17766T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

MT671826
 2020-04-02 2020-06-26
 United States SARS-CoV-2/human/USA/CA-CZB-1773/2020
 ATTAAAGGTTTATACCTT1- C241T C1059T C3037T C14408T A21436W A23403R G25563T GAGGCCACGCGGAGTACGATCGAGT29734- AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT671827
 2020-04-02 2020-06-26
 United States SARS-CoV-2/human/USA/CA-CZB-1774/2020
 T13C C241T C1059T C3037T C14408T T20799C A23403G G25563T

MT704317
 2020-04-02 2020-07-02
 United States SARS-CoV-2/Panthera tigris/USA/P4_TW_Vero-ATCC/2020
 C241T C1059T C3037T C14408T A23403G C25413T G25563T CTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29803-

MT706206
 2020-04-02 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-85/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11417T T14073C C14408T A23403G A23947G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706207
 2020-04-02 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-86/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706208
 2020-04-02 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-87/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C7945T CC14407TT A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706219
 2020-04-02 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-99/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T15354C C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706248
 2020-04-02 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-255/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T A12110G G16381A T17877C C20316T G25500T C26192T G26211T T28144C G28878A G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT810511
 2020-04-02 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1504-CS1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C4540T G4904T G5206T C14408T A23403G C24138T C25350T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810513
 2020-04-02 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1506-CS2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A23403G C25350T C25566T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810514
 2020-04-02 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1508-CS1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C4540T G4904T G5206T C14408T A23403G C24138T C25350T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810516
 2020-04-02 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1510-CS2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C4540T G4904T G5206T C14408T A23403G C24138T C25350T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810527
 2020-04-02 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1661-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T A23403G G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810529
 2020-04-02 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1663-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C7932T C12473T C14408T A23403G G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810531
 2020-04-02 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1665-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C12473T C14408T A23403G G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810535
 2020-04-02 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1670-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A23403G C25350T C25566T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810536
 2020-04-02 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1671-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T A23403G G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810542
 2020-04-02 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1677-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T T1211G C3037T C14408T A23403G G24985T G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810546
 2020-04-02 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1683-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C2623A C3037T C12473T C14408T A23403G G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810579
 2020-04-02 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0458-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C4540T G4904T G5206T C14408T A23403G C24138T C25350T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810612
 2020-04-02 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1140-CS2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A23403G C25350T C25566T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810621
 2020-04-02 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1151-CS2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A23403G C25350T C25566T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810636
 2020-04-02 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1167-CS2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A23403G C25350T C25566T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810637
 2020-04-02 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1168-CS2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1962T C3037T C14408T A23403G C25350T C25566T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810638
 2020-04-02 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1169-CS2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1568T C3037T C4540T G4904T G5206T C14408T A23403G C24138T C25350T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810644
 2020-04-02 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1181-CS2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A23403G C25350T C25566T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810645
 2020-04-02 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1182-CS2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A23403G C25350T C25566T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810646
 2020-04-02 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1183-CS2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T C17747T A23403G C25350T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810648
 2020-04-02 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1185-CS2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C4540T G4904T G5206T C14408T A23403G C24138T C25350T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810654
 2020-04-02 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1191-CS2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C4540T G4904T G5206T C14408T A23403G C24138T C25350T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810941
 2020-04-02 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0224-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- G1401A A5405G G8131T C8782T C17747T A17858G C18060T T28144C CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811185
 2020-04-02 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0476-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C11671T C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811188
 2020-04-02 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0481-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811196
 2020-04-02 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0493-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A20268G A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811205
 2020-04-02 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0503-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- A2420C G4105T C8782T C17747T A17858G C18060T A22005G T28144C CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811209
 2020-04-02 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0512-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T T1211G C3037T C14408T A23403G G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811374
 2020-04-02 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0794-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T T1211G C3037T C14408T A23403G G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811378
 2020-04-02 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0799-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T G3892T C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811392
 2020-04-02 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0820-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C5467T C8389T C12249T C13487T C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811393
 2020-04-02 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0821-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811395
 2020-04-02 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0827-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811447
 2020-04-02 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0981-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A20268G A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811451
 2020-04-02 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0987-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C11671T C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811667
 2020-04-02 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0153-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T A23403G C25006T G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811669
 2020-04-02 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0155-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C10319T C14408T A23403G CGATAC25493- G25563T T27322G C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811670
 2020-04-02 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0156-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T T2845C C3037T G3871T C14408T G17278T A23403G G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811671
 2020-04-02 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0157-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C10319T C14408T G15372T A23403G G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811673
 2020-04-02 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0159-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T A23403G G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811695
 2020-04-02 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0265-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T G6362A C7815T C10188T C14408T A23403G T24982C G25563T T26409C C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811699
 2020-04-02 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0269-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T G12988T C14408T C21302T A23403G G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811707
 2020-04-02 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0277-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- T469C C1059T C3037T C9319A C10319T C12085T C14408T A23403G C23506T G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811721
 2020-04-02 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0291-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T A23403G C23638T G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811737
 2020-04-02 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0307-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C9603T C10319T C11344T C14408T A23403G G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT873055
 2020-04-02 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00043/2020
 ATTAAA1- C241T C2416T C3037T A5725G T8855A C14408T C16887T G20247T A23403G C24096A G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

MT873153
 2020-04-02 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00024/2020
 C241T T833C C1059T C3037T C14408T C16616T A23403G G25563T C27964T

MT873161
 2020-04-02 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00030/2020
 ATTAAA1- C241T C2416T C3037T C14408T A23403G G25563T G26233T

MT873177
 2020-04-02 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00040/2020
 G105T C241T C3037T C14408T C18877T A23403G G25563T

MT873178
 2020-04-02 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00047/2020
 ATTAAA1- C241T C1059T C3037T A11772G G12038A C14408T C20806T A23403G G25563T

MT873220
 2020-04-02 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00032/2020
 C241T C2416T C3037T C14408T A23403G G25563T G26233T

MT873254
 2020-04-02 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00025/2020
 C241T C2416T C3037T A5725G C14408T C16887T A23403G C24096A G25563T

MT873308
 2020-04-02 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00023/2020
 C241T C2416T C3037T A5725G C14408T C16887T A23403G C24096A G25563T

MT873320
 2020-04-02 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00050/2020
 C241T C2416T C3037T A5725G C14408T C16887T A23403G C24096A G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MT873323
 2020-04-02 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00036/2020
 G105T C241T C3037T C14408T C18877T A23403G G25563T

MT873398
 2020-04-02 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00028/2020
 ATTAAA1- C241T C1059T C1917T C3037T C14408T A17047G G20005A A23403G G25563T

MT873404
 2020-04-02 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00034/2020
 C241T C2416T C3037T C8281T C14408T A22007T A23403G G25563T G26233T

MT873419
 2020-04-02 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00027/2020
 C241T C2416T C3037T C14408T A23403G G25563T T29452C

MT873429
 2020-04-02 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00029/2020
 C241T C2416T C3037T C8281T C14408T A22007T A23403G G25563T G26233T

MT873431
 2020-04-02 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00051/2020
 ATTAAA1- C241T C2416T C3037T A5725G C14408T C16887T A23403G C24096A G25563T

MT873438
 2020-04-02 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00042/2020
 A1- C241T C2416T C3037T A5725G C14408T C16887T A23403G C24096A G25563T

MT873441
 2020-04-02 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00031/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C657T C1059T C3037T G12038A C14408T A23403G G25563T

MT873480
 2020-04-02 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00048/2020
 ATTAAA1- C241T C2416T C3037T T6931C C14408T A23403G G24794T G25563T G26233T

MT873487
 2020-04-02 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00038/2020
 G105T C241T C3037T C14408T C18877T A23403G G25563T

MT873489
 2020-04-02 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00039/2020
 ATTAAA1- C241T C2416T C3037T A5725G C14408T C16887T A23403G C24096A G25563T

MT873505
 2020-04-02 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00021/2020
 C241T C2416T C3037T C14408T A23403G G25563T G26233T

MT877309
 2020-04-02 2020-08-12
 United States SARS-CoV-2/human/USA/Yale-263/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C11916T C14408T T17901Y C18998T A23403G G25563T G29540A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT877315
 2020-04-02 2020-08-12
 United States SARS-CoV-2/human/USA/Yale-271/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T6882C C13730T C14408T A23403G G25429T G28079T C29732G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT877320
 2020-04-02 2020-08-12
 United States SARS-CoV-2/human/USA/Yale-277/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G C23453T G25563T GGAGTACGATCGAGT29744- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

NMDC60013195
 2020-04-02 2020-06-01
 China hCoV-19/Guangzhou/ID116/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_418631
 2020-04-03 2020-03-30
 Belgium hCoV-19/Belgium/ULG-6649/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14262T C14408T A23403G G25563T G29179T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_419707
 2020-04-03 2020-04-03
 Spain hCoV-19/Spain/Cataluna201397/2020
 C241T C3037T C14408T A20268G A23403G AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_422462
 2020-04-03 2020-04-10
 United States hCoV-19/USA/WI-GMF-00744/2020
 C241T C1059T C3037T A4956G C6363T C9866T C11962T C14408T A14747G A20755C A23403G G25563T

EPI_ISL_423588
 2020-04-03 2020-04-12
 United Kingdom hCoV-19/England/20148006604/2020
 C241T C3037T C14408T T19839C C21648T A23403G C26681T GGG28881AAC

EPI_ISL_424630
 2020-04-03 2020-04-13
 Belgium hCoV-19/Belgium/ULG-10067/2020
 C241T C3037T C7772T C14408T A23403G GGG28881AAC

EPI_ISL_424631
 2020-04-03 2020-04-13
 Belgium hCoV-19/Belgium/ULG-10072/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_424633
 2020-04-03 2020-04-13
 Belgium hCoV-19/Belgium/ULG-10069/2020
 C241T C3037T C11962T C14408T C15324T A23403G T25827C

EPI_ISL_424640
 2020-04-03 2020-04-13
 Belgium hCoV-19/Belgium/ULG-10081/2020
 C241T A618G C3037T G3994A C5694T C14408T C15324T A23403G

EPI_ISL_425147
 2020-04-03 2020-04-14
 United States hCoV-19/USA/WI-UW-90/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11417T T14073C C14408T A23403G A23947G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425157
 2020-04-03 2020-04-14
 United States hCoV-19/USA/WI-UW-100/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11417T T14073C C14408T A23403G A23947G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425160
 2020-04-03 2020-04-14
 United States hCoV-19/USA/WI-UW-103/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11417T T14073C C14408T A23403G A23947G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_426160
 2020-04-03 2020-04-15
 United States hCoV-19/USA/WI-GMF-00921/2020
 C241T C1059T C3037T C9866T C14408T A14747G A20755C G22017T A23403G G25563T

EPI_ISL_426472 MT350254
 2020-04-03 2020-04-17
 United States SARS-CoV-2/human/USA/VA-DCLS-0065/2020
 A1- C241T C313T C3037T C7815T C14408T C18555T A23403G GGG28881AAC C29614T

EPI_ISL_426473 MT350255
 2020-04-03 2020-04-17
 United States SARS-CoV-2/human/USA/VA-DCLS-0066/2020
 ATTA1- C241T C313T C3037T C7815T C14408T A23403G GGG28881AAC C29614T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_426474 MT350256
 2020-04-03 2020-04-17
 United States SARS-CoV-2/human/USA/VA-DCLS-0067/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C313T C3037T C7815T C14408T A23403G GGG28881AAC C29614T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_427092 MT451578
 2020-04-03 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC820/2020
 C241T C1059T C3037T C10851T C14183T C14408T A23403G G25563T C29732T

EPI_ISL_427094 MT451580
 2020-04-03 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC823/2020
 C241T C1059T C3037T C10851T C14183T C14408T A23403G G25563T C29732T

EPI_ISL_427095 MT451581
 2020-04-03 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC824/2020
 C241T C1059T C3037T C10851T C14183T C14408T A23403G G25563T

EPI_ISL_427096 MT451582
 2020-04-03 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC828/2020
 C241T C3037T C10755T C12854T C14408T C19813T A23403G C25587T GGG28881AAC G29745T

EPI_ISL_427313
 2020-04-03 2020-04-18
 Russia hCoV-19/Russia/StPetersburg-RII4532V/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_427316
 2020-04-03 2020-04-18
 Russia hCoV-19/Russia/StPetersburg-RII4584S/2020
 C3037T C14408T A23403G C26750T GGG28881AAC

EPI_ISL_427317
 2020-04-03 2020-04-18
 Russia hCoV-19/Russia/StPetersburg-RII4585S/2020
 C3037T C14408T A23403G C26750T GGG28881AAC

EPI_ISL_427318
 2020-04-03 2020-04-18
 Russia hCoV-19/Russia/StPetersburg-RII4591S/2020
 T52C C117T C228T C241T C3037T C14408T A23403G C26750T GGG28881AAC

EPI_ISL_427349
 2020-04-03 2020-04-18
 Belgium hCoV-19/Belgium/ULG-10098/2020
 C241T C2113T C3037T C7765T C14408T C17690T C18877T A18971G A23403G G25563T T25899C

EPI_ISL_427357
 2020-04-03 2020-04-18
 Belgium hCoV-19/Belgium/ULG-10106/2020
 C241T C2113T C3037T C7765T C14408T C17690T C18877T A23403G G25563T

EPI_ISL_427503
 2020-04-03 2020-04-18
 United States hCoV-19/USA/NY-NYUMC208/2020
 C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_427504
 2020-04-03 2020-04-18
 United States hCoV-19/USA/NY-NYUMC209/2020
 C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_427505
 2020-04-03 2020-04-18
 United States hCoV-19/USA/NY-NYUMC210/2020
 C8078T G11083T C14805T T17247C G26144T

EPI_ISL_427507
 2020-04-03 2020-04-18
 United States hCoV-19/USA/NY-NYUMC212/2020
 C241T C1059T C3037T C14408T G19072T G22203T A23403G G25563T

EPI_ISL_427508
 2020-04-03 2020-04-18
 United States hCoV-19/USA/NY-NYUMC213/2020
 C241T C3037T C14408T A23403G G25273T T25815C GGG28881AAC

EPI_ISL_427509
 2020-04-03 2020-04-18
 United States hCoV-19/USA/NY-NYUMC214/2020
 C241T C1059T C3037T C14408T C15277T A23403G G25563T C29077T

EPI_ISL_427511
 2020-04-03 2020-04-18
 United States hCoV-19/USA/NY-NYUMC216/2020
 C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_427512
 2020-04-03 2020-04-18
 United States hCoV-19/USA/NY-NYUMC217/2020
 C241T C1059T C3037T C11916T C14408T A23403G G24086A G25563T

EPI_ISL_427513
 2020-04-03 2020-04-18
 United States hCoV-19/USA/NY-NYUMC218/2020
 C241T C1059T C3037T G6358A C11916T C14408T G17014T C18998T A23403G G25563T G29540A

EPI_ISL_427514
 2020-04-03 2020-04-18
 United States hCoV-19/USA/NY-NYUMC219/2020
 C241T C1059T T1582C C3037T C10015T C11916T C14408T C18744T C18998T A23403G G25563T G29540A

EPI_ISL_427628
 2020-04-03 2020-04-19
 United States hCoV-19/USA/NY-NYUMC228/2020
 C241T C1059T C3037T C3622T C14408T A23403G G25563T C27549T

EPI_ISL_428758
 2020-04-03 2020-04-22
 United States hCoV-19/USA/NY-NYUMC244/2020
 C241T C3037T C14408T C18877T A23403G G25563T GC28968CT

EPI_ISL_428759
 2020-04-03 2020-04-22
 United States hCoV-19/USA/NY-NYUMC245/2020
 C241T C3037T C6198T C14408T C18877T A23403G G25563T

EPI_ISL_428760
 2020-04-03 2020-04-22
 United States hCoV-19/USA/NY-NYUMC246/2020
 C241T C1059T C3037T C6582T C14408T A23403G G25563T

EPI_ISL_428762
 2020-04-03 2020-04-22
 United States hCoV-19/USA/NY-NYUMC248/2020
 C241T C1059T C3037T C10851T C14408T A23403G G25563T

EPI_ISL_428765
 2020-04-03 2020-04-22
 United States hCoV-19/USA/NY-NYUMC251/2020
 C241T C3037T C14408T C18877T A23403G G25563T

EPI_ISL_428766
 2020-04-03 2020-04-22
 United States hCoV-19/USA/NY-NYUMC252/2020
 C241T C1059T C3037T G11527A C11916T C14408T A23403G G25563T

EPI_ISL_428945
 2020-04-03 2020-04-22
 Luxembourg hCoV-19/Luxembourg/LNS3702558/2020
 C241T C3037T C14408T A23403G G24794T ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_428949
 2020-04-03 2020-04-22
 Luxembourg hCoV-19/Luxembourg/LNS0078676/2020
 C241T C3037T C14408T A23403G G24794T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_428961
 2020-04-03 2020-04-22
 Luxembourg hCoV-19/Luxembourg/LNS9322962/2020
 C241T C3037T G4255T C13517T C14408T A23403G A26530G CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_429018 MT385442
 2020-04-03 2020-04-23
 United States SARS-CoV-2/human/USA/CA-CZB0750/2020
 C241T C1059T C3037T C11916T C13252T C14408T A23403G C23604T G25563T

EPI_ISL_429028 MT385452
 2020-04-03 2020-04-23
 United States SARS-CoV-2/human/USA/CA-CZB0746/2020
 C8782T C17747T A17858G C18060T G20002T T28144C

EPI_ISL_429204
 2020-04-03 2020-04-23
 Switzerland hCoV-19/Switzerland/GE7617/2020
 ATTAAAG1- C241T C3037T C14408T C15324T C16111T A23403G C24844T C29119T

EPI_ISL_429207
 2020-04-03 2020-04-23
 Switzerland hCoV-19/Switzerland/GE1184/2020
 ATTAAAGGTT1- A187G C241T C3037T C14408T C20389T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_429219
 2020-04-03 2020-04-23
 Switzerland hCoV-19/Switzerland/GE2453/2020
 ATTAAAGGTTT1- C241T C3037T C14408T A20268G A23403G C26340T C28854T

EPI_ISL_429980 MT415904
 2020-04-03 2020-04-24
 United States SARS-CoV-2/human/USA/VA-DCLS-0081/2020
 AT1- C241T C2416T C3037T G4523A C10712T C14408T A23403G G25563T

EPI_ISL_430354
 2020-04-03 2020-04-26
 United States hCoV-19/USA/NY-NYUMC327/2020
 C241T C1059T C3037T C11916T C12473T C14408T G21989T C23230T A23403G G25563T C29109T

EPI_ISL_430357
 2020-04-03 2020-04-26
 United States hCoV-19/USA/NY-NYUMC330/2020
 C241T C3037T C14408T C16393T C16733T G18394T C18754G G23120T A23403G G28357C

EPI_ISL_430467
 2020-04-03 2020-04-27
 India hCoV-19/India/S11/2020
 ATTAAAGGTTTATAC1- C241T C3037T C13730T C14408T A16838C A23403G G27987T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_430533 MT451708
 2020-04-03 2020-04-27
 Australia SARS-CoV-2/human/AUS/VIC1037/2020
 C241T C3037T C3261T C14408T C20320T A23403G GGG28881AAC G29254T

EPI_ISL_430536 MT451711
 2020-04-03 2020-04-27
 Australia SARS-CoV-2/human/AUS/VIC1041/2020
 C241T C1059T C3037T C14408T A23403G G25563T C29738T

EPI_ISL_430538 MT451712
 2020-04-03 2020-04-27
 Australia SARS-CoV-2/human/AUS/VIC1042/2020
 C1076T G1397A G8852A G11083T T22451W C27964T T28688C G29742T

EPI_ISL_430539 MT451713
 2020-04-03 2020-04-27
 Australia SARS-CoV-2/human/AUS/VIC1043/2020
 C1076T G1397A G11083T T14466K C27964T T28688C G29742T

EPI_ISL_430550 MT451716
 2020-04-03 2020-04-27
 Australia SARS-CoV-2/human/AUS/VIC1046/2020
 C241T C1059T C3037T C14408T G23311T A23403G G25563T

EPI_ISL_430808
 2020-04-03 2020-04-27
 Argentina hCoV-19/Argentina/PAIS_A017/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATC1- C241T C3037T C4002T G10097A G11083T C13536T C14408T A23403G C23731T G25660T GGG28881AAC TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_430974 MT412331
 2020-04-03 2020-04-28
 United States SARS-CoV-2/human/USA/WA-UW-6399/2020
 A1- C36T C241T C1059T C3037T C14408T A23403G G25563T G28881T AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_430975 MT412332
 2020-04-03 2020-04-28
 United States SARS-CoV-2/human/USA/WA-UW-6400/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- AACC34TTTA C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_430976 MT412333
 2020-04-03 2020-04-28
 United States SARS-CoV-2/human/USA/WA-UW-6403/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C3037T C14408T C16750T A23403G G25563T G29553A AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_430979 MT412336
 2020-04-03 2020-04-28
 United States SARS-CoV-2/human/USA/WA-UW-6410/2020
 A4- C36T C241T C1059T C3037T C14408T A23403G G25563T G29553A

EPI_ISL_430980 MT412337
 2020-04-03 2020-04-28
 United States SARS-CoV-2/human/USA/WA-UW-6417/2020
 ATTAAAGG1- ATACCTTCCCAGGTAACAAACC12- C36T C241T C1059T C3037T C6040T C9360T C11036T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_432237
 2020-04-03 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-2A03D/2020
 ATTA1- C241T C3037T G10097A C14408T C17678T C21575T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_432294
 2020-04-03 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-29FD7/2020
 AT1- C241T C3037T G9190C C14408T T17126C A20268G A23403G G25494T

EPI_ISL_432343
 2020-04-03 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-29FAA/2020
 C241T C3037T C14408T G21624T A23403G GGG28881AAC

EPI_ISL_432541
 2020-04-03 2020-04-29
 United Kingdom hCoV-19/England/SHEF-CD2AF/2020
 C241T C3037T C4002T G10097A G11083T C13536T C14408T A23403G C23731T C27513T GGG28881AAC

EPI_ISL_432836
 2020-04-03 2020-04-29
 United Kingdom hCoV-19/England/SHEF-C715D/2020
 C241T C3037T C9165T C14408T A23403G GGG28881AAC

EPI_ISL_432850
 2020-04-03 2020-04-29
 United Kingdom hCoV-19/England/SHEF-C7937/2020
 C241T C3037T C14408T G22427A A23403G G27441T GGG28881AAC

EPI_ISL_433222
 2020-04-03 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB682/2020
 C12710T C28854T

EPI_ISL_433223
 2020-04-03 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB689/2020
 C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_433236
 2020-04-03 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB753/2020
 C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_433238
 2020-04-03 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB766/2020
 C241T C541T C3037T C14408T C21549T A23403G GGG28881AAC

EPI_ISL_433240
 2020-04-03 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB773/2020
 C934T A2480G C2558T G11083T C14805T G26144T C27059T

EPI_ISL_433241
 2020-04-03 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB774/2020
 C241T C3037T C10798A C13862T C14408T A23403G C28836T

EPI_ISL_433242
 2020-04-03 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB781/2020
 C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_433243
 2020-04-03 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB787/2020
 C241T C1059T C1076T C3037T C10582T C14408T A23403G G25563T C26461T

EPI_ISL_433245
 2020-04-03 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB789/2020
 C241T C3037T A3215G C14408T G15438T A20268G A23403G

EPI_ISL_433246
 2020-04-03 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB795/2020
 C241T C3037T C14408T C21549T A23403G GGG28881AAC

EPI_ISL_433249
 2020-04-03 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB807/2020
 C241T C3037T A3911G C14408T A23403G C26028T

EPI_ISL_433600
 2020-04-03 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR1493/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_433603
 2020-04-03 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR1500/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T C15017T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_433607
 2020-04-03 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR1519/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6441G C14408T A23403G G25429T A28841G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_433608
 2020-04-03 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR1521/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4540T T5104C C8782T T9477A C14805T C25714T G25979T C26029A T28144C C28657T C28863T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_433614
 2020-04-03 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR1550/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2536T C3037T C10582T C14408T A23403G G25429T G28808A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_433615
 2020-04-03 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR1554/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3425T C14408T A20268G A23403G ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_433666
 2020-04-03 2020-04-29
 United Kingdom hCoV-19/England/CAMB-73B16/2020
 C241T C3037T C14408T T19839C A23403G C26681T A27044C GGG28881AAC

EPI_ISL_433667
 2020-04-03 2020-04-29
 United Kingdom hCoV-19/England/CAMB-73B61/2020
 C241T C3037T C14408T A23403G C25350T

EPI_ISL_433668
 2020-04-03 2020-04-29
 United Kingdom hCoV-19/England/CAMB-73B70/2020
 A187G C241T C3037T C14408T A23403G

EPI_ISL_433669
 2020-04-03 2020-04-29
 United Kingdom hCoV-19/England/CAMB-73B8F/2020
 C241T C3037T C14408T G22111T A23403G C26028T GGG28881AAC

EPI_ISL_433671
 2020-04-03 2020-04-29
 United Kingdom hCoV-19/England/CAMB-73BAD/2020
 G160T C241T C3037T C13862T C14408T G16741T T17565C A23403G G26529T C28836T

EPI_ISL_433672
 2020-04-03 2020-04-29
 United Kingdom hCoV-19/England/CAMB-73BBC/2020
 C241T C1059T C3037T C9286T C14408T A23403G G25563T G28899C

EPI_ISL_433673
 2020-04-03 2020-04-29
 United Kingdom hCoV-19/England/CAMB-73BCB/2020
 G160T C241T C3037T C13862T C14408T G16741T T17565C A23403G G26529T C28836T

EPI_ISL_433674
 2020-04-03 2020-04-29
 United Kingdom hCoV-19/England/CAMB-73BDA/2020
 A187G C241T G1944A C3037T C14408T A23403G

EPI_ISL_433720
 2020-04-03 2020-04-29
 United Kingdom hCoV-19/England/CAMB-78346/2020
 C241T C2940T C3037T C14408T A23403G

EPI_ISL_433722
 2020-04-03 2020-04-29
 United Kingdom hCoV-19/England/CAMB-78364/2020
 A2480G C2558T G4185A G11083T C14805T G25906T G26144T C29013T

EPI_ISL_433724
 2020-04-03 2020-04-29
 United Kingdom hCoV-19/England/CAMB-78382/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_433748
 2020-04-03 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7856E/2020
 A2480G C2558T G7393T G11083T C14805T C21639T G26144T

EPI_ISL_434063 MT632832
 2020-04-03 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S303/2020
 C241T C1059T C3037T G7560A C14408T G19999T G21452T A23403G G25563T

EPI_ISL_434074 MT632932
 2020-04-03 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S314/2020
 C241T C1059T C3037T C14408T A23403G G25563T G28881T

EPI_ISL_434088 MT632872
 2020-04-03 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S328/2020
 G529A G1401A C8782T T13438C C17747T A17858G C18060T T28144C

EPI_ISL_434096 MT632797
 2020-04-03 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S336/2020
 A6693G C8782T C14877T C17747T A17858G C18060T T28144C C28519T A29019G A29188T

EPI_ISL_434233
 2020-04-03 2020-04-29
 United States hCoV-19/USA/WA-S473/2020
 C8782T C17747T A17858G C18060T G27870T T28144C

EPI_ISL_434236 MT632985
 2020-04-03 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S476/2020
 C8782T C17747T A17858G C18060T C25886T T28144C

EPI_ISL_434658
 2020-04-03 2020-04-30
 Sweden hCoV-19/Sweden/20-06883/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T G27626A T29161C

EPI_ISL_435023
 2020-04-03 2020-05-01
 United States hCoV-19/USA/TX-HMH440/2020
 C241T C1059T C3037T G9479T C14408T A18082G A23403G G25563T C27964T

EPI_ISL_435024
 2020-04-03 2020-05-01
 United States hCoV-19/USA/TX-HMH441/2020
 C8782T A15246G C17747T A17858G C18060T T28144C

EPI_ISL_435028
 2020-04-03 2020-05-01
 United States hCoV-19/USA/TX-HMH449/2020
 C241T C3037T A6616G G14118T C14408T G15243T A23403G

EPI_ISL_435029
 2020-04-03 2020-05-01
 United States hCoV-19/USA/TX-HMH450/2020
 T490A C3177T C6040T C8782T C8950T G12478A T18736C C24034T C25413T T26729C G28077C T28144C C28896G C29451T A29700G

EPI_ISL_435030
 2020-04-03 2020-05-01
 United States hCoV-19/USA/TX-HMH451/2020
 C241T C1059T C3037T C11750T C14408T A23403G G25563T

EPI_ISL_435031
 2020-04-03 2020-05-01
 United States hCoV-19/USA/TX-HMH452/2020
 C241T C1059T C3037T C14408T A23403G G25563T G29688T

EPI_ISL_435461
 2020-04-03 2020-05-05
 United States hCoV-19/USA/LA-SR0158/2020
 C241T C1059T C3037T C12462T C14408T A23403G C24034T G25563T C25703T C27964T

EPI_ISL_435468
 2020-04-03 2020-05-05
 United States hCoV-19/USA/LA-SR0166/2020
 C241T C1059T C3037T C3738T C10319T C14408T A23403G G25563T C27964T G29543T

EPI_ISL_435469
 2020-04-03 2020-05-05
 United States hCoV-19/USA/LA-SR0167/2020
 C241T C1059T C3037T C10319T C14408T G22424T A23403G G25563T C27964T

EPI_ISL_435471
 2020-04-03 2020-05-05
 United States hCoV-19/USA/LA-SR0170/2020
 C241T C1059T C3037T T7562C C14408T C19032T T19527C A23403G G25563T C27964T C28099T

EPI_ISL_436572 MT706386
 2020-04-03 2020-05-06
 United States SARS-CoV-2/human/USA/WI-UW-278/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A4838G C7420T C14937T C20148T G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_436573 MT706387
 2020-04-03 2020-05-06
 United States SARS-CoV-2/human/USA/WI-UW-279/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A4838G C7420T C14937T C20148T G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_436956 MT446356
 2020-04-03 2020-05-07
 United States SARS-CoV-2/human/USA/LA-BIE-088/2020
 C241T C1059T C3037T C10319T C14408T A23403G G25563T C27964T

EPI_ISL_437202
 2020-04-03 2020-05-08
 Austria hCoV-19/Austria/Graz-MUG6/2020
 C241T C14408T G15957T C18877T A23403G G24197T G25563T C26735T

EPI_ISL_437287
 2020-04-03 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0095/2020
 C241T C3037T C14408T A23403G

EPI_ISL_437288
 2020-04-03 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0096/2020
 C241T C1059T C3037T G11083T C14408T A23403G G25563T

EPI_ISL_437541
 2020-04-03 2020-05-11
 United States hCoV-19/USA/LA-SR0215/2020
 C241T C1059T C3037T C10188T C14408T G18255T A23403G T24982C G25563T G26116T C27964T

EPI_ISL_437542
 2020-04-03 2020-05-11
 United States hCoV-19/USA/LA-SR0214/2020
 C241T C1059T C3037T C10319T C14408T C23202T A23403G G25563T C27964T

EPI_ISL_437656
 2020-04-03 2020-05-11
 Denmark hCoV-19/Denmark/ALAB-SSI-1498/2020
 C241T C1059T C1191T C3037T C14408T G20679T A23403G G25563T

EPI_ISL_437833 MT461634
 2020-04-03 2020-05-11
 United States SARS-CoV-2/human/USA/ID-UW-6457/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- CC36YH C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T

EPI_ISL_437840 MT461640
 2020-04-03 2020-05-11
 United States SARS-CoV-2/human/USA/WA-UW-6480/2020
 AT1- C36T C241T C1059T C3037T C12880T C14408T A23403G G25563T G29553A TG29867AA C29870A -29904AAAAAAAAAAAAAAAAAA

EPI_ISL_437841 MT461641
 2020-04-03 2020-05-11
 United States SARS-CoV-2/human/USA/WA-UW-6481/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C1059T C3037T C4158T A5011C G14126A C14408T A23403G G25563T

EPI_ISL_437848 MT461646
 2020-04-03 2020-05-11
 United States SARS-CoV-2/human/USA/WA-UW-6491/2020
 AT1- A4H AAC34TTT C241T C1059T C3037T C12880T C14408T A23403G G25563T T25724C G29553A G29864A TG29867AA C29870A -29904AAAAAAAAAAAAAAAAAA

EPI_ISL_437850 MT461647
 2020-04-03 2020-05-11
 United States SARS-CoV-2/human/USA/WA-UW-6497/2020
 ATTAAAGGTTTATACCTTCCCAG1- C36T C241T C1059T C3037T C12880T C14408T A23403G G25563T G29553A G29868V C29870A

EPI_ISL_437851 MT461648
 2020-04-03 2020-05-11
 United States SARS-CoV-2/human/USA/WA-UW-6501/2020
 A4- A31T C36T C241T C1059T C3037T C12880T C14408T A23403G G25563T G29553A TG29867AA C29870A -29904AAAAAAAAAAAAAAAAAA

EPI_ISL_437871 MT461667
 2020-04-03 2020-05-11
 United States SARS-CoV-2/human/USA/CT-UW-6574/2020
 ATTAAAG1- AAC34TTT C241T C1059T C1917T C3037T C14262T C14408T A23403G G25563T A29903-

EPI_ISL_437938
 2020-04-03 2020-05-12
 Austria hCoV-19/Austria/CeMM0058/2020
 C241T C1059T C3037T C14408T G15380T G18255T T22521K A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_438829
 2020-04-03 2020-05-12
 United Kingdom hCoV-19/Scotland/CVR1499/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C8782T T18736C G19684T C24034T T26729C C26781T C27635T G28077C T28144C A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_438830
 2020-04-03 2020-05-12
 United Kingdom hCoV-19/Scotland/CVR1504/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_438831
 2020-04-03 2020-05-12
 United Kingdom hCoV-19/Scotland/CVR1506/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_439671
 2020-04-03 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB829/2020
 C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_441005
 2020-04-03 2020-05-12
 United Kingdom hCoV-19/England/LOND-D38E0/2020
 C241T C3037T C14408T A23403G A26530G

EPI_ISL_441006
 2020-04-03 2020-05-12
 United Kingdom hCoV-19/England/LOND-D38FF/2020
 A1515G C9223T G11083T G13379A C14805T T17247C G26144T

EPI_ISL_441007
 2020-04-03 2020-05-12
 United Kingdom hCoV-19/England/LOND-D390B/2020
 C241T C3037T C14408T C18788T T19839C A23403G GGG28881AAC G29227T

EPI_ISL_441008
 2020-04-03 2020-05-12
 United Kingdom hCoV-19/England/LOND-D391A/2020
 C241T C3037T T13668C C14408T C19488T A23403G GGG28881AAC

EPI_ISL_441009
 2020-04-03 2020-05-12
 United Kingdom hCoV-19/England/LOND-D3929/2020
 C241T C3037T A9737G C14408T A23403G C24138T G25429T C28737T

EPI_ISL_441010
 2020-04-03 2020-05-12
 United Kingdom hCoV-19/England/LOND-D3938/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_441011
 2020-04-03 2020-05-12
 United Kingdom hCoV-19/England/LOND-D3947/2020
 C241T C3037T C14408T A23403G A26530G

EPI_ISL_441012
 2020-04-03 2020-05-12
 United Kingdom hCoV-19/England/LOND-D3956/2020
 C241T C313T C3037T G10105T C14408T A23403G C25904T GGG28881AAC

EPI_ISL_441013
 2020-04-03 2020-05-12
 United Kingdom hCoV-19/England/LOND-D3965/2020
 C241T C1204T C3037T C14408T C16289T A23403G G25429T

EPI_ISL_441014
 2020-04-03 2020-05-12
 United Kingdom hCoV-19/England/LOND-D3974/2020
 C241T C913T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_441015
 2020-04-03 2020-05-12
 United Kingdom hCoV-19/England/LOND-D3983/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_441111
 2020-04-03 2020-05-12
 United Kingdom hCoV-19/England/CAMB-78B02/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C14408T A23403G T25202K G26589C C27128T GGG28881AAC AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_441255
 2020-04-03 2020-05-12
 United Kingdom hCoV-19/England/CAMB-7A7A2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C14408T A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_442283
 2020-04-03 2020-05-12
 United Kingdom hCoV-19/England/CAMB-7B783/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C14408T C14786T G20578T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_443261
 2020-04-03 2020-05-12
 France hCoV-19/France/BFC5011/2020
 C241T C1593T C3037T C9438T C14408T C15324T A19182G A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_443265
 2020-04-03 2020-05-12
 France hCoV-19/France/B5310/2020
 C241T C3037T C14408T C15324T C18904T A23403G G25606T C27893T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_443281
 2020-04-03 2020-05-12
 France hCoV-19/France/B5456/2020
 C241T C690T C1059T C2842T C3037T T13006C C14408T A23403G G25563T C25688T G27990A G28378T AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_443287
 2020-04-03 2020-05-12
 France hCoV-19/France/IDF5662/2020
 C241T C2416T C3037T G8371T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAA29882-

EPI_ISL_443288
 2020-04-03 2020-05-12
 France hCoV-19/France/IDF5666/2020
 AC27-T G61T C241T C3037T C14408T C15324T A22404T A23403G G29474T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_443292
 2020-04-03 2020-05-12
 France hCoV-19/France/B5687/2020
 C241T C2416T C3037T G8371T C14408T G18859T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_443293
 2020-04-03 2020-05-12
 France hCoV-19/France/B5688/2020
 C241T C3037T G10396T C14408T C15324T A23403G C27493T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_444613
 2020-04-03 2020-05-14
 United States hCoV-19/USA/NY-NYUMC496/2020
 C8078T G10754A G11083T C14805T T17247C G20326A G26144T

EPI_ISL_444615
 2020-04-03 2020-05-14
 United States hCoV-19/USA/NY-NYUMC498/2020
 C241T C1059T C2485T C3037T C9724T C14408T A23403G G25563T

EPI_ISL_444707
 2020-04-03 2020-05-14
 United States hCoV-19/USA/NY-NYUMC590/2020
 C241T C1059T C1218T G1466T C3037T G11083T C14408T A23403G G25563T

EPI_ISL_444714
 2020-04-03 2020-05-14
 United States hCoV-19/USA/NY-NYUMC597/2020
 C241T C619T C1059T C3037T C11074T C14408T A14912G A23403G G25563T

EPI_ISL_444715
 2020-04-03 2020-05-14
 United States hCoV-19/USA/NY-NYUMC598/2020
 C241T C1059T C3037T C14408T C22530T A23403G G25563T

EPI_ISL_444716
 2020-04-03 2020-05-14
 United States hCoV-19/USA/NY-NYUMC599/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_444717
 2020-04-03 2020-05-14
 United States hCoV-19/USA/NY-NYUMC600/2020
 C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_444718
 2020-04-03 2020-05-14
 United States hCoV-19/USA/NY-NYUMC601/2020
 C241T C3037T C14408T A23403G A25505C GGG28881AAC G29449T

EPI_ISL_444719
 2020-04-03 2020-05-14
 United States hCoV-19/USA/NY-NYUMC602/2020
 C241T C1059T C3037T C4246T C14408T A23403G G25563T

EPI_ISL_444722
 2020-04-03 2020-05-14
 United States hCoV-19/USA/NY-NYUMC605/2020
 C241T C1059T C3037T C14408T A23403G G25563T C29013T

EPI_ISL_444723
 2020-04-03 2020-05-14
 United States hCoV-19/USA/NY-NYUMC606/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_444757
 2020-04-03 2020-05-14
 United States hCoV-19/USA/NY-NYUMC640/2020
 C241T C1059T C3037T C3698T C11916T C14408T A23403G G25563T

EPI_ISL_444758
 2020-04-03 2020-05-14
 United States hCoV-19/USA/NY-NYUMC641/2020
 C241T C1059T G1397A C3037T A3559G C11916T C14408T C18998T A23403G T23480G G25563T G29540A

EPI_ISL_444759
 2020-04-03 2020-05-14
 United States hCoV-19/USA/NY-NYUMC642/2020
 C241T C1059T C3037T G9190A C11416A C11916T C14408T A23403G G25563T

EPI_ISL_444760
 2020-04-03 2020-05-14
 United States hCoV-19/USA/NY-NYUMC643/2020
 C241T C2003T C3037T C5730T C14408T G21606T A23403G GG28882AC G29868A

EPI_ISL_444763
 2020-04-03 2020-05-14
 United States hCoV-19/USA/NY-NYUMC646/2020
 C241T C1059T C2488T C3037T C14408T A23403G G25563T A28052G G28221T

EPI_ISL_444766
 2020-04-03 2020-05-14
 United States hCoV-19/USA/NY-NYUMC649/2020
 C241T C1059T C3037T C14408T G18984T A23403G G25563T C28728T

EPI_ISL_444849
 2020-04-03 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-1378/2020
 ATG1605- G21724T C28253A

EPI_ISL_444850
 2020-04-03 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-1382/2020
 C241T C1059T C1302T C3037T C14408T C19152T A23403G G25563T

EPI_ISL_444852
 2020-04-03 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-1386/2020
 C241T C1059T C3037T T8788C C14408T A23403G G25563T G26951A

EPI_ISL_444853
 2020-04-03 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-1387/2020
 C241T C1059T C3037T T8788C C14408T G19656T A23403G G25563T G26951A

EPI_ISL_444854
 2020-04-03 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-1388/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_444855
 2020-04-03 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-1390/2020
 C241T AAGTCATTT686- C1059T C1722T C3037T T8788C C14408T G19009T A23403G G25563T G26951A

EPI_ISL_445373
 2020-04-03 2020-05-15
 Chile hCoV-19/Chile/Santiago_76/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T A7611R C14408T C18483T A23403G G25690K T27299C GGG28881AAC T29148C ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_445406
 2020-04-03 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-28B4D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G GGG28881AAC G29395C

EPI_ISL_447064 MT506570
 2020-04-03 2020-05-16
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20266/2020
 C241T C1059T C3037T C4582T A5011M C6606T C14408T G18214R A23403G G25563T ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_447088 MT506573
 2020-04-03 2020-05-16
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20291/2020
 C241T G960R C1059T C3037T C4202T C11941T C14408T A23403G G25563T

EPI_ISL_447104 MT506572
 2020-04-03 2020-05-16
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20307/2020
 C241T C1059T C3037T C4582T A5011M C6606T C14408T A23403G G25563T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_447426
 2020-04-03 2020-05-17
 Israel hCoV-19/Israel/13077726/2020
 C241T C1059T C3037T C14408T A20755C A23403G G25563T C25889T C26078T AACGAACATG27387- AAAAAAAAAAAA29892-

EPI_ISL_447432
 2020-04-03 2020-05-17
 Israel hCoV-19/Israel/13077558/2020
 C241T C2416T C3037T C14408T A23403G G25563T G25855T AAAAAAAAAAAA29892-

EPI_ISL_447435
 2020-04-03 2020-05-17
 Israel hCoV-19/Israel/13077498/2020
 C241T C1059T C3037T C9893T C14408T A20755C A23403G G25563T AAAAAAAAAAAA29892-

EPI_ISL_447438
 2020-04-03 2020-05-17
 Israel hCoV-19/Israel/13077413/2020
 C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A AAAAAAAAAAAA29892-

EPI_ISL_447786
 2020-04-03 2020-05-18
 Colombia hCoV-19/Colombia/GVI-93534/2020
 ATTAAAGGTTTATAC1- C241T C1059T C3037T C14408T A23403G G25563T GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_447789
 2020-04-03 2020-05-18
 Colombia hCoV-19/Colombia/GVI-93537/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C3037T T12094C C14408T T19839C T23255C A23403G GGG28881AAC C28937T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_447790
 2020-04-03 2020-05-18
 Colombia hCoV-19/Colombia/GVI-93538/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C1059T C3037T G3323T C14408T A23403G T24238G G25563T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_447791
 2020-04-03 2020-05-18
 Colombia hCoV-19/Colombia/GVI-97161/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C1059T C3037T C14408T A23403G G25563T GTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29759-

EPI_ISL_447792
 2020-04-03 2020-05-18
 Colombia hCoV-19/Colombia/GVI-97181/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCT1- C241T A2761T C3037T C11753T C14408T C18877T C21998A A23403G G25563T C26028T AAA29901-

EPI_ISL_447793
 2020-04-03 2020-05-18
 Colombia hCoV-19/Colombia/GVI-97203/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T C1059T C3037T C14408T A23403G G25563T AATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29770-

EPI_ISL_447794
 2020-04-03 2020-05-18
 Colombia hCoV-19/Colombia/GVI-97210/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C3037T G13240A C14408T A23403G G25297A GGG28881AAC AGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29776-

EPI_ISL_447893 MT481933
 2020-04-03 2020-05-18
 United States SARS-CoV-2/human/USA/CA-CZB-1142/2020
 ATTAAAGGTT1- C241T C1059T C3037T C9561T C14408T C17410A A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_450400
 2020-04-03 2020-05-21
 United States hCoV-19/USA/NY-NYUMC683/2020
 C241T C3037T C14408T C18877T A23403G G25563T G28881A GC28968CT

EPI_ISL_450804 MT507280
 2020-04-03 2020-05-22
 United States SARS-CoV-2/human/USA/VI-CDC-3810/2020
 C241T C3037T G11083T C14408T T15264C A23403G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_451168
 2020-04-03 2020-05-23
 Belgium hCoV-19/Belgium/UGent-57/2020
 C241T C3037T C14408T C15324T C20405A A23403G C25433T ATC27038TAA

EPI_ISL_451974 MT511069
 2020-04-03 2020-05-26
 Poland SARS-CoV-2/human/POL/PL_P13/2020
 C241T C541T A544G C3037T G4180T T7767C C11704T C14408T G19254T A23403G

EPI_ISL_451977 MT511072
 2020-04-03 2020-05-26
 Poland SARS-CoV-2/human/POL/PL_P16/2020
 C241T C3037T C7081T C13072T C14408T C19836T A23403G C29870M

EPI_ISL_452140
 2020-04-03 2020-05-26
 Belgium hCoV-19/Belgium/20A42/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_452190
 2020-04-03 2020-05-27
 Italy hCoV-19/Italy/VR_20COV46-8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C48A A187G C241T C3037T C14408T C14889T A23403G C25658T A26166T TGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29785-

EPI_ISL_452191
 2020-04-03 2020-05-27
 Italy hCoV-19/Italy/VR_20COV46-23/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- A187G C241T C3037T C14408T C14576T C14889T A23403G C25658T A26166T TGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29785-

EPI_ISL_452797 MT558648
 2020-04-03 2020-05-27
 United States SARS-CoV-2/human/USA/VA-DCLS-0219/2020
 ATT1- C241T C2416T C3037T C14408T A23403G G25563T G26233T

EPI_ISL_452798 MT558649
 2020-04-03 2020-05-27
 United States SARS-CoV-2/human/USA/VA-DCLS-0220/2020
 ATTAAAGG1- C241T C3037T T9172C A10948G C14408T G15380T A23403G G26730T C28432T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_452799 MT558650
 2020-04-03 2020-05-27
 United States SARS-CoV-2/human/USA/VA-DCLS-0221/2020
 ATTAAAGGTTTA1- C241T C3037T T9172C A10948G C14408T A23403G G26730T GGG28881AAC

EPI_ISL_452800 MT558651
 2020-04-03 2020-05-27
 United States SARS-CoV-2/human/USA/VA-DCLS-0223/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T C11747T C14408T C18877T A23403G G25459T G25555T G25563T G28086T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_452801 MT558652
 2020-04-03 2020-05-27
 United States SARS-CoV-2/human/USA/VA-DCLS-0224/2020
 ATTAAAGGTTTATACCT1- C241T C3037T C14408T C18877T A23403G G25459T G25555T G25563T G28086T A29869G

EPI_ISL_452802 MT558653
 2020-04-03 2020-05-27
 United States SARS-CoV-2/human/USA/VA-DCLS-0225/2020
 ATTAAAGG1- C241T C1059T C1917T C3037T C14408T A23403G G25563T

EPI_ISL_452803 MT558654
 2020-04-03 2020-05-27
 United States SARS-CoV-2/human/USA/VA-DCLS-0226/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T G16158T C18877T A23403G G25459T G25555T G25563T G28086T G29868A C29870A

EPI_ISL_452804 MT558655
 2020-04-03 2020-05-27
 United States SARS-CoV-2/human/USA/VA-DCLS-0227/2020
 ATT1- C241T C1059T C3037T C14408T A18015G A23403G G25563T

EPI_ISL_453967
 2020-04-03 2020-05-28
 Portugal hCoV-19/Portugal/PT0253/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C4832T C14408T A23403G GGG28881AAC C29205T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_453969
 2020-04-03 2020-05-28
 Portugal hCoV-19/Portugal/PT0255/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3140T G11417T C14408T A23403G G24077T T28705C C29555T GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_453970
 2020-04-03 2020-05-28
 Portugal hCoV-19/Portugal/PT0256/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_453972
 2020-04-03 2020-05-28
 Portugal hCoV-19/Portugal/PT0258/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_453975
 2020-04-03 2020-05-28
 Portugal hCoV-19/Portugal/PT0261/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T C14408T A23403G G23856T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_453976
 2020-04-03 2020-05-28
 Portugal hCoV-19/Portugal/PT0262/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G G23856T GGG28881AAC GTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29688-

EPI_ISL_454317
 2020-04-03 2020-05-28
 Portugal hCoV-19/Portugal/PT0594/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T T721C C3037T C4784T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454778
 2020-04-03 2020-05-29
 Netherlands hCoV-19/Netherlands/Utrecht_10029/2020
 ATTAAA1- C241T C1594T C3037T C11109T C14408T A23403G G25563T AAAAAA29898-

EPI_ISL_455120
 2020-04-03 2020-05-29
 Netherlands hCoV-19/Netherlands/Friesland_17/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T9477A C10755T C14805T G25979T T28144C C28657T C28863T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455132
 2020-04-03 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_327/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18788T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455133
 2020-04-03 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_328/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T19839C A23403G GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455134
 2020-04-03 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_329/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455198
 2020-04-03 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_396/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2113T C3037T C4456T C7765T C14408T C17690T C18877T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455199
 2020-04-03 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_397/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2113T C3037T C7765T C14408T C17690T C18877T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455200
 2020-04-03 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_398/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2113T C3037T C7765T C12786T C14408T C17690T C18877T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455227
 2020-04-03 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_425/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C19170T G19509A A23403G C26313T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455251
 2020-04-03 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_449/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C478T C3037T G12550A C14408T G15982T A20268G C20740A A23403G G29734C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455266
 2020-04-03 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_464/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2113T C3037T C7765T C14408T C17690T C18877T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455617 MT536184
 2020-04-03 2020-05-29
 United States SARS-CoV-2/human/USA/LA-BIE-063/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATC1- C241T C1059T C3037T C8730T C14408T G19542T A23403G G25563T C27964T G29781T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_455645
 2020-04-03 2020-06-01
 India hCoV-19/India/S15/2020
 C7945T C8782T G22468T T28144C G28878A G29742A

EPI_ISL_455646
 2020-04-03 2020-06-01
 India hCoV-19/India/S16/2020
 C241T C3037T C14408T T15132C A23403G G28221T C28383T

EPI_ISL_455976
 2020-04-03 2020-06-01
 Belgium hCoV-19/Belgium/ULG-10188/2020
 C241T C3037T G4255T T13830C C14408T C16192T G18756T A23403G A26530G C29635T

EPI_ISL_456079
 2020-04-03 2020-06-01
 Brazil hCoV-19/Brazil/RJ-1402/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C20436T A23403G T27299C GGG28881AAC T29148C CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_456083
 2020-04-03 2020-06-01
 Brazil hCoV-19/Brazil/RJ-1627/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18570T G21608T A23403G T27299C G28347A GGG28881AAC T29148C CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_456309
 2020-04-03 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1924/2020
 C241T C3037T C6723T C14408T A23403G T26094C

EPI_ISL_456314
 2020-04-03 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1933/2020
 C241T C1059T C3037T C14408T C16260T C17352T A23403G G25563T C28821A

EPI_ISL_457018
 2020-04-03 2020-06-02
 United Kingdom hCoV-19/Scotland/EDB805/2020
 C241T C3037T C14408T A23403G C25433T

EPI_ISL_457019
 2020-04-03 2020-06-02
 United Kingdom hCoV-19/Scotland/EDB808/2020
 C241T C3037T C14408T A23403G C25433T C27903T

EPI_ISL_457020
 2020-04-03 2020-06-02
 United Kingdom hCoV-19/Scotland/EDB816/2020
 C241T C3037T C14408T A23403G C25433T

EPI_ISL_457054
 2020-04-03 2020-06-02
 United Kingdom hCoV-19/England/EXET-1353DB/2020
 C241T C3037T C6903T A13456G C14408T A23403G GGG28881AAC

EPI_ISL_457166
 2020-04-03 2020-06-02
 United Kingdom hCoV-19/England/EXET-135DBF/2020
 G1440A G2891A C4668T T5521C C7815T A11144C

EPI_ISL_457868
 2020-04-03 2020-06-02
 Kenya hCoV-19/Kenya/P169/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G17523T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_457981
 2020-04-03 2020-06-02
 Oman hCoV-19/Oman/205026358/2020
 ATTAAAGGTTTATACCTTCCCAGG1- T25G C241T C3037T C8832T G10265A C14408T C16293T C19269T A23403G GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_458069
 2020-04-03 2020-06-03
 India hCoV-19/India/CCMB_O4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- G1820A C6310A C6312A G11083T C13730T C19524T C23929T C28311T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_458080
 2020-04-03 2020-06-03
 India hCoV-19/India/CCMB_J300/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_458084
 2020-04-03 2020-06-03
 Italy hCoV-19/ITALY/SardiniaNuoro04039046/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T A13703G C14408T A23403G C27046T GGG28881AAC TTCTTAGGAGAATGA29855- A29891G A29902C

EPI_ISL_458138
 2020-04-03 2020-06-03
 Brazil hCoV-19/Brazil/AP162741-IEC/2020
 C241T C3037T C10778T C14408T A23403G C23683T T27299C GGG28881AAC T29148C

EPI_ISL_458240
 2020-04-03 2020-06-04
 United States hCoV-19/USA/CA-SR0355/2020
 C241T C3037T C14408T C18877T A23403G G25563T

EPI_ISL_458261
 2020-04-03 2020-06-04
 United States hCoV-19/USA/CA-SR0381/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_460135 MT520210
 2020-04-03 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00661/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C2416T C3037T C14408T A23403G G25563T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_460217 MT520292
 2020-04-03 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00659/2020
 ATTAAAGGTTTATACC1- C241T C2416T C3037T T10216C C14408T A23403G G25563T G26233T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_460248 MT520323
 2020-04-03 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00660/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C2416T C3037T C14408T A23403G G25563T G26233T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460256 MT520331
 2020-04-03 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00657/2020
 ATTAAAGGTTTAT1- C241T C1059T C3037T C5886T C14408T A23403G G25563T T29036G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_460327 MT520402
 2020-04-03 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00639/2020
 ATTAAA1- G105T C241T C3037T C10582T A11537G C14408T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_460377 MT520452
 2020-04-03 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00663/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T C3037T T13006C C14408T A23403G G25563T C25688T T26102C AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_460402 MT520477
 2020-04-03 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00658/2020
 ATTAAAGGT1- C241T C1059T C3037T C10335T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_460412 MT520487
 2020-04-03 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00637/2020
 ATTAAA1- C241T C2416T C3037T C14408T A23403G C24023T C24921T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_460651
 2020-04-03 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_15/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C11109T C12073T C14408T C16049T A23403G G25563T A27440C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460652
 2020-04-03 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_16/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1537C C3037T T13006C C14408T C17474T A23403G G25563T C25688T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460705
 2020-04-03 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_532/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C478T C3037T G12550A C14408T G15982T A20268G C20740A A23403G G29734C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460941
 2020-04-03 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_41/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9438T G12550A C14408T A20268G C20740A A23403G G26501T G27598C TT27760AC C29095T G29690T G29734C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461129
 2020-04-03 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_694/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T T17247C C25276T G26144T G29690T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461265
 2020-04-03 2020-06-06
 Netherlands hCoV-19/Netherlands/Zeeland_27/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1415T C3037T C14408T A23403G G23624T A24862G A27674T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461339
 2020-04-03 2020-06-06
 Netherlands hCoV-19/Netherlands/ZuidHolland_167/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T10561C C14408T C15324T C16394T A20531C A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461412 MT683388
 2020-04-03 2020-06-06
 United States SARS-CoV-2/human/USA/CT-UW-6587/2020
 ATTA1- AAC34TTT C241T C3037T C14408T C18877T A22503T A23403G G25563T C26313T AAAAAAAAAAAAAAAAAAAAAA29882-

EPI_ISL_461414 MT683389
 2020-04-03 2020-06-06
 United States SARS-CoV-2/human/USA/CT-UW-6590/2020
 ATTAAAGGTTTATACCTTCCCA1- AACC34TTTH C241T C1059T C3037T C14408T C20402T A23403G G25563T A27994G AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_461416 MT683390
 2020-04-03 2020-06-06
 United States SARS-CoV-2/human/USA/CT-UW-6592/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAA1- C241T C1059T C3037T C14408T A23403G G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_461420 MT683392
 2020-04-03 2020-06-06
 United States SARS-CoV-2/human/USA/CT-UW-6603/2020
 ATTAAAG1- AAC34TTT C241T C1059T C3037T C11916T C14408T C18998T G19872A A23403G G25563T G29540A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_461762
 2020-04-03 2020-06-06
 United Kingdom hCoV-19/Scotland/EDB817/2020
 C241T C3037T C14408T G19891T A23403G C25433T

EPI_ISL_462235
 2020-04-03 2020-06-08
 Belgium hCoV-19/Belgium/DEJ-0403381/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462236
 2020-04-03 2020-06-08
 Belgium hCoV-19/Belgium/LA-0403382/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T C23191T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462355
 2020-04-03 2020-06-08
 Singapore hCoV-19/Singapore/237/2020
 C6310A C6312A G11083T C13730T C19524T T21442C C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_463284 MT585089
 2020-04-03 2020-06-10
 United States SARS-CoV-2/human/USA/LA-BIE-036/2020
 C241T C1059T C3037T C14408T C22998T A23403G G25563T C27964T G28899A

EPI_ISL_463288 MT585093
 2020-04-03 2020-06-10
 United States SARS-CoV-2/human/USA/LA-BIE-040/2020
 C241T C1059T C3037T C6070T C10319T C14408T A23403G G25563T G25599T C27964T

EPI_ISL_463297 MT585102
 2020-04-03 2020-06-10
 United States SARS-CoV-2/human/USA/LA-BIE-049/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T

EPI_ISL_463929
 2020-04-03 2020-06-11
 Canada hCoV-19/Canada/QC_AQ5/2020
 C241T C3037T C14408T C15324T A23403G C25433T

EPI_ISL_463942
 2020-04-03 2020-06-11
 Canada hCoV-19/Canada/QC_AT7/2020
 C241T C1059T C1150T C1223T C3037T C4886T C14408T G14829T A23403G A24782G G25563T G27561T C27964T

EPI_ISL_463946
 2020-04-03 2020-06-11
 Canada hCoV-19/Canada/QC_AU7/2020
 C241T C3037T C14408T C15324T A23403G C25433T

EPI_ISL_464018
 2020-04-03 2020-06-11
 Canada hCoV-19/Canada/ON-UHTC_0038/2020
 C241T C1059T C3037T C14408T G14653T C17339T A23403G G25563T G28368A

EPI_ISL_464024
 2020-04-03 2020-06-11
 Canada hCoV-19/Canada/ON-UHTC_0058/2020
 C241T C1059T C3037T C14408T A23403G G25563T G28302C G28368A

EPI_ISL_464028
 2020-04-03 2020-06-11
 Canada hCoV-19/Canada/ON-UHTC_0037/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_464037
 2020-04-03 2020-06-11
 Canada hCoV-19/Canada/ON-UHTC_0041/2020
 C241T C1059T C1943T C3037T G11083T C14408T A23403G G25563T G28368A

EPI_ISL_464063
 2020-04-03 2020-06-11
 Canada hCoV-19/Canada/ON-UHTC_0051/2020
 C241T C1059T C3037T C14408T A23403G G25563T C29769T

EPI_ISL_464084
 2020-04-03 2020-06-11
 Belgium hCoV-19/Belgium/rega-0403290/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G24794T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_464145
 2020-04-03 2020-06-11
 South Africa hCoV-19/SouthAfrica/Tygerberg_34/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G GGG28881AAC CTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29784-

EPI_ISL_464146
 2020-04-03 2020-06-11
 South Africa hCoV-19/SouthAfrica/Tygerberg_35/2020
 C241T T8022G C14408T A23403G AG24389CC GGG28881AAC

EPI_ISL_464147
 2020-04-03 2020-06-11
 South Africa hCoV-19/SouthAfrica/Tygerberg_36/2020
 C241T C14408T T20891G A23403G GGG28881AAC

EPI_ISL_465499
 2020-04-03 2020-06-11
 United Kingdom hCoV-19/England/20188020404/2020
 C241T C3037T A5855G C14408T C18110T C18115T A23403G GGG28881AAC

EPI_ISL_466076
 2020-04-03 2020-06-11
 United Kingdom hCoV-19/England/20148067204/2020
 C241T C3037T C14408T C18568T A23403G G24348T G25912T GGG28881AAC

EPI_ISL_466089
 2020-04-03 2020-06-11
 United Kingdom hCoV-19/England/20149003004/2020
 C241T C1101T C3037T C3373A C11195T C14408T C15216T A23403G G25203T GGG28881AAC

EPI_ISL_466090
 2020-04-03 2020-06-11
 United Kingdom hCoV-19/England/20149003104/2020
 C241T C1101T C3037T C3373A C11195T C14408T C15216T A23403G GG25203TS GGG28881AAC

EPI_ISL_466092
 2020-04-03 2020-06-11
 United Kingdom hCoV-19/England/20149003304/2020
 C583T A700G A2480G C2558T C7279T G11083T C14805T A15405G G26144T C27331T

EPI_ISL_466103
 2020-04-03 2020-06-11
 United Kingdom hCoV-19/England/20149004804/2020
 C241T C3037T C8025T C14408T A20268G A23403G G29734C

EPI_ISL_466152
 2020-04-03 2020-06-11
 United Kingdom hCoV-19/England/20149012004/2020
 C241T C3037T C14408T A20268G A23403G

EPI_ISL_466156
 2020-04-03 2020-06-11
 United Kingdom hCoV-19/England/20149013504/2020
 C241T C3037T C14408T C23086T A23403G A27237G GGG28881AAC GA29868SW

EPI_ISL_466157
 2020-04-03 2020-06-11
 United Kingdom hCoV-19/England/20149013604/2020
 C241T C3037T C14408T C23086T A23403G A27237G GGG28881AAC

EPI_ISL_466158
 2020-04-03 2020-06-11
 United Kingdom hCoV-19/England/20149013704/2020
 C241T C3037T C14408T C23086T A23403G A27237G GGG28881AAC

EPI_ISL_466162
 2020-04-03 2020-06-11
 United Kingdom hCoV-19/England/20149021404/2020
 A2480G C2558T C7011T G11405A C14805T C19895T AC22285MY G26144T C28869T G29779T

EPI_ISL_466163
 2020-04-03 2020-06-11
 United Kingdom hCoV-19/England/20149021704/2020
 A2480G C2558T C5526T G6961K C7011T T9028W G11083T G11405A C14805T C19895T G26144T C26527S C28869T G29779T

EPI_ISL_466166
 2020-04-03 2020-06-11
 United Kingdom hCoV-19/England/20149022204/2020
 A2480G C2558T C7011T G11405A G14512T C14805T C19895T G26144T T27484C C28869T G29779T

EPI_ISL_466169
 2020-04-03 2020-06-11
 United Kingdom hCoV-19/England/20149022504/2020
 A2480G C2558T C7011T G11083T G11405A C14805T C19895T G26144T C28869T G29779T

EPI_ISL_466176
 2020-04-03 2020-06-11
 United Kingdom hCoV-19/England/20149025404/2020
 A2480G C2558T C7011T G11083T G11405A C14805T C19895T G26144T C28869T G29779T

EPI_ISL_466178
 2020-04-03 2020-06-11
 United Kingdom hCoV-19/England/20149026204/2020
 C241T C313T C3037T C14408T A23403G G27382T GGG28881AAC

EPI_ISL_466180
 2020-04-03 2020-06-11
 United Kingdom hCoV-19/England/20149027404/2020
 A2480G C2558T C7011T G11083T G11405A C14805T A19338R C19895T T22389C G26144T C28869T G29779T

EPI_ISL_466186
 2020-04-03 2020-06-11
 United Kingdom hCoV-19/England/20149035304/2020
 A1515G G4510T C9223T A10912G G11083T C14805T T17247C G20931T G26144T A27241R

EPI_ISL_466199
 2020-04-03 2020-06-11
 United Kingdom hCoV-19/England/20149044504/2020
 C241T C3037T C4784Y C14408T A23403G C25149Y G25429K GTTCTA28090- GGG28881AAC

EPI_ISL_466200
 2020-04-03 2020-06-11
 United Kingdom hCoV-19/England/20149045004/2020
 C241T C1710T C3037T C5575T C14408T G19296K T19299Y A23403G GTTCTA28090- GGG28881AAC

EPI_ISL_466234
 2020-04-03 2020-06-11
 United Kingdom hCoV-19/England/20152047704/2020
 A2480G C2558T C7011T G11083T G11405A C14805T G26144T C27199Y C28869T

EPI_ISL_467194
 2020-04-03 2020-06-12
 Spain hCoV-19/Spain/COV003719/2020
 C8782T C13115T T25541C C26088T T28144C

EPI_ISL_467238
 2020-04-03 2020-06-12
 Spain hCoV-19/Spain/COV003716/2020
 C241T C1282T C3037T T4051K C14408T A20268G A22924G A23403G C27476Y C27661Y

EPI_ISL_467241
 2020-04-03 2020-06-12
 Spain hCoV-19/Spain/COV003717/2020
 C241T C3037T G13948T C14408T A20268G A23403G A24221G

EPI_ISL_467381
 2020-04-03 2020-06-13
 United States hCoV-19/USA/NY-NYUMC888/2020
 C241T C1059T C3037T A4360C C14408T A23403G G25563T

EPI_ISL_467433
 2020-04-03 2020-06-14
 South Africa hCoV-19/South Africa/KRISP-0017/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C3037T C14408T A23403G GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_467450
 2020-04-03 2020-06-14
 South Africa hCoV-19/South Africa/KRISP-0066/2020
 C241T C3037T C14408T C16376T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_467451
 2020-04-03 2020-06-14
 South Africa hCoV-19/South Africa/KRISP-0067/2020
 C241T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_467469
 2020-04-03 2020-06-14
 South Africa hCoV-19/South Africa/KRISP-0116/2020
 ATTAAAGGTTTA1- C241T C3037T C14408T C16376T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_467653
 2020-04-03 2020-06-14
 United States hCoV-19/USA/NM-UNM-00142/2020
 C241T C1059T C3037T C11095A C14408T A23403G G25563T A26267G

EPI_ISL_467654
 2020-04-03 2020-06-14
 United States hCoV-19/USA/NM-UNM-00143/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_468024
 2020-04-03 2020-06-16
 Australia hCoV-19/Australia/SAP226/2020
 C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC G28908T

EPI_ISL_468414 MT628149
 2020-04-03 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1450/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C379A C1059T C3037T C7735Y C14408T C15738Y T18648W A23403G G25012A G25563T C27625Y ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_468532 MT628255
 2020-04-03 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1603/2020
 ATTAAAGGTTTATACCT1- C4776T C8782T T13914C C17104T C17747T A17858G C18060T G28086T T28144C

EPI_ISL_468533 MT628256
 2020-04-03 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1604/2020
 A2389G C4776T C8782T C17747Y A17858G C18060T G28086K T28144C AAAAAAAAAAAAA29891-

EPI_ISL_468647 MT631837
 2020-04-03 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1721/2020
 ATTAA1- C241T C379A C1059T C3037T C14408T A20374G A23403G G25563T GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_468650 MT631840
 2020-04-03 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1727/2020
 ATT1- C241T C379A C1059T C3037T C14408T A20374G A23403G G25563T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_468712
 2020-04-03 2020-06-17
 United States hCoV-19/USA/LA-BIE-022/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATC1- C241T C1059T C3037T C10319T C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469051
 2020-04-03 2020-06-17
 Morocco hCoV-19/Morocco/Mor-CoV-3/2020
 C241T C1684T C3037T G6404T C8208T C14408T C15324T G22363T A23403G C29362T

EPI_ISL_469293
 2020-04-03 2020-06-18
 Japan hCoV-19/Japan/Donner35/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T C313T C823T C3037T C14408T G23401T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_470831
 2020-04-03 2020-06-19
 Australia hCoV-19/Australia/WA13/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C241T G675S C1059T C3037T T4341Y C5365Y A5466W C14408T C21781T A23403G G25563T C29415T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_471240
 2020-04-03 2020-06-19
 United States hCoV-19/USA/WI-WSLH-200075/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T G16381A T17877C C20316T G25500T G26211T T28144C G28878A G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471542
 2020-04-03 2020-06-22
 Brazil hCoV-19/Brazil/SP-127/2020
 T25G C241T C3037T C14408T T14501C G18898T A23403G G25088T GGG28881AAC CTT29857TCG GGA29861TCT AAAAAAAAAAAAA29891-

EPI_ISL_473779
 2020-04-03 2020-06-23
 United Kingdom hCoV-19/Scotland/CVR3839/2020
 C241T C3037T C10798A C13862T C14408T C22000T A23403G C28836T

EPI_ISL_474810
 2020-04-03 2020-06-23
 Spain hCoV-19/Spain/Albacete-COV003777/2020
 C241T C3037T T10415A C10650T C14408T A20268G A23403G C28708T

EPI_ISL_475644
 2020-04-03 2020-06-23
 United States hCoV-19/USA/CA-CSMC33/2020
 T42A C241T C1059T C1288T C3037T A3780G C14408T A23403G G25563T

EPI_ISL_475645
 2020-04-03 2020-06-23
 United States hCoV-19/USA/CA-CSMC34/2020
 C6286T C8782T A9634T C17010T C17747T A17858G C18060T C20234T T25451C T28144C C29367G

EPI_ISL_475647
 2020-04-03 2020-06-23
 United States hCoV-19/USA/CA-CSMC36/2020
 C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T

EPI_ISL_475648
 2020-04-03 2020-06-23
 United States hCoV-19/USA/CA-CSMC37/2020
 C241T C1059T C3037T C14408T G15908A A23403G G25563T

EPI_ISL_475649
 2020-04-03 2020-06-23
 United States hCoV-19/USA/CA-CSMC38/2020
 C241T A2784T C3037T T9401C T9403A T13474C C14408T TA19519- C22097T A23403G T24903C G25563T A27997T

EPI_ISL_475650
 2020-04-03 2020-06-23
 United States hCoV-19/USA/CA-CSMC39/2020
 C241T C379A C1059T C3037T C5654T C11824T C14408T C14554T A23403G G25563T

EPI_ISL_475652
 2020-04-03 2020-06-23
 United States hCoV-19/USA/CA-CSMC40/2020
 C241T C379A C1059T C3037T C14408T A23403G G25563T T28688G

EPI_ISL_475686
 2020-04-03 2020-06-23
 United States hCoV-19/USA/CA-CSMC71/2020
 T490A G922A C3177T C8782T C10207T C15738T T18736C A22003G C24034T T26729C G28077C T28144C A29700G

EPI_ISL_475690
 2020-04-03 2020-06-23
 United States hCoV-19/USA/CA-CSMC75/2020
 C241T G2035T C3037T C4777T C14408T T14658C T15264C A23403G

EPI_ISL_475691
 2020-04-03 2020-06-23
 United States hCoV-19/USA/CA-CSMC76/2020
 C241T C3037T G11083T C14408T C14786T G17572T C21233T A23403G GGG28881AAC

EPI_ISL_475800
 2020-04-03 2020-06-25
 Austria hCoV-19/Austria/CeMM0337/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3250T G11083T C14408T A23403G A24862G C28657T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475801
 2020-04-03 2020-06-25
 Austria hCoV-19/Austria/CeMM0340/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475804
 2020-04-03 2020-06-25
 Austria hCoV-19/Austria/CeMM0343/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T9477A C14805T C21304A G25979T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475805
 2020-04-03 2020-06-25
 Austria hCoV-19/Austria/CeMM0344/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T9477A C14805T C21304A G25979T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475828
 2020-04-03 2020-06-25
 Austria hCoV-19/Austria/CeMM0386/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G19677K A23403G T27384Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475895
 2020-04-03 2020-06-25
 Austria hCoV-19/Austria/CeMM0528/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A26530G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475896
 2020-04-03 2020-06-25
 Austria hCoV-19/Austria/CeMM0530/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4290M C6336T C8318A C14408T G15589R C17304Y T18892Y T19985Y A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475929
 2020-04-03 2020-06-25
 Austria hCoV-19/Austria/CeMM0620/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475935
 2020-04-03 2020-06-25
 Austria hCoV-19/Austria/CeMM0637/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2396M T2703Y C3037T C14408T C15324T A22259G A23403G T25569Y G29759T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476511
 2020-04-03 2020-06-25
 Canada hCoV-19/Canada/QC_AQ3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G C25433T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476512
 2020-04-03 2020-06-25
 Canada hCoV-19/Canada/QC_AR2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1387T C3037T C14408T A20755C C20936T A23403G G25563T C28717T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477197
 2020-04-03 2020-06-29
 Italy hCoV-19/Italy/IZSPB_3725/2020
 A1CCGACCGGA C241T C3037T A3942T A10948G C14408T A23403G G27827T GGG28881AAC A29881C A29883C AAAAA29885TGGGG AAAAAAAAAAAAA29891T

EPI_ISL_477822
 2020-04-03 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR1509/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T C15017T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478440
 2020-04-03 2020-06-30
 United Kingdom hCoV-19/England/LOND-D6E63/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2164A C3037T C14408T A23403G GGG28881AAC ATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29815-

EPI_ISL_478441
 2020-04-03 2020-06-30
 United Kingdom hCoV-19/England/LOND-D6E72/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T G26144T ATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29815-

EPI_ISL_478443
 2020-04-03 2020-06-30
 United Kingdom hCoV-19/England/LOND-D6EBE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8293T A11839G C14408T C16575T T19839C A23403G GGG28881AAC ATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29815-

EPI_ISL_478444
 2020-04-03 2020-06-30
 United Kingdom hCoV-19/England/LOND-D6F42/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G11083T C14805T G18255T C20428T C22088T G26144T ATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29815-

EPI_ISL_478445
 2020-04-03 2020-06-30
 United Kingdom hCoV-19/England/LOND-D6F60/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18395T A23403G GGG28881AAC ATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29815-

EPI_ISL_478450
 2020-04-03 2020-06-30
 United Kingdom hCoV-19/England/LOND-D6FD9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G11083T C14805T G26144T ATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29815-

EPI_ISL_478451
 2020-04-03 2020-06-30
 United Kingdom hCoV-19/England/LOND-D6FF7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T1483A A2480G C2558T G11083T C14805T G26144T C27600T ATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29815-

EPI_ISL_478452
 2020-04-03 2020-06-30
 United Kingdom hCoV-19/England/LOND-D7002/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11365T C14408T A23403G G26372T ATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29815-

EPI_ISL_478453
 2020-04-03 2020-06-30
 United Kingdom hCoV-19/England/LOND-D7011/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G ATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29815-

EPI_ISL_478454
 2020-04-03 2020-06-30
 United Kingdom hCoV-19/England/LOND-D703F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G11083T C14805T G26144T ATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29815-

EPI_ISL_478455
 2020-04-03 2020-06-30
 United Kingdom hCoV-19/England/LOND-D704E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A26530G ATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29815-

EPI_ISL_478456
 2020-04-03 2020-06-30
 United Kingdom hCoV-19/England/LOND-D705D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A23403G G27882A GGG28881AAC ATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29815-

EPI_ISL_478457
 2020-04-03 2020-06-30
 United Kingdom hCoV-19/England/LOND-D706C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G5578A C9666T G11083T C14805T T17247C G26144T ATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29815-

EPI_ISL_478458
 2020-04-03 2020-06-30
 United Kingdom hCoV-19/England/LOND-D707B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13517T C14408T A23403G C26534T GGG28881AAC ATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29815-

EPI_ISL_478520
 2020-04-03 2020-06-30
 United Kingdom hCoV-19/England/NORT-283BF3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11530T C14408T A23403G C25350T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478521
 2020-04-03 2020-06-30
 United Kingdom hCoV-19/England/NORT-283CD2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T T15297C G21157A G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478522
 2020-04-03 2020-06-30
 United Kingdom hCoV-19/England/NORT-283CE1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T C20270T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478645
 2020-04-03 2020-06-30
 United Kingdom hCoV-19/England/NORT-2959F4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G20663T A23403G T27222C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478648
 2020-04-03 2020-06-30
 United Kingdom hCoV-19/England/NORT-295AA6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478652
 2020-04-03 2020-06-30
 United Kingdom hCoV-19/England/NORT-295B76/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478655
 2020-04-03 2020-06-30
 United Kingdom hCoV-19/England/NORT-295BD0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C9430T G11083T G11266A C14805T G26144T C26456T G29751T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478657
 2020-04-03 2020-06-30
 United Kingdom hCoV-19/England/NORT-295BFE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G8258A G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479759
 2020-04-03 2020-07-01
 United States hCoV-19/USA/FL-Miami-04_UMTL-95QV/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C1059T C3037T C4931T C14408T A23403G G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_480072
 2020-04-03 2020-07-01
 Japan hCoV-19/Japan/PG-0403/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACT1- C241T C313T C3037T C14408T G17427T A23403G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_480082
 2020-04-03 2020-07-01
 Japan hCoV-19/Japan/PG-0413/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_480141
 2020-04-03 2020-07-01
 Japan hCoV-19/Japan/PG-0482/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTC1- C241T C313T C3037T C14408T A23403G G25879T GGG28881AAC TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_480142
 2020-04-03 2020-07-01
 Japan hCoV-19/Japan/PG-0483/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G G26730A GGG28881AAC GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_480143
 2020-04-03 2020-07-01
 Japan hCoV-19/Japan/PG-0484/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C313T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480159
 2020-04-03 2020-07-01
 Japan hCoV-19/Japan/PG-0500/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C11074T G11083T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480173
 2020-04-03 2020-07-01
 Japan hCoV-19/Japan/PG-0515/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C313T C3037T C3429T G4300T C14408T A23403G G25249T G25563C GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_480183
 2020-04-03 2020-07-01
 Japan hCoV-19/Japan/PG-0525/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C9979T C14408T A23403G T26486C GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480187
 2020-04-03 2020-07-01
 Japan hCoV-19/Japan/PG-0529/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G GGG28881AAC TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_480197
 2020-04-03 2020-07-01
 Japan hCoV-19/Japan/PG-0541/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACT1- C241T C3037T C14408T A20268G A23403G TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_480222
 2020-04-03 2020-07-01
 Japan hCoV-19/Japan/PG-0590/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C1059T C3037T C14184T C14408T A23403G G25563T TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_480815 MT703982
 2020-04-03 2020-07-02
 United States SARS-CoV-2/human/USA/FL-BPHL-0164/2020
 ATT1- C241T C1059T C3037T C14408T C19170T A23403G G25471C G25563T T27384C ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_480817 MT703984
 2020-04-03 2020-07-02
 United States SARS-CoV-2/human/USA/FL-BPHL-0166/2020
 AT1- C241T C1059T C3037T C14408T C19983T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_480818 MT703985
 2020-04-03 2020-07-02
 United States SARS-CoV-2/human/USA/FL-BPHL-0167/2020
 AT1- C241T T833C C1059T C3037T C14408T C17285T A23403G G25563T C27964T AATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29849-

EPI_ISL_481272 MT704126
 2020-04-03 2020-07-02
 United States SARS-CoV-2/human/USA/MD-MDH-0026/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- T490A C3177T C6040T C8782T G12478A T18736C C24034T T26729C T27553G G28077C T28144C C28896G A29700G A29731T C29739A T29748G T29753G C29774T A29776T AG29780CC G29862C -29866G

EPI_ISL_481664
 2020-04-03 2020-07-03
 Finland hCoV-19/Finland/3A19S9/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481665
 2020-04-03 2020-07-03
 Finland hCoV-19/Finland/3A21S9/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481666
 2020-04-03 2020-07-03
 Finland hCoV-19/Finland/3A26S9/2020
 C241T C1059T C2470T C3037T C14408T A23403G G24368T G25563T C29466T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481667
 2020-04-03 2020-07-03
 Finland hCoV-19/Finland/3A47S9/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481668
 2020-04-03 2020-07-03
 Finland hCoV-19/Finland/3A56S9/2020
 C241T C1059T C2507T C3037T C14408T C15026T A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481750
 2020-04-03 2020-07-03
 Canada hCoV-19/Canada/NB_257/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6312A G11083T C13730T C23929T C28311T ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_482294
 2020-04-03 2020-07-03
 United States hCoV-19/USA/OR-PROV-003/2020
 C241T C1059T C1457T C3037T C14408T A23403G G25302T G25563T

EPI_ISL_482302
 2020-04-03 2020-07-03
 United States hCoV-19/USA/OR-PROV-015/2020
 C32T G2944A A4236G G11083T C12778T C14805T T25655C G26144T

EPI_ISL_482303
 2020-04-03 2020-07-03
 United States hCoV-19/USA/OR-PROV-016/2020
 G11083T C14805T G26144T C29614T

EPI_ISL_482304
 2020-04-03 2020-07-03
 United States hCoV-19/USA/OR-PROV-017/2020
 C241T C1059T C3037T T3312C C14408T A23403G G25563T

EPI_ISL_482448
 2020-04-03 2020-07-03
 United States hCoV-19/USA/OR-PROV-206/2020
 C241T C3037T C13665A C14408T A23403G GGG28881AAC

EPI_ISL_482744 MT704812
 2020-04-03 2020-07-03
 Serbia SARS-CoV-2/human/SRB/UE92/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A G11083T C11833A C13536T C14408T A23403G C23731T G26529T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_483382
 2020-04-03 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0822-SAN/2020
 ATTA1- C241T C1059T C1887T C3037T C14408T G22205C A23403G G25563T A29558G

EPI_ISL_483587
 2020-04-03 2020-07-08
 Singapore hCoV-19/Singapore/564/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C6310A C6312A G11083T C12596T C13730T C19524T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_483589
 2020-04-03 2020-07-08
 Singapore hCoV-19/Singapore/566/2020
 ATTAAAGGTTTATACCTTCC1- C6310A C6312A C9870T G11083T C13730T G18653R C19524T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_483612
 2020-04-03 2020-07-08
 Singapore hCoV-19/Singapore/589/2020
 ATTAAAGGTTTATACCTTCC1- C955T C6310A C6312A G11083T C13730T C19524T C23929T G26062T C28311T C28758T AAAAAAAAAAAA29892-

EPI_ISL_483714
 2020-04-03 2020-07-08
 Israel hCoV-19/Israel/n14287/2020
 C241T C313T AA2473- C3037T C14408T G17808T A20531- A23403G GGG28881AAC

EPI_ISL_484796
 2020-04-03 2020-07-08
 United States hCoV-19/USA/MI-UM-2006S001040/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C6638T C14408T A23403G C23613T G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_486288
 2020-04-03 2020-07-10
 United States hCoV-19/USA/CA-CZB-2044/2020
 ATTA1- C241T C1059T C3037T C7528T C14408T G20238K A22904M A23122V A23403G G25563T T25902W T25908W G25913S G27261T

EPI_ISL_487724
 2020-04-03 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB6288/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- TTA516- G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487808
 2020-04-03 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5402/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2841T C3037T C5183T C10798A C13862T C14408T A23403G C28836T A29031R CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487851
 2020-04-03 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3052/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G21305A T21861C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487897
 2020-04-03 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3005/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487966
 2020-04-03 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB4829/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487968
 2020-04-03 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3019/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3543T C8660M C14408T C16289T A23403G G23426T G25429T C27800T C28932Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488187
 2020-04-03 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F9F0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T T5840C C14408T C15222T T15501A G20578T A23403G G25563T C26681Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488193
 2020-04-03 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12FA39/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1670Y C3037T C14408T G16864T A23403G C23758Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488251
 2020-04-03 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12FA48/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18464T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488261
 2020-04-03 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12FAA2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A18077G C19170T G19509A C22000T G22103C A23403G C28585T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488268
 2020-04-03 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F9C3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T G21295K A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488293
 2020-04-03 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12FA0C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C541M C683Y C3037T C9286T G10097A C14408T A23403G C23731T C28253Y G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488315
 2020-04-03 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12FA2A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T C2706T A7025G C9724T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488341
 2020-04-03 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12FA57/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C17249T G17722T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488347
 2020-04-03 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12FB18/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488389
 2020-04-03 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12FAC0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1570C A2205G C3037T T3493C C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488390
 2020-04-03 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12FAFD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2164A C3037T G10255T C14408T G21082S A21085M T21087C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488392
 2020-04-03 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12FB09/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4897T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488419
 2020-04-03 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12FA1B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488432
 2020-04-03 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F9D2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A G10180T C14408T A23403G C23731T G28580T GGG28881AAC C29421T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488439
 2020-04-03 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12FA66/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G G24197T G25563T C26735T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488457
 2020-04-03 2020-07-14
 United Kingdom hCoV-19/England/NORT-295A3D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G18859T A21137G G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488489
 2020-04-03 2020-07-14
 United Kingdom hCoV-19/England/NORT-295B94/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5284T C13862T C14408T A23403G T25202K G28396T C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488502
 2020-04-03 2020-07-14
 United Kingdom hCoV-19/England/NORT-283B4E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1687T C3037T C14408T A20465R A23403G T25202K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488504
 2020-04-03 2020-07-14
 United Kingdom hCoV-19/England/NORT-283B3F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- A2916T G4720T G17193A C23664T C25810T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488567
 2020-04-03 2020-07-14
 United Kingdom hCoV-19/England/NORT-295CDD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T3909C G6373T G11083T C14805T C21789T T25202K G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488586
 2020-04-03 2020-07-14
 United Kingdom hCoV-19/England/NORT-283BA8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G15438T A20268G A23403G T25202K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488592
 2020-04-03 2020-07-14
 United Kingdom hCoV-19/England/NORT-295B49/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1912T C3037T A11600G C14408T A23403G T25202K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488595
 2020-04-03 2020-07-14
 United Kingdom hCoV-19/England/NORT-295B58/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1912T C3037T A11600G C14408T A23403G T25202K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488598
 2020-04-03 2020-07-14
 United Kingdom hCoV-19/England/NORT-295A5B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G C26447T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488610
 2020-04-03 2020-07-14
 United Kingdom hCoV-19/England/NORT-295B3A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1191T C1912T C3037T A11600G C14408T A23403G T25202K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488629
 2020-04-03 2020-07-14
 United Kingdom hCoV-19/England/NORT-295B85/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G T25202K C26447T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488634
 2020-04-03 2020-07-14
 United Kingdom hCoV-19/England/NORT-295BA3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2869G C3037T C14408T G16487K A23403G T25202K T27722Y C27964Y GGG28881AAC C29095T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488698
 2020-04-03 2020-07-14
 United Kingdom hCoV-19/England/NORT-295B2B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1912T C3037T A11600G C14408T A23403G T25202K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488710
 2020-04-03 2020-07-14
 United Kingdom hCoV-19/England/NORT-295B67/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C2558T G11083T C14805T G26144T G28851T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488742
 2020-04-03 2020-07-14
 United Kingdom hCoV-19/England/NORT-283D57/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G24535T G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488827
 2020-04-03 2020-07-14
 United Kingdom hCoV-19/England/NORT-283BE4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6026Y T7087Y G10097A C14408T A23403G C23731T C24026T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488835
 2020-04-03 2020-07-14
 United Kingdom hCoV-19/England/NORT-283C2D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A14994G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488879
 2020-04-03 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3046/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488889
 2020-04-03 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3033/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13458T C14408T T21861C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488891
 2020-04-03 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3023/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488910
 2020-04-03 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3050/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4999T C13730T C14408T C21627Y A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488920
 2020-04-03 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3042/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C7945T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488929
 2020-04-03 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3043/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9223T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488932
 2020-04-03 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3031/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488938
 2020-04-03 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3002/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488948
 2020-04-03 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3024/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T21861C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488949
 2020-04-03 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3014/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4904T C14408T C16289T A23403G G25429T A26579T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488956
 2020-04-03 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3037/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7420T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488979
 2020-04-03 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3025/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4956R C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488982
 2020-04-03 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3013/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12400T C14408T A23403G T25436C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488992
 2020-04-03 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3045/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A361G C3037T C11775T C14408T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488993
 2020-04-03 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3027/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3543T C8146T C14408T C16289T A23403G G23426T G25429T C27800T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489001
 2020-04-03 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3078/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4999T C13730T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489004
 2020-04-03 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3035/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7420T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489005
 2020-04-03 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3004/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3880T C14408T T17126C A20268G G21372T A23403G G24197A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489008
 2020-04-03 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3000/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3425T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489032
 2020-04-03 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3020/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6578T C14408T C18348T A23403G AAATTG26096- C26882T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489038
 2020-04-03 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3032/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4476A G9224A C11514T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489050
 2020-04-03 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3041/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C5646T C10632T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489052
 2020-04-03 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3040/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12400T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489061
 2020-04-03 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3028/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491128
 2020-04-03 2020-07-16
 Oman hCoV-19/Oman/8600/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T G10265A C14408T C16293T A23403G GGG28881AAC -29861T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_491481
 2020-04-03 2020-07-17
 United States hCoV-19/USA/COM0001/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G8083T C14408T C16349T C21110T A23403G G25563T C27964T C28846T G29781C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491922 MT776416
 2020-04-03 2020-07-17
 United States SARS-CoV-2/human/USA/VA_NIDDL_2925/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G G25563T G28086T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492187
 2020-04-03 2020-07-20
 United Kingdom hCoV-19/England/BRIS-132848/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T CT14408TC A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492213
 2020-04-03 2020-07-20
 United Kingdom hCoV-19/England/BRIS-1853346/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T3931C G11083T C14805T G26144T G28857T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492242
 2020-04-03 2020-07-20
 United Kingdom hCoV-19/England/BRIS-18532FE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4073T C6026T C14408T G21724T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492869
 2020-04-03 2020-07-20
 United Kingdom hCoV-19/England/LOND-124C452/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T A9744G G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493128
 2020-04-03 2020-07-20
 United States hCoV-19/USA/WY-WYPHL-20007680/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C3037T C14408T A23403G G25563T A26855G

EPI_ISL_493742
 2020-04-03 2020-07-21
 United Kingdom hCoV-19/Scotland/CVR1513/2020
 A1- C241T C3037T C14408T C22879A A23403G

EPI_ISL_494372
 2020-04-03 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1119/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T C3037T A3337G C5241T C14408T A23403G C25350T C25566T

EPI_ISL_494373
 2020-04-03 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1120/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C4540T G4904T G5206T C14408T A23403G C24138T C25350T

EPI_ISL_494374
 2020-04-03 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1121/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C4540T G4904T G5206T C14408T A19073G A23403G C24138T C25350T G28179T

EPI_ISL_494378
 2020-04-03 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1126/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C14408T A23403G C25350T C25566T

EPI_ISL_494379
 2020-04-03 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1127/2020
 ATTAAAGGT1- C241T C3037T C4540T G4904T G5206T C14408T C17172T A23403G C24138T C25350T

EPI_ISL_494668
 2020-04-03 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1578/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T C1887T A2205C C3037T C14408T C21575T A23403G G25563T C28708T

EPI_ISL_495598
 2020-04-03 2020-07-23
 United States hCoV-19/USA/MN-MDH-1299/2020
 ATTA1- C8782T C17747T A17858G C18060T A24694T T28144C G28812T TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_498167
 2020-04-03 2020-07-27
 Colombia hCoV-19/Colombia/96791/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_499272
 2020-04-03 2020-07-28
 United Kingdom hCoV-19/England/PORT-2D1D2D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5340T C14408T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_499274
 2020-04-03 2020-07-28
 United Kingdom hCoV-19/England/PORT-2D1D4B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1457T A2480G C2558T T6556G C9474T C9870T G11083T C14805T G26144T C26892T CACCGAGGCCACGCGGAGTACGATCGAGTG29730- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_499366
 2020-04-03 2020-07-28
 United Kingdom hCoV-19/Wales/PHWC-168F08/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C6990T G10870K C14408T A23403G C29200T C29870M

EPI_ISL_499384
 2020-04-03 2020-07-28
 United Kingdom hCoV-19/Wales/PHWC-169031/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C6990T C14408T A23403G G25650K C29200T A29903-

EPI_ISL_507026 MT820484
 2020-04-03 2020-07-30
 Saudi Arabia SARS-CoV-2/human/SAU/KAIMRC62/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C14408T C18877T A23403G G25563T C26735T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507031 MT820489
 2020-04-03 2020-07-30
 Saudi Arabia SARS-CoV-2/human/SAU/KAIMRC70/2020
 ATTAAAGGTTT1- C241T C3037T C14408T C18877T A23403G G25563T C25889T C26735T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507081
 2020-04-03 2020-08-03
 United Kingdom hCoV-19/England/LOND-124D2EE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C19488T A23403G GGG28881AAC G29543T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_507134
 2020-04-03 2020-08-03
 United Kingdom hCoV-19/England/PORT-2D1BE7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1457T A2480G C2558T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507161
 2020-04-03 2020-08-03
 United Kingdom hCoV-19/England/SHEF-C2389/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21614T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507163
 2020-04-03 2020-08-03
 United Kingdom hCoV-19/England/SHEF-C433C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A11839G C14408T T19839C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507607
 2020-04-03 2020-08-03
 United States hCoV-19/USA/MI-MDHHS-SC21353/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T G578A C1059T C1670T C3037T C14408T A23403G G25563T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_507608
 2020-04-03 2020-08-03
 United States hCoV-19/USA/MI-MDHHS-SC21354/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C14408T A23403G G25563T C28887Y ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_507611
 2020-04-03 2020-08-03
 United States hCoV-19/USA/MI-MDHHS-SC21357/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25563T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_507616
 2020-04-03 2020-08-03
 United States hCoV-19/USA/MI-MDHHS-SC21362/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C10198T C10908T C11916T C14408T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_507622
 2020-04-03 2020-08-03
 United States hCoV-19/USA/MI-MDHHS-SC21368/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C1059T C3037T C14408T C15194T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_507623
 2020-04-03 2020-08-03
 United States hCoV-19/USA/MI-MDHHS-SC21369/2020
 ATTAAAGGTTTATACCT1- C241T C1059T C3037T C14408T C20436T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_507885
 2020-04-03 2020-08-03
 United States hCoV-19/USA/MI-MDHHS-SC21109/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATC1- C241T C1059T T1417A C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_508128
 2020-04-03 2020-08-04
 Australia hCoV-19/Australia/SAP437/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C4710T C14408T A23403G G23856A T25473C T27233C GGG28881AAC

EPI_ISL_508385
 2020-04-03 2020-08-04
 India hCoV-19/India/IK6/2020
 C7945T C8782T G22468T G22487C T28144C G28878A G29742A G29868A

EPI_ISL_508394
 2020-04-03 2020-08-04
 India hCoV-19/India/IK7/2020
 ATTAAAGGTTTA1- C7945T C8782T G22468T G27008T G27077T T28144C G28878A G29742A G29868A

EPI_ISL_508974
 2020-04-03 2020-08-04
 France hCoV-19/France/ARA18783/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATG1- C241T C3037T C14408T C15324T A23403G C25904T T26504C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_508977
 2020-04-03 2020-08-04
 France hCoV-19/France/ARA19311/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C3037T A3842G C8251T C14408T C15324T A15860G A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_508978
 2020-04-03 2020-08-04
 France hCoV-19/France/ARA19340/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGC1- C241T C1059T C3037T C14408T A23403G G25563T G28325A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_508979
 2020-04-03 2020-08-04
 France hCoV-19/France/ARA19556/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCA1- C241T C2416T C3037T G8371T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_508980
 2020-04-03 2020-08-04
 France hCoV-19/France/ARA19570/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCG1- C241T C3037T C14408T C15324T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_509073
 2020-04-03 2020-08-05
 United States hCoV-19/USA/OR-OHSU-0221/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T G21830T C23124G A23403G G24751T G25563T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_509074
 2020-04-03 2020-08-05
 United States hCoV-19/USA/OR-OHSU-0222/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T G21830T C23124G A23403G G24751T G25563T CTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29784-

EPI_ISL_509075
 2020-04-03 2020-08-05
 United States hCoV-19/USA/OR-OHSU-0232/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A4236G A6601G G11083T C14805T T25655C G26144T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_509445 MT827207
 2020-04-03 2020-07-31
 United States SARS-CoV-2/human/USA/MD-MDH-0041/2020
 ATTAAA1- C241T C823T C1059T C3037T C11866T T11980C C14408T A23403G G25563T

EPI_ISL_509446 MT827208
 2020-04-03 2020-07-31
 United States SARS-CoV-2/human/USA/MD-MDH-0042/2020
 ATTA1- C241T C1059T C3037T C14408T TAT22189- A23403G G25563T G29690T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_509519
 2020-04-03 2020-08-05
 Australia hCoV-19/Australia/NSW2280/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_511033
 2020-04-03 2020-08-07
 Portugal hCoV-19/Portugal/PT0774/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C241T C3037T C14408T G17964T TTA21991- A23403G C23664T A26530G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511185
 2020-04-03 2020-08-07
 Portugal hCoV-19/Portugal/PT0928/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C2416T C3037T C4276T C14408T C15720T A23403G G25563T C28253T A29365G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511488
 2020-04-03 2020-08-08
 Portugal hCoV-19/Portugal/PT0937/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T A20268G A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511874
 2020-04-03 2020-08-09
 United States hCoV-19/USA/MD-HP01656/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G5555A C14408T A23403G G24368C G25563T C27005T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_512814 MT872493
 2020-04-03 2020-08-11
 Sierra Leone SARS-CoV-2/human/SLE/KGH-G-8604/2020
 ATTAA1- C6312A G11083T C13730T C23929T C28311T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_512815 MT872494
 2020-04-03 2020-08-11
 Sierra Leone SARS-CoV-2/human/SLE/KGH-G-8607/2020
 ATTAAAGGTTTATACCTTC1- C241T C3037T C14408T A23403G A25397G GGG28881AAC

EPI_ISL_517512
 2020-04-03 2020-08-24
 United Kingdom hCoV-19/England/PORT-2D2B04/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G C25433T C29546T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_520730
 2020-04-03 2020-08-25
 United Arab Emirates hCoV-19/United Arab Emirates/L920639763/2020
 C241T C3037T C6636T C14408T C18877T A23403G G25563T

EPI_ISL_522691 MT973329
 2020-04-03 2020-08-26
 Australia SARS-CoV-2/human/AUS/TAS263/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G102K C4540T A4624G C8782T T9477A C14805T G22364K G22410K G25979T G26062T T28144C C28311T C28657T C28863T C29837M ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_522856
 2020-04-03 2020-08-26
 Italy hCoV-19/Italy/VR-IZSVe-46-41/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- A187G C241T C3037T C9996T C14408T C14889T A23403G C25658T A26166T GCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29783-

EPI_ISL_523973
 2020-04-03 2020-08-27
 Brazil hCoV-19/Brazil/SP-177/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T C10778T C14408T C18683T A23403G T27299C GGG28881AAC T29148C AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_523975
 2020-04-03 2020-08-27
 Brazil hCoV-19/Brazil/SP-179/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- T115C C241T C3037T C12053T C14408T A23403G G25088T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_524432
 2020-04-03 2020-08-28
 United States hCoV-19/USA/NC-200313/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C10319T C12525T C14408T A23403G G25563T C27964T GAGTACGATCGAGT29745- AATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29805-

EPI_ISL_524620
 2020-04-03 2020-08-28
 United Kingdom hCoV-19/England/LOND-12612C6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3261T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524623
 2020-04-03 2020-08-28
 United Kingdom hCoV-19/England/LOND-126133C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A A27669G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524630
 2020-04-03 2020-08-28
 United Kingdom hCoV-19/England/LOND-126109F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C19170T G19509A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524634
 2020-04-03 2020-08-28
 United Kingdom hCoV-19/England/LOND-1261105/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C835T G1397A T9037C G11083T G14653A C15240T C28311G T28688C G29742T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524647
 2020-04-03 2020-08-28
 United Kingdom hCoV-19/England/LOND-1260FDF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7072Y C14408T A23403G G26640T C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524682
 2020-04-03 2020-08-28
 United Kingdom hCoV-19/England/LOND-1261026/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T8649C C14408T A23403G G24368T G25563T C29635Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524693
 2020-04-03 2020-08-28
 United Kingdom hCoV-19/England/LOND-1261484/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11962T C14408T A19543C A23403G T25848C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524704
 2020-04-03 2020-08-28
 United Kingdom hCoV-19/England/LOND-1260F75/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G T27384C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524705
 2020-04-03 2020-08-28
 United Kingdom hCoV-19/England/LOND-1261062/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524712
 2020-04-03 2020-08-28
 United Kingdom hCoV-19/England/LOND-1261527/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9979T C14408T A19686G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524792
 2020-04-03 2020-08-28
 Brazil hCoV-19/Brazil/AP-IEC-162620/2020
 C241T C3037T C14396T C14408T A23403G T27299C GGG28881AAC T29148C

EPI_ISL_525651
 2020-04-03 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-37630-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T G13558A C14408T A23403G G25563T C28821T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_525652
 2020-04-03 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-37640-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G C25626T GGG28881AAC TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_526494
 2020-04-03 2020-09-01
 United Kingdom hCoV-19/Scotland/EDB6859/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3100G C3987T G10097A CC14407TT C17939T C18687T A23403G C23731T G25947T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_527381
 2020-04-03 2020-09-03
 United States hCoV-19/USA/FL-AO2N/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T AAGTGCAGCCCGTCTTACACCGTGCGGCAC13482- C14408T A23403G GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_528538
 2020-04-03 2020-09-08
 United Arab Emirates hCoV-19/United Arab Emirates/H29/2020
 C8782T C16293T G26211T T28144C G28774T G28878A G29742A

EPI_ISL_529692
 2020-04-03 2020-09-10
 United Kingdom hCoV-19/Scotland/EDB6935/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1076T C3037T T8822G C10582T C14408T A23403G G25563T G27758T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530055
 2020-04-03 2020-09-10
 Spain hCoV-19/Spain/MD-LP52/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12970T C14408T A20268G A23403G C28333T ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_530232
 2020-04-03 2020-09-11
 Australia hCoV-19/Australia/QLD967/2020/P1
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_530276
 2020-04-03 2020-09-11
 Australia hCoV-19/Australia/QLD1016/2020/P1
 AT1- T1368C C6990T C10156T G11083T G12202T C14805T C20736T C23707T G26144T A26440C

EPI_ISL_534837
 2020-04-03 2020-09-14
 United Kingdom hCoV-19/England/OXON-B30DF/2020
 A2480G C2558T C3737T G11083T C14805T G25354T G26144T C27679T

EPI_ISL_534926
 2020-04-03 2020-09-14
 United Kingdom hCoV-19/England/OXON-B4065/2020
 C241T C3037T C14408T A23403G

EPI_ISL_534966
 2020-04-03 2020-09-14
 United Kingdom hCoV-19/England/OXON-B46BE/2020
 C241T C3037T A11519G C14408T A23403G GGG28881AAC AAAAAAAAAA29894-

EPI_ISL_536412
 2020-04-03 2020-09-16
 Singapore hCoV-19/Singapore/871/2020
 ATTAAAGGTTTATACC1- C6310A C6312A A9419G G11083T C13730T C19524T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_537385
 2020-04-03 2020-09-16
 Spain hCoV-19/Spain/RI-CSIC-99005842/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- G160T C241T C1059T C3037T C12880A T13006C C14408T G17302T A23403G C24034T G25563T C25688T C27476T C29205T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_537443
 2020-04-03 2020-09-16
 Spain hCoV-19/Spain/RI-CSIC-99005905/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C5621T T13006C C14408T C17172A A23403G G25563T C25688T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_537498
 2020-04-03 2020-09-16
 United States hCoV-19/USA/CA-UCLA-159/2020
 ATTAAAGGTTTA1- C2676T C8782T C16646T C21575T A22606T G23755T T28144C G28878A G29742A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_537859
 2020-04-03 2020-09-16
 Spain hCoV-19/Spain/RI-CSIC-98002358/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T TGGTCATGTTATGGT508- C1059T C3037T T13006C C14408T C17004T A23403G G25563T C25688T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_538162
 2020-04-03 2020-09-16
 Spain hCoV-19/Spain/AN-CSIC-98001806/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C14408T C17639T A20268G A23403G A28222G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_538355
 2020-04-03 2020-09-16
 Canada hCoV-19/Canada/ON-OICR-SLB2829/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2416T C3037T C14408T A23403G G25563T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_538356
 2020-04-03 2020-09-16
 Canada hCoV-19/Canada/ON-OICR-SLB2830/2020
 ATTAAAGG1- C241T C2416T C3037T C14408T A23403G G25563T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_538359
 2020-04-03 2020-09-16
 Canada hCoV-19/Canada/ON-OICR-SLB2835/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2416T C3037T C14408T G20679A A23403G G23593T G25563T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_538360
 2020-04-03 2020-09-16
 Canada hCoV-19/Canada/ON-OICR-SLB2836/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C7382A G11083T C14408T C18877T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_538362
 2020-04-03 2020-09-16
 Canada hCoV-19/Canada/ON-OICR-SLB2841/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- G160T C241T C1059T C3037T G8371T C14408T A23403G G25217T G25563T G29688T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_538365
 2020-04-03 2020-09-16
 Canada hCoV-19/Canada/ON-OICR-SLB2844/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G C25433T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_538473
 2020-04-03 2020-09-17
 Singapore hCoV-19/Singapore/939/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C2937T C6310A C6312A G11083T C13730T C19524T C23929T C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538474
 2020-04-03 2020-09-17
 Singapore hCoV-19/Singapore/940/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6310A C6312A G11083T C13730T C19524T C23929T C28311T C28432T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538795
 2020-04-03 2020-09-17
 United Kingdom hCoV-19/England/LEED-2AA4CE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1514T C3037T C14408T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538815
 2020-04-03 2020-09-17
 United Kingdom hCoV-19/England/LEED-2AA1C7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4551T C14408T T18351C A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538886
 2020-04-03 2020-09-17
 United Kingdom hCoV-19/England/LEED-2AA3EF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C23575T G23587C C29741T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538893
 2020-04-03 2020-09-17
 United Kingdom hCoV-19/England/LEED-2AA5CB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6883T C14408T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538903
 2020-04-03 2020-09-17
 United Kingdom hCoV-19/England/LEED-2AA200/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18657T A20268G A23403G C27442T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539007
 2020-04-03 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A893A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C2558T A3964G G11083T C14805T G22344T G26144T G28851T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539010
 2020-04-03 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9052/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T C4158T C6070T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539017
 2020-04-03 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A87C7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3230A C8389T C14408T A23403G C23453T G25563T C26111Y C29774Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539018
 2020-04-03 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8D98/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539037
 2020-04-03 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8BDA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3250T C14408T G23108S A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539063
 2020-04-03 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8132/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6312T C14408T C15324T A23403G G28881T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539067
 2020-04-03 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A835A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6145T C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539073
 2020-04-03 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A89B2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539092
 2020-04-03 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A824E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5055T C14408T T15522C A17039G T17835C A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539096
 2020-04-03 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8B61/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A10505G C12623T C14408T A23403G C23679T C27046T GGG28881AAC C29627T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539106
 2020-04-03 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A87B8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21807A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539113
 2020-04-03 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A89FE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539124
 2020-04-03 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8FCF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539145
 2020-04-03 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8994/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C593T C2558T C9724T C10156G G11071C C11074T G11083T C14805T G26144T G28851T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539254
 2020-04-03 2020-09-17
 Spain hCoV-19/Spain/VC-IBV-98003445/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A20268G A23403G G28690T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_539255
 2020-04-03 2020-09-17
 Spain hCoV-19/Spain/VC-IBV-98003446/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23403G G25269T C29144T TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_539256
 2020-04-03 2020-09-17
 Spain hCoV-19/Spain/VC-IBV-98003447/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T G19542T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539258
 2020-04-03 2020-09-17
 Spain hCoV-19/Spain/VC-IBV-98003451/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- T514C G558K ATG1605- A2512W G3259K C10456T G13571K G16508K G17014T C17410T AGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29687-

EPI_ISL_539851
 2020-04-03 2020-09-21
 China hCoV-19/Hong Kong/VM20008964/2020
 ATTAAA1- C241T C3037T C14408T A23403G C27046T GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_542594
 2020-04-03 2020-09-23
 United States hCoV-19/USA/TX-HMH-1228/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T130C C241T C3037T T5065C C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542605
 2020-04-03 2020-09-23
 United States hCoV-19/USA/TX-HMH-1241/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T130C C241T C3037T T5065C C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542606
 2020-04-03 2020-09-23
 United States hCoV-19/USA/TX-HMH-1242/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T130C C241T C3037T T5065C C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542681
 2020-04-03 2020-09-23
 United States hCoV-19/USA/TX-HMH-1375/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T C1059T G1323T C3037T G11083T C14408T C21587T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542777
 2020-04-03 2020-09-23
 United States hCoV-19/USA/TX-HMH-1530/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542778
 2020-04-03 2020-09-23
 United States hCoV-19/USA/TX-HMH-1531/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10188T C14408T A23403G T24982C G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543703
 2020-04-03 2020-09-23
 United States hCoV-19/USA/TX-HMH-454/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T G29688T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543724
 2020-04-03 2020-09-23
 United States hCoV-19/USA/TX-HMH-457/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C6040T C8782T C8950T G12478A T18736C C24034T C25413T T26729C G28077C T28144C C28896G C29451T A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543753
 2020-04-03 2020-09-23
 United States hCoV-19/USA/TX-HMH-461/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C25613T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543767
 2020-04-03 2020-09-23
 United States hCoV-19/USA/TX-HMH-463/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3784T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543776
 2020-04-03 2020-09-23
 United States hCoV-19/USA/TX-HMH-464/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C7124T C8782T C9561T T18736C G19636A T21973C C24034T C25433T T26729C C26895T G28077C T28144C A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544585
 2020-04-03 2020-09-24
 United States hCoV-19/USA/TX-HMH-519/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C6040T C8782T C8950T G12478A T18736C C24034T T26729C G28077C T28144C C28896G C29451T A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544588
 2020-04-03 2020-09-24
 United States hCoV-19/USA/TX-HMH-520/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C6040T C8782T C8950T G12478A T18736C T19713C C24034T T26729C G28077C T28144C C28896G C29451T A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544595
 2020-04-03 2020-09-24
 United States hCoV-19/USA/TX-HMH-521/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T G27047T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545691
 2020-04-03 2020-09-24
 United States hCoV-19/USA/TX-HMH-790/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T T21015C A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545869
 2020-04-03 2020-09-24
 United States hCoV-19/USA/TX-HMH-849/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6616G A10691G C14408T G15243T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545870
 2020-04-03 2020-09-24
 United States hCoV-19/USA/TX-HMH-850/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6616G A10691G C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545873
 2020-04-03 2020-09-24
 United States hCoV-19/USA/TX-HMH-853/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6616G G14118T C14408T G15243T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545874
 2020-04-03 2020-09-24
 United States hCoV-19/USA/TX-HMH-854/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545953
 2020-04-03 2020-09-24
 United States hCoV-19/USA/TX-HMH-996/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- T490A C3177T C5284T C6040T C6648T C8782T C8950T G12478A T18736C C24034T T26729C G28077C T28144C C28896G C29451T A29700G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_546810
 2020-04-03 2020-09-24
 United States hCoV-19/USA/TX-HMH-751/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C6040T C8782T C8950T G12478A G15906T T18736C C24034T T26729C G28077C T28144C C28896G C29451T A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546824
 2020-04-03 2020-09-24
 United States hCoV-19/USA/TX-HMH-753/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G3471T C10377T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547109
 2020-04-03 2020-09-24
 United States hCoV-19/USA/TX-HMH-592/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10188T C12459T C14408T T15978C A23403G T24982C G25563T A27421G C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547495
 2020-04-03 2020-09-24
 Netherlands hCoV-19/Netherlands/NH-RIVM-10062/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G29422T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_548124
 2020-04-03 2020-09-25
 New Zealand hCoV-19/New Zealand/AUK-ESR-20VR2096/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G713T A2480G C2558T G11083T C14805T G26144T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_560576
 2020-04-03 2020-09-29
 France hCoV-19/France/CVL8282/2020
 ATTAAAGGTTTATACCTTC1- C241T AAGTCATTT686- C1059T C3037T T13006C C14408T A23403G G25563T C25688T C28453T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_560597
 2020-04-03 2020-09-29
 France hCoV-19/France/HDF8255/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C36T C241T C1059T A2311G C3037T C9891T C14408T C16308T A23403G G23876A G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_560748
 2020-04-03 2020-09-29
 United States hCoV-19/USA/MN-MDH-1661/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- A2480G C2558T C10908T G11083T C14805T G26144T A27169G GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_560749
 2020-04-03 2020-09-29
 United States hCoV-19/USA/MN-MDH-1662/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C1059T C3037T C14408T A23403G G25563T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_560750
 2020-04-03 2020-09-29
 United States hCoV-19/USA/MN-MDH-1663/2020
 AT1- C241T C3037T C14408T C21707T A23403G A26530G TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_560752
 2020-04-03 2020-09-29
 United States hCoV-19/USA/MN-MDH-1665/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G8695A C8782T C17747T A17858G C18060T A24694T T28144C TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_565955
 2020-04-03 2020-09-30
 United States hCoV-19/USA/MI-MDHHS-SC21894/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C5549T C14408T T15918C A23403G CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_565957
 2020-04-03 2020-09-30
 United States hCoV-19/USA/MI-MDHHS-SC21896/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- A187G C241T G520A G779R C3037T G11083K C14408T A23403G C25916T TGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29840-

EPI_ISL_565967
 2020-04-03 2020-09-30
 United States hCoV-19/USA/MI-MDHHS-SC21906/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C1059T C3037T C14408T A23403G G25563T G27226K G29779K TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_565976
 2020-04-03 2020-09-30
 United States hCoV-19/USA/MI-MDHHS-SC21915/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25563T C25976A CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_568992
 2020-04-03 2020-10-02
 France hCoV-19/France/IHU-0923/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T G8371T T10489C G11083T C14408T C19160T A23403G G25563T G28027T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569519
 2020-04-03 2020-10-02
 France hCoV-19/France/IHU-0452/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1059T C3037T T13006C C14391T C14408T A23403G G25563T C25688T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569609
 2020-04-03 2020-10-02
 United States hCoV-19/USA/SD-SDPHL-0001/2020
 ATTA1- C241T C1059T C3037T C14408T A23403G G25563T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

MT706220
 2020-04-03 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-100/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11417T T14073C C14408T A23403G A23947G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706223
 2020-04-03 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-103/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11417T T14073C C14408T A23403G A23947G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT731673
 2020-04-03 2020-07-08
 Morocco SARS-CoV-2/human/MAR/RMPS03/2020
 C241T C1684T C3037T G6404T C8208T C14408T C15324T G22363T A23403G C29362T

MT810599
 2020-04-03 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1119-CS2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T A3337G C5241T C14408T A23403G C25350T C25566T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810600
 2020-04-03 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1120-CS2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C4540T G4904T G5206T C14408T A23403G C24138T C25350T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810601
 2020-04-03 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1121-CS2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C4540T G4904T G5206T C14408T A19073G A23403G C24138T C25350T G28179T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810605
 2020-04-03 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1126-CS2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A23403G C25350T C25566T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810606
 2020-04-03 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1127-CS2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C4540T G4904T G5206T C14408T C17172T A23403G C24138T C25350T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810869
 2020-04-03 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1578-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C1887T A2205C C3037T C14408T C21575T A23403G G25563T C28708T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810978
 2020-04-03 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0355-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T C18877T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810997
 2020-04-03 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0381-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A23403G GGG28881AAC CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811672
 2020-04-03 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0158-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C12462T C14408T A23403G C24034T G25563T C25703T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811680
 2020-04-03 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0166-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C3738T C10319T C14408T A23403G G25563T C27964T G29543T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811681
 2020-04-03 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0167-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C10319T C14408T G22424T A23403G G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811683
 2020-04-03 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0170-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T T7562C C14408T C19032T T19527C A23403G G25563T C27964T C28099T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811693
 2020-04-03 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0214-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C10319T C14408T C23202T A23403G G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT856679
 2020-04-03 2020-08-06
 United States SARS-CoV-2/human/USA/SC-USC-COM0001/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G8083T C14408T C16349T C21110T A23403G G25563T C27964T C28846T G29781C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT873065
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00168/2020
 C241T C2416T C3037T C14408T A23403G G25563T G26233T

MT873070
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00060/2020
 ATTAAA1- C241T C2416T C3037T A5725G C14408T C16887T A23403G C24096A G25563T

MT873084
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00145/2020
 AT1- C241T C2416T C3037T A5725G C14408T C16887T A23403G C24096A G25563T

MT873086
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00137/2020
 C241T C2416T C3037T A5725G C14408T C16887T A23403G C24096A G25563T

MT873088
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00117/2020
 G105T C241T C3037T C14408T C18877T A23403G G25563T

MT873089
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00144/2020
 C241T AAGTCATTT686- C2416T C3037T C10440T C14408T A23403G G25563T G26233T

MT873094
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00053/2020
 A1- C241T G947A C2106T C3037T C14408T A23403G C28603T G28899T A29903-

MT873095
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00167/2020
 C241T C2416T C3037T C14318T C14408T A23403G G25563T G26233T

MT873097
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00100/2020
 G105T C241T C3037T C14408T C18877T A23403G G25563T

MT873110
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00142/2020
 C241T C2416T C3037T A5725G C14408T C16887T A23403G C24096A G25563T AAAAAAAAAAAAAAAAAAAAAA29882-

MT873117
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00114/2020
 G105T C241T C3037T C14408T C18877T A23403G G25563T AAAAA29899-

MT873124
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00081/2020
 C241T C2416T C3037T A5725G C14408T C16887T A23403G C24096A G25563T

MT873126
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00058/2020
 ATTAAA1- G105T C241T C3037T C14408T C18877T A23403G G25563T

MT873130
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00075/2020
 C241T C2416T C3037T A5725G C14408T C16887T A23403G C24096A G25563T AAAAAAAAAAAAAAAAAAAAAAAAA29879-

MT873141
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00115/2020
 C241T C2416T C3037T A5725G C14408T C16887T A23403G C24096A G25563T

MT873157
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00087/2020
 G105T C241T C3037T C14408T C18877T A23403G G25563T

MT873158
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00140/2020
 C241T C2416T C3037T A5725G C14408T C16887T A23403G C24096A G25563T

MT873165
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00126/2020
 G105T C241T C3037T C14408T C18877T A23403G G25563T

MT873168
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00074/2020
 ATTAAA1- C241T C2416T C3037T A5725G C14408T C16887T A23403G C24096A G25563T

MT873172
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00110/2020
 ATTAA1- C241T C2416T C3037T A5725G C14408T C16887T A23403G C24096A G25563T

MT873179
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00108/2020
 G105T C241T C3037T C14408T C18877T A23403G G25563T

MT873180
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00121/2020
 C241T C2416T C3037T C8281T C14408T A22007T A23403G G25563T G26233T C26681T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

MT873190
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00156/2020
 C241T C2416T C3037T C14408T A23403G G25563T G26233T

MT873194
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00063/2020
 ATTAAA1- C241T C2106T C3037T C14408T A23403G C28603T G28899T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

MT873197
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00139/2020
 ATTAAA1- C241T C2416T C3037T T4813C C14408T A23403G G25563T G26233T

MT873204
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00159/2020
 C241T C2416T C3037T C14408T A23403G G25563T G26233T

MT873207
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00102/2020
 G105T C241T C3037T C14408T C18877T A23403G G25563T

MT873212
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00118/2020
 C241T C2416T C3037T C8281T C14408T A22007T A23403G G25563T G26233T C26681T

MT873217
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00165/2020
 C241T C2416T C3037T A5725G C14408T C16887T A23403G C24096A G25563T

MT873222
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00176/2020
 C241T C2106T C3037T C14408T A23403G C28603T G28899T

MT873228
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00065/2020
 ATTAAA1- C241T C2416T C3037T A5725G C14408T C16887T A23403G C24096A G25563T

MT873231
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00084/2020
 ATTAAA1- C241T C2416T C3037T A5725G C14408T C16887T A23403G C24096A G25563T

MT873233
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00098/2020
 G105T C241T C3037T C14408T C18877T A23403G G25563T

MT873236
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00076/2020
 C241T C2416T C3037T C14408T A23403G G25563T G26233T

MT873240
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00054/2020
 C241T C2416T C3037T A5725G C14408T C16887T A23403G C24096A G25563T

MT873243
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00057/2020
 C241T C2416T C3037T C8281T C14408T G14449T A22007T A23403G G25563T G26233T

MT873247
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00135/2020
 G105T C241T C3037T C14408T C18877T A23403G G25563T

MT873266
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00106/2020
 ATTAAA1- C241T C2416T C3037T A5725G C14408T C16887T A23403G C24096A G25563T

MT873273
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00122/2020
 ATTAA1- C19T C241T C2416T C3037T C11752T C14408T A23403G T23560C G25563T G26233T

MT873281
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00150/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C1059T C3037T C14408T A23403G G25563T A27821G

MT873284
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00107/2020
 G105T C241T C3037T C14408T C18877T A23403G G25563T

MT873287
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00091/2020
 C241T C2416T C3037T A5725G C14408T C16887T A23403G C24096A G25563T

MT873303
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00113/2020
 C241T C2416T C3037T C14408T A23403G G25563T G26233T

MT873304
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00068/2020
 ATTAAA1- G105T C241T C3037T C14408T C18877T A23403G G25563T

MT873309
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00164/2020
 C241T C2416T C3037T A5725G C14408T C16887T A23403G C24096A G25563T

MT873318
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00151/2020
 G105T C241T C3037T C14408T C18877T A23403G G25563T

MT873321
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00129/2020
 C241T C2416T C3037T C10440T C14408T A23403G G25563T G26233T

MT873326
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00169/2020
 C241T C2416T C3037T A5725G C14408T C16887T A23403G C24096A G25563T

MT873328
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00052/2020
 ATTAAA1- C241T C2416T C3037T C14408T A23403G T25265A G25563T G26233T

MT873330
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00157/2020
 C241T C2416T C3037T A5725G C14408T C16887T A23403G C24096A G24933T G25563T C25916A C27247T

MT873342
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00166/2020
 ATTAAA1- G105T C241T C3037T C14408T C18877T A23403G G25563T

MT873343
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00109/2020
 ATTAAA1- C241T C2416T C3037T A5725G C14408T C16887T A23403G C24096A G25563T

MT873356
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00090/2020
 C241T C2416T C3037T C8281T C14408T A22007T A23403G G25563T G26233T

MT873362
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00130/2020
 G105T C241T C3037T C14408T C18877T A23403G G25563T

MT873382
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00080/2020
 ATTAAA1- C241T C2416T C3037T A5725G C14408T C16887T A23403G C24096A G25563T

MT873383
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00170/2020
 G105T C241T C3037T C14408T C18877T A23403G G25563T

MT873390
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00124/2020
 G105T C241T C3037T A9826G C14408T C18877T A23403G G25563T

MT873401
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00092/2020
 G105T C241T C3037T C14408T C18877T A23403G G25563T

MT873402
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00158/2020
 ATT1- C241T C2416T C3037T C8281T C14408T G21746C A22007T A23403G G25563T G26233T

MT873405
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00138/2020
 C241T C2416T C3037T A5725G C14408T C16887T A23403G C24096A G25563T

MT873426
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00143/2020
 ATTAAA1- C241T C2416T C3037T C14408T A23403G G25563T G26233T

MT873428
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00104/2020
 ATTAAA1- G105T C241T C3037T C14408T C18877T A23403G G25563T

MT873436
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00163/2020
 ATTAAA1- C241T C2416T C3037T T6931C C14408T A23403G G25563T G26233T

MT873439
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00089/2020
 ATTAAA1- C241T C2416T C3037T A5725G C14408T C16887T A23403G A23902T C24096A G25563T T28251C

MT873444
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00083/2020
 ATTAAA1- C241T C2416T C3037T A5725G G7743T C14408T C16887T A23403G C24096A G25563T

MT873451
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00116/2020
 G105T C241T C3037T C14408T C18877T A23403G G25563T

MT873454
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00095/2020
 C241T C2416T C3037T A5725G C9969T C14408T C16887T A23403G C24096A G25563T

MT873455
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00134/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C2416T C3037T C12068T C14408T A23403G G25563T G26233T

MT873462
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00062/2020
 C241T C2416T C3037T T3460C G5048T C8281T C14408T A22007T A23403G G25563T G26233T

MT873464
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00149/2020
 C241T C2416T C3037T A5725G C14408T C16887T A23403G C24096A G25563T

MT873466
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00147/2020
 A1- C241T C2416T C3037T A5725G C14408T C16887T A23403G C24096A G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

MT873473
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00123/2020
 G105T C241T C3037T C14408T C18877T A23403G G25563T

MT873477
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00105/2020
 A1- C241T C2416T C3037T A5725G C14408T C16887T A23403G C24096A G25563T

MT873491
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00127/2020
 ATTAAA1- C241T C2416T C3037T A5725G C14408T C16887T A23403G C24096A G25563T

MT873498
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00148/2020
 ATTAAA1- C241T C2416T C3037T A5725G C14408T C16887T A23403G C24096A G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

MT873507
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00094/2020
 ATTAAA1- C241T C2416T C3037T A5725G C14408T C16887T A23403G C24096A G25563T

MT919768
 2020-04-03 2020-08-25
 Philippines SARS-CoV-2/human/PHL/GS/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C66T C6312A G11083T C13730T C23929T C26224T C28311T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_418651
 2020-04-04 2020-03-30
 Belgium hCoV-19/Belgium/ULG-9634/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7564T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_424642
 2020-04-04 2020-04-13
 Belgium hCoV-19/Belgium/ULG-10077/2020
 C241T A618G C3037T G3994A C14408T C15324T A23403G G24821T

EPI_ISL_424643
 2020-04-04 2020-04-13
 Belgium hCoV-19/Belgium/ULG-10089/2020
 G1440A G2891A C26340T

EPI_ISL_424644
 2020-04-04 2020-04-13
 Belgium hCoV-19/Belgium/ULG-10086/2020
 C241T C679T C875T C3037T C14408T C15324T A23403G

EPI_ISL_424645
 2020-04-04 2020-04-13
 Belgium hCoV-19/Belgium/ULG-10085/2020
 C241T C2113T C2306T C3037T C7765T C14408T C17690T C18877T A23403G G25563T G28280A

EPI_ISL_424646
 2020-04-04 2020-04-13
 Belgium hCoV-19/Belgium/ULG-10088/2020
 G1440A G2891A C26340T

EPI_ISL_424647
 2020-04-04 2020-04-13
 Belgium hCoV-19/Belgium/ULG-10092/2020
 C241T C3037T C14408T C15324T C15738T G17259T A23403G G25776T

EPI_ISL_425150
 2020-04-04 2020-04-14
 United States hCoV-19/USA/WI-UW-93/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4755T C14408T G15760A A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425161
 2020-04-04 2020-04-14
 United States hCoV-19/USA/WI-UW-104/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C125T C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_426475 MT350257
 2020-04-04 2020-04-17
 United States SARS-CoV-2/human/USA/VA-DCLS-0068/2020
 ATTAAA1- G8R C241T C2416T C3037T C10626T C10712T C14408T A23403G G25563T C28887T C29733T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_427100 MT451584
 2020-04-04 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC836/2020
 T490A C3177T C6285T C8782T C15960T T18736C G19684T C24034T C27635T G28077C T28144C A29700G

EPI_ISL_427101 MT451585
 2020-04-04 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC837/2020
 C241T C1594T C3037T C3874T C8290T C11109T C14408T C18788T A23403G G25563T

EPI_ISL_427102 MT451586
 2020-04-04 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC842/2020
 C241T C1059T C3037T G8185A C14408T T17380C T21931C A23403G C23785T G25563T

EPI_ISL_427103 MT451587
 2020-04-04 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC843/2020
 C241T C3037T C14408T A23403G

EPI_ISL_427105 MT451589
 2020-04-04 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC845/2020
 C241T C1594T C3037T C3768T C8290T C11109T C14408T C18788T A23403G G25563T G29399T

EPI_ISL_427106 MT451590
 2020-04-04 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC846/2020
 C884T G1397A C3040T G8653T -11075TTT G11083T C14932T C27999T T28688C G29742T

EPI_ISL_427107 MT451591
 2020-04-04 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC847/2020
 C8782T C17747T A17858G C18060T A24694T T28144C

EPI_ISL_427108 MT451592
 2020-04-04 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC848/2020
 C241T C1059T C3037T C14408T A23403G G25563T G27916T

EPI_ISL_427109 MT451593
 2020-04-04 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC849/2020
 C241T C1059T C3037T C14408T C22414M A23403G G25563T

EPI_ISL_427111 MT451595
 2020-04-04 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC851/2020
 C241T C3037T C14408T A23403G GGG28881AAC C29259T

EPI_ISL_427113 MT451597
 2020-04-04 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC853/2020
 C241T C3037T C14408T A23403G

EPI_ISL_427115 MT451599
 2020-04-04 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC856/2020
 C241T C2416T C3037T T12112C C14408T C17690T G21974C A23403G G25563T G26233T

EPI_ISL_427319
 2020-04-04 2020-04-18
 Russia hCoV-19/Russia/StPetersburg-RII4597S/2020
 C3037T C14408T A20268G A23403G C24034T

EPI_ISL_427620
 2020-04-04 2020-04-19
 United States hCoV-19/USA/AK-PHL101/2020
 ATTAAAGGTTTAT1- C241T C1059T C3037T C14408T C16457T A23403G G25523T G25563T T27869C GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_428385 MT635255
 2020-04-04 2020-04-20
 United States SARS-CoV-2/human/USA/CT-Yale-066/2020
 C241T C1059T C3037T C14408T A23403G G25563T G28077T

EPI_ISL_428791
 2020-04-04 2020-04-22
 United States hCoV-19/USA/NY-NYUMC277/2020
 C241T C1059T C3037T C14408T C21742T A23403G C23635T G25563T

EPI_ISL_428792
 2020-04-04 2020-04-22
 United States hCoV-19/USA/NY-NYUMC278/2020
 C241T C1059T C3037T C11916T C14408T C18998T A19902G A23403G G25563T G28307T G29540A

EPI_ISL_429976 MT415901
 2020-04-04 2020-04-24
 United States SARS-CoV-2/human/USA/VA-DCLS-0077/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2416T C3037T G4523A C10712T C14408T A23403G G25563T C29870A

EPI_ISL_430578 MT451726
 2020-04-04 2020-04-27
 Australia SARS-CoV-2/human/AUS/VIC1062/2020
 C241T C3037T T13210C G13348T C14408T A20268G A23403G G29260T

EPI_ISL_430670 MT451728
 2020-04-04 2020-04-27
 Australia SARS-CoV-2/human/AUS/VIC1067/2020
 C241T C3037T T7438C C14408T A23403G C29353T

EPI_ISL_430809
 2020-04-04 2020-04-27
 Argentina hCoV-19/Argentina/PAIS_A018/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATC1- C241T C3037T C4002T G10097A G11083T C13536T C14408T C18246T A23403G C23731T GGG28881AAC ATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29850-

EPI_ISL_430917 MT412274
 2020-04-04 2020-04-28
 United States SARS-CoV-2/human/USA/CT-UW-5749/2020
 ATTAAAGGTTTAT1- A14T CCCAGGTAACAAACCAA19- CC36TA C241T C3037T C10138T C14408T A23403G C25452T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_430926 MT412283
 2020-04-04 2020-04-28
 United States SARS-CoV-2/human/USA/CT-UW-5772/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- C36T C241T C3037T T11879C C14408T C18877T A23403G G25563T C26681T TG29867AA C29870A -29904AAAAAAAAAAAAAA

EPI_ISL_430927 MT412284
 2020-04-04 2020-04-28
 United States SARS-CoV-2/human/USA/CT-UW-5773/2020
 ATTAAAGG1- ATACCTTCCCAGGTAACAAACC12- C36T C241T C1059T C3037T A6331G C10851T C14183T C14408T A23403G G25563T C29199T AAAA29900-

EPI_ISL_432178
 2020-04-04 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-2A12B/2020
 C241T C3037T C14408T T19839C A23403G C26873T GGG28881AAC

EPI_ISL_432181
 2020-04-04 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-29E16/2020
 C241T A1367C C3037T C14408T C19814Y A20268G A23403G C28854T

EPI_ISL_432186
 2020-04-04 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-29E61/2020
 A1- C241T C2416T C3037T C14408T C14786T C19884T A23403G G25563T

EPI_ISL_432187
 2020-04-04 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-2A06A/2020
 C241T C3037T C14408T C16289T C20594T A23403G G25429T G28300T

EPI_ISL_432193
 2020-04-04 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-29BC4/2020
 ATTA1- C241T C3037T C5506T G14241T C14408T A23403G

EPI_ISL_432194
 2020-04-04 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-29E43/2020
 A1- C241T C3037T A3633W G9220A C14408T A23403G T26512C

EPI_ISL_432195
 2020-04-04 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-29C3A/2020
 A1- C241T C3037T C14408T C19170T G19509A A23403G GGG28881AAC

EPI_ISL_432197
 2020-04-04 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-29DDD/2020
 C241T C1059T C3037T C10376T C14408T G18583T G21724T T21745C A23403G G24368T G25563T G29773T

EPI_ISL_432201
 2020-04-04 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-2A0E2/2020
 ATTA1- C241T C3037T G13749T C14408T G17808T G21624T A23403G G27915T GGG28881AAC A29865R

EPI_ISL_432203
 2020-04-04 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-29E52/2020
 C241T T1918C C3037T C14408T C18877T A23403G G25563T

EPI_ISL_432204
 2020-04-04 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-2A10D/2020
 C241T C3037T A3911G C8772T C14408T A23403G C26028T C27970Y

EPI_ISL_432205
 2020-04-04 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-29E34/2020
 C241T C3037T G11083T C14408T A23403G GGG28881AAC

EPI_ISL_432215
 2020-04-04 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-29DCE/2020
 ATTA1- G174A C241T C313T C3037T C14408T A23403G C26873T GGG28881AAC

EPI_ISL_432219
 2020-04-04 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-29C0D/2020
 C241T C1059T C3037T C10376T C14408T G18583T A23403G G24368T G25563T G29773T

EPI_ISL_432229
 2020-04-04 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-29D91/2020
 A1- C241T C3037T G11521T C14408T G15016T A23403G GGG28881AAC C29284T

EPI_ISL_432230
 2020-04-04 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-2A0B5/2020
 ATTAAAGGT1- C241T C3037T G10097A C14408T C17678T C21575T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_432234
 2020-04-04 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-2A097/2020
 C241T C683T C3037T C14408T C14741T C21516T A23403G C29640T

EPI_ISL_432243
 2020-04-04 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-29BF1/2020
 ATTA1- C241T C3037T C14408T C14741T A23403G

EPI_ISL_432244
 2020-04-04 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-29D55/2020
 ATTA1- C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_432251
 2020-04-04 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-2A088/2020
 ATTAA1- C241T C3037T T3100G G10097A C13584T C14408T A23403G C23731T G25947T GGG28881AAC

EPI_ISL_432252
 2020-04-04 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-2A0F1/2020
 AT1- C241T C3037T A3911G C14408T A23403G C26028T

EPI_ISL_432253
 2020-04-04 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-29B79/2020
 ATT1- G1440A G2891A C7011T

EPI_ISL_432259
 2020-04-04 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-29DFB/2020
 G1440A G2891A C25669T C27549Y G28851T

EPI_ISL_432267
 2020-04-04 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-29E07/2020
 ATTA1- C241T C3037T C14408T A23403G

EPI_ISL_432274
 2020-04-04 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-2A11C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T G1589R C3037T C14408T A23403G G25429T G29474T

EPI_ISL_432297
 2020-04-04 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-29D82/2020
 C241T C1059T C3037T C14408T A23403G G24368T C24621T G25563T C28893T C29353T

EPI_ISL_432880
 2020-04-04 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB921/2020
 C241T C3037T C14408T C22879A A23403G

EPI_ISL_432885
 2020-04-04 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB926/2020
 C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_433049
 2020-04-04 2020-04-29
 United Kingdom hCoV-19/England/NOTT-10F792/2020
 G1440A G2891A C10507T

EPI_ISL_433244
 2020-04-04 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB788/2020
 C241T C1059T C1076T C3037T C10582T C14408T A23403G G25563T C26461T

EPI_ISL_433247
 2020-04-04 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB799/2020
 C241T C1377T C3037T C14408T C16289T A23403G G25429T G28077T

EPI_ISL_433248
 2020-04-04 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB801/2020
 A187G C241T C3037T C14408T A23403G

EPI_ISL_433250
 2020-04-04 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB821/2020
 G370T T9208G G11083T C14805T T17247C G26144T

EPI_ISL_433253
 2020-04-04 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB838/2020
 C241T C3037T C14408T C21549T A23403G GGG28881AAC

EPI_ISL_433254
 2020-04-04 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB842/2020
 C241T C313T C3037T T3268C C14408T A23403G GGG28881AAC

EPI_ISL_433255
 2020-04-04 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB848/2020
 C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_433256
 2020-04-04 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB852/2020
 C241T C3037T G10523C T14079C C14408T A23403G GGG28881AAC

EPI_ISL_433257
 2020-04-04 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB860/2020
 C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_433260
 2020-04-04 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB868/2020
 C241T C3037T A3215G C14408T G15438T A20268G A23403G G27217T

EPI_ISL_433261
 2020-04-04 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB877/2020
 C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_433262
 2020-04-04 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB880/2020
 C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_433263
 2020-04-04 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB884/2020
 C241T C313T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_433265
 2020-04-04 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB886/2020
 C241T C3037T C14408T C16289T A23403G G25429T

EPI_ISL_433266
 2020-04-04 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB888/2020
 C241T C3037T G4255T G8653T C14408T C20480T A23403G C23481T A26507T A26530G G27746T C28253T

EPI_ISL_433267
 2020-04-04 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB889/2020
 C241T C3037T C14408T A23403G C25433T

EPI_ISL_433621
 2020-04-04 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR1569/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3551A T12066C C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_433626
 2020-04-04 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR1588/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_433632
 2020-04-04 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR1622/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_433638
 2020-04-04 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR1635/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C12710T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_433701
 2020-04-04 2020-04-29
 United Kingdom hCoV-19/England/CAMB-779FA/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_433709
 2020-04-04 2020-04-29
 United Kingdom hCoV-19/England/CAMB-78285/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_433710
 2020-04-04 2020-04-29
 United Kingdom hCoV-19/England/CAMB-78294/2020
 C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC

EPI_ISL_433711
 2020-04-04 2020-04-29
 United Kingdom hCoV-19/England/CAMB-782A3/2020
 C241T C3037T C14408T G16852T A23403G GGG28881AAC

EPI_ISL_433713
 2020-04-04 2020-04-29
 United Kingdom hCoV-19/England/CAMB-782D0/2020
 C241T C3037T C14408T A23403G C27679T GGG28881AAC

EPI_ISL_433717
 2020-04-04 2020-04-29
 United Kingdom hCoV-19/England/CAMB-78319/2020
 C241T C3037T C14408T C16289T A23403G G25429T G27915A

EPI_ISL_433735
 2020-04-04 2020-04-29
 United Kingdom hCoV-19/England/CAMB-78461/2020
 C241T C3037T C14408T G22132A A23403G GGG28881AAC C29358T

EPI_ISL_433737
 2020-04-04 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7848F/2020
 C241T C3037T C14408T A21137G C21638T A23403G G25429T

EPI_ISL_434071 MT632868
 2020-04-04 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S311/2020
 C3311A C8782T C17747T A17858G C18060T G21305A T28144C

EPI_ISL_434077 MT632856
 2020-04-04 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S317/2020
 C3311A C8782T G17671T C17747T A17858G C18060T G21305A T28144C

EPI_ISL_434079 MT632897
 2020-04-04 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S319/2020
 C3311A C8782T G17671T C17747T A17858G C18060T T28144C

EPI_ISL_434093 MT632911
 2020-04-04 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S333/2020
 C3311A C8782T G17671T C17747T A17858G C18060T T28144C

EPI_ISL_434094 MT632785
 2020-04-04 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S334/2020
 C241T C1059T C3037T G7560A C14408T G19999T G21452T C21646T A23403G G25563T

EPI_ISL_434100 MT632895
 2020-04-04 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S340/2020
 C3311A C8782T G17671T C17747T A17858G C18060T T28144C

EPI_ISL_434106 MT632847
 2020-04-04 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S346/2020
 C3311A C8782T G17671T C17747T A17858G C18060T C22290T T28144C

EPI_ISL_434224 MT632896
 2020-04-04 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S464/2020
 C241T C1059T C3037T C5986T C6040T C14408T A23403G G25563T

EPI_ISL_434239 MT632958
 2020-04-04 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S479/2020
 G1401A C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434466
 2020-04-04 2020-04-29
 Greece hCoV-19/Greece/53/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- GTTATG515- A2480G C2558T G6872A C9491T G11083T C14805T G26144T TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_434665
 2020-04-04 2020-04-30
 Sweden hCoV-19/Sweden/20-07042/2020
 C241T C1059T C3037T A3894G C8917T C14408T C18501T A23403G G24368T G25563T A25718G

EPI_ISL_435470
 2020-04-04 2020-05-05
 United States hCoV-19/USA/LA-SR0169/2020
 C241T C1059T C3037T C14408T A23403G C24034T G25563T C27964T

EPI_ISL_435472
 2020-04-04 2020-05-05
 United States hCoV-19/USA/LA-SR0174/2020
 C241T GTCATGTTA510- C1059T C3037T G3969A C10319T G11083T G14186A C14408T A23403G G25563T C27964T

EPI_ISL_436636 MT706448
 2020-04-04 2020-05-06
 United States SARS-CoV-2/human/USA/WI-UW-342/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_436943 MT446343
 2020-04-04 2020-05-07
 United States SARS-CoV-2/human/USA/LA-BIE-075/2020
 C241T C1059T C1225T C3037T C14408T A23403G G25563T C27964T

EPI_ISL_437045 MT449638
 2020-04-04 2020-05-08
 United States SARS-CoV-2/human/USA/CA-CZB-1045/2020
 ATTAAAGGT1- A14940G T15922Y

EPI_ISL_437046 MT449639
 2020-04-04 2020-05-08
 United States SARS-CoV-2/human/USA/CA-CZB-1046/2020
 C4475T C10277T C14178T A23796G

EPI_ISL_437048 MT449641
 2020-04-04 2020-05-08
 United States SARS-CoV-2/human/USA/CA-CZB-1048/2020
 ATT1- C10277T

EPI_ISL_437050 MT449643
 2020-04-04 2020-05-08
 United States SARS-CoV-2/human/USA/CA-CZB-1050/2020
 AT1- C37T C10277T T15922Y C27500T

EPI_ISL_437426 MT450912
 2020-04-04 2020-05-08
 United States SARS-CoV-2/human/USA/VA-DCLS-0211/2020
 ATTAAAGGTT1- C241T C1059T C3037T C14408T A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_437427 MT450913
 2020-04-04 2020-05-08
 United States SARS-CoV-2/human/USA/VA-DCLS-0212/2020
 ATTAAAGGTTTA1- C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_437428 MT450914
 2020-04-04 2020-05-08
 United States SARS-CoV-2/human/USA/VA-DCLS-0213/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G A24484T G25563T

EPI_ISL_437429 MT450915
 2020-04-04 2020-05-08
 United States SARS-CoV-2/human/USA/VA-DCLS-0214/2020
 AT1- C241T C1059T C3037T C14408T A23403G A24484T G25563T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_437435
 2020-04-04 2020-05-08
 Serbia hCoV-19/Serbia/KV26-04/2020
 C241T C3037T G10265A C14408T A15972G C19718T A23403G T28759C GGG28881AAC

EPI_ISL_437436
 2020-04-04 2020-05-08
 Serbia hCoV-19/Serbia/NP363-04/2020
 C241T C3037T G10265A C14408T A15972G C19718T A23403G T28759C GGG28881AAC

EPI_ISL_437651
 2020-04-04 2020-05-11
 Denmark hCoV-19/Denmark/ALAB-SSI-1406/2020
 G529T ATG1605- C12876T C28253A

EPI_ISL_437654
 2020-04-04 2020-05-11
 Denmark hCoV-19/Denmark/ALAB-SSI-1427/2020
 C241T C1059T C3037T C14408T C17125T A23403G G24368T G25563T

EPI_ISL_437655
 2020-04-04 2020-05-11
 Denmark hCoV-19/Denmark/ALAB-SSI-1434/2020
 C241T C1059T C3037T C12781T C14408T C15842A G22103C A23403G G25563T

EPI_ISL_437842 MT461642
 2020-04-04 2020-05-11
 United States SARS-CoV-2/human/USA/WA-UW-6483/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAA1- C241T C1059T C3037T C14408T A23403G G25563T G29553A G29864R TG29867AA C29870A -29904AAAAAAAAAAAAAAAA

EPI_ISL_437845 MT461645
 2020-04-04 2020-05-11
 United States SARS-CoV-2/human/USA/WA-UW-6486/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T C3037T C14408T A23403G G24075A G25563T C27476T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_437853 MT461650
 2020-04-04 2020-05-11
 United States SARS-CoV-2/human/USA/WA-UW-6507/2020
 AT1VD A4T A31T C36T C241T C1059T C3037T C14408T A23403G G25563T C27804T G29553A -29904AAAAAAAAAAAAAA

EPI_ISL_437854 MT461651
 2020-04-04 2020-05-11
 United States SARS-CoV-2/human/USA/WA-UW-6514/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C241T C1059T C3037T G13459T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_437855 MT461652
 2020-04-04 2020-05-11
 United States SARS-CoV-2/human/USA/WA-UW-6520/2020
 ATTAAAG1- AAC34TTT C241T C1059T C3037T C6040T C14408T C14599T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_437859 MT461656
 2020-04-04 2020-05-11
 United States SARS-CoV-2/human/USA/WA-UW-6535/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T C3037T C14408T A23403G G25563T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_437860 MT461657
 2020-04-04 2020-05-11
 United States SARS-CoV-2/human/USA/WA-UW-6546/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C1059T C3037T G4975T C14408T A23403G G25523T G25563T T27869C -29904AAAAAAA

EPI_ISL_437861 MT461658
 2020-04-04 2020-05-11
 United States SARS-CoV-2/human/USA/WA-UW-6547/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- C36T C5717T C8782T C17326T C17747T A17858G A17884G C18060T G19645T T28144C C29686A G29711T GG29861AA G29864A TG29867AA C29870A -29904AAAAAAAAAAAAAAAAAA

EPI_ISL_437862 MT461659
 2020-04-04 2020-05-11
 United States SARS-CoV-2/human/USA/WA-UW-6548/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTG1- C241T C1059T C3037T A12148T C13536T C14408T A23403G G25563T G29553A AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_438142
 2020-04-04 2020-05-12
 United States hCoV-19/USA/WA-S589/2020
 C241T C1059T C3037T C5717T C14408T A23403G G25563T G29553A

EPI_ISL_438143
 2020-04-04 2020-05-12
 United States hCoV-19/USA/WA-S590/2020
 C5784T C8782T C17747T A17858G C18060T G24794T G26730A T28144C

EPI_ISL_438144
 2020-04-04 2020-05-12
 United States hCoV-19/USA/WA-S591/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_438145
 2020-04-04 2020-05-12
 United States hCoV-19/USA/WA-S592/2020
 C241T C1059T C3037T C5717T C14408T A23403G G25563T G29553A

EPI_ISL_440670
 2020-04-04 2020-05-12
 United Kingdom hCoV-19/England/BRIS-122535/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G G7647T C7851T C9223T G11083T C12664T C14805T T17247C T25202K G26144T

EPI_ISL_441035
 2020-04-04 2020-05-12
 United Kingdom hCoV-19/England/LOND-D3DE1/2020
 C241T C3037T G11548A C14408T A23403G GGG28881AAC

EPI_ISL_441036
 2020-04-04 2020-05-12
 United Kingdom hCoV-19/England/LOND-D3DF0/2020
 C241T C3037T C14408T A23403G

EPI_ISL_441037
 2020-04-04 2020-05-12
 United Kingdom hCoV-19/England/LOND-D3E0C/2020
 G1440A G2891A C18401T A27669G A29496G

EPI_ISL_441038
 2020-04-04 2020-05-12
 United Kingdom hCoV-19/England/LOND-D3E1B/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_441039
 2020-04-04 2020-05-12
 United Kingdom hCoV-19/England/LOND-D3E39/2020
 T1368C C6990T A9634T G11083T C14805T C23707T G26144T

EPI_ISL_441040
 2020-04-04 2020-05-12
 United Kingdom hCoV-19/England/LOND-D3E48/2020
 C241T A1112G C3037T C14408T A23403G GGG28881AAC

EPI_ISL_441041
 2020-04-04 2020-05-12
 United Kingdom hCoV-19/England/LOND-D3E57/2020
 C241T G2164A C3037T C14408T A23403G GGG28881AAC

EPI_ISL_441042
 2020-04-04 2020-05-12
 United Kingdom hCoV-19/England/LOND-D3E66/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_441043
 2020-04-04 2020-05-12
 United Kingdom hCoV-19/England/LOND-D3E75/2020
 C241T C3037T G7798T C14408T A20268G A23403G C28854T

EPI_ISL_441045
 2020-04-04 2020-05-12
 United Kingdom hCoV-19/England/LOND-D3EA2/2020
 C241T C3037T C14408T A23403G

EPI_ISL_441046
 2020-04-04 2020-05-12
 United Kingdom hCoV-19/England/LOND-D3EB1/2020
 C241T C2416T C3037T C14408T C14786T G20578T A23403G G25563T A27038G

EPI_ISL_441047
 2020-04-04 2020-05-12
 United Kingdom hCoV-19/England/LOND-D3EFD/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_441049
 2020-04-04 2020-05-12
 United Kingdom hCoV-19/England/LOND-D3F90/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T

EPI_ISL_441050
 2020-04-04 2020-05-12
 United Kingdom hCoV-19/England/LOND-D3FAF/2020
 C241T C1059T C1437T C3037T T13006C C14408T A23403G G25563T C25688T A25864G

EPI_ISL_441051
 2020-04-04 2020-05-12
 United Kingdom hCoV-19/England/LOND-D3FBE/2020
 C241T C3037T A10948G A11117G C14408T A23403G C27542T GGG28881AAC

EPI_ISL_442066
 2020-04-04 2020-05-12
 United Kingdom hCoV-19/England/CAMB-7B871/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14120T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_442094
 2020-04-04 2020-05-12
 United Kingdom hCoV-19/England/CAMB-7BC93/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C147A C4540T C8782T T9477A C14805T A21489C T25202K G25979T T28144C C28311T C28657T C28863T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_442097
 2020-04-04 2020-05-12
 United Kingdom hCoV-19/England/CAMB-7BCEE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C392T C3037T C14408T C19488T A23403G T25202K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_442155
 2020-04-04 2020-05-12
 United Kingdom hCoV-19/England/CAMB-7BDDC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10702T C14408T T19329C A23403G T25202K ATTGAACTTTCATTAATTGACTTCTATTTGTGCTTT27759- GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_442192
 2020-04-04 2020-05-12
 United Kingdom hCoV-19/England/CAMB-7C97D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1933R C3037T C6990T C14408T A23403G G25650T A26530R C29200T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_442193
 2020-04-04 2020-05-12
 United Kingdom hCoV-19/England/CAMB-7BCC0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G18027T A23403G GGG28881AAC

EPI_ISL_442954
 2020-04-04 2020-05-12
 United Kingdom hCoV-19/England/CAMB-80CB9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14120T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_443253
 2020-04-04 2020-05-12
 United States hCoV-19/USA/MN-UMGC-2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1238T C8782T C17747T A17858G C18060T T28144C T28924C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_444079
 2020-04-04 2020-05-13
 United Kingdom hCoV-19/England/LOND-D3FCD/2020
 G11083T C14805T C23707T G26144T

EPI_ISL_444080
 2020-04-04 2020-05-13
 United Kingdom hCoV-19/England/LOND-D3FDC/2020
 A2480G C2558T C8605T T9642C G11083T C14805T C25904T G26144T C26994T

EPI_ISL_444081
 2020-04-04 2020-05-13
 United Kingdom hCoV-19/England/LOND-D3FEB/2020
 C241T C3037T C14408T A23403G G25429T

EPI_ISL_444082
 2020-04-04 2020-05-13
 United Kingdom hCoV-19/England/LOND-D3FFA/2020
 C241T C3037T A9243G C14408T A23403G C25350T

EPI_ISL_444083
 2020-04-04 2020-05-13
 United Kingdom hCoV-19/England/LOND-D4005/2020
 C241T C3037T G5063A C14408T A23403G GGG28881AAC

EPI_ISL_444084
 2020-04-04 2020-05-13
 United Kingdom hCoV-19/England/LOND-D4014/2020
 C241T C3037T C14408T A23403G G26640T C27046T GGG28881AAC

EPI_ISL_444085
 2020-04-04 2020-05-13
 United Kingdom hCoV-19/England/LOND-D4023/2020
 C241T C3037T T11457C C14408T T17126C A23403G C25350T

EPI_ISL_444086
 2020-04-04 2020-05-13
 United Kingdom hCoV-19/England/LOND-D4032/2020
 T1368C C6990T G11083T C14805T C22075T C23707T G26144T

EPI_ISL_444087
 2020-04-04 2020-05-13
 United Kingdom hCoV-19/England/LOND-D4041/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T

EPI_ISL_444088
 2020-04-04 2020-05-13
 United Kingdom hCoV-19/England/LOND-D4050/2020
 C241T C3037T C14408T C19170T G19509A A23403G GGG28881AAC

EPI_ISL_444089
 2020-04-04 2020-05-13
 United Kingdom hCoV-19/England/LOND-D406F/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T

EPI_ISL_444090
 2020-04-04 2020-05-13
 United Kingdom hCoV-19/England/LOND-D407E/2020
 C241T C3037T C14408T A23403G T27384C GGG28881AAC

EPI_ISL_444091
 2020-04-04 2020-05-13
 United Kingdom hCoV-19/England/LOND-D408D/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_444856
 2020-04-04 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-1391/2020
 C241T C1059T C1302T C3037T C14408T A23403G G25563T

EPI_ISL_444971
 2020-04-04 2020-05-14
 Spain hCoV-19/Spain/Barcelona_VH6372/2020
 C241T C3037T C14408T A20268G A21625G A23403G G29734C

EPI_ISL_445087 MT459979
 2020-04-04 2020-05-12
 Serbia SARS-CoV-2/human/SRB/Novi Pazar-363/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A C14408T A15972G C19718T A23403G T28759C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_445374
 2020-04-04 2020-05-15
 Chile hCoV-19/Chile/Santiago_77/2020
 TT2AC GG7TA C241T C3037T C4002T T4011K G10097A C13536T C14408T A23403G C23731T C27804T GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_445375
 2020-04-04 2020-05-15
 Chile hCoV-19/Chile/Santiago_78/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T C27804T GGG28881AAC ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_445376
 2020-04-04 2020-05-15
 Chile hCoV-19/Chile/Santiago_79/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C900T G1268A C3037T A12180G C14408T C19263T A20268G A23403G T26679C AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_445378
 2020-04-04 2020-05-15
 Chile hCoV-19/Chile/Chillan_4/2020
 ATTA1CACC C241T C3037T G10265A C14408T A23403G A25080R GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_445980
 2020-04-04 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-2D3B9/2020
 ATTA1- C241T C3037T C14408T A23403G T28067A A28390C GGG28881AAC

EPI_ISL_446183
 2020-04-04 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-2EFB4/2020
 ATTAAAGGTT1- G1440A G2891A C25669Y G28851T

EPI_ISL_447420
 2020-04-04 2020-05-17
 Israel hCoV-19/Israel/13077875/2020
 C241T C1059T C3037T C11704T C11916T C14408T C18998T A23403G G25563T G29540A AAAAAAAAAAAA29892-

EPI_ISL_447422
 2020-04-04 2020-05-17
 Israel hCoV-19/Israel/13077846/2020
 C241T C1059T C3037T G8353A C11916T C14408T C18998T A23403G G25563T G29000T G29540A AAAAAAAAAAAA29892-

EPI_ISL_447424
 2020-04-04 2020-05-17
 Israel hCoV-19/Israel/13077823/2020
 C241T C1059T C2061T C3037T C11916T C14408T G17562T C18998T A23403G G25563T G29540A AAAAAAAAAAAA29892-

EPI_ISL_447795
 2020-04-04 2020-05-18
 Colombia hCoV-19/Colombia/GVI-97212/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T T5158C G9817A C14408T A23403G G25563T TAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29775-

EPI_ISL_447796
 2020-04-04 2020-05-18
 Colombia hCoV-19/Colombia/GVI-97321/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T C3037T C14408T A23403G G25297A GGG28881AAC AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_447797
 2020-04-04 2020-05-18
 Colombia hCoV-19/Colombia/GVI-97349/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTT1- C241T C274T C3037T C14408T C18877T A23403G G25563T C28708T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_447798
 2020-04-04 2020-05-18
 Colombia hCoV-19/Colombia/GVI-97417/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C3037T C6250T C14408T A23403G GGG28881AAC AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_447800
 2020-04-04 2020-05-18
 Colombia hCoV-19/Colombia/GVI-97718/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C3037T C14408T C18877T A23403G G25563T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_447802
 2020-04-04 2020-05-18
 Colombia hCoV-19/Colombia/GVI-97769/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T C3037T C14408T A23403G GGG28881AAC AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_447803
 2020-04-04 2020-05-18
 Colombia hCoV-19/Colombia/GVI-97782/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTG1- C241T C3037T C7728T C14408T A23403G A27433G GGG28881AAC AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_447804
 2020-04-04 2020-05-18
 Colombia hCoV-19/Colombia/GVI-97783/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C3037T C7728T C14408T A23403G A27433G GGG28881AAC AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_447805
 2020-04-04 2020-05-18
 Colombia hCoV-19/Colombia/GVI-97795/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C3037T C10507T C14408T C18877T A23403G G25563T GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_447806
 2020-04-04 2020-05-18
 Colombia hCoV-19/Colombia/GVI-97855/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T A476G C3037T C10507T C14408T C18877T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_447807
 2020-04-04 2020-05-18
 Colombia hCoV-19/Colombia/GVI-97875/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T A476G C3037T C10507T C14408T C18877T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_447808
 2020-04-04 2020-05-18
 Colombia hCoV-19/Colombia/GVI-97921/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTT1- C241T C3037T G8861A C10507T C14408T C18877T A23403G G25563T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_447809
 2020-04-04 2020-05-18
 Colombia hCoV-19/Colombia/GVI-98006/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C1059T C3037T C11916T C14408T C19018T T19632C A23403G G25563T G25641T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_447892 MT481932
 2020-04-04 2020-05-18
 United States SARS-CoV-2/human/USA/CA-CZB-1141/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C9561T C14408T C17410A A23403G G25563T C27964T GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_448497
 2020-04-04 2020-05-19
 United Kingdom hCoV-19/England/OXON-AC965/2020
 C241T C3037T C5310T T7216C C14408T C16468T A23403G G25012T GGG28881AAC

EPI_ISL_448516
 2020-04-04 2020-05-19
 United Kingdom hCoV-19/England/OXON-ACBBA/2020
 C92T C241T C3037T C7765T G10097A C14408T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_448536
 2020-04-04 2020-05-19
 United Kingdom hCoV-19/England/OXON-ACD96/2020
 C241T C2416T C3037T C14408T C14786T T16503C G17632T G20578T A23403G G25563T T27810C

EPI_ISL_449626
 2020-04-04 2020-05-19
 United Kingdom hCoV-19/England/LOND-D3B05/2020
 C241T C3037T C14408T C18508T A23403G A28572G GGG28881AAC

EPI_ISL_449627
 2020-04-04 2020-05-19
 United Kingdom hCoV-19/England/LOND-D3B14/2020
 C241T C1059T C3037T T8649C C14408T A23403G G24368T G25563T

EPI_ISL_449629
 2020-04-04 2020-05-19
 United Kingdom hCoV-19/England/LOND-D3B32/2020
 C241T G2164A C3037T C13115T C14408T A23403G GGG28881AAC

EPI_ISL_449630
 2020-04-04 2020-05-19
 United Kingdom hCoV-19/England/LOND-D3B41/2020
 C241T C3037T A10948G C14408T A23403G C27542T C28087T GGG28881AAC

EPI_ISL_449632
 2020-04-04 2020-05-19
 United Kingdom hCoV-19/England/LOND-D3B6F/2020
 A2480G C2558T C6636T G7042T C7573T GT9623TA G11083T C14805T T18592C G26144T

EPI_ISL_449633
 2020-04-04 2020-05-19
 United Kingdom hCoV-19/England/LOND-D3B8D/2020
 C241T C1642T C2485T C3037T C14408T A23403G G25429T

EPI_ISL_449636
 2020-04-04 2020-05-19
 United Kingdom hCoV-19/England/LOND-D3BBA/2020
 C241T C1059T C3037T A12229G C14408T A23403G G24368T G25563T G29179T

EPI_ISL_449637
 2020-04-04 2020-05-19
 United Kingdom hCoV-19/England/LOND-D3BC9/2020
 C241T C3037T C14408T C18788T T19839C A23403G GGG28881AAC

EPI_ISL_449639
 2020-04-04 2020-05-19
 United Kingdom hCoV-19/England/LOND-D3BE7/2020
 C241T C1059T C3037T C14408T C18788T A23403G G24368T G25563T C27661T

EPI_ISL_449640
 2020-04-04 2020-05-19
 United Kingdom hCoV-19/England/LOND-D3BF6/2020
 C241T AAGTCATTT686- C3037T G8602A C14408T A23403G C25782T A26530G G28739T

EPI_ISL_449644
 2020-04-04 2020-05-19
 United Kingdom hCoV-19/England/LOND-D3C3F/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_449645
 2020-04-04 2020-05-19
 United Kingdom hCoV-19/England/LOND-D3D3C/2020
 C5986T G11083T G13627T C14805T C15540T G25302T G26144T A28338G

EPI_ISL_449646
 2020-04-04 2020-05-19
 United Kingdom hCoV-19/England/LOND-D3D4B/2020
 C241T C3037T T11457C C14408T A23403G G25009A C25350T

EPI_ISL_449647
 2020-04-04 2020-05-19
 United Kingdom hCoV-19/England/LOND-D3D5A/2020
 A126T C241T C3037T G5917A C14408T A23403G T23849C GGG28881AAC

EPI_ISL_449648
 2020-04-04 2020-05-19
 United Kingdom hCoV-19/England/LOND-D3D69/2020
 C241T C3037T C11962T C14408T A19543C A23403G T25848C GGG28881AAC

EPI_ISL_449649
 2020-04-04 2020-05-19
 United Kingdom hCoV-19/England/LOND-D3D78/2020
 G1440A G2891A A3790G C4668T A6544G G11083T

EPI_ISL_449650
 2020-04-04 2020-05-19
 United Kingdom hCoV-19/England/LOND-D3D87/2020
 T1368C C6990T G11083T C14805T C23707T G26144T

EPI_ISL_449651
 2020-04-04 2020-05-19
 United Kingdom hCoV-19/England/LOND-D3D96/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_449652
 2020-04-04 2020-05-19
 United Kingdom hCoV-19/England/LOND-D3DA5/2020
 

EPI_ISL_449653
 2020-04-04 2020-05-19
 United Kingdom hCoV-19/England/LOND-D3DB4/2020
 C241T C2416T C3037T C14408T C14786T G20578T A23403G G25563T

EPI_ISL_449654
 2020-04-04 2020-05-19
 United Kingdom hCoV-19/England/LOND-D3DC3/2020
 C241T C1427T C3037T G3419A C5806T C14408T A23403G GGG28881AAC

EPI_ISL_449655
 2020-04-04 2020-05-19
 United Kingdom hCoV-19/England/LOND-D3DD2/2020
 C241T C3037T C9979T C14408T A19686G A23403G GGG28881AAC

EPI_ISL_449791
 2020-04-04 2020-05-19
 Norway hCoV-19/Norway/2386/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C14408T A17270G G17658T C23114T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_450173
 2020-04-04 2020-05-20
 United States hCoV-19/USA/LA-SR0318/2020
 C241T C1059T C3037T C5869T C14408T A23403G G25563T C27964T

EPI_ISL_450174
 2020-04-04 2020-05-20
 United States hCoV-19/USA/LA-SR0319/2020
 T10G C241T C1059T C3037T C14408T A23403G G25563T T26320C C27964T

EPI_ISL_450175
 2020-04-04 2020-05-20
 United States hCoV-19/USA/LA-SR0320/2020
 C241T GTCATGTTA510- C1059T C3037T G3969A C10319T G11083T G14186A C14408T A23403G G25563T C27964T

EPI_ISL_450181
 2020-04-04 2020-05-20
 United States hCoV-19/USA/LA-SR0328/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T

EPI_ISL_450182
 2020-04-04 2020-05-20
 United States hCoV-19/USA/LA-SR0329/2020
 C241T C1059T C3037T T6394C C10319T C14408T C16859T A23403G G25563T C27964T

EPI_ISL_450184
 2020-04-04 2020-05-20
 United States hCoV-19/USA/LA-SR0331/2020
 C241T C1059T C3037T C10319T C14408T G16622A A23403G G25563T C27964T

EPI_ISL_450185
 2020-04-04 2020-05-20
 United States hCoV-19/USA/LA-SR0332/2020
 C241T C1059T C3037T C14408T C19955G A23403G G25563T C27964T

EPI_ISL_450321
 2020-04-04 2020-05-20
 India hCoV-19/India/CCMB_NIV1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C1812T A6081G C6312A G11083T C13730T C23929T C28311T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_450322
 2020-04-04 2020-05-20
 India hCoV-19/India/CCMB_NIV2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C6312A G11083T C13730T C19524T C23929T C28311T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_452810 MT558661
 2020-04-04 2020-05-27
 United States SARS-CoV-2/human/USA/VA-DCLS-0233/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_453979
 2020-04-04 2020-05-28
 Portugal hCoV-19/Portugal/PT0265/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3140T C14408T A23403G G24077T C29555T CGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29750-

EPI_ISL_453981
 2020-04-04 2020-05-28
 Portugal hCoV-19/Portugal/PT0267/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAA1- C241T C3037T G8762A C14408T A23403G ATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29684-

EPI_ISL_453982
 2020-04-04 2020-05-28
 Portugal hCoV-19/Portugal/PT0268/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T C15324T A23403G C26058T A29246G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454387
 2020-04-04 2020-05-28
 United States hCoV-19/USA/PA-MGEL110/2020
 T490A C3177T C8782T C11109T C16178T T18736C G21123T C24034T T26729C G28077C T28144C A29700G GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_454547
 2020-04-04 2020-05-28
 India hCoV-19/India/NIV-7044/2020
 C6310A C6312A G11083T C13730T C19524T C23929T C28311T A29827T G29830T

EPI_ISL_454779
 2020-04-04 2020-05-29
 Netherlands hCoV-19/Netherlands/Utrecht_10030/2020
 A1- C241T C3037T C14408T T22020C A23403G C27046T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_454780
 2020-04-04 2020-05-29
 Netherlands hCoV-19/Netherlands/Utrecht_10031/2020
 ATTAAAG1- C241T C3037T C14408T C20148T G23383A A23403G G29422T TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_454781
 2020-04-04 2020-05-29
 Netherlands hCoV-19/Netherlands/Utrecht_10032/2020
 ATTAAA1- G1440A G2891A C10138T C20457T T27483C G28378T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_455142
 2020-04-04 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_337/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T TGGTCATGTTATGGT508- C3037T G12550A C14408T G20238T A20268G C20740A A23403G G26501T G29734C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455144
 2020-04-04 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_339/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T19584C A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455146
 2020-04-04 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_341/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T TGGTCATGTTATGGT508- C3037T G12550A C14408T G20238T A20268G C20740A A23403G G26501T G29734C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455148
 2020-04-04 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_343/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T19584C A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455291
 2020-04-04 2020-05-29
 Netherlands hCoV-19/Netherlands/NoordBrabant_107/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C11704T C14408T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455296
 2020-04-04 2020-05-29
 Netherlands hCoV-19/Netherlands/ZuidHolland_107/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2113T C3037T C7765T C14408T C17690T T18488C T18567C C18877T A19257G C19586T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455621 MT536188
 2020-04-04 2020-05-29
 United States SARS-CoV-2/human/USA/LA-BIE-068/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCT1- C241T C1059T T1066C C3037T A3503G C10319T C14408T A23403G G25563T A27690T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_455775
 2020-04-04 2020-06-01
 India hCoV-19/India/RMRC24/2020
 C241T C3037T C14408T C18877T A23403G G25563T C26735T TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_455776
 2020-04-04 2020-06-01
 India hCoV-19/India/RMRC27/2020
 C241T C3037T T6868C C14408T C18877T A23403G T24045C G25563T C26735T GTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29690-

EPI_ISL_455777
 2020-04-04 2020-06-01
 India hCoV-19/India/RMRC28/2020
 C241T C3037T C14408T C18877T A23403G G25563T C26735T TGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29689-

EPI_ISL_455778
 2020-04-04 2020-06-01
 India hCoV-19/India/RMRC30/2020
 C241T C3037T C14408T C18877T A23403G G25563T C26735T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_455779
 2020-04-04 2020-06-01
 India hCoV-19/India/RMRC38/2020
 C241T C3037T C14408T C18877T A23403G G25563T C26735T AATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29814-

EPI_ISL_456315
 2020-04-04 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1936/2020
 C241T C1059T C14408T T28144C

EPI_ISL_456317
 2020-04-04 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1941/2020
 C241T C1059T C3037T C14408T C16260T A23403G G25563T C28821A

EPI_ISL_456355
 2020-04-04 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR2063/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_456910
 2020-04-04 2020-06-02
 United Kingdom hCoV-19/Scotland/EDB3058/2020
 C241T C676T C3037T C9223T C14408T A23403G

EPI_ISL_456911
 2020-04-04 2020-06-02
 United Kingdom hCoV-19/Scotland/EDB3062/2020
 C241T C3037T C9223T C14408T A23403G

EPI_ISL_457021
 2020-04-04 2020-06-02
 United Kingdom hCoV-19/Scotland/EDB890/2020
 C241T C1267T C3037T C14408T A23403G C25433T

EPI_ISL_457031
 2020-04-04 2020-06-02
 United Kingdom hCoV-19/England/EXET-1350E3/2020
 C241T C3037T C6903T A13456G C14408T A23403G GGG28881AAC

EPI_ISL_457035
 2020-04-04 2020-06-02
 United Kingdom hCoV-19/England/EXET-1351FF/2020
 C241T C3037T C6903T A13456G C14408T A23403G GGG28881AAC

EPI_ISL_457036
 2020-04-04 2020-06-02
 United Kingdom hCoV-19/England/EXET-13520B/2020
 C241T C3037T C6903T A13456G C14408T A23403G GGG28881AAC

EPI_ISL_457037
 2020-04-04 2020-06-02
 United Kingdom hCoV-19/England/EXET-13521A/2020
 C241T ACGGCGCCGATC672- C3037T A13456G C14408T A23403G GGG28881AAC

EPI_ISL_457038
 2020-04-04 2020-06-02
 United Kingdom hCoV-19/England/EXET-135238/2020
 C241T C3037T C6903T A13456G C14408T A23403G GGG28881AAC

EPI_ISL_457040
 2020-04-04 2020-06-02
 United Kingdom hCoV-19/England/EXET-135265/2020
 C241T C1059T C3037T C14408T C22295T A23403G G24368T G25563T

EPI_ISL_457041
 2020-04-04 2020-06-02
 United Kingdom hCoV-19/England/EXET-135274/2020
 C241T C3037T A13456G C14408T A23403G GGG28881AAC

EPI_ISL_457042
 2020-04-04 2020-06-02
 United Kingdom hCoV-19/England/EXET-135292/2020
 C241T ACGGCGCCGATC672- C3037T A13456G C14408T A23403G GGG28881AAC

EPI_ISL_457043
 2020-04-04 2020-06-02
 United Kingdom hCoV-19/England/EXET-1352A1/2020
 C241T C3037T C6903T A13456G C14408T A23403G GGG28881AAC

EPI_ISL_457044
 2020-04-04 2020-06-02
 United Kingdom hCoV-19/England/EXET-1352B0/2020
 C241T C3037T C6903T A13456G C14408T A23403G GGG28881AAC

EPI_ISL_457046
 2020-04-04 2020-06-02
 United Kingdom hCoV-19/England/EXET-1352ED/2020
 C241T ACGGCGCCGATC672- C3037T A13456G C14408T A23403G GGG28881AAC

EPI_ISL_457131
 2020-04-04 2020-06-02
 United Kingdom hCoV-19/England/EXET-135A8B/2020
 C241T C3037T C6903T A13456G C14408T A23403G GGG28881AAC

EPI_ISL_457145
 2020-04-04 2020-06-02
 United Kingdom hCoV-19/England/EXET-135BE2/2020
 C241T C2919T C3037T A13456G C14408T A23403G GGG28881AAC

EPI_ISL_457155
 2020-04-04 2020-06-02
 United Kingdom hCoV-19/England/EXET-135CD0/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_457875
 2020-04-04 2020-06-02
 Kenya hCoV-19/Kenya/P230/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T G11230T C12213T T28144C G28167A G28878A G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458270
 2020-04-04 2020-06-04
 United States hCoV-19/USA/CA-SR0395/2020
 C241T C1059T C1887T C3037T C14408T T16993C A23403G G25563T

EPI_ISL_460099 MT520174
 2020-04-04 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00461/2020
 ATTAAA1- C241T C1059T C3037T G3892T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAA29884-

EPI_ISL_460159 MT520234
 2020-04-04 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00467/2020
 ATTAAAGGTTTATACCTTCCC1- C241T C1059T C3037T G3892T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_460165 MT520240
 2020-04-04 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00666/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C2416T C3037T T8665G C14408T G21824T A23403G G25311T G25563T G26233T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_460168 MT520243
 2020-04-04 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00471/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C1059T C3037T G3892T C14408T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_460176 MT520251
 2020-04-04 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00466/2020
 ATTAAAG1- C241T C1059T C3037T G3892T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_460177 MT520252
 2020-04-04 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00464/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C1059T C3037T G3892T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_460190 MT520265
 2020-04-04 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00669/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C2416T C3037T C8090T G10631T C14408T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460201 MT520276
 2020-04-04 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00473/2020
 ATTAAA1- C241T C1059T C3037T G3892T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_460208 MT520283
 2020-04-04 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00477/2020
 ATTAAAGGT1- C241T C1059T C3037T G3892T C14408T C21575T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_460223 MT520298
 2020-04-04 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00454/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C1059T C3037T G3892T C14408T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460225 MT520300
 2020-04-04 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00475/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C1059T C3037T G3892T C14408T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460226 MT520301
 2020-04-04 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00469/2020
 ATTAAAGGTTTATACCTTC1- C241T C1059T C3037T G3892T C14408T C21658T A23403G G25563T C28391T AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_460227 MT520302
 2020-04-04 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00480/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C1059T C3037T G3892T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_460230 MT520305
 2020-04-04 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00474/2020
 ATTAAAGGTTTAT1- C241T C1059T G1868A C3037T G3892T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_460244 MT520319
 2020-04-04 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00463/2020
 ATTAAAG1- C241T C1059T C3037T G3892T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_460272 MT520347
 2020-04-04 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00458/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C1059T C3037T G3892T C14408T A23403G G25563T G26787A AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460284 MT520359
 2020-04-04 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00453/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C1059T C3037T G3892T C14408T C21575T A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_460296 MT520371
 2020-04-04 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00668/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C2416T C3037T C14408T A23403G G25563T G26233T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_460307 MT520382
 2020-04-04 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00664/2020
 ATTAAA1- C241T T833C C1059T C3037T C14408T C16616T A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_460328 MT520403
 2020-04-04 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00665/2020
 ATTAAAGG1- C241T C3037T C14408T A23403G C28603T G28899T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_460351 MT520426
 2020-04-04 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00318/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T G3892T C14408T C21575T A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_460356 MT520431
 2020-04-04 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00670/2020
 ATTAAAGGTTTATACCTTCCCAG1- G105T C241T C3037T C4543T C14408T C18877T A23403G G25563T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_460361 MT520436
 2020-04-04 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00472/2020
 ATTAAA1- C241T C1059T C3037T G3892T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_460383 MT520458
 2020-04-04 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00456/2020
 ATTAAA1- C241T C1059T C3037T G3892T C7926T C14408T T15648C C21575T A23403G G25563T C26916T AAAAA29899-

EPI_ISL_460385 MT520460
 2020-04-04 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00468/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C1059T C3037T G3892T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_460390 MT520465
 2020-04-04 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00465/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C1059T C3037T G3892T C14408T A23403G G25563T GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_460392 MT520467
 2020-04-04 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00479/2020
 ATTAAAG1- C241T C1059T C3037T G3892T C14408T C21575T A23403G G25563T AAAAAA29898-

EPI_ISL_460420 MT520495
 2020-04-04 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00476/2020
 ATTAAA1- C241T C1059T C3037T G3892T C14408T C21658G A23403G G25563T AAAAAAAAAAAAAAAAAAAAAA29882-

EPI_ISL_460441 MT520516
 2020-04-04 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00481/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C1059T C3037T G3892T C14408T A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_460454 MT520529
 2020-04-04 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00459/2020
 ATTAAAGGTTTATACCTTCCC1- C241T C1059T C3037T G3892T C14408T A18057G A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_460636
 2020-04-04 2020-06-06
 Netherlands hCoV-19/Netherlands/Drenthe_2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G9267A G12550A C14408T A20268G C20740A A23403G G26501T G29734C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_463279 MT585084
 2020-04-04 2020-06-10
 United States SARS-CoV-2/human/USA/LA-BIE-031/2020
 C241T C1059T C3037T C8880T C10188T C14408T A23403G T24982C G25563T C27964T

EPI_ISL_463282 MT585087
 2020-04-04 2020-06-10
 United States SARS-CoV-2/human/USA/LA-BIE-034/2020
 C241T C1059T C3037T C10319T C14408T A15442C G19086T A23403G G25563T C27964T

EPI_ISL_463283 MT585088
 2020-04-04 2020-06-10
 United States SARS-CoV-2/human/USA/LA-BIE-035/2020
 C241T C1059T C3037T C9286T C14408T T17886C A23403G G25563T C27964T

EPI_ISL_463285 MT585090
 2020-04-04 2020-06-10
 United States SARS-CoV-2/human/USA/LA-BIE-037/2020
 C241T C1059T C3037T A5958T C10319T A11268G C14408T A23403G G25563T C27964T

EPI_ISL_463286 MT585091
 2020-04-04 2020-06-10
 United States SARS-CoV-2/human/USA/LA-BIE-038/2020
 C241T C1059T C3037T C10319T C14408T A23403G G25563T C27964T

EPI_ISL_463287 MT585092
 2020-04-04 2020-06-10
 United States SARS-CoV-2/human/USA/LA-BIE-039/2020
 C241T C1059T C1758T C3037T C10319T C13168T C14408T A23403G G25563T G25907T C27964T

EPI_ISL_463295 MT585100
 2020-04-04 2020-06-10
 United States SARS-CoV-2/human/USA/LA-BIE-047/2020
 C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T

EPI_ISL_463298 MT585103
 2020-04-04 2020-06-10
 United States SARS-CoV-2/human/USA/LA-BIE-050/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T

EPI_ISL_463903
 2020-04-04 2020-06-11
 Canada hCoV-19/Canada/QC_AC4/2020
 C241T C3037T C14408T C15324T C19255T A23403G C25433T CATAAACCTCATAATTAAAAATTTATCTAAGTCACTAACTGAGAATAAATATTCTCAATTAGATGAAGAGCAAC27297-

EPI_ISL_463931
 2020-04-04 2020-06-11
 Canada hCoV-19/Canada/QC_AR3/2020
 C241T C3037T C14408T C15324T A23403G C25433T

EPI_ISL_463943
 2020-04-04 2020-06-11
 Canada hCoV-19/Canada/QC_AT8/2020
 C241T C1059T C1150T C1223T C3037T C4886T C14408T G14829T A23403G A24782G G25563T G27561T C27964T

EPI_ISL_463947
 2020-04-04 2020-06-11
 Canada hCoV-19/Canada/QC_AU8/2020
 C241T C1059T G1126T C3037T C4784T C11916T C14408T C18998T G21786A A23403G G25563T G29540A

EPI_ISL_464070
 2020-04-04 2020-06-11
 Belgium hCoV-19/Belgium/CK-0404276/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C14599T C15324T T20295C A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_464071
 2020-04-04 2020-06-11
 Belgium hCoV-19/Belgium/TVMT-0404277/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4320T C13225T C14134T C14408T A23403G G25563T C25688T G28655T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_466107
 2020-04-04 2020-06-11
 United Kingdom hCoV-19/England/20149005204/2020
 C241T C3037T C14408T A23403G C27923T GGG28881AAC

EPI_ISL_466206
 2020-04-04 2020-06-11
 United Kingdom hCoV-19/England/20149052404/2020
 C241T C3037T T9721Y C14408T T22325C A23403G C25350T C28657T

EPI_ISL_466207
 2020-04-04 2020-06-11
 United Kingdom hCoV-19/England/20149052604/2020
 C241T C3037T G4285T A10948G C14408T A23403G C27542T GGG28881AAC

EPI_ISL_466213
 2020-04-04 2020-06-11
 United Kingdom hCoV-19/England/20149054104/2020
 C241T C3037T C8025T C14408T A20268G A23403G G29734C

EPI_ISL_466217
 2020-04-04 2020-06-11
 United Kingdom hCoV-19/England/20149054504/2020
 C241T C3037T C14408T C18568T A23403G C25831T GGG28881AAC

EPI_ISL_467445
 2020-04-04 2020-06-14
 South Africa hCoV-19/South Africa/KRISP-0056/2020
 C241T T856A A1819C C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_467468
 2020-04-04 2020-06-14
 South Africa hCoV-19/South Africa/KRISP-0115/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C3037T C14408T A23403G GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_467663
 2020-04-04 2020-06-14
 United States hCoV-19/USA/NM-UNM-00168/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_468534 MT628257
 2020-04-04 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1605/2020
 AT1- C4776T C8782T C17104T C17747T A17858G C18060T G28086K T28144C

EPI_ISL_468717
 2020-04-04 2020-06-17
 United States hCoV-19/USA/LA-BIE-028/2020
 C241T C1059T C3037T C5869T C14408T A23403G G25563T C26333T C27964T

EPI_ISL_468761
 2020-04-04 2020-06-17
 Spain hCoV-19/Spain/Logrono_h2361/2020
 C8782T C8980T T9477A C14805T G25979T G26262A T28144C C28657T C28863T

EPI_ISL_471224
 2020-04-04 2020-06-19
 United States hCoV-19/USA/WI-WSLH-200059/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471241
 2020-04-04 2020-06-19
 United States hCoV-19/USA/WI-WSLH-200076/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T C26625T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471248
 2020-04-04 2020-06-19
 United States hCoV-19/USA/WI-WSLH-200084/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G T27299C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471543
 2020-04-04 2020-06-22
 Brazil hCoV-19/Brazil/SP-131/2020
 A187G C241T C3037T G11417T C14408T A23403G AAAAAAAAAAAAA29891-

EPI_ISL_472255
 2020-04-04 2020-06-23
 United Kingdom hCoV-19/England/NORT-283DEE/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_474892
 2020-04-04 2020-06-23
 Spain hCoV-19/Spain/Granada-COV003020/2020
 C241T C3037T T9596Y C14408T C18377Y G18412K A20268G A23403G C24964Y C27493S G27777T G29449T C29870A

EPI_ISL_475120
 2020-04-04 2020-06-23
 Sweden hCoV-19/Sweden/20-08801/2020
 C241T C1059T C3037T T10288A C14408T A23403G G24368T G25563T A26226G

EPI_ISL_475593
 2020-04-04 2020-06-23
 United States hCoV-19/USA/CA-CSMC117/2020
 C241T C379A C3037T C11490G T14138C C14408T A18147G T20733C A23403G G25563T C29774T

EPI_ISL_475697
 2020-04-04 2020-06-23
 United States hCoV-19/USA/CA-CSMC81/2020
 C241T C3037T C8917T C14408T C18877T A23403G G25563T

EPI_ISL_475701
 2020-04-04 2020-06-23
 United States hCoV-19/USA/CA-CSMC85/2020
 C241T C3037T A4229C C7979T G8102A C13026G C13730T C14408T T18495C T21968G A23403G G25563T G26718C

EPI_ISL_475702
 2020-04-04 2020-06-23
 United States hCoV-19/USA/CA-CSMC86/2020
 C241T C3037T C6541T C14408T A23403G T25430C GGG28881AAC

EPI_ISL_476501
 2020-04-04 2020-06-25
 Canada hCoV-19/Canada/QC_AD7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G C25433T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476825
 2020-04-04 2020-06-26
 Benin hCoV-19/Benin/1408/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T4463Y T13006C C14408T A23403G C24382Y G25563T C25688T TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_478524
 2020-04-04 2020-06-30
 United Kingdom hCoV-19/England/NORT-283ECD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G27996T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478530
 2020-04-04 2020-06-30
 United Kingdom hCoV-19/England/NORT-283F8E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T C23758T C27970T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478658
 2020-04-04 2020-06-30
 United Kingdom hCoV-19/England/NORT-295C19/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C19803T A23403G C26499T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478661
 2020-04-04 2020-06-30
 United Kingdom hCoV-19/England/NORT-295C46/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C225T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479572
 2020-04-04 2020-06-30
 India hCoV-19/India/NIV-SARI-4375/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- A6081G C13730T G17425T C28311T GGG28881AAC G29262T A29815T AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_480092
 2020-04-04 2020-07-01
 Japan hCoV-19/Japan/PG-0424/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C3037T C14408T G16221T A17829T A23403G A26530G ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480093
 2020-04-04 2020-07-01
 Japan hCoV-19/Japan/PG-0425/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C3037T C14408T A20268G A23403G ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480094
 2020-04-04 2020-07-01
 Japan hCoV-19/Japan/PG-0426/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C13430T C14408T A23403G GGG28881AAC G29764T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480144
 2020-04-04 2020-07-01
 Japan hCoV-19/Japan/PG-0485/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C313T C3037T C14408T C20759T A23403G GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_480145
 2020-04-04 2020-07-01
 Japan hCoV-19/Japan/PG-0486/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T G11083T C14408T A23403G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_480146
 2020-04-04 2020-07-01
 Japan hCoV-19/Japan/PG-0487/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T G1306T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480160
 2020-04-04 2020-07-01
 Japan hCoV-19/Japan/PG-0501/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T G11083T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480161
 2020-04-04 2020-07-01
 Japan hCoV-19/Japan/PG-0502/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C6268T C14408T A23403G G25879T GTT26155- GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480162
 2020-04-04 2020-07-01
 Japan hCoV-19/Japan/PG-0503/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGAT1- C241T C313T C3037T C14408T A23403G GGG28881AAC TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_480184
 2020-04-04 2020-07-01
 Japan hCoV-19/Japan/PG-0526/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T G1738T C3037T C14408T G16221T A17829T A23403G A26530G TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_480188
 2020-04-04 2020-07-01
 Japan hCoV-19/Japan/PG-0530/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480223
 2020-04-04 2020-07-01
 Japan hCoV-19/Japan/PG-0591/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480394 MT772561
 2020-04-04 2020-07-01
 United States SARS-CoV-2/human/USA/WI-UW-412/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480822 MT703989
 2020-04-04 2020-07-02
 United States SARS-CoV-2/human/USA/FL-BPHL-0171/2020
 AT1- C241T C1059T C3037T C5884T C10207T C13487T C14408T C22858T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480823 MT703990
 2020-04-04 2020-07-02
 United States SARS-CoV-2/human/USA/FL-BPHL-0172/2020
 ATT1- C241T C1059T C3037T G12322A C14408T A23403G G25563T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480824 MT703991
 2020-04-04 2020-07-02
 United States SARS-CoV-2/human/USA/FL-BPHL-0173/2020
 AT1- G174A C241T C1059T C1917T C3037T T8278C C14408T C16997T A23403G G25563T TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_480825 MT703992
 2020-04-04 2020-07-02
 United States SARS-CoV-2/human/USA/FL-BPHL-0174/2020
 ATTA1- C241T C1059T C1917T C3037T C14408T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_480826 MT703993
 2020-04-04 2020-07-02
 United States SARS-CoV-2/human/USA/FL-BPHL-0175/2020
 AT1- C241T C1059T C3037T C14408T G15906T A16085G A23403G G25563T G27572A AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_480827 MT703994
 2020-04-04 2020-07-02
 United States SARS-CoV-2/human/USA/FL-BPHL-0176/2020
 ATTA1- C241T C3037T A13269C C14408T C15141T C15960T A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_480828 MT703995
 2020-04-04 2020-07-02
 United States SARS-CoV-2/human/USA/FL-BPHL-0177/2020
 A1- C241T C1059T C3037T T10852C C14408T G20002T G20102A A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_481252
 2020-04-04 2020-07-03
 Japan hCoV-19/Japan/NGS-IB-2/2020
 C241T C313T GTAGAAGTTGAAAAAGGCGTTTTGCCTCAACTT425- C823T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_481273 MT704127
 2020-04-04 2020-07-02
 United States SARS-CoV-2/human/USA/MD-MDH-0027/2020
 AT1- A2480G C2558T G11083T C14805T G22346T G26144T C28163T

EPI_ISL_481274 MT704128
 2020-04-04 2020-07-02
 United States SARS-CoV-2/human/USA/MD-MDH-0028/2020
 ATTAAAGGTTTATACCTTCCCAG1- A26T A2480G C2558T G11083T T12002G C14805T G22346T G26144T

EPI_ISL_481669
 2020-04-04 2020-07-03
 Finland hCoV-19/Finland/4A33S1/2020
 C241T C1059T C3037T T8158C C14408T C15540T A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481670
 2020-04-04 2020-07-03
 Finland hCoV-19/Finland/4A60S1/2020
 C241T C3037T C6401T C14408T C16952T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481671
 2020-04-04 2020-07-03
 Finland hCoV-19/Finland/4A70S1/2020
 C241T C1059T C3037T C10582T C13487T C14408T A23403G G24368T G25563T G28857C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481672
 2020-04-04 2020-07-03
 Finland hCoV-19/Finland/4A75S1/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481673
 2020-04-04 2020-07-03
 Finland hCoV-19/Finland/4A9S1/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T C28833T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_482295
 2020-04-04 2020-07-03
 United States hCoV-19/USA/OR-PROV-004/2020
 C241T C3037T C14408T C18747T A23403G GGG28881AAC

EPI_ISL_482453
 2020-04-04 2020-07-03
 United States hCoV-19/USA/OR-PROV-218/2020
 C241T C1059T C3037T C14408T A23403G G25563T C26907T

EPI_ISL_482673
 2020-04-04 2020-07-05
 Singapore hCoV-19/Singapore/372/2025
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6310A C6312A G11083T C13730T C19524T C23185T C23929T C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_483180
 2020-04-04 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0495-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C379A C1059T C3037T G4657A C14408T C15738T G21578T A23403G G25563T

EPI_ISL_483184
 2020-04-04 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0500-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C379A C1059T C3037T G4657A C14408T A20755G G21578T A23403G G25563T G29300T

EPI_ISL_483363
 2020-04-04 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0795-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C1059T C1887T C3037T C14408T A23403G G25563T T25842C

EPI_ISL_483390
 2020-04-04 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0834-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C379A C1059T C3037T G4657A C14408T A20755G G21578T A23403G G25563T G29300T

EPI_ISL_483605
 2020-04-04 2020-07-08
 Singapore hCoV-19/Singapore/582/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C1427T C6310A C6312A G11083T C13730T C19524T C23929T C26549T C28311T AAAAAAAAAAAA29892-

EPI_ISL_485279
 2020-04-04 2020-07-09
 United States hCoV-19/USA/LA-GBCL-26684458/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T A23403G G25563T G26031T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485283
 2020-04-04 2020-07-09
 United States hCoV-19/USA/LA-GBCL-26684462/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G1980A C3037T C9246T C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485298
 2020-04-04 2020-07-09
 United States hCoV-19/USA/LA-GBCL-26684485/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485365
 2020-04-04 2020-07-09
 United States hCoV-19/USA/LA-GBCL-26791750/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485380
 2020-04-04 2020-07-09
 United States hCoV-19/USA/LA-GBCL-26791770/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G1980A C3037T T8167A C14408T G22346A A23403G G25563T C27964T C29353T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485381
 2020-04-04 2020-07-09
 United States hCoV-19/USA/LA-GBCL-26791773/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485382
 2020-04-04 2020-07-09
 United States hCoV-19/USA/LA-GBCL-26791774/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A9058G C10319T C13119T C14408T A23403G G25563T G26690T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485383
 2020-04-04 2020-07-09
 United States hCoV-19/USA/LA-GBCL-26791776/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G1980A C3037T C14408T C14583T C16616T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485384
 2020-04-04 2020-07-09
 United States hCoV-19/USA/LA-GBCL-26791778/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1525C C3037T C10319T C14408T C19586A C21627T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487276 MT748758
 2020-04-04 2020-07-13
 Italy SARS-CoV-2/human/ITA/Milan-UNIMI-1/2020
 C241T TGGTCATGTTATGGT508- C3037T C14408T T16593C A16727G C18568T A23403G -25692TGA A26530G

EPI_ISL_487699
 2020-04-04 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3097/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3215G A12472G C14408T G15438T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487740
 2020-04-04 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3064/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16289T G19009T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487850
 2020-04-04 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5401/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2841T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487858
 2020-04-04 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB6300/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T A11772G C12119Y C14805T T17247C C18526Y G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487922
 2020-04-04 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3087/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T C22802M A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487962
 2020-04-04 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB6305/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1480A G11083T C14805T T16820C G26144T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487975
 2020-04-04 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3106/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7800T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487982
 2020-04-04 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5404/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G12070T C14408T T17126C A20268G G22335T A23403G A27578T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487983
 2020-04-04 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB6301/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C679Y G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488267
 2020-04-04 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12FB63/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488382
 2020-04-04 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12FB54/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488456
 2020-04-04 2020-07-14
 United Kingdom hCoV-19/England/NORT-283D0C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6843Y G10097A T13216G C14408T A19960G A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488468
 2020-04-04 2020-07-14
 United Kingdom hCoV-19/England/NORT-295C73/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T A2219G C3037T G11521T C14408T G21123T C23185T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488484
 2020-04-04 2020-07-14
 United Kingdom hCoV-19/England/NORT-283E36/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C2232Y G4300T G11083K C14805T A23403R C25350Y G26144K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488505
 2020-04-04 2020-07-14
 United Kingdom hCoV-19/England/NORT-283C87/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5079Y G10097A C14408T A23403G C23731T T25202K C25714T C27739T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488530
 2020-04-04 2020-07-14
 United Kingdom hCoV-19/England/NORT-295D34/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A10323G C14408T A23403G T25202K GGG28881AAC C29546T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488587
 2020-04-04 2020-07-14
 United Kingdom hCoV-19/England/NORT-283E54/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13862T C14408T A23403G T25202K C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488589
 2020-04-04 2020-07-14
 United Kingdom hCoV-19/England/NORT-283EDC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1912T C3037T C14408T A23403G GGG28881AAC G29227A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488590
 2020-04-04 2020-07-14
 United Kingdom hCoV-19/England/NORT-283E18/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C3912T C7423T C24054T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488612
 2020-04-04 2020-07-14
 United Kingdom hCoV-19/England/NORT-283D93/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G T25202K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488624
 2020-04-04 2020-07-14
 United Kingdom hCoV-19/England/NORT-283E09/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488637
 2020-04-04 2020-07-14
 United Kingdom hCoV-19/England/NORT-283DFD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G C9223T -11075TTT G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488641
 2020-04-04 2020-07-14
 United Kingdom hCoV-19/England/NORT-295D07/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C225T AG3046WR G11083T C14805T T25202K G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488648
 2020-04-04 2020-07-14
 United Kingdom hCoV-19/England/NORT-295C64/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C225T G11083T C14805T G26144T A28741G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488656
 2020-04-04 2020-07-14
 United Kingdom hCoV-19/England/NORT-295D16/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T A2219G C3037T G11521T C14408T G21123K C23185T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488661
 2020-04-04 2020-07-14
 United Kingdom hCoV-19/England/NORT-283DC0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T3909C G6373T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488685
 2020-04-04 2020-07-14
 United Kingdom hCoV-19/England/NORT-295CA0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A544G C854T G11083T C14805T T17247C G22708T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488690
 2020-04-04 2020-07-14
 United Kingdom hCoV-19/England/NORT-283D2A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20465R A23403G T25202K T27652C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488694
 2020-04-04 2020-07-14
 United Kingdom hCoV-19/England/NORT-283D1B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C2091T C4683T G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488722
 2020-04-04 2020-07-14
 United Kingdom hCoV-19/England/NORT-295D25/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T6691C G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488761
 2020-04-04 2020-07-14
 United Kingdom hCoV-19/England/NORT-283DA2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1912T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488836
 2020-04-04 2020-07-14
 United Kingdom hCoV-19/England/NORT-283DB1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3737T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488880
 2020-04-04 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3128/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3543T C14408T C16289T A23403G G23426T G25429T C27800T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488888
 2020-04-04 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3077/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G24368T G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488913
 2020-04-04 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3073/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488914
 2020-04-04 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3123/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7749Y C12400T C14408T A23403G G25537R CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488916
 2020-04-04 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3093/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488927
 2020-04-04 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3075/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7420T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488954
 2020-04-04 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3098/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2062T C3037T C9223T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488986
 2020-04-04 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3084/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6286T T7871Y C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489000
 2020-04-04 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3092/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T4693C C7334T C10798A C13862T C14408T A23403G T28297C C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489021
 2020-04-04 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3072/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4999T C13730T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489022
 2020-04-04 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3056/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489029
 2020-04-04 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3079/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489045
 2020-04-04 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3063/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491602
 2020-04-04 2020-07-17
 United Kingdom hCoV-19/Scotland/EDB931/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10712T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491604
 2020-04-04 2020-07-17
 United Kingdom hCoV-19/Scotland/EDB869/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5977C C14408T A20268G A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491923 MT776417
 2020-04-04 2020-07-17
 United States SARS-CoV-2/human/USA/VA_NIDDL_2929/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A T979C C3177T C6040T C8782T G12478A T18736C C24034T T26729C G28077C T28144C C28896G A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491924 MT776418
 2020-04-04 2020-07-17
 United States SARS-CoV-2/human/USA/VA_NIDDL_2932/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C10712T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492059
 2020-04-04 2020-07-18
 United States hCoV-19/USA/AK-PHL108/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1281T C3037T G5564A C14408T C19164T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492572
 2020-04-04 2020-07-20
 United Kingdom hCoV-19/England/BRIS-12FBFA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T A23403G C23731T G28436T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492580
 2020-04-04 2020-07-20
 United Kingdom hCoV-19/England/BRIS-12FC15/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492636
 2020-04-04 2020-07-20
 United Kingdom hCoV-19/England/BRIS-12FBCD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15237T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492738
 2020-04-04 2020-07-20
 United Kingdom hCoV-19/England/BRIS-12FBEB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G431A ATG1605- C20270T C24642G A29683T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492741
 2020-04-04 2020-07-20
 United Kingdom hCoV-19/England/BRIS-12FBBE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1459Y C3037T GACTATTGAAGT3328- A3490G G9224R G9414R C14408T G20275A A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493129 MT856680
 2020-04-04 2020-07-21
 United States SARS-CoV-2/human/USA/SC-USC-COM0003/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G8083T C14408T C16349T C21110T A23403G G25563T C27964T C28846T G29781C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_494377
 2020-04-04 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1125/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C751T C3037T C4540T G4904T G5206T C14408T A23403G C24138T C25350T

EPI_ISL_494381
 2020-04-04 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1130/2020
 C241T C3037T C4540T G4904T G5206T C14408T A23403G C24138T C25350T G29777T

EPI_ISL_494398
 2020-04-04 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1155/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C2700T C3037T C4540T G4904T G5206T C14408T A23403G C24138T C25350T

EPI_ISL_494402
 2020-04-04 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1159/2020
 ATTA1- C241T C3037T C4540T G4904T G5206T C14408T A23403G C24138T C25350T

EPI_ISL_494416
 2020-04-04 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1180/2020
 AT1- C241T C3037T C14408T A23403G C25350T C25566T

EPI_ISL_495601
 2020-04-04 2020-07-23
 United States hCoV-19/USA/MN-MDH-1302/2020
 ATTAA1- A38R A5595C C7488T C8782T C17747T A17858G C18060T A24694T C27970T T28144C G28812T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_495607
 2020-04-04 2020-07-23
 United States hCoV-19/USA/MN-MDH-1308/2020
 ATTAAA1- C8782T C16887T C17747T A17858G C18060T A24694T T28144C G28812T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_499336
 2020-04-04 2020-07-28
 United Kingdom hCoV-19/England/SHEF-C6473/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G7736A C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_499344
 2020-04-04 2020-07-28
 United Kingdom hCoV-19/England/SHEF-CBFC8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G22427A A23403G G27441T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501212
 2020-04-04 2020-07-31
 Malaysia hCoV-19/Malaysia/5425/2020
 ATTA1- C6312A T7621C G11083T C13730T C23929T C25549T C28311T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_506992
 2020-04-04 2020-08-02
 South Korea hCoV-19/Korea/KCDC2198/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C2416T C3037T G8371T C14408T C14688T A23403G G25563T

EPI_ISL_506993
 2020-04-04 2020-08-02
 South Korea hCoV-19/Korea/KCDC2199/2020
 ATTAA1- C241T C2416T C3037T G8371T C14408T C14688T A23403G G25563T

EPI_ISL_507165
 2020-04-04 2020-08-03
 United Kingdom hCoV-19/England/SHEF-C5B51/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_508821 MT834715
 2020-04-04 2020-08-04
 United States SARS-CoV-2/human/USA/FL-BPHL-0617/2020
 ATTAAAGGT1- T490A C3177T C6040T C8782T C8950T G12478A C16708G T18736C C24034T T26729C G28077C T28144C C28896G A29426C C29451T A29700G TATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29832-

EPI_ISL_508981
 2020-04-04 2020-08-04
 France hCoV-19/France/ARA19928/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTG1- C241T C2416T C3037T G8371T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_509076
 2020-04-04 2020-08-05
 United States hCoV-19/USA/OR-OHSU-0233/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11563T C14408T C18877T G20489T A23403G G25563T TGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29785-

EPI_ISL_509447 MT827209
 2020-04-04 2020-07-31
 United States SARS-CoV-2/human/USA/MD-MDH-0043/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C3037T C6267T C11916T C14408T C18998T A23403G G25563T G29540A AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_510500
 2020-04-04 2020-08-06
 Spain hCoV-19/Spain/COV004215/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C1059T C3037T T13006C C14408T G17302T A23403G G25563T C25688T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_510503
 2020-04-04 2020-08-06
 Spain hCoV-19/Spain/COV004219/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1551T C3037T C12781Y C14408T A20268G A23403G G25218T G29734C AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_510505
 2020-04-04 2020-08-06
 Spain hCoV-19/Spain/COV004222/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C3037T G6359A C14408T A20268G A23403G G25218T G29734C AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_510507
 2020-04-04 2020-08-06
 Spain hCoV-19/Spain/COV004225/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C3037T C14408T A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_510509
 2020-04-04 2020-08-06
 Spain hCoV-19/Spain/COV004227/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C3037T C14408T A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_511181
 2020-04-04 2020-08-07
 Portugal hCoV-19/Portugal/PT0924/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T A4853C C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_514480
 2020-04-04 2020-08-17
 United Kingdom hCoV-19/England/PORT-2D19FC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_515202
 2020-04-04 2020-08-18
 Canada hCoV-19/Canada/QC_AF7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1150T C3037T C4886T C14408T G14829T A23403G G25563T G27561T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_515226
 2020-04-04 2020-08-18
 Canada hCoV-19/Canada/QC_AR7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T C28717T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_515228
 2020-04-04 2020-08-18
 Canada hCoV-19/Canada/QC_AT4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G C25433T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516832
 2020-04-04 2020-08-24
 United Kingdom hCoV-19/England/LOND-1260986/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A11537G C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516834
 2020-04-04 2020-08-24
 United Kingdom hCoV-19/England/LOND-12608F2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11173T C14408T A21866G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516858
 2020-04-04 2020-08-24
 United Kingdom hCoV-19/England/LOND-12609D1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C11195T C13372Y C14408T C15216T C17762T A23403G G24740A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516866
 2020-04-04 2020-08-24
 United Kingdom hCoV-19/England/LOND-12609A4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11312A C14408T C18681T A23403G C25350T C28528T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_517513
 2020-04-04 2020-08-24
 United Kingdom hCoV-19/England/PORT-2D2B31/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C751T C3037T C14408T A23403G C25528T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_517772 MT966113
 2020-04-04 2020-08-24
 United States SARS-CoV-2/human/USA/FL-BPHL-0881/2020
 ATTA1- C241T GTTATG515- C2268T C3037T C14408T C18877T C21727T A23403G G25563T G27987T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_523957
 2020-04-04 2020-08-27
 Brazil hCoV-19/Brazil/SP-133/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T A6319G C6525T C7164T C14408T C14931T C19687T A23403G G25088T T26149C GGG28881AAC TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_524514
 2020-04-04 2020-08-28
 United Kingdom hCoV-19/Scotland/GCVR-173113/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- -11075TTN G11083T C14805T G26144T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524535
 2020-04-04 2020-08-28
 United Kingdom hCoV-19/Scotland/GCVR-1725BE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1884T C3037T C6730T C14408T A23403G T26497C G28001K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524562
 2020-04-04 2020-08-28
 United Kingdom hCoV-19/Scotland/GCVR-1730DA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C12710T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524642
 2020-04-04 2020-08-28
 United Kingdom hCoV-19/England/LOND-1260A74/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9438Y G9479K C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524680
 2020-04-04 2020-08-28
 United Kingdom hCoV-19/England/LOND-1260DA8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T1368C G5463T C6990T G11083T C14805T C16466Y C22075T C23707T G26144T C27920Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524686
 2020-04-04 2020-08-28
 United Kingdom hCoV-19/England/LOND-1260DB7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C12559T C14408T C14786T G20578T C23315T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524688
 2020-04-04 2020-08-28
 United Kingdom hCoV-19/England/LOND-1260FEE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T C6636T G7042T C7573T GT9623TA G11083T C14805T T18592C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524689
 2020-04-04 2020-08-28
 United Kingdom hCoV-19/England/LOND-1260EB4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T T3873C T6238Y C14408T C14786T G20578T A23403G G25563T C27610T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524694
 2020-04-04 2020-08-28
 United Kingdom hCoV-19/England/LOND-12613B4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C5986T G11083T G13627T C14805T C15540T G25302T G26144T A28338G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526471
 2020-04-04 2020-09-01
 United Kingdom hCoV-19/Scotland/EDB3080/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G G24821T C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_527039
 2020-04-04 2020-09-03
 Australia hCoV-19/Australia/NSW2536/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4540T G4904T G5206T C14408T A23403G C24138T C25350T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_527040
 2020-04-04 2020-09-03
 Australia hCoV-19/Australia/NSW2538/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4540T G4904T G5206T C14408T A23403G C24138T C25350T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_527041
 2020-04-04 2020-09-03
 Australia hCoV-19/Australia/NSW2539/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_527042
 2020-04-04 2020-09-03
 Australia hCoV-19/Australia/NSW2541/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_527043
 2020-04-04 2020-09-03
 Australia hCoV-19/Australia/NSW2542/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G20332A A23403G G24368T G25563T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_527044
 2020-04-04 2020-09-03
 Australia hCoV-19/Australia/NSW2543/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C583T C1059T C3037T C14408T G20332A A23403G G24368T G25563T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_527045
 2020-04-04 2020-09-03
 Australia hCoV-19/Australia/NSW2544/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T C28331T G29825T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_527046
 2020-04-04 2020-09-03
 Australia hCoV-19/Australia/NSW2545/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G11083T C14805T G26144T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_527047
 2020-04-04 2020-09-03
 Australia hCoV-19/Australia/NSW2546/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G11083T C14805T G26144T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_527048
 2020-04-04 2020-09-03
 Australia hCoV-19/Australia/NSW2547/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1850G C3037T C14408T A20268G A23403G C28854T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_527049
 2020-04-04 2020-09-03
 Australia hCoV-19/Australia/NSW2548/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4540T G4904T G5206T C14408T C19944T A23403G C24138T C25350T G29777T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_527050
 2020-04-04 2020-09-03
 Australia hCoV-19/Australia/NSW2549/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4540T G4904T G5206T C14408T A18009C A23403G C24138T C25350T C25658T G28001T C28831T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_527051
 2020-04-04 2020-09-03
 Australia hCoV-19/Australia/NSW2550/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10332T C14408T A23403G C25350T C25566T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_527052
 2020-04-04 2020-09-03
 Australia hCoV-19/Australia/NSW2551/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4540T G4904T G5206T C14408T G16912T A23403G C24138T C25350T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_529668
 2020-04-04 2020-09-10
 United Kingdom hCoV-19/England/PORT-2D2B6E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C25528T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530056
 2020-04-04 2020-09-10
 Spain hCoV-19/Spain/MD-LP53/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12970T C14408T A20268G A23403G C28333T ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_534863
 2020-04-04 2020-09-14
 United Kingdom hCoV-19/England/OXON-B350D/2020
 C241T C3037T T3055C C14408T A20796G A23403G G24038T GGG28881AAC

EPI_ISL_534880
 2020-04-04 2020-09-14
 United Kingdom hCoV-19/England/OXON-B36EC/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_534894
 2020-04-04 2020-09-14
 United Kingdom hCoV-19/England/OXON-B392F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTA1- T137K C6040T G11083T C14805T C23707T G26144T AAAAAAAAAA29894-

EPI_ISL_537469
 2020-04-04 2020-09-16
 United States hCoV-19/USA/CA-UCLA-105/2020
 ATTAAAGGTTTAT1- C241T C379A C1059T C3037T A14041G C14408T A23403G G25563T C29769T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_538156
 2020-04-04 2020-09-16
 Spain hCoV-19/Spain/AN-CSIC-98001786/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A2140G C3037T C14408T A20268G A23403G T28600C CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_538363
 2020-04-04 2020-09-16
 Canada hCoV-19/Canada/ON-OICR-SLB2842/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C2416T C3037T C14408T A23403G G25563T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_538364
 2020-04-04 2020-09-16
 Canada hCoV-19/Canada/ON-OICR-SLB2843/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2416T C3037T C14408T A23403G G25563T C25831T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_538367
 2020-04-04 2020-09-16
 Canada hCoV-19/Canada/ON-OICR-SLB2847/2020
 ATTAAAGGTTT1- C241T C2416T C3037T C14408T A23403G G25563T C25831T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_538368
 2020-04-04 2020-09-16
 Canada hCoV-19/Canada/ON-OICR-SLB2848/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C2416T C3037T C14408T A16395G A23403G G23593T G25563T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_538475
 2020-04-04 2020-09-17
 Singapore hCoV-19/Singapore/941/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6310A C6312A G11083T C13730T C19524T C23929T C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538476
 2020-04-04 2020-09-17
 Singapore hCoV-19/Singapore/942/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8730T C13730T C14408T A23403G G25429T C27416A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538477
 2020-04-04 2020-09-17
 Singapore hCoV-19/Singapore/943/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6312A C8139T G11083T C13730T C18647T C23929T C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538895
 2020-04-04 2020-09-17
 United Kingdom hCoV-19/England/LEED-2AA1D6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C2558T A9634T C10277T G11083T C14805T C17104T G26144T G28851T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539027
 2020-04-04 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8F38/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C2558T G11083T C14805T G18391T G26144T G28851T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539044
 2020-04-04 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8ADD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G613T G1440A C1959T C2842T G2891A C10507T G29468C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539074
 2020-04-04 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8B52/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1191T ATG1605- C11674T T13090C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539075
 2020-04-04 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8F83/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12493T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539082
 2020-04-04 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8BF8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T C14408T A20268G C22295T A23403G G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539102
 2020-04-04 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9016/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3619T C14408T C19170T G19509A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539104
 2020-04-04 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9043/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539107
 2020-04-04 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8F92/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1912T C3037T C13430T C14408T G19117T A23403G G28079A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539110
 2020-04-04 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A88F1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1195C C1218Y C3037T C14408T A23403G C27679Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539115
 2020-04-04 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8C22/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14184Y C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539123
 2020-04-04 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8D5C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C14408T A20268G A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539133
 2020-04-04 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8FA1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9634T G9928A C14408T A20268G A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539142
 2020-04-04 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8F0B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13730T C14408T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539218
 2020-04-04 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8DF2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A25174M G25567R GGG28881AAC C29545Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540217
 2020-04-04 2020-09-21
 United Kingdom hCoV-19/Wales/QEUH-9A4506/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C829T C1960T C3037T C5301T C5907T C7948T C9430Y C13247T C14408T C14937T A15945G T18144C A23403G C26681T C28011T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541349
 2020-04-04 2020-09-22
 Brazil hCoV-19/Brazil/RJ-1830/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C9940T C14408T A23403G G25437T T27299C GGG28881AAC T29148C GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_541350
 2020-04-04 2020-09-22
 Brazil hCoV-19/Brazil/RJ-1862/2020
 ATTAAAGGTTTA1- C241T C1670Y C3037T C14408T A16205W A23403G T24163A T27299C GGG28881AAC T29148C GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_541870
 2020-04-04 2020-09-23
 Lithuania hCoV-19/Lithuania/MR-LUHS-Eilnr7/2020
 A1- C241T C3037T C13694T C14408T A23403G C28310T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_543786
 2020-04-04 2020-09-23
 United States hCoV-19/USA/TX-HMH-466/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A18082G T19378C A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544243
 2020-04-04 2020-09-24
 United States hCoV-19/USA/TX-HMH-467/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A18082G T19378C A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544251
 2020-04-04 2020-09-24
 United States hCoV-19/USA/TX-HMH-468/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A18082G A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544259
 2020-04-04 2020-09-24
 United States hCoV-19/USA/TX-HMH-469/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G17808T A23403G G25563T T27384C C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544268
 2020-04-04 2020-09-24
 United States hCoV-19/USA/TX-HMH-470/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544285
 2020-04-04 2020-09-24
 United States hCoV-19/USA/TX-HMH-472/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C5672T C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544296
 2020-04-04 2020-09-24
 United States hCoV-19/USA/TX-HMH-474/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C6040T C6401T C6843T C8782T C8950T G12478A T18736C C24034T T26729C G28077C T28144C C28896G C29451T A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544311
 2020-04-04 2020-09-24
 United States hCoV-19/USA/TX-HMH-476/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544604
 2020-04-04 2020-09-24
 United States hCoV-19/USA/TX-HMH-522/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C5628T C10319T C14408T C21575T A23403G G25563T G25641T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545659
 2020-04-04 2020-09-24
 United States hCoV-19/USA/TX-HMH-784/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T G22344T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545877
 2020-04-04 2020-09-24
 United States hCoV-19/USA/TX-HMH-860/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6616G A10691G C14408T G15243T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545911
 2020-04-04 2020-09-24
 United States hCoV-19/USA/TX-HMH-909/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G9473A A12785G C14408T A23403G G25563T C28909T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546719
 2020-04-04 2020-09-24
 United States hCoV-19/USA/TX-HMH-738/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G2331A C3037T C10319T C14408T C22264T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547536
 2020-04-04 2020-09-24
 Netherlands hCoV-19/Netherlands/UT-RIVM-10134/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T22020C A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547537
 2020-04-04 2020-09-24
 Netherlands hCoV-19/Netherlands/UT-RIVM-10135/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A C10138T C20457T T27483C G28378T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560753
 2020-04-04 2020-09-29
 United States hCoV-19/USA/MN-MDH-1666/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C8782T C17747T A17858G C18060T A24694T T28144C G28812T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_560754
 2020-04-04 2020-09-29
 United States hCoV-19/USA/MN-MDH-1667/2020
 ATTA1- C241T C1059T C3037T C14408T C22523M A23403G G25563T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_560755
 2020-04-04 2020-09-29
 United States hCoV-19/USA/MN-MDH-1668/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- A2480G C2558T C10908T G11083T C14805T G26144T A27169G CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_560762
 2020-04-04 2020-09-29
 United States hCoV-19/USA/MN-MDH-1675/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C5878T G10870T C14408T A23403G G25563T A25859G C29149T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_569523
 2020-04-04 2020-10-02
 France hCoV-19/France/IHU-0457/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1059T C3037T C3784T C5055T G11083T C14408T C16376T G19729A A23403G G24535T G25563T CGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29743-

MT459847
 2020-04-04 2020-05-11
 Greece SARS-CoV-2/human/GRC/53_38017/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- GTTATG515- A2480G C2558T C9491T G11083T C14805T G26144T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

MT477851
 2020-04-04 2020-05-14
 United States SARS-CoV-2/human/USA/AK101/2020
 ATTAAAGGTTTAT1- C241T C1059T C3037T C14408T C16457T A23403G G25523T G25563T T27869C GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

MT627748
 2020-04-04 2020-06-16
 United States SARS-CoV-2/human/USA/WA-S592/2020
 ATTAAAG1- C241T C1059T C3037T C5717T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

MT627751
 2020-04-04 2020-06-16
 United States SARS-CoV-2/human/USA/WA-S590/2020
 ATTAAAGGTTTAT1- C5784T C8782T C17747T A17858G C18060T G24794T G26730A T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

MT627759
 2020-04-04 2020-06-16
 United States SARS-CoV-2/human/USA/WA-S591/2020
 ATTAAAGG1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

MT627761
 2020-04-04 2020-06-16
 United States SARS-CoV-2/human/USA/WA-S589/2020
 ATTAAAGGTTTAT1- C241T C1059T C3037T C5717T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

MT704310
 2020-04-04 2020-07-02
 United States SARS-CoV-2/Panthera leo/USA/lion-2-041520/2020
 C7843T C8266T G9441R G11083T A13768G C14805T A15869T T17247C C17639T C18171T A23400G G23429A G26144T C28915T GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

MT704311
 2020-04-04 2020-07-02
 United States SARS-CoV-2/Panthera leo/USA/lion-3-041520/2020
 ATT1- T65Y A1953R G3761R C7392Y C7843T C8266T G11083T A13768G C14805T A15869T T17247C C17639T C18171T T23075C GC23429AT G26144T C28915T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

MT704312
 2020-04-04 2020-07-02
 United States SARS-CoV-2/Panthera leo/USA/lion-041520/2020
 ATTAAAG1- C7392T C7843T C8266T G11083T A13768G C14805T A15869T T17247C C17639T C18171T T23075C GC23429AT G26144T C28915T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

MT704313
 2020-04-04 2020-07-02
 United States SARS-CoV-2/Panthera tigris/USA/tiger-2-040420/2020
 C241T C1059T C2710Y C3037T C14408T G23049R A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

MT704314
 2020-04-04 2020-07-02
 United States SARS-CoV-2/Panthera tigris/USA/P3_fecal_Vero/2020
 C241T C1059T C3037T C10615T C14408T A21759G G22343C T22929A A23403G G25563T C28291T AAAAAAAAAAAAAAAAAAAAA29883-

MT704315
 2020-04-04 2020-07-02
 United States SARS-CoV-2/Panthera tigris/USA/tiger-3-040420/2020
 ATTAA1- C241T C1059T C3037T C10615Y C14408T G15451R T22929W G23049R A23403G G25563T ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

MT704316
 2020-04-04 2020-07-02
 United States SARS-CoV-2/Panthera tigris/USA/tiger-4-040420/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T T23027Y G23049R A23403G C23709Y G25563T C29837M AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

MT706213
 2020-04-04 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-93/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4755T C14408T G15760A A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706224
 2020-04-04 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-104/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C125T C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT747978
 2020-04-04 2020-07-13
 United States SARS-CoV-2/Panthera leo/USA/lion-2_Fecal_isolate/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C7843T C8266T G11083T A13768G C14805T A15869T T17247C C17639T C18171T A23400G G23429A G26144T C28915T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

MT810604
 2020-04-04 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1125-CS2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C751T C3037T C4540T G4904T G5206T C14408T A23403G C24138T C25350T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810608
 2020-04-04 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1130-CS2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C4540T G4904T G5206T C14408T A23403G C24138T C25350T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810625
 2020-04-04 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1155-CS2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C2700T C3037T C4540T G4904T G5206T C14408T A23403G C24138T C25350T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810629
 2020-04-04 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1159-CS2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C4540T G4904T G5206T C14408T A23403G C24138T C25350T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810643
 2020-04-04 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1180-CS2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A23403G C25350T C25566T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811006
 2020-04-04 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0395-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C1887T C3037T C14408T T16993C A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811198
 2020-04-04 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0495-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C379A C1059T C3037T G4657A C14408T C15738T G21578T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811202
 2020-04-04 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0500-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C379A C1059T C3037T G4657A C14408T A20755G G21578T A23403G G25563T G29300T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811375
 2020-04-04 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0795-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C1887T C3037T C14408T A23403G G25563T T25842C CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811401
 2020-04-04 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0834-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C379A C1059T C3037T G4657A C14408T A20755G G21578T A23403G G25563T G29300T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811682
 2020-04-04 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0169-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T A23403G C24034T G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811686
 2020-04-04 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0174-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- GTCATGTTA510- C1059T C3037T G3969A C10319T G11083T G14186A C14408T A23403G G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811740
 2020-04-04 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0318-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C5869T C14408T A23403G G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811741
 2020-04-04 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0319-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T A23403G G25563T T26320C C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811742
 2020-04-04 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0320-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- GTCATGTTA510- C1059T C3037T G3969A C10319T G11083T G14186A C14408T A23403G G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811748
 2020-04-04 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0328-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T A23403G G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811749
 2020-04-04 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0329-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T T6394C C10319T C14408T C16859T A23403G G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811751
 2020-04-04 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0331-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C10319T C14408T G16622A A23403G G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811752
 2020-04-04 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0332-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T C19955G A23403G G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

NMDC60013281
 2020-04-04 2020-06-01
 China hCoV-19/Guangzhou/ID145/2020
 TTAAAGGTTTATACC2- A361G C8782T G22468T T28144C G28878A G29742A G29868A

EPI_ISL_418653
 2020-04-05 2020-03-30
 Belgium hCoV-19/Belgium/ULG-9647/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G C25433T C26313T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_418661
 2020-04-05 2020-03-30
 Belgium hCoV-19/Belgium/ULG-9735/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7564T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_418664
 2020-04-05 2020-03-30
 Belgium hCoV-19/Belgium/ULG-9741/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7564T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421188
 2020-04-05 2020-04-07
 Belgium hCoV-19/Belgium/ULG-10009/2020
 C241T C2113T C3037T C7765T C14408T C17690T C18877T C19102T C21575T A23403G G25563T

EPI_ISL_424652
 2020-04-05 2020-04-13
 Belgium hCoV-19/Belgium/ULG-10055/2020
 C241T C3037T C14408T C15324T A23403G C27509T

EPI_ISL_424653
 2020-04-05 2020-04-13
 Belgium hCoV-19/Belgium/ULG-10058/2020
 C241T C3037T G4255T G11083T C14408T A23403G A26530G

EPI_ISL_424654
 2020-04-05 2020-04-13
 Belgium hCoV-19/Belgium/ULG-10057/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_424655
 2020-04-05 2020-04-13
 Belgium hCoV-19/Belgium/ULG-10056/2020
 C241T C3037T C11962T C14408T C15324T A23403G T25827C A27007G

EPI_ISL_424657
 2020-04-05 2020-04-13
 Belgium hCoV-19/Belgium/ULG-10052/2020
 G1440A G2891A A22393G C28606T

EPI_ISL_424658
 2020-04-05 2020-04-13
 Belgium hCoV-19/Belgium/ULG-10049/2020
 C241T A2238G C3037T C14408T C15324T A23403G

EPI_ISL_424664
 2020-04-05 2020-04-13
 Belgium hCoV-19/Belgium/ULG-10062/2020
 C241T C3037T C14408T C15277T C15324T A23403G

EPI_ISL_426414 MT358637
 2020-04-05 2020-04-16
 India SARS-CoV-2/human/IND/GBRC1/2020
 C241T C3037T A6466G C14408T A22374G A23403G G28396A C29451T

EPI_ISL_426415
 2020-04-05 2020-04-16
 India hCoV-19/India/GBRC1s/2020
 C241T C3037T G3467T A6466G C14408T A22374G A23403G G28396A C29451T

EPI_ISL_427116 MT451600
 2020-04-05 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC857/2020
 C40M C241T C1059T C3037T C14408T A23403G G25563T C25572T

EPI_ISL_427117 MT451601
 2020-04-05 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC858/2020
 C241T C3037T C14408T A23403G C26996T GGG28881AAC

EPI_ISL_427118 MT451602
 2020-04-05 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC860/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_427119 MT451603
 2020-04-05 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC862/2020
 A7479G G11083T C14805T T17247C C25572T G26144T C28887T

EPI_ISL_427120 MT451604
 2020-04-05 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC863/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_427122 MT451607
 2020-04-05 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC867/2020
 C241T C2416T C3037T T12112C C14408T A16942G G21974C A23403G G25563T G26233T

EPI_ISL_427123 MT451608
 2020-04-05 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC868/2020
 C241T C2416T C3037T T12112C C14408T A16942G G21974C A23403G G25563T G26233T

EPI_ISL_427124 MT451609
 2020-04-05 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC869/2020
 G1440A G2891A A27669G

EPI_ISL_427126 MT451611
 2020-04-05 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC871/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_427129 MT451613
 2020-04-05 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC874/2020
 C241T C3037T C6723T C13568T C14408T G18745T A23403G T26094C

EPI_ISL_427130 MT451614
 2020-04-05 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC875/2020
 T490A C3177T C6285T C8782T C15960T T18736C G19684T C24034T C27635T G28077C T28144C A29700G

EPI_ISL_427131 MT451615
 2020-04-05 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC876/2020
 C241T C3037T C14408T A23403G T27299C GGG28881AAC T29148C

EPI_ISL_427320
 2020-04-05 2020-04-18
 Russia hCoV-19/Russia/StPetersburg-RII4637S/2020
 C241T C3037T C14408T A20268G A23403G A26693G

EPI_ISL_427321
 2020-04-05 2020-04-18
 Russia hCoV-19/Russia/StPetersburg-RII4649S/2020
 C3037T C14408T A20268G A23403G A28692C

EPI_ISL_427322
 2020-04-05 2020-04-18
 Russia hCoV-19/Russia/StPetersburg-RII4655S/2020
 C241T C3037T C14408T A23403G C25603T GGG28881AAC

EPI_ISL_427635
 2020-04-05 2020-04-19
 United States hCoV-19/USA/NY-NYUMC236/2020
 C241T C1059T C3037T C9118T T13672C C14408T A23403G G25563T

EPI_ISL_427636
 2020-04-05 2020-04-19
 United States hCoV-19/USA/NY-NYUMC237/2020
 C241T C920T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_427640
 2020-04-05 2020-04-19
 United States hCoV-19/USA/NY-NYUMC241/2020
 C241T C1059T G1729T C3037T C14408T A23403G G23593T G25563T T27384C

EPI_ISL_428767
 2020-04-05 2020-04-22
 United States hCoV-19/USA/NY-NYUMC253/2020
 T212A C233T C241T C1059T C2536T C2842T C3037T C14408T G18937A A23403G G25563T

EPI_ISL_428768
 2020-04-05 2020-04-22
 United States hCoV-19/USA/NY-NYUMC254/2020
 C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_428769
 2020-04-05 2020-04-22
 United States hCoV-19/USA/NY-NYUMC255/2020
 C241T C3037T C14408T C18877T A23403G G25563T

EPI_ISL_428770
 2020-04-05 2020-04-22
 United States hCoV-19/USA/NY-NYUMC256/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_428772
 2020-04-05 2020-04-22
 United States hCoV-19/USA/NY-NYUMC258/2020
 C241T AAGTCATTT686- C1059T C3037T C14408T C21855T A23403G G25563T A26433G

EPI_ISL_428773
 2020-04-05 2020-04-22
 United States hCoV-19/USA/NY-NYUMC259/2020
 C241T C1059T C3037T A7705T C11916T C14408T C21342T A23403G A25143G G25563T A25744G C26370T

EPI_ISL_428774
 2020-04-05 2020-04-22
 United States hCoV-19/USA/NY-NYUMC260/2020
 C241T C1059T G2447A C3037T C14408T A23403G G25563T

EPI_ISL_428775
 2020-04-05 2020-04-22
 United States hCoV-19/USA/NY-NYUMC261/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_428776
 2020-04-05 2020-04-22
 United States hCoV-19/USA/NY-NYUMC262/2020
 C241T C1059T T1165C G1580A C3037T C14408T A23403G G25563T C25658T G27651T C27920T

EPI_ISL_428793
 2020-04-05 2020-04-22
 United States hCoV-19/USA/NY-NYUMC279/2020
 C241T C1059T C3037T C14408T C21697A A23403G G25563T

EPI_ISL_428795
 2020-04-05 2020-04-22
 United States hCoV-19/USA/NY-NYUMC281/2020
 C241T C920T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_428797
 2020-04-05 2020-04-22
 United States hCoV-19/USA/NY-NYUMC283/2020
 C241T C1059T C3037T C14408T C15654T A23403G G25563T

EPI_ISL_428798
 2020-04-05 2020-04-22
 United States hCoV-19/USA/NY-NYUMC284/2020
 C241T C3037T T6691C C14408T C18877T A23403G G25563T

EPI_ISL_428799
 2020-04-05 2020-04-22
 United States hCoV-19/USA/NY-NYUMC285/2020
 C241T C1059T C3037T C14408T A23403G G25563T C29149T

EPI_ISL_428801
 2020-04-05 2020-04-22
 United States hCoV-19/USA/NY-NYUMC287/2020
 C241T C1059T C3037T C14408T G23069T A23403G G25563T

EPI_ISL_428954
 2020-04-05 2020-04-22
 Luxembourg hCoV-19/Luxembourg/LNS5971805/2020
 A187G C241T C3037T C13620T C14408T A23403G T27722C GAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29864-

EPI_ISL_429630 MT375459
 2020-04-05 2020-04-23
 United States SARS-CoV-2/human/USA/WA-UW-4677/2020
 ATTAAAGGTT1- A12T C3037T C14408T A23403G C25418T G28812T AA29902-

EPI_ISL_430901 MT412258
 2020-04-05 2020-04-28
 United States SARS-CoV-2/human/USA/WA-UW-5359/2020
 ATTAAA1- C36T C241T C1059T C3037T C14408T C19763T A23403G G25563T A29903-

EPI_ISL_430902 MT412259
 2020-04-05 2020-04-28
 United States SARS-CoV-2/human/USA/WA-UW-5364/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- C36T C241T C1059T C3037T T8431C C14408T A23403G G25563T G29553A AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_430904 MT412261
 2020-04-05 2020-04-28
 United States SARS-CoV-2/human/USA/WA-UW-5371/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C36T C8782T C17747T A17858G C18060T T28144C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_430919 MT412276
 2020-04-05 2020-04-28
 United States SARS-CoV-2/human/USA/CT-UW-5754/2020
 TAAAGGTTTATACCTTCCCAGGTAACAAA3- C36T C241T C1059T C2003T C3037T C11916T C14408T C18998T A23403G G25563T GC29540AT AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_430922 MT412279
 2020-04-05 2020-04-28
 United States SARS-CoV-2/human/USA/CT-UW-5763/2020
 ATTAAA1- A31T C36T C241T C3037T C14235T C14408T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_430923 MT412280
 2020-04-05 2020-04-28
 United States SARS-CoV-2/human/USA/CT-UW-5764/2020
 ATTAAAGGT1- C36T C241T C1059T C3037T C14408T A23403G G25563T A29154T AAAAAAAAAAAAAAA29889-

EPI_ISL_432184
 2020-04-05 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-2A167/2020
 ATTA1- A2480G C2558T C2607T G11083T T12037Y C14805T A17656G G26144T G29024K

EPI_ISL_432189
 2020-04-05 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-29C76/2020
 A1- C241T C3037T C7945T G11083T C14408T A23403G GGG28881AAC

EPI_ISL_432196
 2020-04-05 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-29C49/2020
 C241T C3037T C14408T C19170T G19509A A23403G GGG28881AAC

EPI_ISL_432202
 2020-04-05 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-29E8F/2020
 A1- C241T C313T C3037T C14408T A23403G G26849T GGG28881AAC

EPI_ISL_432247
 2020-04-05 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-29C85/2020
 AT1- C241T C3037T G11521T C14408T G15016T A23403G GGG28881AAC C29284T

EPI_ISL_432248
 2020-04-05 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-29D73/2020
 ATTAAAGGTTT1- G1440A C1722T G2891A C10401T G28851T

EPI_ISL_432249
 2020-04-05 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-29DBF/2020
 A1- C193T A2480G C2558T G11083T C14805T G26144T AAA29901-

EPI_ISL_432279
 2020-04-05 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-29C94/2020
 C241T C3037T C14408T A23403G G23522A G25767K

EPI_ISL_432292
 2020-04-05 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-29C58/2020
 C241T C3037T C14408T C14786T A23403G GGG28881AAC

EPI_ISL_432675
 2020-04-05 2020-04-29
 United Kingdom hCoV-19/England/NOTT-10FA3F/2020
 A4838G G11083T C14805T T17247C C17678T G26144T

EPI_ISL_432868
 2020-04-05 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB894/2020
 C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_432869
 2020-04-05 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB895/2020
 C7423T T27032C C28863T

EPI_ISL_432870
 2020-04-05 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB896/2020
 C988T G11083T C12525T C14805T T17247C G26144T

EPI_ISL_432871
 2020-04-05 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB897/2020
 C241T C3037T C14408T A23403G G25244C G25429T C29144T

EPI_ISL_432872
 2020-04-05 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB899/2020
 C241T C3037T C4551T T5161A C14408T T17126C A20268G A23403G G29742T

EPI_ISL_432873
 2020-04-05 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB901/2020
 C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_432874
 2020-04-05 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB909/2020
 C241T C313T C3037T T3268C C14408T A23403G GGG28881AAC

EPI_ISL_432877
 2020-04-05 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB914/2020
 C241T C3037T C14408T A20268G A23403G

EPI_ISL_432881
 2020-04-05 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB922/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_432883
 2020-04-05 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB924/2020
 C241T C3037T C14408T A23403G T23590C C25782T GGG28881AAC

EPI_ISL_432886
 2020-04-05 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB927/2020
 C241T C3037T T14079C C14408T A23403G G25690T GGG28881AAC

EPI_ISL_432890
 2020-04-05 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB945/2020
 C241T C3037T C11345T C14408T A23403G C25433T

EPI_ISL_432893
 2020-04-05 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB972/2020
 C241T C3037T T10636C C14408T A23403G GGG28881AAC

EPI_ISL_432894
 2020-04-05 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB973/2020
 C241T C3037T C14408T A23403G C25433T

EPI_ISL_433066
 2020-04-05 2020-04-29
 United Kingdom hCoV-19/England/NOTT-10F98D/2020
 C241T C3037T C10440T C14408T A23403G GGG28881AAC

EPI_ISL_433636
 2020-04-05 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR1633/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_433640
 2020-04-05 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR1639/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_433646
 2020-04-05 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR1663/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_433649
 2020-04-05 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR1675/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5646T C14408T G15438T A20268G A23403G C26270T C28367T C28708T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_433651
 2020-04-05 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR1677/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G28621A GGG28881AAC ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_433652
 2020-04-05 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR1678/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16338T A23403G C27046T GGG28881AAC CCACGCGGAGTACGAT29738- G29778A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_433653
 2020-04-05 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR1685/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_433656
 2020-04-05 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR1698/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G26615T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_433657
 2020-04-05 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR1710/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C5392T C27874T G29587A ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_433706
 2020-04-05 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7820D/2020
 C241T C534T C3037T A10159G C14408T C19170T G19509A A23403G GGG28881AAC A29776G A29818G A29824G

EPI_ISL_433707
 2020-04-05 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7822B/2020
 C241T C3037T C9286T C14408T C16289T A23403G G25429T

EPI_ISL_433712
 2020-04-05 2020-04-29
 United Kingdom hCoV-19/England/CAMB-782B2/2020
 C241T C313T C3037T C14408T A23403G G28086T GGG28881AAC

EPI_ISL_433714
 2020-04-05 2020-04-29
 United Kingdom hCoV-19/England/CAMB-782EF/2020
 ATG1605- A29657T

EPI_ISL_433721
 2020-04-05 2020-04-29
 United Kingdom hCoV-19/England/CAMB-78355/2020
 A187G C241T C3037T C14408T A23403G

EPI_ISL_433728
 2020-04-05 2020-04-29
 United Kingdom hCoV-19/England/CAMB-783DD/2020
 A1260T G11083T C14805T C23707T G26144T A29020G

EPI_ISL_433729
 2020-04-05 2020-04-29
 United Kingdom hCoV-19/England/CAMB-783EC/2020
 C241T C3037T C14408T A23403G C25350T

EPI_ISL_433730
 2020-04-05 2020-04-29
 United Kingdom hCoV-19/England/CAMB-783FB/2020
 A187G C241T C3037T C14408T A23403G

EPI_ISL_433731
 2020-04-05 2020-04-29
 United Kingdom hCoV-19/England/CAMB-78407/2020
 A187G C241T C3037T C14408T A23403G

EPI_ISL_433732
 2020-04-05 2020-04-29
 United Kingdom hCoV-19/England/CAMB-78416/2020
 A2480G C2558T G7393T G10958T G11083T C14805T C21639T C25513T G26144T

EPI_ISL_433734
 2020-04-05 2020-04-29
 United Kingdom hCoV-19/England/CAMB-78452/2020
 C241T C3037T G14197T C14408T A23403G GGG28881AAC

EPI_ISL_433736
 2020-04-05 2020-04-29
 United Kingdom hCoV-19/England/CAMB-78470/2020
 C241T G2164A C3037T C14408T A23403G GGG28881AAC

EPI_ISL_433745
 2020-04-05 2020-04-29
 United Kingdom hCoV-19/England/CAMB-78531/2020
 C241T C3037T C14408T T15460C A23403G G26211T GGG28881AAC

EPI_ISL_433750
 2020-04-05 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7858C/2020
 C241T C3037T C6926T C14408T T15336C C19170T G19509A A23403G T25272C GGG28881AAC

EPI_ISL_433752
 2020-04-05 2020-04-29
 United Kingdom hCoV-19/England/CAMB-785AA/2020
 C241T C534T C3037T A10159G C14408T C19170T G19509A A23403G GGG28881AAC A29776G A29818G A29824G

EPI_ISL_433757
 2020-04-05 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7862F/2020
 C241T C3037T G11222T C14408T T18083C C21707T A23403G GGG28881AAC

EPI_ISL_433758
 2020-04-05 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7864D/2020
 C241T C3037T C14408T C21058T A23403G GGG28881AAC

EPI_ISL_433762
 2020-04-05 2020-04-29
 United Kingdom hCoV-19/England/CAMB-786A7/2020
 C241T C2416T C3037T C14408T C14786T G20578T A23403G G25563T

EPI_ISL_433764
 2020-04-05 2020-04-29
 United Kingdom hCoV-19/England/CAMB-786E3/2020
 C241T C3037T C3903T C14408T A23403G C25460T G28086T GGG28881AAC

EPI_ISL_433765
 2020-04-05 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7870E/2020
 C241T C3037T T3502A C9438T G10262A C14408T T19839C C22995T A23403G A27669G GGG28881AAC

EPI_ISL_433770
 2020-04-05 2020-04-29
 United Kingdom hCoV-19/England/CAMB-78786/2020
 C241T C635T C3037T C11824T C14408T A23403G C25350T

EPI_ISL_433771
 2020-04-05 2020-04-29
 United Kingdom hCoV-19/England/CAMB-787A4/2020
 C241T C3037T C14408T G16528T A23403G GGG28881AAC

EPI_ISL_433842
 2020-04-05 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7AB2E/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_434064 MT632893
 2020-04-05 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S304/2020
 C3311A C8782T G17671T C17747T A17858G C18060T T28144C

EPI_ISL_434087 MT632886
 2020-04-05 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S327/2020
 C8782T G15406A C17010T C17747T A17858G C18060T T28144C

EPI_ISL_434105 MT632843
 2020-04-05 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S345/2020
 T13C C3311A C8782T G17671T C17747T A17858G C18060T T28144C

EPI_ISL_434220 MT632937
 2020-04-05 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S460/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_434228 MT632984
 2020-04-05 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S468/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_434229 MT632940
 2020-04-05 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S469/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_434230 MT632962
 2020-04-05 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S470/2020
 C241T C1059T C3037T C14408T C22713T A23403G G25563T

EPI_ISL_434232 MT632825
 2020-04-05 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S472/2020
 C241T C3037T C14408T G16813A A23403G GGG28881AAC T29867G

EPI_ISL_434237 MT632987
 2020-04-05 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S477/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_434240 MT632905
 2020-04-05 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S480/2020
 C241T C1059T C3037T C12880T C14408T A23403G G25563T G29553A

EPI_ISL_434243 MT632971
 2020-04-05 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S483/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_436424
 2020-04-05 2020-05-06
 India hCoV-19/India/NCDC-3163/2020
 T76W G2081K T2087Y C2091Y C2094Y C6310A C6312A G12355K G12685T G12859R C13730T C17456Y A17553R C19524T C22120S C23929T AG24389MS A26973R C28311T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_436425
 2020-04-05 2020-05-06
 India hCoV-19/India/NCDC-3170/2020
 C1707T C1912T C6310A C6312A T6457Y G11083T C13730T C19524T C23929T AG24389MS G26709R C28311T C29614T GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_436426
 2020-04-05 2020-05-06
 India hCoV-19/India/NCDC-3175/2020
 T4941Y C6310A C6312A C7600T T8022K A8026W G11083T G12685T C13730T A16355G C19524T G19967R G22289T T22515Y C23929T AG24389MS C28311T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_436428
 2020-04-05 2020-05-06
 India hCoV-19/India/NCDC-3181/2020
 C4900Y C6312A T8022K G11083T C13730T T16232W A16281R T18690K C23929T G24056R AG24389MS C28311T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_436429
 2020-04-05 2020-05-06
 India hCoV-19/India/NCDC-3190/2020
 G458R C7600Y T8022K A8026W T8586W G9471S G12315K C12420Y C13730T A13853W A15435R G18368K T19989K C23929T AG24389MS C28311Y TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_436431
 2020-04-05 2020-05-06
 India hCoV-19/India/NCDC-3230/2020
 C1059Y C1707Y T4941Y C6310M C6312A G11083T C13730T C19524T C23929T AG24389MS T24622Y C28311T A28676M TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_436433
 2020-04-05 2020-05-06
 India hCoV-19/India/NCDC-3271/2020
 G1820A C1887Y A1966R C6310A C6312A C7573Y T8022K A8026W G9471S G11083T T11515W C13730T C19524T A20935R C23929T T24886Y C28311T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_436637 MT706449
 2020-04-05 2020-05-06
 United States SARS-CoV-2/human/USA/WI-UW-343/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A4117G G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_436959 MT446359
 2020-04-05 2020-05-07
 United States SARS-CoV-2/human/USA/LA-BIE-092/2020
 C241T C1059T C3037T G8867A C10319T A11268G C14408T A23403G G25563T C27964T

EPI_ISL_437054 MT449646
 2020-04-05 2020-05-08
 United States SARS-CoV-2/human/USA/CA-CZB-1054/2020
 ATTAAA1- AAGTCATTT686- C10277T T15922Y AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_437087 MT449678
 2020-04-05 2020-05-08
 United States SARS-CoV-2/human/USA/CA-CZB-1087/2020
 A1- A14940G T15922Y C16045T

EPI_ISL_437088 MT449679
 2020-04-05 2020-05-08
 United States SARS-CoV-2/human/USA/CA-CZB-1088/2020
 ATTAAAGGTTT1- G491A A14940G T15922Y AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_437213
 2020-04-05 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0012/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_437290
 2020-04-05 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0099/2020
 C241T C3037T C4543T C14408T A23403G G25049T

EPI_ISL_437365
 2020-04-05 2020-05-08
 United States hCoV-19/USA/MN-MDH-372/2020
 A1- C241T C1059T C3037T C5878T G10870T C14408T A23403G G25563T A25859G C29149T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_437691
 2020-04-05 2020-05-11
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Makkah124/2020
 C241T G2369A C3037T A12533G C14408T C18877T A23403G G25563T C26735T

EPI_ISL_437692
 2020-04-05 2020-05-11
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Makkah126/2020
 C241T C3037T A5421G C14408T C18877T A23403G G25563T C26735T

EPI_ISL_437693
 2020-04-05 2020-05-11
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Makkah138/2020
 C241T C3037T T7919C C14408T C17104T C18877T A23403G G25563T C26735T C29719A

EPI_ISL_437694
 2020-04-05 2020-05-11
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Makkah139/2020
 C241T C3037T G14122T C14408T C18877T T19984C A23403G G25563T

EPI_ISL_437695
 2020-04-05 2020-05-11
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Makkah142/2020
 C241T C3037T C14408T C18877T A21194G A23403G G25563T C26735T G29543C

EPI_ISL_437839 MT461639
 2020-04-05 2020-05-11
 United States SARS-CoV-2/human/USA/WA-UW-6478/2020
 TAAAGGTTTATA3- CCCAGGTAACAAACCAA19- C36T C241T C1059T C3037T C14408T A23403G G25563T G29553A -29904AAAAAAAAAAAA

EPI_ISL_437843 MT461643
 2020-04-05 2020-05-11
 United States SARS-CoV-2/human/USA/WA-UW-6484/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C36T T334C C8782T A13198G C17747T A17858G C18060T T27384C T28144C GG29861AA G29864A TG29867AA C29870A

EPI_ISL_437844 MT461644
 2020-04-05 2020-05-11
 United States SARS-CoV-2/human/USA/WA-UW-6485/2020
 ATTAAAGGTT1- AACC30CTTT C36T C241T C1059T C3037T C14408T G16912T A23403G G25563T G29553A GG29861AA G29864A TG29867AA C29870A

EPI_ISL_437852 MT461649
 2020-04-05 2020-05-11
 United States SARS-CoV-2/human/USA/UNKNOWN-UW-6504/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C36T C241T C313T C3037T C3096T C14408T C20320T A23403G C25904T GGG28881AAC CAGTG29762- CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_437856 MT461653
 2020-04-05 2020-05-11
 United States SARS-CoV-2/human/USA/WA-UW-6526/2020
 ATTAAA1- AAC34TTT C241T C3037T C14408T A22215T A23403G AA29902-

EPI_ISL_437857 MT461654
 2020-04-05 2020-05-11
 United States SARS-CoV-2/human/USA/WA-UW-6527/2020
 ATTAAAGGTTTAT1- A31T AAC34TTT A2274C C8782T C17747T A17858G C18060T T18345C T23010C T23427C C25231T T28144C -29904AAAAAAAAAAA

EPI_ISL_437858 MT461655
 2020-04-05 2020-05-11
 United States SARS-CoV-2/human/USA/WA-UW-6528/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACT1- C3037T C14408T A23403G AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_437863 MT461660
 2020-04-05 2020-05-11
 United States SARS-CoV-2/human/USA/WA-UW-6559/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- ACC35TTH C241T G680A C1059T C3037T C14408T G16912T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_438123
 2020-04-05 2020-05-12
 Austria hCoV-19/Austria/CeMM0360/2020
 C241T C3037T C14408T T22521K A23403G A23687R C24621T A26269M C27046T GGG28881AAC AAAAAAAAAAAAAAAAAA29886-

EPI_ISL_438127
 2020-04-05 2020-05-12
 Austria hCoV-19/Austria/CeMM0364/2020
 C241T C3037T C12073T C14408T T22521K A23403G C24642T C27046T G28395T GGG28881AAC AAAA29900-

EPI_ISL_441695
 2020-04-05 2020-05-12
 United Kingdom hCoV-19/England/CAMB-7D5B4/2020
 ATTAAAG1- G1440A G2891A A6173G A27669G C28887T AAAAAAAAAAAAAAAA29888-

EPI_ISL_441735
 2020-04-05 2020-05-12
 United Kingdom hCoV-19/England/CAMB-7D9C7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C7851T G11083T G13004T G13627T C14805T C15105T C15540T G26144T A28338G G29348T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_442048
 2020-04-05 2020-05-12
 United Kingdom hCoV-19/England/CAMB-7C7A0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G860A A2480G T2533A C2558T G11083T C14805T G21800T T25202K G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_442059
 2020-04-05 2020-05-12
 United Kingdom hCoV-19/England/CAMB-7D059/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C934T C3037T C14408T A23403G A24817C GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_442064
 2020-04-05 2020-05-12
 United Kingdom hCoV-19/England/CAMB-7CAA7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7231T C14408T A23403G G23873T T25202K GGG28881AAC

EPI_ISL_442121
 2020-04-05 2020-05-12
 United Kingdom hCoV-19/England/CAMB-7CB77/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A7444G A11875G C14408T G14773A C19488T A23403G T25202K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_442126
 2020-04-05 2020-05-12
 United Kingdom hCoV-19/England/CAMB-7BE33/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1170T C3037T C11379T C14408T A23403G T25202K GGG28881AAC AAAAA29899-

EPI_ISL_442134
 2020-04-05 2020-05-12
 United Kingdom hCoV-19/England/CAMB-7BDEB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13335T C14408T A23403G GGG28881AAC AAAAA29899-

EPI_ISL_442170
 2020-04-05 2020-05-12
 United Kingdom hCoV-19/England/CAMB-7B853/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G16206T A23403G GGG28881AAC

EPI_ISL_442188
 2020-04-05 2020-05-12
 United Kingdom hCoV-19/England/CAMB-7CB95/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4180T C14408T C19488T G22484T A23403G T25202K GGG28881AAC AAAAAAA29897-

EPI_ISL_442254
 2020-04-05 2020-05-12
 United Kingdom hCoV-19/England/CAMB-7CE50/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C14408T C14786T G20578T A23403G G25563T AAAAAAAAAAAAAAAAAAA29885-

EPI_ISL_442641
 2020-04-05 2020-05-12
 United Kingdom hCoV-19/England/BRIS-1235BC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- TGGTTG519- A3917G C8782T T9477A C14805T T19517C G25979T C27219T T28144C C28657T C28863T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_442719
 2020-04-05 2020-05-12
 United Kingdom hCoV-19/England/BRIS-123103/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2164A C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_442736
 2020-04-05 2020-05-12
 United Kingdom hCoV-19/England/BRIS-123051/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C19402T A23403G C28606T GGG28881AAC

EPI_ISL_442754
 2020-04-05 2020-05-12
 United Kingdom hCoV-19/England/BRIS-1232B5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_443183
 2020-04-05 2020-05-12
 United States hCoV-19/USA/MN-UMGC-1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4185T A6228G C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_444495
 2020-04-05 2020-05-13
 Canada hCoV-19/Canada/QC_AA3/2020
 C241T C3037T C14408T C15324T A23403G C25433T

EPI_ISL_444857
 2020-04-05 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-1393/2020
 C241T C3037T G11083T C14408T G21724T A23403G GGG28881AAC

EPI_ISL_444972
 2020-04-05 2020-05-14
 Spain hCoV-19/Spain/Barcelona_VH6819/2020
 C241T C3037T G11083T C14408T A20268G A23403G C23430T

EPI_ISL_445175 MT474132
 2020-04-05 2020-05-15
 United States SARS-CoV-2/human/USA/CA-CZB-1127/2020
 C241T C3037T C4540T G4904T G5206T C14408T G14653K A23403R C24138T C25350T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_445176 MT474133
 2020-04-05 2020-05-15
 United States SARS-CoV-2/human/USA/CA-CZB-1128/2020
 ATTAAAG1- C241T C3037T C14408T A23403R G25244T A28858G AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_445230
 2020-04-05 2020-05-15
 Sweden hCoV-19/Sweden/20-07044/2020
 C241T C1059T C3037T G3259T C14408T T23042C A23403G G24368T G25563T

EPI_ISL_445370
 2020-04-05 2020-05-15
 Chile hCoV-19/Chile/Santiago_74/2020
 AT1GA C241T C3037T C14408T A23403G T27299C GGG28881AAC T29148C GGA29861TAT TG29867CC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_445377
 2020-04-05 2020-05-15
 Chile hCoV-19/Chile/Santiago_80/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C6573T C14408T A23403G GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_445541
 2020-04-05 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-2A246/2020
 A1- C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_445571
 2020-04-05 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-2A49B/2020
 C241T C3037T T5573C C6380T G11801A C14408T T19839C A23403G G24586T G25552T GGG28881AAC T29607C

EPI_ISL_445572
 2020-04-05 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-2A4AA/2020
 A1- C241T C3037T C14408T A23403G T26512C AAAAAA29898-

EPI_ISL_445589
 2020-04-05 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-2A5B6/2020
 ATTA1- C241T C3037T C14408T C14786T A23403G GGG28881AAC T29029C

EPI_ISL_445677
 2020-04-05 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-2ABD2/2020
 C241T C3037T G4510A T10177C C14408T A23403G

EPI_ISL_445691
 2020-04-05 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-2ACDF/2020
 C241T C3037T C6543Y C6990T C10834Y C14408T A23403G

EPI_ISL_445698
 2020-04-05 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-2AD54/2020
 ATTA1- C241T C3037T C14408T C14741T A23403G T24923C

EPI_ISL_447810
 2020-04-05 2020-05-18
 Colombia hCoV-19/Colombia/GVI-98011/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCT1- C241T C1059T C3037T C11916T C14408T C19018T T19632C A23403G G25563T G25641T A26708G AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_447812
 2020-04-05 2020-05-18
 Colombia hCoV-19/Colombia/GVI-98087/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCT1- C241T C3037T C14408T C18877T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_447813
 2020-04-05 2020-05-18
 Colombia hCoV-19/Colombia/GVI-98290/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T C3037T A10985G C14408T G14785A C18877T A23403G G25563T G27463T GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_448118
 2020-04-05 2020-05-19
 United Kingdom hCoV-19/Scotland/CVR1584/2020
 ATG1605- C12710T C16073T C28854T

EPI_ISL_448120
 2020-04-05 2020-05-19
 United Kingdom hCoV-19/Scotland/CVR1623/2020
 C241T C843T C3037T C14408T C16289T A23403G T25222C G25429T

EPI_ISL_448121
 2020-04-05 2020-05-19
 United Kingdom hCoV-19/Scotland/CVR1624/2020
 ATG1605- C12710T C28854T

EPI_ISL_448450
 2020-04-05 2020-05-19
 United Kingdom hCoV-19/England/OXON-AC437/2020
 C241T C3037T A10948G C14408T A23403G C27542T GGG28881AAC

EPI_ISL_448453
 2020-04-05 2020-05-19
 United Kingdom hCoV-19/England/OXON-AC491/2020
 G11083T C14805T C18570T G25769T G26144T G28842T

EPI_ISL_448458
 2020-04-05 2020-05-19
 United Kingdom hCoV-19/England/OXON-AC534/2020
 C241T C3037T C14408T C19512T A23403G GGG28881AAC

EPI_ISL_448460
 2020-04-05 2020-05-19
 United Kingdom hCoV-19/England/OXON-AC552/2020
 C241T C3037T G10097A C14408T A23403G C23731T G28580T G28628C GGG28881AAC

EPI_ISL_448462
 2020-04-05 2020-05-19
 United Kingdom hCoV-19/England/OXON-AC570/2020
 C241T C3037T C13378T C14408T A23403G GGG28881AAC

EPI_ISL_448468
 2020-04-05 2020-05-19
 United Kingdom hCoV-19/England/OXON-AC613/2020
 C241T C2416T C3037T C6384T C14408T C14786T T16503C G20578T A23403G G25563T T27810C

EPI_ISL_448476
 2020-04-05 2020-05-19
 United Kingdom hCoV-19/England/OXON-AC6D7/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_448477
 2020-04-05 2020-05-19
 United Kingdom hCoV-19/England/OXON-AC6F5/2020
 A929G C6027T T6630C G11083T C14805T T18771C G26144T A29879C

EPI_ISL_448478
 2020-04-05 2020-05-19
 United Kingdom hCoV-19/England/OXON-AC710/2020
 T95K C241T C3037T C14408T G21624T A23403G C23625T GGG28881AAC

EPI_ISL_448480
 2020-04-05 2020-05-19
 United Kingdom hCoV-19/England/OXON-AC73E/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_448483
 2020-04-05 2020-05-19
 United Kingdom hCoV-19/England/OXON-AC798/2020
 C241T C3037T G12550A C14408T C16362T A23403G GGG28881AAC

EPI_ISL_448485
 2020-04-05 2020-05-19
 United Kingdom hCoV-19/England/OXON-AC7F2/2020
 A70W C241T C3037T C6723T T9476K C14408T A23403G GGG28881AAC

EPI_ISL_448486
 2020-04-05 2020-05-19
 United Kingdom hCoV-19/England/OXON-AC81D/2020
 C241T C3037T C5817T C14408T A23403G GGG28881AAC

EPI_ISL_448487
 2020-04-05 2020-05-19
 United Kingdom hCoV-19/England/OXON-AC83B/2020
 C241T C1288T G2801A C3037T C6723T C14408T A23403G GGG28881AAC C29837T

EPI_ISL_448490
 2020-04-05 2020-05-19
 United Kingdom hCoV-19/England/OXON-AC895/2020
 C241T C3037T C9430T C14408T C16289T C18312T A23403G G25429T C27046T

EPI_ISL_448491
 2020-04-05 2020-05-19
 United Kingdom hCoV-19/England/OXON-AC8D1/2020
 C241T C1288T C3037T C6723T C14408T A23403G GGG28881AAC

EPI_ISL_448500
 2020-04-05 2020-05-19
 United Kingdom hCoV-19/England/OXON-AC9B0/2020
 C241T C3037T T3982C C5157T C7164T C14408T A23403G C25587T C27046T C28344A GGG28881AAC

EPI_ISL_448504
 2020-04-05 2020-05-19
 United Kingdom hCoV-19/England/OXON-ACA53/2020
 C241T C3037T A10948G C14408T A23403G G26416C C27542T C27549T GGG28881AAC

EPI_ISL_448507
 2020-04-05 2020-05-19
 United Kingdom hCoV-19/England/OXON-ACADB/2020
 T93K C241T C3037T C6723T C14408T A23403G GGG28881AAC

EPI_ISL_448511
 2020-04-05 2020-05-19
 United Kingdom hCoV-19/England/OXON-ACB50/2020
 C241T C3037T C14408T G19735T C20031A A20232G A23403G C27046T GGG28881AAC

EPI_ISL_448517
 2020-04-05 2020-05-19
 United Kingdom hCoV-19/England/OXON-ACBE7/2020
 C241T C3037T A11782G C14408T G22203T A23403G

EPI_ISL_448518
 2020-04-05 2020-05-19
 United Kingdom hCoV-19/England/OXON-ACC02/2020
 C241T C3037T C6723T C14408T A23403G GGG28881AAC

EPI_ISL_448519
 2020-04-05 2020-05-19
 United Kingdom hCoV-19/England/OXON-ACC11/2020
 A2480G C2558T G11083T C14805T T17599A G26144T

EPI_ISL_448521
 2020-04-05 2020-05-19
 United Kingdom hCoV-19/England/OXON-ACC5D/2020
 C241T C3037T G10097A C14408T A23403G C23731T G28580T G28628C GGG28881AAC

EPI_ISL_448525
 2020-04-05 2020-05-19
 United Kingdom hCoV-19/England/OXON-ACCB7/2020
 A22W C241T T1537C C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_448527
 2020-04-05 2020-05-19
 United Kingdom hCoV-19/England/OXON-ACCD5/2020
 C241T C3037T C5817T C14408T A23403G GGG28881AAC

EPI_ISL_448530
 2020-04-05 2020-05-19
 United Kingdom hCoV-19/England/OXON-ACD1E/2020
 C241T C3037T T3982C C14408T A23403G C25587T C27046T C28344A GGG28881AAC

EPI_ISL_448533
 2020-04-05 2020-05-19
 United Kingdom hCoV-19/England/OXON-ACD5A/2020
 C241T C3037T T3982C C7164T C14408T A23403G C25587T C27046T C28344A GGG28881AAC

EPI_ISL_448541
 2020-04-05 2020-05-19
 United Kingdom hCoV-19/England/OXON-ACE57/2020
 C241T C3037T A10948G C14408T A23403G C27542T GGG28881AAC

EPI_ISL_448542
 2020-04-05 2020-05-19
 United Kingdom hCoV-19/England/OXON-ACE75/2020
 C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_448545
 2020-04-05 2020-05-19
 United Kingdom hCoV-19/England/OXON-ACEC0/2020
 C241T C3037T C3267T C6861T C14408T C19170T G19509A A23403G GGG28881AAC

EPI_ISL_448546
 2020-04-05 2020-05-19
 United Kingdom hCoV-19/England/OXON-ACEEE/2020
 C241T C3037T C13026T C14408T A23403G GGG28881AAC

EPI_ISL_450178
 2020-04-05 2020-05-20
 United States hCoV-19/USA/LA-SR0324/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T

EPI_ISL_450812
 2020-04-05 2020-05-22
 Sweden hCoV-19/Sweden/20-07041/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T G27382C

EPI_ISL_451169
 2020-04-05 2020-05-23
 Belgium hCoV-19/Belgium/UGent-58/2020
 C241T C3037T G6109A C14408T C18877T A23403G G25563T

EPI_ISL_451170
 2020-04-05 2020-05-23
 Belgium hCoV-19/Belgium/UGent-59/2020
 A187G C241T C3037T T5941C C14408T A23403G G25599T

EPI_ISL_451173
 2020-04-05 2020-05-23
 Belgium hCoV-19/Belgium/UGent-62/2020
 C241T AAGTCATTT686- C3037T C14408T T19839C A23403G C24099T GGG28881AAC

EPI_ISL_452207
 2020-04-05 2020-05-27
 India hCoV-19/India/NIV-7439/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C313T C3037T C5700A C14408T A23403G GGG28881AAC A29827T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830C

EPI_ISL_452208
 2020-04-05 2020-05-27
 India hCoV-19/India/NIV-7511/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C6312A G11083T C13730T C23929T C28311T A29827T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830T

EPI_ISL_452805 MT558656
 2020-04-05 2020-05-27
 United States SARS-CoV-2/human/USA/VA-DCLS-0228/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1917T C3037T C14408T A23403G G25563T G29868R C29870A

EPI_ISL_452806 MT558657
 2020-04-05 2020-05-27
 United States SARS-CoV-2/human/USA/VA-DCLS-0229/2020
 ATTAAAGGT1- T10C C241T C3037T C10582T C11747T C14408T C18877T A23403G G25459T G25555T G25563T G28086T C29870A

EPI_ISL_452807 MT558658
 2020-04-05 2020-05-27
 United States SARS-CoV-2/human/USA/VA-DCLS-0230/2020
 ATTA1- C241T C3037T C14408T C18877T A23403G G25459T G25555T G25563T G28086T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_452808 MT558659
 2020-04-05 2020-05-27
 United States SARS-CoV-2/human/USA/VA-DCLS-0231/2020
 ATTAAAGGTTTATACC1- C241T C3037T C11747T C14408T C18877T A23403G G25459T G25555T G25563T G28086T

EPI_ISL_453984
 2020-04-05 2020-05-28
 Portugal hCoV-19/Portugal/PT0270/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3244T T9230C C12741T C14408T A23403G GGG28881AAC C29659T AGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29799-

EPI_ISL_453987
 2020-04-05 2020-05-28
 Portugal hCoV-19/Portugal/PT0273/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3244T C12741T C14408T A23403G GGG28881AAC C29659T TACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29760-

EPI_ISL_453988
 2020-04-05 2020-05-28
 Portugal hCoV-19/Portugal/PT0274/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T C15925T G23401T A23403G GGG28881AAC ATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29792-

EPI_ISL_453989
 2020-04-05 2020-05-28
 Portugal hCoV-19/Portugal/PT0275/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C12741T C14408T A19855C A23403G GGG28881AAC C29659T AACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29767-

EPI_ISL_453990
 2020-04-05 2020-05-28
 Portugal hCoV-19/Portugal/PT0276/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3244T C12741T C14408T A19855C A23403G GGG28881AAC C29659T AACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29694-

EPI_ISL_453992
 2020-04-05 2020-05-28
 Portugal hCoV-19/Portugal/PT0278/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTA1- G11083T G12514T C12778T C14805T T17247C G26144T GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_453993
 2020-04-05 2020-05-28
 Portugal hCoV-19/Portugal/PT0279/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTA1- G11083T C12778T C14805T T17247C G26144T ATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29752-

EPI_ISL_454401
 2020-04-05 2020-05-28
 United States hCoV-19/USA/PA-MGEL137/2020
 C241T T1918C T2022C C3037T C14408T C15540T C18877T C23230T A23403G C25469T G25563T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_454410
 2020-04-05 2020-05-28
 United States hCoV-19/USA/PA-MGEL154/2020
 C241T C1059T C3037T C5869T C14408T A23403G T23485C G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_454549
 2020-04-05 2020-05-28
 India hCoV-19/India/NIV-7558/2020
 C2558T C6190T G11083T T13542C C14805T G26144T A29827T G29830T

EPI_ISL_455151
 2020-04-05 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_346/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C20703T A23403G GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455152
 2020-04-05 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_347/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T C16193T A22404T A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455203
 2020-04-05 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_401/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7095T C14408T A16179G A23403G GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455358 MW008587
 2020-04-05 2020-05-29
 United States SARS-CoV-2/human/USA/GA-EHC-136H/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C1059T C3037T C14408T A23403G G25563T T27553C AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_455965
 2020-04-05 2020-06-01
 Belgium hCoV-19/Belgium/ULG-10177/2020
 C241T C3037T G11222T C14408T A23403G

EPI_ISL_456348
 2020-04-05 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR2051/2020
 C241T C3037T T7438C C14408T A23403G C26882T C29353T

EPI_ISL_456352
 2020-04-05 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR2058/2020
 C241T C3037T C4683T C14408T A23403G G24077T

EPI_ISL_456353
 2020-04-05 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR2059/2020
 C241T C14408T C16289T T18012C A23403G

EPI_ISL_456376
 2020-04-05 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR2097/2020
 C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T C29774T

EPI_ISL_456913
 2020-04-05 2020-06-02
 United Kingdom hCoV-19/Scotland/EDB3105/2020
 C241T C3037T C9223T C14408T A23403G

EPI_ISL_457047
 2020-04-05 2020-06-02
 United Kingdom hCoV-19/England/EXET-1352FC/2020
 C241T C3037T C6903T A13456G C14408T A23403G GGG28881AAC

EPI_ISL_457048
 2020-04-05 2020-06-02
 United Kingdom hCoV-19/England/EXET-135308/2020
 C241T ACGGCGCCGATC672- C3037T A13456G C14408T A23403G GGG28881AAC

EPI_ISL_457096
 2020-04-05 2020-06-02
 United Kingdom hCoV-19/England/EXET-135775/2020
 C241T C1185T C3037T C14408T C18029T A23403G GGG28881AAC

EPI_ISL_458142
 2020-04-05 2020-06-03
 Brazil hCoV-19/Brazil/AP162966-IEC/2020
 C241T C3037T C6433T C9286T C14408T A23403G T27299C GGG28881AAC T29148C

EPI_ISL_458245
 2020-04-05 2020-06-04
 United States hCoV-19/USA/CA-SR0361/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27577T C28651T

EPI_ISL_458250
 2020-04-05 2020-06-04
 United States hCoV-19/USA/CA-SR0367/2020
 C241T A1096G C1420T C3037T C14408T G14874T C18877T A23403G G25563T

EPI_ISL_458252
 2020-04-05 2020-06-04
 United States hCoV-19/USA/CA-SR0369/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_458281
 2020-04-05 2020-06-04
 United States hCoV-19/USA/CA-SR0411/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_459131
 2020-04-05 2020-06-04
 United Kingdom hCoV-19/Scotland/GCVR-173E2B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T8278C G12070T C14408T T17126C A20268G C20719T G22335T A23403G A27578T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_459137
 2020-04-05 2020-06-04
 United Kingdom hCoV-19/Scotland/GCVR-172B9E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1045G C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_460309 MT520384
 2020-04-05 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00227/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C2416T C3037T C3040T C14408T A23403G C24096A G25563T C29750T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460341 MT520416
 2020-04-05 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00673/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C2416T C3037T T8665G C14408T G21824T A23403G G25311T G25563T G26233T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_460418 MT520493
 2020-04-05 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00316/2020
 ATTAAA1- C241T C1059T C3037T C14408T C16260T C18555T G21604T A23403G G25563T C27331T C28821A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_460431 MT520506
 2020-04-05 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00307/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C1059T C3037T C14408T C16260T G21604T A23403G G25563T C28821A AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460663
 2020-04-05 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_490/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T8643C C10681T C14408T G15438T A20268G A23403G G25785T A27403T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460753
 2020-04-05 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_589/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7095T C14408T A16179G C21588T A23403G G25012T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460824
 2020-04-05 2020-06-06
 Netherlands hCoV-19/Netherlands/Overijssel_5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T13006C C14408T A23403G G25563T C25688T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461120
 2020-04-05 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_685/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C11109T C14408T A23403G G25563T C26681T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461131
 2020-04-05 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_696/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T10561C C14408T C15324T A23403G C28849T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461410
 2020-04-05 2020-06-06
 United States hCoV-19/USA/WA-UW-6585/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- AAC34HTT C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_461413 MT683407
 2020-04-05 2020-06-06
 United States SARS-CoV-2/human/USA/WA-UW-6589/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- AAC34TTT C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_461415
 2020-04-05 2020-06-06
 United States hCoV-19/USA/WA-UW-6591/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_461419 MT683409
 2020-04-05 2020-06-06
 United States SARS-CoV-2/human/USA/WA-UW-6601/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_461421 MT683410
 2020-04-05 2020-06-06
 United States SARS-CoV-2/human/USA/WA-UW-6605/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_461427 MT683397
 2020-04-05 2020-06-06
 United States SARS-CoV-2/human/USA/WA-UW-4676/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- T63C C66T A70T C241T C3037T C14408T A23403G G28812T TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_461435 MT683386
 2020-04-05 2020-06-06
 United States SARS-CoV-2/human/USA/CT-UW-5104/2020
 ATTAAA1- C241T C3037T G9431T C14119T C14408T C18877T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_463904
 2020-04-05 2020-06-11
 Canada hCoV-19/Canada/QC_AC6.1/2020
 C241T C3037T C14408T C15324T A23403G C25433T

EPI_ISL_463910
 2020-04-05 2020-06-11
 Canada hCoV-19/Canada/QC_AF2/2020
 C241T C1473T C3037T C5986T C14408T C15324T A23403G C25433T C27567T

EPI_ISL_464013
 2020-04-05 2020-06-11
 Canada hCoV-19/Canada/ON-UHTC_0049/2020
 C8092T C8782T C17747T A17858G C18060T G22801T A24694T T28144C

EPI_ISL_464083
 2020-04-05 2020-06-11
 Belgium hCoV-19/Belgium/rega-0405289/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T T22092C A23403G G25563T G29291A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_466219
 2020-04-05 2020-06-11
 United Kingdom hCoV-19/England/20149055204/2020
 C241T C3037T C6336Y G11083T C14408T G19635A A23403G GGG28881AAC

EPI_ISL_466240
 2020-04-05 2020-06-11
 United Kingdom hCoV-19/England/20152067804/2020
 C241T C3037T G3320K G3890K G5294K G5880K G8776K G9460K C14408T G15202T T17835C G18225R A22461R G22800R G22902K A23403G C26947Y T27384Y ATT27579-

EPI_ISL_467456
 2020-04-05 2020-06-14
 South Africa hCoV-19/South Africa/KRISP-0084/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T C16376T A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_467460
 2020-04-05 2020-06-14
 South Africa hCoV-19/South Africa/KRISP-0091/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T C16376T A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_467466
 2020-04-05 2020-06-14
 South Africa hCoV-19/South Africa/KRISP-0112/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C14408T C16376T A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_467467
 2020-04-05 2020-06-14
 South Africa hCoV-19/South Africa/KRISP-0113/2020
 ATTAAAGGTTTAT1- C241T C3037T C14408T C16376T A16561C A23403G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_468501 MT628225
 2020-04-05 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1564/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T C3037T C9180T C14408T A23403G G25563T

EPI_ISL_468535 MT628258
 2020-04-05 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1606/2020
 C241T C1059T C3037T C14408T G20342T A23403G G25563T

EPI_ISL_469129
 2020-04-05 2020-06-17
 Singapore hCoV-19/Singapore/380/2020
 C241T C3037T C8730T C13730T C14408T A23403G G25429T C27416A AAAAAAAAAAAA29892-

EPI_ISL_470497
 2020-04-05 2020-06-18
 United Kingdom hCoV-19/England/CAMB-7BE60/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C20483T G21800T A23403G G28514T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_470532
 2020-04-05 2020-06-18
 United Kingdom hCoV-19/England/CAMB-7CBB3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G4185A C9438T G11083T A11590G C14805T T25202K G26144T C29013T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_470832
 2020-04-05 2020-06-19
 Australia hCoV-19/Australia/WA14/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C4540T ATAGTT6510- C8140T C8782T T9477A C14805T G25979T TCTATCAGTTACGTGCCAGATCAGTTTCACCTAAACTGTTCATCAGACAAGAGGAAGTTCAAGAACTTTACTCTCCAATTTTTCTTATTGTTGCGGCAATAGTGTTTATAACACTTTGCTTCACACTCAAAAGAAAGACAGAATGATTGAACTTTCATTAATTGACTTCTATTTGTGCTTTTTAGCCT27614- T28144C C28311T C28657T C28863T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_475121
 2020-04-05 2020-06-23
 Sweden hCoV-19/Sweden/20-08804/2020
 C241T C1059T C3037T T10288A C14408T A23403G G24368T G25563T

EPI_ISL_475152
 2020-04-05 2020-06-23
 Sweden hCoV-19/Sweden/20-50659/2020
 C241T C1059T C3037T C14408T G17790T G21987T A23403G G24368T G25563T

EPI_ISL_475594
 2020-04-05 2020-06-23
 United States hCoV-19/USA/CA-CSMC118/2020
 C241T C1059T C3037T C14408T G15908A A23403G G25563T

EPI_ISL_475595
 2020-04-05 2020-06-23
 United States hCoV-19/USA/CA-CSMC119/2020
 C241T C379A T2310C C5002T G12221A G23351C A23403G A23554G G25563T A26057C C27644T A29658C

EPI_ISL_475597
 2020-04-05 2020-06-23
 United States hCoV-19/USA/CA-CSMC120/2020
 C203T G1296T C1779G G1835T A2396C T9546A C14564T A15992C T18402A A18564C T20694C C23929T G24350T A25531G G25726A C25803T G26393T T26679C C28311T

EPI_ISL_475598
 2020-04-05 2020-06-23
 United States hCoV-19/USA/CA-CSMC121/2020
 C241T C1059T G1942T C3037T C7721A C8251T C11758T C14408T C20767T G21533A A23403G G25563T A26057C C27864A

EPI_ISL_475599
 2020-04-05 2020-06-23
 United States hCoV-19/USA/CA-CSMC122/2020
 C241T C379A C1059T C3037T G11893T C14408T G16707T G19656T A23403G A24922G G25563T C29762G

EPI_ISL_475601
 2020-04-05 2020-06-23
 United States hCoV-19/USA/CA-CSMC124/2020
 C241T C3037T C9541T G11083T C14408T A23403G GGG28881AAC

EPI_ISL_475602
 2020-04-05 2020-06-23
 United States hCoV-19/USA/CA-CSMC125/2020
 C241T C3037T C6541T C14408T A23403G T25430C GGG28881AAC

EPI_ISL_475604
 2020-04-05 2020-06-23
 United States hCoV-19/USA/CA-CSMC127/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_475606
 2020-04-05 2020-06-23
 United States hCoV-19/USA/CA-CSMC129/2020
 C241T C1059T A2467C C3037T C14408T A23403G G25563T G26062T

EPI_ISL_475870
 2020-04-05 2020-06-25
 Austria hCoV-19/Austria/CeMM0458/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T A28169G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475897
 2020-04-05 2020-06-25
 Austria hCoV-19/Austria/CeMM0532/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A22259G A23403G G29759T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476498
 2020-04-05 2020-06-25
 Canada hCoV-19/Canada/QC_AA4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G C25433T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476513
 2020-04-05 2020-06-25
 Canada hCoV-19/Canada/QC_AS5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T GTTATG515- C882T C3037T C14408T C15324T A23403G C25433T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477818
 2020-04-05 2020-06-30
 United Kingdom hCoV-19/England/CAMB-78768/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T GAAAAGCAAGTTGAACAAAAGATCGCTGAGATTCCTAAAGAG3851- C5506T C14408T A20268G A23403G A25670G C26305T C27765T G29734C CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_478525
 2020-04-05 2020-06-30
 United Kingdom hCoV-19/England/NORT-283EFA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G431A ATG1605- G9646A C20270T C24642G A29683T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478527
 2020-04-05 2020-06-30
 United Kingdom hCoV-19/England/NORT-283F51/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478528
 2020-04-05 2020-06-30
 United Kingdom hCoV-19/England/NORT-283F60/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C28754T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478529
 2020-04-05 2020-06-30
 United Kingdom hCoV-19/England/NORT-283F7F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G9049T C14408T G15243T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480095
 2020-04-05 2020-07-01
 Japan hCoV-19/Japan/PG-0427/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G G26730A GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480096
 2020-04-05 2020-07-01
 Japan hCoV-19/Japan/PG-0429/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C241T C313T C3037T C14408T A23403G TTGCACTGACTTGCTTTAGCACTCAATTTGCTTTTGCTTGTCCTGAC27554- A28792T GGG28881AAC G29764T TCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29834-

EPI_ISL_480097
 2020-04-05 2020-07-01
 Japan hCoV-19/Japan/PG-0430/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C313T C3037T C14408T A23403G GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_480098
 2020-04-05 2020-07-01
 Japan hCoV-19/Japan/PG-0432/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G G26730A GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480099
 2020-04-05 2020-07-01
 Japan hCoV-19/Japan/PG-0433/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G G25996T GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480100
 2020-04-05 2020-07-01
 Japan hCoV-19/Japan/PG-0434/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_480101
 2020-04-05 2020-07-01
 Japan hCoV-19/Japan/PG-0435/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G G25563C G28178T GGG28881AAC C29370T A29534G ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480148
 2020-04-05 2020-07-01
 Japan hCoV-19/Japan/PG-0489/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G GGG28881AAC TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_480149
 2020-04-05 2020-07-01
 Japan hCoV-19/Japan/PG-0490/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_480150
 2020-04-05 2020-07-01
 Japan hCoV-19/Japan/PG-0491/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACT1- C241T C313T C3037T C14408T A23403G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_480163
 2020-04-05 2020-07-01
 Japan hCoV-19/Japan/PG-0504/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCT1- C241T C313T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480189
 2020-04-05 2020-07-01
 Japan hCoV-19/Japan/PG-0531/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T G1738T C3037T C4931T C14408T G16221T A17829T A23403G A26530G ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480829 MT703996
 2020-04-05 2020-07-02
 United States SARS-CoV-2/human/USA/FL-BPHL-0178/2020
 ATTAAAGGTTTATACCTTCC1- C241T C3037T C8389T C14408T A23403G T25237A G25563T G27915A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480830 MT703997
 2020-04-05 2020-07-02
 United States SARS-CoV-2/human/USA/FL-BPHL-0179/2020
 ATTAAAGGTTTATACC1- C241T C3037T C8389T C14408T A23403G G25563T G27915A ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480831 MT703998
 2020-04-05 2020-07-02
 United States SARS-CoV-2/human/USA/FL-BPHL-0180/2020
 AT1- C241T A949G C1059T C1917T C3037T C14408T A23403G G25563T TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_480832 MT703999
 2020-04-05 2020-07-02
 United States SARS-CoV-2/human/USA/FL-BPHL-0181/2020
 ATT1- C241T C1059T C1917T C3037T C14408T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_480833 MT704000
 2020-04-05 2020-07-02
 United States SARS-CoV-2/human/USA/FL-BPHL-0182/2020
 ATTAAAGGT1- C241T C1059T C1917T C3037T C14408T A23403G G25563T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_480834 MT704001
 2020-04-05 2020-07-02
 United States SARS-CoV-2/human/USA/FL-BPHL-0183/2020
 AT1- C241T C1059T C1917T C3037T C14408T A23403G G25563T C28732T ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_480836 MT704003
 2020-04-05 2020-07-02
 United States SARS-CoV-2/human/USA/FL-BPHL-0185/2020
 ATTA1- C241T C1059T C1917T C3037T C14408T A23403G G25563T TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_480837 MT704004
 2020-04-05 2020-07-02
 United States SARS-CoV-2/human/USA/FL-BPHL-0186/2020
 ATT1- C241T C1059T C1917T C3037T C14408T A23403G G25563T TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_480838 MT704005
 2020-04-05 2020-07-02
 United States SARS-CoV-2/human/USA/FL-BPHL-0187/2020
 ATTAAAG1- C241T C1059T C1917T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480839 MT704006
 2020-04-05 2020-07-02
 United States SARS-CoV-2/human/USA/FL-BPHL-0188/2020
 ATTA1- C241T C1059T C1917T C3037T C14408T A23403G G25563T TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_480840 MT704007
 2020-04-05 2020-07-02
 United States SARS-CoV-2/human/USA/FL-BPHL-0189/2020
 ATTA1- C241T C1059T C1917T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480841 MT704008
 2020-04-05 2020-07-02
 United States SARS-CoV-2/human/USA/FL-BPHL-0190/2020
 ATT1- C241T C1059T C1917T C3037T C9857T C14408T A23403G G25563T TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_480842 MT704009
 2020-04-05 2020-07-02
 United States SARS-CoV-2/human/USA/FL-BPHL-0191/2020
 ATTA1- C241T C1059T C1917T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480844 MT704011
 2020-04-05 2020-07-02
 United States SARS-CoV-2/human/USA/FL-BPHL-0193/2020
 AT1- T490A C3177T T3931C C6040T C8782T G12478A T18736C G20397T C24034T T26729C G28077C T28144C C28896G A29700G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_480845 MT704012
 2020-04-05 2020-07-02
 United States SARS-CoV-2/human/USA/FL-BPHL-0194/2020
 AT1- C241T C2416T C3037T C8109T C14408T A23403G G25563T G26233T TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_480847 MT704014
 2020-04-05 2020-07-02
 United States SARS-CoV-2/human/USA/FL-BPHL-0196/2020
 AT1- C241T C1059T C3037T G4136T C13115T C14408T G15243T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481682
 2020-04-05 2020-07-03
 Finland hCoV-19/Finland/5A10S4A10/2020
 C241T C1059T C3037T A12250T C14408T A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481683
 2020-04-05 2020-07-03
 Finland hCoV-19/Finland/5A31S4A10/2020
 C241T C1059T C3037T G9190T A12634G C14408T A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481684
 2020-04-05 2020-07-03
 Finland hCoV-19/Finland/5A34S4A10/2020
 C241T C1059T C3037T A13653G C14408T A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481685
 2020-04-05 2020-07-03
 Finland hCoV-19/Finland/5A40S4A10/2020
 C241T C1059T C3037T A12250T C14408T G21641T T22447C A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481686
 2020-04-05 2020-07-03
 Finland hCoV-19/Finland/5A44S2/2020
 C241T C313T C3037T T8278C C12213T C14408T T14655A C17934T A23403G GGG28881AAC T29401C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481687
 2020-04-05 2020-07-03
 Finland hCoV-19/Finland/5A49S4A10/2020
 C241T C1059T C3037T A12634G C14408T A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481688
 2020-04-05 2020-07-03
 Finland hCoV-19/Finland/5A4S4A10/2020
 C241T C1059T C3037T A11983G C14408T A23403G G24368T G25563T A29683G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481689
 2020-04-05 2020-07-03
 Finland hCoV-19/Finland/5A55S2/2020
 C241T C1059T C3037T G7312T C14408T A23403G A23436G G24368T G24751T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481690
 2020-04-05 2020-07-03
 Finland hCoV-19/Finland/5A57S2/2020
 C241T C3037T C6401T C14408T A23403G G28827A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481691
 2020-04-05 2020-07-03
 Finland hCoV-19/Finland/5A57S4A10/2020
 C241T C620T C1059T C3037T C14408T A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481692
 2020-04-05 2020-07-03
 Finland hCoV-19/Finland/5A71S4A10/2020
 C241T C3037T C6541T C14408T G17964A G19525A A23403G C23575T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481693
 2020-04-05 2020-07-03
 Finland hCoV-19/Finland/5A81S4A10/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481707
 2020-04-05 2020-07-03
 Finland hCoV-19/Finland/5S54S2/2020
 C241T C1059T C3037T C14408T A18153G A23403G G24368T G25563T C27406T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481751
 2020-04-05 2020-07-03
 Canada hCoV-19/Canada/NB_260/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G4006T C14408T A23403G G25563T C28606T ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_481752
 2020-04-05 2020-07-03
 Canada hCoV-19/Canada/NB_261/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_483562
 2020-04-05 2020-07-07
 Bahrain hCoV-19/Bahrein/BAH-21/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C203T G1397A G2246A C9246T G11083T G17632A C28531T T28688C G29742T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_483716
 2020-04-05 2020-07-08
 Israel hCoV-19/Israel/n14288/2020
 G1440A C1714T G2891A G4444T T10426C C11109T A22803- C23525T C29555T

EPI_ISL_483719
 2020-04-05 2020-07-08
 Israel hCoV-19/Israel/n14291/2020
 C1645- T2314- AG2491- -2513G -4017A C4565T C10369T -10528T G11083T TG13725- G14181T C14805T T17247C C17676T T19225C AAG20712- T21607- TAT22389- T22673C G26144T G26660T A27268- G28917A C29627T

EPI_ISL_487762
 2020-04-05 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5405/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C14599T C18877T A23403G G24197T G25563T C26735T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487816
 2020-04-05 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3111/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16289T C17069Y C17321Y A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487987
 2020-04-05 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB6281/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488784
 2020-04-05 2020-07-14
 United Kingdom hCoV-19/England/NORT-283E72/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C2091T G11083T C14805T T17247C G26144T G28851A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488951
 2020-04-05 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3110/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3543T C14408T C16289T A23403G G23426T G25429T C27800T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489007
 2020-04-05 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3101/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9561Y C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489014
 2020-04-05 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3132/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489031
 2020-04-05 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3108/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G188A C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489053
 2020-04-05 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3104/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489889 EPI_ISL_491085
 2020-04-05 2020-07-14
 Romania hCoV-19/Romania/ROSV_569/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A20268G A23403G A29827T TGCT29829- CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_492624
 2020-04-05 2020-07-20
 United Kingdom hCoV-19/England/BRIS-12FC33/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492635
 2020-04-05 2020-07-20
 United Kingdom hCoV-19/England/BRIS-12FC42/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2189T C2416T C3037T C14408T C14786T G20578T G22899T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492638
 2020-04-05 2020-07-20
 United Kingdom hCoV-19/England/BRIS-12FC24/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- A3569R C20270T C26735T C26801T A29683T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492809
 2020-04-05 2020-07-20
 United Kingdom hCoV-19/England/BRIS-123D4B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13501T C14408T A20268G A23403G C29545T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_494404
 2020-04-05 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1161/2020
 ATTAAAGGT1- C241T C3037T C14408T A23403G C25350T C25566T

EPI_ISL_494405
 2020-04-05 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1162/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C3037T C14408T A23403G C25350T C25566T

EPI_ISL_494406
 2020-04-05 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1164/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C14408T A23403G C25350T C25566T

EPI_ISL_494407
 2020-04-05 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1165/2020
 ATTAAAGGTTTATACCT1- C241T C3037T C4540T G4904T G5206T A6659G C14408T A23403G C24138T C25350T

EPI_ISL_499278
 2020-04-05 2020-07-28
 United Kingdom hCoV-19/England/PORT-2D1DA5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5340T T9642G C14408T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_499288
 2020-04-05 2020-07-28
 United Kingdom hCoV-19/England/PORT-2D1E84/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C19488T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_499294
 2020-04-05 2020-07-28
 United Kingdom hCoV-19/England/PORT-2D1EFD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1457T A2480G C2558T C9491T G11083T C11563T C14805T C18568T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_499296
 2020-04-05 2020-07-28
 United Kingdom hCoV-19/England/PORT-2D1F18/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C17410T C18788T T19839C G21830C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_499428
 2020-04-05 2020-07-28
 United Kingdom hCoV-19/Wales/PHWC-1692FF/2020
 ATTAAAGGTTTATACCTTC1- C241T A1547W C3037T C6990T C14408T A23403G C29200T AA29902-

EPI_ISL_500306
 2020-04-05 2020-07-28
 Spain hCoV-19/Spain/COV004242/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C3037T C14408T G17144A A23403G C24921T GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_500624
 2020-04-05 2020-07-29
 Australia hCoV-19/Australia/NSW2131/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1302T C1884T C3037T C14408T A23403G G25563T C28775T C28887T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500625
 2020-04-05 2020-07-29
 Australia hCoV-19/Australia/NSW2132/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A20577G A23403G C26681T C27903T C28854T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_507019 MT820470
 2020-04-05 2020-07-30
 Saudi Arabia SARS-CoV-2/human/SAU/KAIMRC13/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C12815T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_508132
 2020-04-05 2020-08-04
 Australia hCoV-19/Australia/SAP441/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C20762T C21575T A23403G GGG28881AAC

EPI_ISL_508982
 2020-04-05 2020-08-04
 France hCoV-19/France/ARA20073/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C241T C3037T C11130T C14408T A23403G G25563T C28807T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_508983
 2020-04-05 2020-08-04
 France hCoV-19/France/ARA20154/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAAT1- C241T C1059T C3037T C14408T G14772T C18322T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_508984
 2020-04-05 2020-08-04
 France hCoV-19/France/ARA20193/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCT1- C241T C3037T C14408T C15324T A23403G G28001T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_508985
 2020-04-05 2020-08-04
 France hCoV-19/France/ARA20254/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCA1- C241T C3037T C14408T T19839C A23403G G25552T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_511713
 2020-04-05 2020-08-08
 Portugal hCoV-19/Portugal/PT1167/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511714
 2020-04-05 2020-08-08
 Portugal hCoV-19/Portugal/PT1168/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C6312A G11083T C12439T C13730T C23929T T23986C C28311T G28368A TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511715
 2020-04-05 2020-08-08
 Portugal hCoV-19/Portugal/PT1169/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T T505C C3037T C3261T C14408T A15984T C20946T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511901
 2020-04-05 2020-08-10
 India hCoV-19/India/IK8/2020
 C7945T C8782T G22468T T28144C G28878A G29742A G29868A

EPI_ISL_513165
 2020-04-05 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH516/2020
 C241T C3037T C14408T A23403G G25563T C26735T C29095T -29867ACACGACAGCATC

EPI_ISL_513166
 2020-04-05 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH519/2020
 C241T C3037T C14408T C18877T A23403G G25563T C26735T -29867AGATGC

EPI_ISL_515197
 2020-04-05 2020-08-18
 Canada hCoV-19/Canada/QC_AA1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G C25433T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_515229
 2020-04-05 2020-08-18
 Canada hCoV-19/Canada/QC_AU3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G C25433T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_515230
 2020-04-05 2020-08-18
 Canada hCoV-19/Canada/QC_AU6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G C25433T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_517517
 2020-04-05 2020-08-24
 United Kingdom hCoV-19/England/PORT-2D2C3E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1461G G1820A C3037T C5730T G11083T C14408T G19542T A23403G G24328A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_517519
 2020-04-05 2020-08-24
 United Kingdom hCoV-19/England/PORT-2D2C6B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16289T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_520731
 2020-04-05 2020-08-25
 United Arab Emirates hCoV-19/United Arab Emirates/L920643384/2020
 C8782T G11230T C11563T T28144C G28167A G28878A G29742A

EPI_ISL_522767 MT973426
 2020-04-05 2020-08-26
 Australia SARS-CoV-2/human/AUS/TAS97/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C4540T A4624G C8782T T9477A C14805T G25979T G26062T T28144C C28311T C28657T C28863T TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_524572
 2020-04-05 2020-08-28
 United Kingdom hCoV-19/Scotland/GCVR-173043/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C22879A A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524640
 2020-04-05 2020-08-28
 United Kingdom hCoV-19/England/LOND-126085C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2563G G11083T C14805T C16887T C23707T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524691
 2020-04-05 2020-08-28
 United Kingdom hCoV-19/England/LOND-12607C8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2164A C3037T C8290T C14408T A23403G G25647T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524692
 2020-04-05 2020-08-28
 United Kingdom hCoV-19/England/LOND-126082F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C6927Y C14352T C14408T G17523T C21910T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524698
 2020-04-05 2020-08-28
 United Kingdom hCoV-19/England/LOND-1260810/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524699
 2020-04-05 2020-08-28
 United Kingdom hCoV-19/England/LOND-126086B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4832T C14408T A23403G T23849C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524700
 2020-04-05 2020-08-28
 United Kingdom hCoV-19/England/LOND-12607E6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241Y C3037Y T10942W G11083K G11634K C14408Y C14786Y C14805Y A19515R A23403R G26144K G28842K GGG28881RRS C29013Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524710
 2020-04-05 2020-08-28
 United Kingdom hCoV-19/England/LOND-126079B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A11537G C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525653
 2020-04-05 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-38698-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C1420T C1684T A2165G C3037T G13425A C14408T A23403G G25563T G29711T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_525659
 2020-04-05 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-41107-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C4965T C10833T C14408T C18131T A23403G G25563T C29028T TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_527055
 2020-04-05 2020-09-03
 Australia hCoV-19/Australia/NSW2562/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_527056
 2020-04-05 2020-09-03
 Australia hCoV-19/Australia/NSW2563/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_527710
 2020-04-05 2020-09-04
 United States hCoV-19/USA/MN-CDC-6495/2020
 C241T C3037T C14408T C21707T A23403G A26530G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_530057
 2020-04-05 2020-09-10
 Spain hCoV-19/Spain/MD-LP54/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8175T C14408T C18828T A20268G A23403G ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_530219 MT997741
 2020-04-05 2020-09-10
 United States SARS-CoV-2/human/USA/MN-MDH-1623/2020
 ATTAAAGGTTT1- C241T C1059T G1463A C3037T G7557A C8818T C14408T A23403G G25563T C29803T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_530237
 2020-04-05 2020-09-11
 Australia hCoV-19/Australia/QLD974/2020/P1
 ATTA1- T10G C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T

EPI_ISL_534811
 2020-04-05 2020-09-14
 United Kingdom hCoV-19/England/OXON-B2D33/2020
 C241T C3037T C14408T A23403G G25429T

EPI_ISL_534901
 2020-04-05 2020-09-14
 United Kingdom hCoV-19/England/OXON-B3B29/2020
 C241T C2142T C3037T C14408T C18814T C19170T G19509A A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_536414
 2020-04-05 2020-09-16
 Singapore hCoV-19/Singapore/873/2020
 ATTAAAGG1- C6310A C6312A A9419G G11083T C13730T C19524T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_537296
 2020-04-05 2020-09-16
 Spain hCoV-19/Spain/CL-CSIC-97006149/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T T6294C T6971C G9929A C14408T A15325G G15556R A20268G A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_537301
 2020-04-05 2020-09-16
 Spain hCoV-19/Spain/CL-CSIC-97006154/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T T6294C G9929A C14408T A15325G A20268G A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_537313
 2020-04-05 2020-09-16
 Spain hCoV-19/Spain/CL-CSIC-97006166/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C1912Y C3037T T6294C G9929A C14408T A15325G A20268G A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_537724
 2020-04-05 2020-09-16
 Spain hCoV-19/Spain/CN-CSIC-97006519/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T AAGTCATTT686- T1147Y C3037T C14408T T18209C A20268G A23403G A27675C G29734C AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_538369
 2020-04-05 2020-09-16
 Canada hCoV-19/Canada/ON-OICR-SLB2849/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2416T C3037T T4537C C8047T C14408T A23403G G25563T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_538370
 2020-04-05 2020-09-16
 Canada hCoV-19/Canada/ON-OICR-SLB2851/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2416T C3037T C14408T A23403G G25563T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_538478
 2020-04-05 2020-09-17
 Singapore hCoV-19/Singapore/944/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6310A C6312A G11083T C13730T C19524T C23185T C23929T C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538479
 2020-04-05 2020-09-17
 Singapore hCoV-19/Singapore/945/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C3261T C6310A C6312A G11083T C13730T C19524T C23929T C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538804
 2020-04-05 2020-09-17
 United Kingdom hCoV-19/England/LEED-2AA3A3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538807
 2020-04-05 2020-09-17
 United Kingdom hCoV-19/England/LEED-2AA1A9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3486T C14408T C18657T C19029T A20268G A23403G C27442T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538827
 2020-04-05 2020-09-17
 United Kingdom hCoV-19/England/LEED-2AA26A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T C14408T G21724T C22326T A23403G G23587C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538897
 2020-04-05 2020-09-17
 United Kingdom hCoV-19/England/LEED-2AA376/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T C13115Y C14408T C18981T G21724T C22326T A23403G G23587C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538905
 2020-04-05 2020-09-17
 United Kingdom hCoV-19/England/LEED-2AA640/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1820R C3037T C14408T A23403G G25471T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538926
 2020-04-05 2020-09-17
 United Kingdom hCoV-19/England/LEED-2AA25B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538952
 2020-04-05 2020-09-17
 United Kingdom hCoV-19/England/LEED-2AA76B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4795T C8832Y A10505G C10507T C12623T T13678C C14408T C21997Y A23403G C27046T GGG28881AAC A28910C C29627T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538958
 2020-04-05 2020-09-17
 United Kingdom hCoV-19/England/LEED-2AA75C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C14408T C14688T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539020
 2020-04-05 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8CB9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C5284T C6027T A10236G G11083T C14805T T17247C G22319A G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539026
 2020-04-05 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8985/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3230A C6449T C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539043
 2020-04-05 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8F65/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6445T T10696Y G10846A G11083T C14805T T17247C C20132T G20274T G25742A G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539071
 2020-04-05 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8F56/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C14408T A20268G A23403G A24129R C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539084
 2020-04-05 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A90AD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3230A C6449T C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539093
 2020-04-05 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8FB0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3230A C6449T C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539108
 2020-04-05 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8FDE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6312A A10948G C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539128
 2020-04-05 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8C04/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1778C C3037T C3990T C8389T G10805A C14408T A23403G C23453T G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539135
 2020-04-05 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8CAA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T4096C C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539198
 2020-04-05 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A93C2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T9157Y C14408T T15522C A17039G T17835C A23403G C23481Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539212
 2020-04-05 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A926B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3230A C6449T C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539300
 2020-04-05 2020-09-17
 Belgium hCoV-19/env/Belgium/VAN-93030-I/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T10933C G11083T A23403G GGG28881AAC G29587T G29751K TGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29829-

EPI_ISL_539301
 2020-04-05 2020-09-17
 Belgium hCoV-19/env/Belgium/VAN-93030-N/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G ATGCAGACCACACAAGGCAGATGGGCTATATAAACGTTTTCGCTTTTCCGTTTACGATATATAGTCTACTCTTGTGCAGAATGAATTCTCGTAACTACATAGCACAAGTAGATGTAGTTAACTTTAATCTCACATAGCAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29538-

EPI_ISL_540431 MW023390
 2020-04-05 2020-09-21
 United States SARS-CoV-2/human/USA/IN-CDC-0821/2020
 C241T C3037T C14408T G21123K A23403G G26158T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_541351
 2020-04-05 2020-09-22
 Brazil hCoV-19/Brazil/RJ-1870/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- A187G C241T C3037T C14408T A23403G TCTCTA25707- GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_541848
 2020-04-05 2020-09-23
 Lithuania hCoV-19/Lithuania/MR-LUHS-Eilnr11/2020
 A1- C241T C3037T C14408T A23403G C23575T G23587C GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_541849
 2020-04-05 2020-09-23
 Lithuania hCoV-19/Lithuania/MR-LUHS-Eilnr12/2020
 A1- A2810G C15324T T21644C C29303T AAAAA29899-

EPI_ISL_541850
 2020-04-05 2020-09-23
 Lithuania hCoV-19/Lithuania/MR-LUHS-Eilnr14/2020
 ATTAA1- A2810G C15324T T21644C C29303T TATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29832-

EPI_ISL_541851
 2020-04-05 2020-09-23
 Lithuania hCoV-19/Lithuania/MR-LUHS-Eilnr17/2020
 A1- A2810G C15324T T21644C C29303T C29421T AAAAAAAAAAAAAA29890-

EPI_ISL_542495
 2020-04-05 2020-09-23
 United States hCoV-19/USA/TX-HMH-1016/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T A1230G C3037T G10106T C11916T C14408T A23403G G25563T G28198T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542498
 2020-04-05 2020-09-23
 United States hCoV-19/USA/TX-HMH-1024/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G3685A C10319T C14408T C17123T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542500
 2020-04-05 2020-09-23
 United States hCoV-19/USA/TX-HMH-1026/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C12312T C14408T A18082G A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542502
 2020-04-05 2020-09-23
 United States hCoV-19/USA/TX-HMH-1035/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T A2404G C3037T A6677G C10969T C11916T C14408T A14463G C18998T A20553G A23403G G25563T C25916T G29540A G29587A CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_542507
 2020-04-05 2020-09-23
 United States hCoV-19/USA/TX-HMH-1046/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G3471T C10377T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542510
 2020-04-05 2020-09-23
 United States hCoV-19/USA/TX-HMH-1056/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G18534A A23403G G25563T T27384C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542521
 2020-04-05 2020-09-23
 United States hCoV-19/USA/TX-HMH-1074/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3784T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544360
 2020-04-05 2020-09-24
 United States hCoV-19/USA/TX-HMH-483/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544392
 2020-04-05 2020-09-24
 United States hCoV-19/USA/TX-HMH-487/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544398
 2020-04-05 2020-09-24
 United States hCoV-19/USA/TX-HMH-488/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544406
 2020-04-05 2020-09-24
 United States hCoV-19/USA/TX-HMH-489/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544407
 2020-04-05 2020-09-24
 United States hCoV-19/USA/TX-HMH-490/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544408
 2020-04-05 2020-09-24
 United States hCoV-19/USA/TX-HMH-491/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544409
 2020-04-05 2020-09-24
 United States hCoV-19/USA/TX-HMH-492/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544415
 2020-04-05 2020-09-24
 United States hCoV-19/USA/TX-HMH-494/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544424
 2020-04-05 2020-09-24
 United States hCoV-19/USA/TX-HMH-495/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544656
 2020-04-05 2020-09-24
 United States hCoV-19/USA/TX-HMH-529/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G2808A C3037T C14408T A23403G G25563T A26433G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545855
 2020-04-05 2020-09-24
 United States hCoV-19/USA/TX-HMH-823/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C16260T A23403G G25563T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545868
 2020-04-05 2020-09-24
 United States hCoV-19/USA/TX-HMH-848/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G3901A C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545878
 2020-04-05 2020-09-24
 United States hCoV-19/USA/TX-HMH-861/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G18055A G19525T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545879
 2020-04-05 2020-09-24
 United States hCoV-19/USA/TX-HMH-862/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T C20698T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545883
 2020-04-05 2020-09-24
 United States hCoV-19/USA/TX-HMH-866/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C11866T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545884
 2020-04-05 2020-09-24
 United States hCoV-19/USA/TX-HMH-867/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10188T C11962T C14408T A23403G T24982C G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549006
 2020-04-05 2020-09-28
 Belgium hCoV-19/env/Belgium/VBR-93034-N/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A11839G C14408T A23403G GGG28881AAC ACAAGGCAGATGGGCTATATAAACGTTTTCGCTTTTCCGTTTACGATATATAGTCTACTCTTGTGCAGAATGAATTCTCGTAACTACATAGCACAAGTAGATGTAGTTAACTTTAATCTCACATAGCAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29549-

EPI_ISL_549007
 2020-04-05 2020-09-28
 Belgium hCoV-19/env/Belgium/VOV-93032-N/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C19170T G19509A T19839C ACAAGGCAGATGGGCTATATAAACGTTTTCGCTTTTCCGTTTACGATATATAGTCTACTCTTGTGCAGAATGAATTCTCGTAACTACATAGCACAAGTAGATGTAGTTAACTTTAATCTCACATAGCAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29549-

EPI_ISL_560756
 2020-04-05 2020-09-29
 United States hCoV-19/USA/MN-MDH-1669/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25563T C29269T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_560757
 2020-04-05 2020-09-29
 United States hCoV-19/USA/MN-MDH-1670/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C3037T C14408T C21707T A23403G A26530G CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_560758
 2020-04-05 2020-09-29
 United States hCoV-19/USA/MN-MDH-1671/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G24368T G25563T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_569524
 2020-04-05 2020-10-02
 France hCoV-19/France/IHU-0459/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T C7843T G8371T C14408T A23403G G25563T G25909T C28399T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569525
 2020-04-05 2020-10-02
 France hCoV-19/France/IHU-0460/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T G8371T C9886T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569526
 2020-04-05 2020-10-02
 France hCoV-19/France/IHU-0461/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1059T T1666C C3037T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569527
 2020-04-05 2020-10-02
 France hCoV-19/France/IHU-0462/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T C6330T G8371T C14408T A23403G G25563T ATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29725-

EPI_ISL_569528
 2020-04-05 2020-10-02
 France hCoV-19/France/IHU-0464/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1059T C3037T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569529
 2020-04-05 2020-10-02
 France hCoV-19/France/IHU-0465/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1059T C3037T G11083T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569530
 2020-04-05 2020-10-02
 France hCoV-19/France/IHU-0466/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T G8371T C14408T A23403G G25563T G29422T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569531
 2020-04-05 2020-10-02
 France hCoV-19/France/IHU-0467/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T G8371T C14408T G19969T A23403G G25563T G26718T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569532
 2020-04-05 2020-10-02
 France hCoV-19/France/IHU-0468/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T C3984T G8371T C14408T A23403G G25166C G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569533
 2020-04-05 2020-10-02
 France hCoV-19/France/IHU-0469/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T C7267T G8371T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569534
 2020-04-05 2020-10-02
 France hCoV-19/France/IHU-0470/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569535
 2020-04-05 2020-10-02
 France hCoV-19/France/IHU-0471/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2189T C3037T G4105T C14408T C15324T A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569536
 2020-04-05 2020-10-02
 France hCoV-19/France/IHU-0472/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T T2578C C3037T C6401T C13105T C13458T C14408T C20946T A23403G G25563T AGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29799-

EPI_ISL_569537
 2020-04-05 2020-10-02
 France hCoV-19/France/IHU-0473/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C203T C241T C2416T C3037T G8371T C14408T C14877T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

MT810631
 2020-04-05 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1161-CS2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A23403G C25350T C25566T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810632
 2020-04-05 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1162-CS2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A23403G C25350T C25566T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810633
 2020-04-05 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1164-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A23403G C25350T C25566T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810634
 2020-04-05 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1165-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C4540T G4904T G5206T A6659G C14408T A23403G C24138T C25350T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810987
 2020-04-05 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0367-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- A1096G C1420T C3037T C14408T G14874T C18877T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810989
 2020-04-05 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0369-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811017
 2020-04-05 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0411-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811745
 2020-04-05 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0324-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T A23403G G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT873163
 2020-04-05 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00178/2020
 C241T C2416T C3037T T6394G C14408T A23403G G25563T G26233T

MT873409
 2020-04-05 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00177/2020
 C241T C2416T C3037T C14408T A23403G G25563T G26233T

MT967966
 2020-04-05 2020-09-04
 United States SARS-CoV-2/human/USA/MN-CDC-6495/2020
 C241T C3037T C14408T C21707T A23403G A26530G AAAAAAAAAAAAAAAAAAAAA29883-

NMDC60013155
 2020-04-05 2020-06-01
 China hCoV-19/Guangzhou/ID146/2020
 ATTAAAGGTTTATACCTTCC1- C241T C3037T C14408T C15324T C19524T A23403G G29175A G29868A

EPI_ISL_418624
 2020-04-06 2020-03-30
 Belgium hCoV-19/Belgium/ULG-6972/2020/P1
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4255T C14408T A23403G A26530G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420544
 2020-04-06 2020-04-06
 India hCoV-19/India/2020763/2020
 C241T C3037T C4809T C14408T A23403G

EPI_ISL_420546
 2020-04-06 2020-04-06
 India hCoV-19/India/2020770/2020
 A1- C241T C3037T C4809T C14408T A23403G

EPI_ISL_420548
 2020-04-06 2020-04-06
 India hCoV-19/India/2020772/2020
 ATTA1- C241T C3037T C4809T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_420550
 2020-04-06 2020-04-06
 India hCoV-19/India/2020773/2020
 AT1- C241T C3037T C4809T C14408T A23403G AAAAAAAAAAAAAAA29889-

EPI_ISL_420552
 2020-04-06 2020-04-06
 India hCoV-19/India/2020777/2020
 C241T C3037T C4809T C14408T A23403G AAAAAAAAAAA29893-

EPI_ISL_420554
 2020-04-06 2020-04-06
 India hCoV-19/India/2020781/2020
 ATTAAAGGTTT1- C241T C3037T C4809T C14408T A23403G A29885G AAAAAAAAAA29894-

EPI_ISL_420556
 2020-04-06 2020-04-06
 India hCoV-19/India/2020c32/2020
 C241T C313T C3037T C14408T A23403G GGG28881AAC AAAAAA29898-

EPI_ISL_422463
 2020-04-06 2020-04-10
 United States hCoV-19/USA/WI-GMF-00588/2020
 C241T C1059T C3037T C11224T C14408T C15654T A23403G G25563T

EPI_ISL_424629
 2020-04-06 2020-04-13
 Belgium hCoV-19/Belgium/ULG-10066/2020
 C66T C241T C3037T C7851T C14408T A23403G GGG28881AAC

EPI_ISL_424636
 2020-04-06 2020-04-13
 Belgium hCoV-19/Belgium/ULG-10068/2020
 C241T G1487A C3037T C12452T C14408T C20132T A23403G GGG28881AAC

EPI_ISL_424637
 2020-04-06 2020-04-13
 Belgium hCoV-19/Belgium/ULG-10078/2020
 C241T C1059T C3037T C14408T A23403G C23679T G25563T G28857A

EPI_ISL_426159
 2020-04-06 2020-04-15
 United States hCoV-19/USA/WI-GMF-00986/2020
 C241T C1059T C3037T C6781T C11224T C14408T C15654T A23403G G25563T

EPI_ISL_426161
 2020-04-06 2020-04-15
 United States hCoV-19/USA/WI-GMF-00928/2020
 C241T A739G C1059T C2933T C3037T C9866T C12400T C14408T A14747G A20755C A23403G G25563T

EPI_ISL_426627
 2020-04-06 2020-04-17
 United States hCoV-19/USA/LA-BIE-096/2020
 C241T C1059T G2528A C3037T C10319T C11674T C14408T G18281T A23403G G25563T C27964T

EPI_ISL_426628
 2020-04-06 2020-04-17
 United States hCoV-19/USA/LA-BIE-097/2020
 C241T G598T C1059T C3037T C9443T T11121C C14408T A23403G G25563T C27964T

EPI_ISL_427133 MT641710
 2020-04-06 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC878/2020
 C1076T G1397A C9491T G11083T C21658T C27964T T28688C C29420T G29742T

EPI_ISL_427134 MT451616
 2020-04-06 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC879/2020
 C1076T G1397A C9491T G11083T C21658T C27964T T28688C C29420T G29742T

EPI_ISL_427135 MT451618
 2020-04-06 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC881/2020
 C241T G1145A C3037T C14408T A23403G G27906T GGG28881AAC

EPI_ISL_427136
 2020-04-06 2020-04-17
 Australia hCoV-19/Australia/VIC883/2020
 C241T C1059T C3037T G4444T GATAATCTT6374- T13006C C14408T A23403G G25563T C25688T

EPI_ISL_427137 MT451619
 2020-04-06 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC884/2020
 C241T C3037T C14408T A23403G TAGGGGAACTTCTCCTGC28879-

EPI_ISL_427139 MT451621
 2020-04-06 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC886/2020
 T490A C3177T C6285T C8782T C15960T T18736C G19684T C24034T C27635T G28077C T28144C A29700G

EPI_ISL_427323
 2020-04-06 2020-04-18
 Russia hCoV-19/Russia/StPetersburg-RII4678S/2020
 C3037T A6248G C14408T A20268G A23403G

EPI_ISL_427351
 2020-04-06 2020-04-18
 Belgium hCoV-19/Belgium/ULG-10100/2020
 C241T A618G C3037T G3994A C5694T C14408T C15324T C18744T A23403G

EPI_ISL_427354
 2020-04-06 2020-04-18
 Belgium hCoV-19/Belgium/ULG-10103/2020
 C241T C2113T C3037T C5144T C7765T C14408T C17690T C18877T A23403G G25563T G29266T

EPI_ISL_427451
 2020-04-06 2020-04-18
 United States hCoV-19/USA/WI-UW-144/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C335T C3037T C14408T C18877T A23403G A24862G G25563T A29731T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_427459
 2020-04-06 2020-04-18
 United States hCoV-19/USA/WI-UW-152/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11417T T14073C C14408T A23403G A23947G G25981A G28539T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_427630
 2020-04-06 2020-04-19
 United States hCoV-19/USA/NY-NYUMC230/2020
 C241T C619T C1059T C3037T C14408T A14912G A23403G G25563T

EPI_ISL_427631
 2020-04-06 2020-04-19
 United States hCoV-19/USA/NY-NYUMC231/2020
 C241T G991A C1059T C3037T C11916T C14408T C18998T A20553G A23403G G25563T G29540A

EPI_ISL_427632
 2020-04-06 2020-04-19
 United States hCoV-19/USA/NY-NYUMC232/2020
 C241T C2455T C3037T C10335T C14408T C18877T G23270A A23403G G25563T

EPI_ISL_427633
 2020-04-06 2020-04-19
 United States hCoV-19/USA/NY-NYUMC233/2020
 C241T C1059T C3037T C14408T C16260T A23403G G25563T C28821A

EPI_ISL_427634
 2020-04-06 2020-04-19
 United States hCoV-19/USA/NY-NYUMC235/2020
 C241T C3037T C6255T C12171T C14408T C18877T A23403G G25563T TA29760-

EPI_ISL_427637
 2020-04-06 2020-04-19
 United States hCoV-19/USA/NY-NYUMC238/2020
 C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_427638
 2020-04-06 2020-04-19
 United States hCoV-19/USA/NY-NYUMC239/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_427639
 2020-04-06 2020-04-19
 United States hCoV-19/USA/NY-NYUMC240/2020
 C241T C1059T C3037T C7764T C14408T G16365T A23403G G25563T

EPI_ISL_427641
 2020-04-06 2020-04-19
 United States hCoV-19/USA/NY-NYUMC242/2020
 C241T C1059T C3037T C14408T C16650A A23403G G25563T

EPI_ISL_427642
 2020-04-06 2020-04-19
 United States hCoV-19/USA/NY-NYUMC234/2020
 C241T C1059T C3037T C6926T C11916T C14408T C18998T A23403G G25563T G27762- G29540A

EPI_ISL_428730
 2020-04-06 2020-04-21
 United States hCoV-19/USA/WI-UW-256/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C28674T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428731
 2020-04-06 2020-04-21
 United States hCoV-19/USA/WI-UW-257/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T15354C C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428732
 2020-04-06 2020-04-21
 United States hCoV-19/USA/WI-UW-258/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3259T G10805A C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428777
 2020-04-06 2020-04-22
 United States hCoV-19/USA/NY-NYUMC263/2020
 C8078T G10754A G11083T C14805T T15129C T17247C G26144T

EPI_ISL_428778
 2020-04-06 2020-04-22
 United States hCoV-19/USA/NY-NYUMC264/2020
 C241T C1059T C3037T C11916T C14408T C18998T T22672C A23403G G25563T G29540A

EPI_ISL_428779
 2020-04-06 2020-04-22
 United States hCoV-19/USA/NY-NYUMC265/2020
 C241T C3037T T5593C A10323G C14408T A23403G

EPI_ISL_428780
 2020-04-06 2020-04-22
 United States hCoV-19/USA/NY-NYUMC266/2020
 C241T C1059T C3037T A4305G C14408T A23403G G25563T G29392T

EPI_ISL_428781
 2020-04-06 2020-04-22
 United States hCoV-19/USA/NY-NYUMC267/2020
 C241T C3037T C14408T A23403G G25563T

EPI_ISL_428783
 2020-04-06 2020-04-22
 United States hCoV-19/USA/NY-NYUMC269/2020
 C241T C1059T C1594T C3037T C11916T C11956T C14408T A23403G G25563T

EPI_ISL_428784
 2020-04-06 2020-04-22
 United States hCoV-19/USA/NY-NYUMC270/2020
 C241T C3037T C14408T C18877T A23403G G25563T

EPI_ISL_428785
 2020-04-06 2020-04-22
 United States hCoV-19/USA/NY-NYUMC271/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_428786
 2020-04-06 2020-04-22
 United States hCoV-19/USA/NY-NYUMC272/2020
 C241T C1059T C3037T C14408T T15539C A23403G G25563T T27384C

EPI_ISL_428787
 2020-04-06 2020-04-22
 United States hCoV-19/USA/NY-NYUMC273/2020
 C241T C1059T C3037T C5884T C6449T C10376T G11926A C13487T C14408T C22858T A23403G G25563T

EPI_ISL_428788
 2020-04-06 2020-04-22
 United States hCoV-19/USA/NY-NYUMC274/2020
 C241T C1059T C3037T C14408T A23403G G25563T C26447T C29754T

EPI_ISL_428789
 2020-04-06 2020-04-22
 United States hCoV-19/USA/NY-NYUMC275/2020
 C241T C1059T C3037T G7560A C10556T C14408T C21221T A23403G G25563T

EPI_ISL_428790
 2020-04-06 2020-04-22
 United States hCoV-19/USA/NY-NYUMC276/2020
 C241T C3037T C14408T A23403G G25563T

EPI_ISL_428804
 2020-04-06 2020-04-22
 United States hCoV-19/USA/NY-NYUMC290/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_428805
 2020-04-06 2020-04-22
 United States hCoV-19/USA/NY-NYUMC291/2020
 C241T C1059T C3037T C6813T C14408T A23403G G25563T

EPI_ISL_429217
 2020-04-06 2020-04-23
 Switzerland hCoV-19/Switzerland/GE6414/2020
 ATTAAAG1- C241T C3037T A9946G C9979T C14408T T19839C A23403G GGG28881AAC

EPI_ISL_429220
 2020-04-06 2020-04-23
 Switzerland hCoV-19/Switzerland/GE6065/2020
 ATT1- C241T G1599T C3037T C8293T C14408T T18488C A23403G T24739C A26530G

EPI_ISL_429221
 2020-04-06 2020-04-23
 Switzerland hCoV-19/Switzerland/GE6099/2020
 AT1- C241T C3037T T8682C C14408T T19839C A21556G A23403G GGG28881AAC

EPI_ISL_429628 MT375457
 2020-04-06 2020-04-23
 United States SARS-CoV-2/human/USA/UNKNOWN-UW-4645/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCA1- C4456T A6693G C8782T C14877T C17747T A17858G C18060T T27228A T28144C A29188T -29904AAAAAAAAAAA

EPI_ISL_429629 MT375458
 2020-04-06 2020-04-23
 United States SARS-CoV-2/human/USA/WA-UW-4649/2020
 ATTA1- C241T C1059T C3037T C5694A C6040T G12071A C14408T C18131T C20081T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_429631 MT375460
 2020-04-06 2020-04-23
 United States SARS-CoV-2/human/USA/WA-UW-4695/2020
 ATTAAAGGTTTATACC1- C36T C241T C1059T C3037T C14408T A23403G G25563T G29553A AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_429632 MT375461
 2020-04-06 2020-04-23
 United States SARS-CoV-2/human/USA/WA-UW-4705/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C3037T C14408T A23403G G25563T -29904AAAAAAAAAAAAA

EPI_ISL_429641 MT375470
 2020-04-06 2020-04-23
 United States SARS-CoV-2/human/USA/CT-UW-5038/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAAC19- C37T C241T C1059T C3037T C14408T C21552T A23403G G25563T T25733G

EPI_ISL_429642 MT375471
 2020-04-06 2020-04-23
 United States SARS-CoV-2/human/USA/CT-UW-5043/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAG1- C1059T C3037T C6026T C14408T A23403G G25563T C28836T -29904AAAAAAAAA

EPI_ISL_429645 MT375474
 2020-04-06 2020-04-23
 United States SARS-CoV-2/human/USA/CT-UW-5073/2020
 ATTAAAGGTTTAT1- C241T C3037T C14408T C18877T A23403G G25563T T27810C

EPI_ISL_429848
 2020-04-06 2020-04-24
 United States hCoV-19/USA/WI-GMF-01316/2020
 C241T A739G C1059T C2933T C3037T C9866T C12400T C14408T A14747G A20755C A23403G G25563T

EPI_ISL_429982 MT415905
 2020-04-06 2020-04-24
 United States SARS-CoV-2/human/USA/VA-DCLS-0084/2020
 ATTAAAGG1- C241T C1059T C3037T T3607C C8980T C14408T C14925T G18653T A23403G G25563T

EPI_ISL_430579 MT451733
 2020-04-06 2020-04-27
 Australia SARS-CoV-2/human/AUS/VIC1080/2020
 C241T C1059T C3037T T8068C C14408T G16221A A23083G A23403G G25563T

EPI_ISL_430597 MT451736
 2020-04-06 2020-04-27
 Australia SARS-CoV-2/human/AUS/VIC1086/2020
 C241T C3037T T7438C C14408T A23403G C29353T

EPI_ISL_430914 MT412271
 2020-04-06 2020-04-28
 United States SARS-CoV-2/human/USA/WA-UW-5732/2020
 ATTAAA1- C36T C241T C1059T C3037T C14408T A23403G G25563T C26907T G28079T T29867H C29870A -29904AA

EPI_ISL_430918 MT412275
 2020-04-06 2020-04-28
 United States SARS-CoV-2/human/USA/WA-UW-5750/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A31W C36T G1820A C5784T C8782T C17747T A17858G C18060T C20930T G26730A T28144C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_430921 MT412278
 2020-04-06 2020-04-28
 United States SARS-CoV-2/human/USA/CT-UW-5757/2020
 AT1GA A4T A31T AAC34TTT C241T C1059T C3037T C10851T C14408T G16975T A23403G G25563T

EPI_ISL_432216
 2020-04-06 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-2AF03/2020
 A1- C241T C3037T G10097A C14206Y C14408T C17678T C21575T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_432345
 2020-04-06 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-2ADFA/2020
 AT1- C241T C3037T T3100G G10097A C13584T C14408T A23403G C23731T G25947T GGG28881AAC

EPI_ISL_432570
 2020-04-06 2020-04-29
 United Kingdom hCoV-19/England/SHEF-CE89D/2020
 C241T C3037T C14408T C21614T A23403G

EPI_ISL_432875
 2020-04-06 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB910/2020
 C241T C3037T A3911G C14408T A23403G C26028T

EPI_ISL_432891
 2020-04-06 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB964/2020
 C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_432892
 2020-04-06 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB971/2020
 C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_432895
 2020-04-06 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB986/2020
 C241T C313T C3037T T3268C C13046T C14408T A23403G GGG28881AAC

EPI_ISL_432898
 2020-04-06 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB997/2020
 C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_432899
 2020-04-06 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB999/2020
 C241T C3037T C3425T C14408T G17721T A20268G A23403G

EPI_ISL_433374
 2020-04-06 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1001/2020
 C241T C1377T C3037T C14408T C16289T A23403G G25429T G28077T

EPI_ISL_433375
 2020-04-06 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1005/2020
 C4467T C8782T C17470T C26088T

EPI_ISL_433376
 2020-04-06 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1037/2020
 G714A A2480G C2558T G11083T C14805T G26144T

EPI_ISL_433377
 2020-04-06 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1040/2020
 C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_433378
 2020-04-06 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1046/2020
 C241T C3037T C14408T A20268G A23403G

EPI_ISL_433379
 2020-04-06 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1062/2020
 C241T C3037T C14408T A23403G C25433T

EPI_ISL_433380
 2020-04-06 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1070/2020
 C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_433381
 2020-04-06 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1071/2020
 C241T C3037T C12923T C14408T A23403G T23590C C25096T C25782T GGG28881AAC

EPI_ISL_433382
 2020-04-06 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1072/2020
 C241T C3037T A8072G C14408T A23403G GGG28881AAC

EPI_ISL_433383
 2020-04-06 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1073/2020
 A187G C241T C3037T C14408T A23403G

EPI_ISL_433399
 2020-04-06 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1109/2020
 C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_433400
 2020-04-06 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1110/2020
 C241T C3037T C10798A C13862T C14408T A23403G C28836T

EPI_ISL_433401
 2020-04-06 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1111/2020
 C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_433402
 2020-04-06 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1112/2020
 C241T C3037T C14408T C18877T A23403G G24197T G25563T C26735T

EPI_ISL_433403
 2020-04-06 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1113/2020
 C241T C3037T C6573T C14408T A23403G C25528T G27715T GGG28881AAC

EPI_ISL_433405
 2020-04-06 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1117/2020
 C241T C3037T C14408T A23403G C23679T C25433T

EPI_ISL_433406
 2020-04-06 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1118/2020
 C241T C3037T A3911G C14408T A23403G C26028T

EPI_ISL_433641
 2020-04-06 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR1644/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_433643
 2020-04-06 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR1652/2020
 C241T C3037T C11003T C14408T A20268G A23403G G29734C

EPI_ISL_433648
 2020-04-06 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR1673/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G26615T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_433658
 2020-04-06 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR1751/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_433738
 2020-04-06 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7849E/2020
 C241T C3037T G10870T C14408T C14805T A23403G GGG28881AAC

EPI_ISL_433742
 2020-04-06 2020-04-29
 United Kingdom hCoV-19/England/CAMB-784DA/2020
 C241T C913T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_433751
 2020-04-06 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7859B/2020
 C241T C3037T C14408T A23403G G25429T

EPI_ISL_433755
 2020-04-06 2020-04-29
 United Kingdom hCoV-19/England/CAMB-785F5/2020
 C241T C3037T C14408T C21077T A23403G GGG28881AAC

EPI_ISL_433759
 2020-04-06 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7866B/2020
 G160T C241T C3037T C13862T C14408T T17565C A23403G G26529T C28836T

EPI_ISL_433760
 2020-04-06 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7867A/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_433761
 2020-04-06 2020-04-29
 United Kingdom hCoV-19/England/CAMB-78689/2020
 C241T C1059T C3037T C9286T C14408T A23403G G25563T G28899C

EPI_ISL_433763
 2020-04-06 2020-04-29
 United Kingdom hCoV-19/England/CAMB-786C5/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_433767
 2020-04-06 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7873B/2020
 C241T C3037T C14408T C21077T A23403G T27407C A28381T GGG28881AAC

EPI_ISL_433768
 2020-04-06 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7874A/2020
 C241T C3037T C5239T C14408T A23403G C27879T GGG28881AAC

EPI_ISL_433780
 2020-04-06 2020-04-29
 United Kingdom hCoV-19/England/CAMB-78847/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_433781
 2020-04-06 2020-04-29
 United Kingdom hCoV-19/England/CAMB-78865/2020
 A2480G C2558T G4185A C9474T G11083T A11590G C14805T C23271T C24795T G26144T C29013T

EPI_ISL_433782
 2020-04-06 2020-04-29
 United Kingdom hCoV-19/England/CAMB-78874/2020
 C241T C3037T C14408T C18568T A23403G C25831T GGG28881AAC

EPI_ISL_433783
 2020-04-06 2020-04-29
 United Kingdom hCoV-19/England/CAMB-78883/2020
 C241T C3037T C14408T G21867T A23403G GGG28881AAC

EPI_ISL_433785
 2020-04-06 2020-04-29
 United Kingdom hCoV-19/England/CAMB-788A1/2020
 C241T C3037T C6573T C9474T C14408T A23403G C25528T GGG28881AAC

EPI_ISL_433787
 2020-04-06 2020-04-29
 United Kingdom hCoV-19/England/CAMB-788CF/2020
 C241T C3037T C14408T G17014T C18189T A23403G GGG28881AAC

EPI_ISL_433793
 2020-04-06 2020-04-29
 United Kingdom hCoV-19/England/CAMB-78935/2020
 C241T C3037T C14408T G16206T G19455A A23403G GGG28881AAC

EPI_ISL_433794
 2020-04-06 2020-04-29
 United Kingdom hCoV-19/England/CAMB-78944/2020
 C241T T1294C C3037T C14408T A23403G G27008T GGG28881AAC -29686C

EPI_ISL_433800
 2020-04-06 2020-04-29
 United Kingdom hCoV-19/England/CAMB-789AE/2020
 C241T C1150T C3037T C14408T A20268G C22295T A23403G C25318T G29734C

EPI_ISL_433801
 2020-04-06 2020-04-29
 United Kingdom hCoV-19/England/CAMB-789BD/2020
 C8293T G11083T C13458T C14805T T17247C C23315T G26144T

EPI_ISL_433806
 2020-04-06 2020-04-29
 United Kingdom hCoV-19/England/CAMB-78A05/2020
 C1314T G11083T C11575T C14805T T17247C G26144T T28852C

EPI_ISL_433808
 2020-04-06 2020-04-29
 United Kingdom hCoV-19/England/CAMB-78A32/2020
 A2480G C2558T G11083T A11090T C13019T C14805T C21575T C23422T G26144T G26959A A28175G C29739T

EPI_ISL_433810
 2020-04-06 2020-04-29
 United Kingdom hCoV-19/England/CAMB-78A7E/2020
 C241T C2416T C3037T C8655T C14408T G16117T G20578T A23403G G25563T TACTCTCCAATTTTTCTTATTGTTGCGGCAATAGTGTTTATAACACTTTGCTTCACAC27682-

EPI_ISL_433811
 2020-04-06 2020-04-29
 United Kingdom hCoV-19/England/CAMB-78A9C/2020
 C241T C3037T C7231T C14408T A23403G G23873T GGG28881AAC

EPI_ISL_433848
 2020-04-06 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7ABB5/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_433862
 2020-04-06 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7ACA3/2020
 G677A ATG1605- A1904G C4940A C5826T C8090T C10789T C28060T

EPI_ISL_434216 MT632770
 2020-04-06 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S456/2020
 C241T C1059T C3037T C14214T C14408T A15426G C18029T C19029T A23403G G25563T C26208T T29410C G29553A

EPI_ISL_434218 MT632777
 2020-04-06 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S458/2020
 C241T C1059T C3037T G4399T C14408T A15426G C18029T C19029T A23403G G25563T T29410C G29553A

EPI_ISL_434221 MT632792
 2020-04-06 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S461/2020
 C241T C1059T C3037T C14408T A15426G C18029T C19029T A23403G G25563T T29410C G29553A

EPI_ISL_434231 MT632769
 2020-04-06 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S471/2020
 C241T C1059T C3037T C14408T A15426G C18029T C18115T G18859T C19029T G19656T A23403G G25563T T29410C G29553A

EPI_ISL_434242 MT632783
 2020-04-06 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S482/2020
 C241T C1059T C3037T C14408T A15426G C18029T C18115T G18859T C19029T A23403G G25563T T29410C G29553A

EPI_ISL_434614 MT429190
 2020-04-06 2020-04-30
 United States SARS-CoV-2/human/USA/WI-UW-268/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_434615 MT429191
 2020-04-06 2020-04-30
 United States SARS-CoV-2/human/USA/WI-UW-269/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1319A G2945A C3037T C8389T C10156T C14408T A23403G A23588T G25563T C27657T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_434659
 2020-04-06 2020-04-30
 Sweden hCoV-19/Sweden/20-06908/2020
 C241T C1059T C2388T C3037T C14408T C21727T A23403G G24368T G25563T

EPI_ISL_434660
 2020-04-06 2020-04-30
 Sweden hCoV-19/Sweden/20-06928/2020
 C241T C1059T C3037T C11003G C14408T A23403G G24368T G25563T

EPI_ISL_434663
 2020-04-06 2020-04-30
 Sweden hCoV-19/Sweden/20-07025/2020
 C241T A808T C1059T C3037T C14408T A23403G G24368T G25563T C28887T

EPI_ISL_434664
 2020-04-06 2020-04-30
 Sweden hCoV-19/Sweden/20-07034/2020
 C241T C1059T C3037T C8809T C14408T A23403G G24368T G25563T C29836T

EPI_ISL_435702
 2020-04-06 2020-05-05
 United States hCoV-19/USA/CT-Yale-100/2020
 C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_436575 MT706389
 2020-04-06 2020-05-06
 United States SARS-CoV-2/human/USA/WI-UW-281/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A4838G C7420T T8391C C14937T C20148T G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_436576 MT706390
 2020-04-06 2020-05-06
 United States SARS-CoV-2/human/USA/WI-UW-282/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G3692T A4838G C7420T C14937T C20148T C25916T C26907G G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_436577 MT706391
 2020-04-06 2020-05-06
 United States SARS-CoV-2/human/USA/WI-UW-283/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1213T T2116A G11083T G17211T G23518A G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_436579 MT706393
 2020-04-06 2020-05-06
 United States SARS-CoV-2/human/USA/WI-UW-285/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A7929G C9195T C14408T T15354C C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_436580 MT706394
 2020-04-06 2020-05-06
 United States SARS-CoV-2/human/USA/WI-UW-286/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G3692T A4838G C7420T C14937T C20148T C25916T C26907G G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_436581 MT706395
 2020-04-06 2020-05-06
 United States SARS-CoV-2/human/USA/WI-UW-287/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A4838G C7420T C14937T C20148T G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_436638 MT706450
 2020-04-06 2020-05-06
 United States SARS-CoV-2/human/USA/WI-UW-344/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G2809T C4586T C9520T C14790T A16438G A29231G G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_436939
 2020-04-06 2020-05-07
 United States hCoV-19/USA/LA-BIE-071/2020
 C241T C1059T C3037T C10188T C14408T A23403G G25563T C27964T

EPI_ISL_436944 MT446344
 2020-04-06 2020-05-07
 United States SARS-CoV-2/human/USA/LA-BIE-076/2020
 C241T C1059T C3037T C10188T C14408T A23403G T24982C G25563T C27964T

EPI_ISL_436945 MT446345
 2020-04-06 2020-05-07
 United States SARS-CoV-2/human/USA/LA-BIE-077/2020
 C241T C1059T C3037T C10188T C14408T A23403G T24982C G25563T C25708T C27964T

EPI_ISL_436947 MT446347
 2020-04-06 2020-05-07
 United States SARS-CoV-2/human/USA/LA-BIE-079/2020
 C241T C1059T C3037T C10188T C14408T A23403G T24982C G25563T C27964T

EPI_ISL_436948 MT446348
 2020-04-06 2020-05-07
 United States SARS-CoV-2/human/USA/LA-BIE-080/2020
 C241T C1059T C3037T A12082G C14408T A23403G G25563T T26320C C27964T

EPI_ISL_436950 MT446350
 2020-04-06 2020-05-07
 United States SARS-CoV-2/human/USA/LA-BIE-082/2020
 C241T C1059T C2652T C3037T C10319T C14408T A23403G G25563T C27964T

EPI_ISL_436952 MT446352
 2020-04-06 2020-05-07
 United States SARS-CoV-2/human/USA/LA-BIE-084/2020
 C241T C1059T C3037T C10319T A12820G C14408T A23403G G25563T C27964T

EPI_ISL_436953 MT446353
 2020-04-06 2020-05-07
 United States SARS-CoV-2/human/USA/LA-BIE-085/2020
 C241T C364T C1059T C3037T C10319T C14408T A23403G G25563T C27964T

EPI_ISL_436957 MT446357
 2020-04-06 2020-05-07
 United States SARS-CoV-2/human/USA/LA-BIE-089/2020
 C241T C1059T C3037T A4220G C10188T C14408T A23403G T24982C G25563T G27478T C27964T

EPI_ISL_436958 MT446358
 2020-04-06 2020-05-07
 United States SARS-CoV-2/human/USA/LA-BIE-090/2020
 C241T C1059T C3037T C10188T C14408T A23403G T24982C G25563T G27461T C27964T

EPI_ISL_437051 MT449644
 2020-04-06 2020-05-08
 United States SARS-CoV-2/human/USA/CA-CZB-1051/2020
 ATTAAAGG1- T11C G7273A C10277T

EPI_ISL_437203
 2020-04-06 2020-05-08
 Austria hCoV-19/Austria/Graz-MUG7/2020
 C241T C14407T A23403G A26265T A26530G

EPI_ISL_437220
 2020-04-06 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0020/2020
 C241T C1059T C3037T C14408T A23403G G25563T C25587T C27752T G29706T

EPI_ISL_437221
 2020-04-06 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0021/2020
 A187G C241T C3037T T13434C C14408T C14599T C17536T A23403G C29774T

EPI_ISL_437291
 2020-04-06 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0100/2020
 A187G C241T C3037T C14408T A23403G

EPI_ISL_437366
 2020-04-06 2020-05-08
 United States hCoV-19/USA/MN-MDH-374/2020
 AT1- C8782T C17747T A17858G C18060T A24694T T28144C A28356G G28812T C29870A

EPI_ISL_437393 MT450879
 2020-04-06 2020-05-08
 United States SARS-CoV-2/human/USA/VA-DCLS-0177/2020
 ATTAAAGGTT1- C241T C1059T C1917T C3037T C14408T C20719T A23403G G25563T ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869T

EPI_ISL_437394 MT450880
 2020-04-06 2020-05-08
 United States SARS-CoV-2/human/USA/VA-DCLS-0178/2020
 ATTA1- T9W C241T C1059T C1917T C3037T C14408T C20719T A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_437395 MT450881
 2020-04-06 2020-05-08
 United States SARS-CoV-2/human/USA/VA-DCLS-0179/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C1917T C3037T C14408T C20719T A23403G G25563T

EPI_ISL_437396 MT450882
 2020-04-06 2020-05-08
 United States SARS-CoV-2/human/USA/VA-DCLS-0180/2020
 ATTA1- C241T C1059T C1917T C3037T C14408T C20719T A23403G G25563T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_437397 MT450883
 2020-04-06 2020-05-08
 United States SARS-CoV-2/human/USA/VA-DCLS-0181/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1917T C3037T C14408T C20719T A23403G G25563T C29870M

EPI_ISL_437431 MT450917
 2020-04-06 2020-05-08
 United States SARS-CoV-2/human/USA/VA-DCLS-0216/2020
 A1- C241T C1059T C1917T C3037T C14408T C20719T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_437456
 2020-04-06 2020-05-09
 United States hCoV-19/USA/IN-Lilly-IPB0170-15bc11/2020
 C241T C3037T C12513T C14408T A23403G

EPI_ISL_437457
 2020-04-06 2020-05-09
 United States hCoV-19/USA/IN-Lilly-IPB0170-16bc18/2020
 C241T C3037T T3741G C3903T C5497T C14408T A23403G C26815A C27741T

EPI_ISL_437539
 2020-04-06 2020-05-11
 India hCoV-19/India/S12/2020
 C241T C3037T C13730T C14408T A23403G C29870A

EPI_ISL_437575
 2020-04-06 2020-05-11
 United States hCoV-19/USA/CA-SR0225/2020
 C241T C1288T C3037T C11575T C14408T A20268G A23403G T25556G C28854T

EPI_ISL_437601
 2020-04-06 2020-05-11
 Japan hCoV-19/Japan/Donner1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C14408T C21742T A23403G T27730W GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_437939
 2020-04-06 2020-05-12
 Austria hCoV-19/Austria/CeMM0067/2020
 C241T C3037T C4002T G10097A C13536T C14408T G15652K T18123Y C19718T C22323T T22521K A23403G C23731T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_438947
 2020-04-06 2020-05-12
 Japan hCoV-19/Japan/Donner2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C823T C3037T C14408T G23401T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_438951
 2020-04-06 2020-05-12
 Japan hCoV-19/Japan/Donner6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C823T C3037T C14408T G23401T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_438953
 2020-04-06 2020-05-12
 Japan hCoV-19/Japan/Donner8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C823T C3037T C14408T G23401T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_439145
 2020-04-06 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB1059/2020
 C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_439672
 2020-04-06 2020-05-12
 United Kingdom hCoV-19/England/LIVE-98F00/2020
 C241T C3037T C13730T C14408T A23403G G25429T

EPI_ISL_439706
 2020-04-06 2020-05-12
 United Kingdom hCoV-19/England/LIVE-9929D/2020
 C241T C3037T G10097A T13216G C14408T A23403G C23731T GGG28881AAC

EPI_ISL_441016
 2020-04-06 2020-05-12
 United Kingdom hCoV-19/England/LOND-D3992/2020
 C241T C3037T C14408T A23403G

EPI_ISL_441017
 2020-04-06 2020-05-12
 United Kingdom hCoV-19/England/LOND-D39A1/2020
 C241T C3037T T10135C C14408T A23403G G27281T GGG28881AAC

EPI_ISL_441018
 2020-04-06 2020-05-12
 United Kingdom hCoV-19/England/LOND-D39B0/2020
 C241T C3037T A3234G T4946G C14408T A23403G GGG28881AAC

EPI_ISL_441019
 2020-04-06 2020-05-12
 United Kingdom hCoV-19/England/LOND-D39CF/2020
 C241T C3037T G4285T A10948G C14408T A23403G C27542T GGG28881AAC

EPI_ISL_441020
 2020-04-06 2020-05-12
 United Kingdom hCoV-19/England/LOND-D39DE/2020
 C241T C3037T A3069G C4897T C6541T C14408T A20268G C21772T A23403G C28854T

EPI_ISL_441021
 2020-04-06 2020-05-12
 United Kingdom hCoV-19/England/LOND-D39FC/2020
 C241T C3037T C14408T A17222G A23403G C26681T GGG28881AAC

EPI_ISL_441022
 2020-04-06 2020-05-12
 United Kingdom hCoV-19/England/LOND-D3A08/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_441023
 2020-04-06 2020-05-12
 United Kingdom hCoV-19/England/LOND-D3A17/2020
 C241T C3037T C5784T C14408T A23403G GGG28881AAC

EPI_ISL_441024
 2020-04-06 2020-05-12
 United Kingdom hCoV-19/England/LOND-D3A26/2020
 C241T C3037T T12505C C14408T A23403G C25047T T26307A GGG28881AAC

EPI_ISL_441025
 2020-04-06 2020-05-12
 United Kingdom hCoV-19/England/LOND-D3A35/2020
 C241T AAGTCATTT686- C3037T C14408T C19972T A23403G C25350T

EPI_ISL_441026
 2020-04-06 2020-05-12
 United Kingdom hCoV-19/England/LOND-D3A44/2020
 C241T C3037T C14408T A23403G G27281T GGG28881AAC

EPI_ISL_441027
 2020-04-06 2020-05-12
 United Kingdom hCoV-19/England/LOND-D3A53/2020
 C241T C3037T C14408T A23403G G27281T GGG28881AAC

EPI_ISL_441028
 2020-04-06 2020-05-12
 United Kingdom hCoV-19/England/LOND-D3A62/2020
 C241T C3037T C14408T A23403G A26530G

EPI_ISL_441029
 2020-04-06 2020-05-12
 United Kingdom hCoV-19/England/LOND-D3A71/2020
 C241T C3037T C14408T C18788T T19839C A23403G GGG28881AAC G29227T

EPI_ISL_441030
 2020-04-06 2020-05-12
 United Kingdom hCoV-19/England/LOND-D3A80/2020
 C241T C3037T C14408T A23403G G27281T GGG28881AAC

EPI_ISL_441031
 2020-04-06 2020-05-12
 United Kingdom hCoV-19/England/LOND-D3A9F/2020
 A2480G C2558T G3871T G4444T G11083T A13269G C14805T G26144T

EPI_ISL_441032
 2020-04-06 2020-05-12
 United Kingdom hCoV-19/England/LOND-D3AAE/2020
 C241T C3037T C14408T A23403G A26530G

EPI_ISL_441033
 2020-04-06 2020-05-12
 United Kingdom hCoV-19/England/LOND-D3ABD/2020
 C241T C3037T C14408T C18788T T19839C A23403G GGG28881AAC G29227T

EPI_ISL_441034
 2020-04-06 2020-05-12
 United Kingdom hCoV-19/England/LOND-D3ACC/2020
 C241T C3037T C14408T G17964T A23403G A26530G

EPI_ISL_441564
 2020-04-06 2020-05-12
 United Kingdom hCoV-19/England/CAMB-7CEBA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C843T C3037T G8137T C14408T A23403G T25202K GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_441602
 2020-04-06 2020-05-12
 United Kingdom hCoV-19/England/CAMB-7DF4D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5817T C14408T A23403G T25202K GGG28881AAC T29660W

EPI_ISL_441711
 2020-04-06 2020-05-12
 United Kingdom hCoV-19/England/CAMB-7D745/2020
 AT1- ATG1605- AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_441773
 2020-04-06 2020-05-12
 United Kingdom hCoV-19/England/CAMB-7D97C/2020
 ATTAAAGG1- C241T C2940T C3037T C14408T A23403G C28863T GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_441774
 2020-04-06 2020-05-12
 United Kingdom hCoV-19/England/CAMB-7DAF1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1260T G11083T C14805T C23707T G26144T A29020G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_442194
 2020-04-06 2020-05-12
 United Kingdom hCoV-19/England/CAMB-7E058/2020
 ATTA1- C8293T G11083T C13458T C14805T T17247C C23315T T25202K G26144T

EPI_ISL_442208
 2020-04-06 2020-05-12
 United Kingdom hCoV-19/England/CAMB-7CED8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3787T C3903T C14408T A23403G G27877T G28086T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_442240
 2020-04-06 2020-05-12
 United Kingdom hCoV-19/England/CAMB-7D3E7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C218T C241T C3037T C14408T T15207A T17835C A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_442689
 2020-04-06 2020-05-12
 United Kingdom hCoV-19/England/BRIS-12375C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A G11083K C13517T C14408T A23403G C23731T G24867T G28580T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_442700
 2020-04-06 2020-05-12
 United Kingdom hCoV-19/England/BRIS-123BE7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G7798T C14408T G19300T A20268G A23403G C28854T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_442704
 2020-04-06 2020-05-12
 United Kingdom hCoV-19/England/BRIS-123877/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2458T C3037T C11308T C14408T A23403G

EPI_ISL_443294
 2020-04-06 2020-05-12
 France hCoV-19/France/B5689/2020
 C241T C3037T C8293T C14408T T18488C A23403G T24739C A26530G AAAAAAAAAAAAAAAAAAAAAA29882-

EPI_ISL_444092
 2020-04-06 2020-05-13
 United Kingdom hCoV-19/England/LOND-D416C/2020
 C241T C3037T C14408T A23403G G25396T A26530G

EPI_ISL_444093
 2020-04-06 2020-05-13
 United Kingdom hCoV-19/England/LOND-D417B/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T

EPI_ISL_444094
 2020-04-06 2020-05-13
 United Kingdom hCoV-19/England/LOND-D418A/2020
 C241T C313T C3037T G10105T C14408T A23403G C25904T C27673A GGG28881AAC

EPI_ISL_444095
 2020-04-06 2020-05-13
 United Kingdom hCoV-19/England/LOND-D4199/2020
 C241T C3037T A3234G T4946G C14408T G19846A A23403G GGG28881AAC

EPI_ISL_444096
 2020-04-06 2020-05-13
 United Kingdom hCoV-19/England/LOND-D41A8/2020
 C241T C1059T C3037T C14408T C14931T C17339T A23403G G24368T G25563T

EPI_ISL_444097
 2020-04-06 2020-05-13
 United Kingdom hCoV-19/England/LOND-D41B7/2020
 C241T G285A C3037T C14408T A23403G

EPI_ISL_444098
 2020-04-06 2020-05-13
 United Kingdom hCoV-19/England/LOND-D41C6/2020
 C241T C3037T C14408T A23403G GGG28881AAC G29315C

EPI_ISL_444099
 2020-04-06 2020-05-13
 United Kingdom hCoV-19/England/LOND-D41D5/2020
 C241T C3037T C14408T A23403G A26530G

EPI_ISL_444100
 2020-04-06 2020-05-13
 United Kingdom hCoV-19/England/LOND-D41E4/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_444101
 2020-04-06 2020-05-13
 United Kingdom hCoV-19/England/LOND-D41F3/2020
 C241T C3037T C14408T A23403G G27281T GGG28881AAC

EPI_ISL_444102
 2020-04-06 2020-05-13
 United Kingdom hCoV-19/England/LOND-D420F/2020
 A2480G C2558T C6070T G11083T A12918G C14805T G26144T G29262T

EPI_ISL_444103
 2020-04-06 2020-05-13
 United Kingdom hCoV-19/England/LOND-D421E/2020
 G11083T C11102T C14805T C23707T G26144T C26681T G28460A

EPI_ISL_444104
 2020-04-06 2020-05-13
 United Kingdom hCoV-19/England/LOND-D422D/2020
 C241T C3037T C6982T C14408T A23403G A26530G

EPI_ISL_444105
 2020-04-06 2020-05-13
 United Kingdom hCoV-19/England/LOND-D423C/2020
 C241T C913T C3037T C8326T C14408T A23403G GGG28881AAC

EPI_ISL_444106
 2020-04-06 2020-05-13
 United Kingdom hCoV-19/England/LOND-D424B/2020
 C241T C313T C3037T C14408T G19872T A23403G GGG28881AAC

EPI_ISL_444108
 2020-04-06 2020-05-13
 United Kingdom hCoV-19/England/LOND-D4287/2020
 C241T G677A C3037T C14408T A23403G GGG28881AAC

EPI_ISL_444109
 2020-04-06 2020-05-13
 United Kingdom hCoV-19/England/LOND-D4296/2020
 C203T C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_444110
 2020-04-06 2020-05-13
 United Kingdom hCoV-19/England/LOND-D42A5/2020
 C241T C3037T C3267T C14408T A23403G AG28877TC GGG28881AAC

EPI_ISL_444111
 2020-04-06 2020-05-13
 United Kingdom hCoV-19/England/LOND-D42B4/2020
 C241T C3037T C14408T A23403G A26530G

EPI_ISL_444112
 2020-04-06 2020-05-13
 United Kingdom hCoV-19/England/LOND-D42C3/2020
 G11083T C11102T C14805T C23707T G26144T C26681T G28460A

EPI_ISL_444114
 2020-04-06 2020-05-13
 United Kingdom hCoV-19/England/LOND-D42E1/2020
 C241T C3037T A3234G T4946G C14408T A23403G GGG28881AAC

EPI_ISL_444116
 2020-04-06 2020-05-13
 United Kingdom hCoV-19/England/LOND-D431B/2020
 C241T C3037T T3741C C14408T A23403G GGG28881AAC

EPI_ISL_444117
 2020-04-06 2020-05-13
 United Kingdom hCoV-19/England/LOND-D432A/2020
 C241T C3037T C14408T G16852T C19488T A23403G G28329A GGG28881AAC

EPI_ISL_444120
 2020-04-06 2020-05-13
 United Kingdom hCoV-19/England/LOND-D4366/2020
 C241T C3037T C14408T A23403G A26530G

EPI_ISL_444767
 2020-04-06 2020-05-14
 United States hCoV-19/USA/NY-NYUMC650/2020
 C241T C1059T C3037T G11083T C14408T A23403G G25563T

EPI_ISL_444768
 2020-04-06 2020-05-14
 United States hCoV-19/USA/NY-NYUMC651/2020
 C241T C1059T C3037T T12283C C14408T C16260T A23403G G25563T C28821A

EPI_ISL_444769
 2020-04-06 2020-05-14
 United States hCoV-19/USA/NY-NYUMC652/2020
 C241T C1059T C3037T C14408T G14792T C15763T A23403G G25563T

EPI_ISL_444973
 2020-04-06 2020-05-14
 Spain hCoV-19/Spain/Barcelona_VH7280/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C241T C3037T C14408T A20239T A20268G A23403G G29734C

EPI_ISL_444974
 2020-04-06 2020-05-14
 Spain hCoV-19/Spain/Barcelona_VH7458/2020
 C241T C3037T C13426T C14408T A20268G A23403G

EPI_ISL_444976
 2020-04-06 2020-05-14
 Spain hCoV-19/Spain/Barcelona_VH7773/2020
 C241T C3037T C8739T C14408T C18744T A20268G A22893G A23403G

EPI_ISL_445369
 2020-04-06 2020-05-15
 Chile hCoV-19/Chile/Santiago_73/2020
 AT1GA CC15MM C241T C3037T T7310Y C14408T C22624T A23403G T27299C GGG28881AAC T29148C

EPI_ISL_445379
 2020-04-06 2020-05-15
 Chile hCoV-19/Chile/Santiago_81/2020
 AT1RW A4W C36Y T76W T78K C241T G1319A C3037T C8389T C14408T A23403G G25563T G27708T G29861T

EPI_ISL_445545
 2020-04-06 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-2A282/2020
 AT1- C241T C3037T T3100G G10097A C13584T C14408T A23403G C23731T G25947T GGG28881AAC

EPI_ISL_445553
 2020-04-06 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-2A316/2020
 C241T C3037T A6616R C6990T C14408T T18231Y A23403G C29200T

EPI_ISL_445573
 2020-04-06 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-2A4B9/2020
 C241T C3037T C14408T C19273Y A23403G C24748Y GGG28881AAC

EPI_ISL_445595
 2020-04-06 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-2A61D/2020
 C241T C3037T T4186C G11801A C14408T T19839C C23127T A23403G G25552T GGG28881AAC

EPI_ISL_445650
 2020-04-06 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-2A9F6/2020
 ATTA1- C241T G1589R C3037T C14408T A23403G G25429T G29474T G29543K

EPI_ISL_445674
 2020-04-06 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-2ABA5/2020
 ATT1- T202C C1102T G11083T C12870T C14805T T17247C G26144T

EPI_ISL_445675
 2020-04-06 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-2ABB4/2020
 C241T C3037T A9760G G11521T C14408T G15016T A23403G GGG28881AAC C29284T

EPI_ISL_445681
 2020-04-06 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-2AC1B/2020
 ATTAAAGGTTTA1- C241T C3037T A6228G C14408T C21622M A23403G

EPI_ISL_445682
 2020-04-06 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-2AC39/2020
 C241T C3037T C7267T C14408T C14741T A23403G

EPI_ISL_445689
 2020-04-06 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-2ACB1/2020
 AT1- C241T C3037T G11083T C14408T C16289T A23403G C24130T G25429T

EPI_ISL_446193
 2020-04-06 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-2F065/2020
 C241T C3037T C6990T C14408T A23403G

EPI_ISL_446206
 2020-04-06 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-2F144/2020
 ATTA1- C241T C3037T C9344T G10097A C14408T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_446210
 2020-04-06 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-2F180/2020
 ATTAAAGGTTTATACCT1- C241T C2536T C3037T C14408T G15438T A18890G A20268G A23403G

EPI_ISL_446216
 2020-04-06 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-2F1EA/2020
 C241T C3037T C7945T G10870T G11083T C14408T A23403G GGG28881AAC

EPI_ISL_446222
 2020-04-06 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-2F241/2020
 ATTAAAGGTTTATACCTTC1- C241T C1190T C3037T C5817T C12528T C14408T A23403G GGG28881AAC

EPI_ISL_447858
 2020-04-06 2020-05-18
 India hCoV-19/India/CCMB_J812/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C3686T C6312A G11083T C13730T A21792T C23929T C27213T C28311T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_447894 MT481934
 2020-04-06 2020-05-18
 United States SARS-CoV-2/human/USA/CA-CZB-1143/2020
 ATTAAAGGTTTA1- C241T C1059T C3037T C9561T C14408T C17410A A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_448127
 2020-04-06 2020-05-19
 United Kingdom hCoV-19/Scotland/CVR1713/2020
 C241T C3037T C10798A C13862T C14408T C15017T A23403G C28836T

EPI_ISL_448128
 2020-04-06 2020-05-19
 United Kingdom hCoV-19/Scotland/CVR1718/2020
 C241T C3037T C10798A C13862T C14408T G14584A C15017T A23403G C28836T

EPI_ISL_448455
 2020-04-06 2020-05-19
 United Kingdom hCoV-19/England/OXON-AC4BF/2020
 C241T C3037T G10097A C14408T A23403G C23731T G28580T G28628C GGG28881AAC

EPI_ISL_448470
 2020-04-06 2020-05-19
 United Kingdom hCoV-19/England/OXON-AC631/2020
 C241T C313T C3037T C11379T C14408T A23403G G28086T GGG28881AAC

EPI_ISL_448472
 2020-04-06 2020-05-19
 United Kingdom hCoV-19/England/OXON-AC67D/2020
 C241T C313T C3037T G4109A C8090T C14408T A23403G G25456T G28396T GGG28881AAC

EPI_ISL_448492
 2020-04-06 2020-05-19
 United Kingdom hCoV-19/England/OXON-AC8FF/2020
 C241T C3037T C14408T A16682G C22993A A23403G GGG28881AAC

EPI_ISL_448493
 2020-04-06 2020-05-19
 United Kingdom hCoV-19/England/OXON-AC90B/2020
 C241T C3037T C13730T C14408T A23403G G25429T

EPI_ISL_448494
 2020-04-06 2020-05-19
 United Kingdom hCoV-19/England/OXON-AC91A/2020
 C241T C3037T C14408T C14724T A23403G GGG28881AAC C29722T

EPI_ISL_448496
 2020-04-06 2020-05-19
 United Kingdom hCoV-19/England/OXON-AC938/2020
 C241T C313T C3037T C3552T G4109A C8090T C14408T A23403G G25456T GGG28881AAC

EPI_ISL_448503
 2020-04-06 2020-05-19
 United Kingdom hCoV-19/England/OXON-ACA44/2020
 C241T C2416T C3037T C14408T C14786T T16503C G20578T A23403G G25563T T27810C

EPI_ISL_448505
 2020-04-06 2020-05-19
 United Kingdom hCoV-19/England/OXON-ACA62/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_448506
 2020-04-06 2020-05-19
 United Kingdom hCoV-19/England/OXON-ACA80/2020
 C241T C313T C3037T C11379T C14408T A23403G T24156C G28086T GGG28881AAC

EPI_ISL_448508
 2020-04-06 2020-05-19
 United Kingdom hCoV-19/England/OXON-ACAEA/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_448510
 2020-04-06 2020-05-19
 United Kingdom hCoV-19/England/OXON-ACB41/2020
 C241T C832T C3037T G11083T C14408T C19488T C21622T A23403G GGG28881AAC

EPI_ISL_448512
 2020-04-06 2020-05-19
 United Kingdom hCoV-19/England/OXON-ACB6F/2020
 T77K T85W T8168Y G11083T C14805T C18570T G25769T G26144T G28842T

EPI_ISL_448515
 2020-04-06 2020-05-19
 United Kingdom hCoV-19/England/OXON-ACBAB/2020
 C241T C3037T C14408T G22201T A23403G C26447T GGG28881AAC

EPI_ISL_448522
 2020-04-06 2020-05-19
 United Kingdom hCoV-19/England/OXON-ACC6C/2020
 C241T C3037T G10870T C14408T A23403G

EPI_ISL_448526
 2020-04-06 2020-05-19
 United Kingdom hCoV-19/England/OXON-ACCC6/2020
 C241T G1599T C3037T G5429T C14408T C18788T T19839C T21655K A23403G GGG28881AAC

EPI_ISL_448529
 2020-04-06 2020-05-19
 United Kingdom hCoV-19/England/OXON-ACD0F/2020
 C241T T447G C3037T C14408T A23403G GGG28881AAC

EPI_ISL_448531
 2020-04-06 2020-05-19
 United Kingdom hCoV-19/England/OXON-ACD2D/2020
 C241T C3037T C6723T C8692T C14408T A23403G GGG28881AAC

EPI_ISL_448532
 2020-04-06 2020-05-19
 United Kingdom hCoV-19/England/OXON-ACD4B/2020
 G7743T G9623T G11083T C14267T C14805T T17247C A22115G G26144T

EPI_ISL_448534
 2020-04-06 2020-05-19
 United Kingdom hCoV-19/England/OXON-ACD69/2020
 C241T C3037T A12199G C14408T A23403G GGG28881AAC

EPI_ISL_448535
 2020-04-06 2020-05-19
 United Kingdom hCoV-19/England/OXON-ACD87/2020
 C241T C3037T C14408T G22201T A23403G C26447T GGG28881AAC

EPI_ISL_448537
 2020-04-06 2020-05-19
 United Kingdom hCoV-19/England/OXON-ACDA5/2020
 C241T C3037T C6861T C14408T C16915T C19170T G19509A A23403G GGG28881AAC

EPI_ISL_448540
 2020-04-06 2020-05-19
 United Kingdom hCoV-19/England/OXON-ACE2A/2020
 C241T C3037T C14408T A23403G

EPI_ISL_448551
 2020-04-06 2020-05-19
 United Kingdom hCoV-19/England/OXON-ACFEB/2020
 T1477A A2480G C2558T C9391T G11083T C14805T C22088T G26144T C28292A C28854T

EPI_ISL_449834 MT535505
 2020-04-06 2020-05-19
 United States SARS-CoV-2/Human/USA/UT-01598/2020
 A1T C241T C2416T C3037T C14408T A23403G G25563T

EPI_ISL_449837 MT535508
 2020-04-06 2020-05-19
 United States SARS-CoV-2/Human/USA/UT-01607/2020
 C241T T833C C1059T C3037T C14408T A22320G A23403G G25563T C27964T

EPI_ISL_449838 MT535509
 2020-04-06 2020-05-19
 United States SARS-CoV-2/Human/USA/UT-01609/2020
 C241T C2416T C3037T C14408T C16568T A23403G G25563T C29870A

EPI_ISL_450176
 2020-04-06 2020-05-20
 United States hCoV-19/USA/LA-SR0322/2020
 C241T C1059T C3037T C9246T C10188T C14408T A23403G T24982C G25563T C27964T

EPI_ISL_450188
 2020-04-06 2020-05-20
 Jordan hCoV-19/Jordan/SR-0336/2020
 C8782T C9223T G11230T T28144C G28878A G29742A

EPI_ISL_450734
 2020-04-06 2020-05-22
 Belgium hCoV-19/Belgium/ITM_C338/2020
 C241T C3037T C14408T T23287C A23403G A23870G GGG28881AAC

EPI_ISL_450805 MT507795
 2020-04-06 2020-05-22
 United States SARS-CoV-2/homo sapien/USA/VI-CDC-3884/2020
 C241T C527Y C1059T C3037T A3298W C7728T C9724T C12439T C14408T A23403G G25563T TTTGCTTTTGCTTGTCCTGACGGCGTAAAACACGTCTATCAG27580- C27964T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_450811
 2020-04-06 2020-05-22
 Sweden hCoV-19/Sweden/20-06909/2020
 C241T C1059T C3037T C14408T G20568T A23403G G24368T G25563T T27267C

EPI_ISL_451888 LR824450
 2020-04-06 2020-05-25
 Switzerland 110470
 C241T C2094T C3037T C5284Y C14408T A19334R T22449K C23280Y A23403G C28854T

EPI_ISL_452209
 2020-04-06 2020-05-27
 India hCoV-19/India/NIV-7786/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C6310A C6312A G11083T C13730T C19524T C23929T C28311T AGTGCTATCCCCATG29827- TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_452210
 2020-04-06 2020-05-27
 India hCoV-19/India/NIV-7830/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C313T C3037T C5700A C14408T G23236T A23403G G23593C GGG28881AAC AGTGCTATCCCCATG29827- TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_454250
 2020-04-06 2020-05-28
 Portugal hCoV-19/Portugal/PT0526/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C2370T C3037T A6308G C14408T A22671G A23403G G24102T A28920C TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454251
 2020-04-06 2020-05-28
 Portugal hCoV-19/Portugal/PT0527/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T T689C C3037T C3140T C14408T C21811T A23403G G24077T T28705C C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454252
 2020-04-06 2020-05-28
 Portugal hCoV-19/Portugal/PT0528/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3140T C14408T A23403G G24077T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454253
 2020-04-06 2020-05-28
 Portugal hCoV-19/Portugal/PT0529/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C4832T C14408T A23403G GGG28881AAC C29205T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454324
 2020-04-06 2020-05-28
 Portugal hCoV-19/Portugal/PT0601/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T T1116G C2416T C3037T G8371T C14408T A23403G G25563T C25831T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454351
 2020-04-06 2020-05-28
 Portugal hCoV-19/Portugal/PT0628/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C10341A C14408T T22963C A23403G A23544T T28678C GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454352
 2020-04-06 2020-05-28
 Portugal hCoV-19/Portugal/PT0629/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G C26313T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454402
 2020-04-06 2020-05-28
 United States hCoV-19/USA/PA-MGEL140/2020
 C241T C1059T C3037T C14408T A23403G G25563T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_455121
 2020-04-06 2020-05-29
 Netherlands hCoV-19/Netherlands/Friesland_18/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11596T C14408T G23126T A23403G G25606T A26530G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455155
 2020-04-06 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_350/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G20275A A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455156
 2020-04-06 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_351/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T10561C C14408T C15324T G21296A A23403G C28844T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455157
 2020-04-06 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_352/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G12550A C14408T A20268G C20740A A23403G G24053A G29734C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455232
 2020-04-06 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_430/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C19170T G19509A A23403G C26313T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455235
 2020-04-06 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_433/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C23709T A24036G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455290
 2020-04-06 2020-05-29
 Netherlands hCoV-19/Netherlands/NoordBrabant_106/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455609 MT536176
 2020-04-06 2020-05-29
 United States SARS-CoV-2/human/USA/LA-BIE-051/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATC1- C241T C1059T C3037T A9793G C10188T C14408T A23403G T24982C G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_455611 MT536178
 2020-04-06 2020-05-29
 United States SARS-CoV-2/human/USA/LA-BIE-055/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCT1- C241T C1059T C3037T C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_455615 MT536182
 2020-04-06 2020-05-29
 United States SARS-CoV-2/human/USA/LA-BIE-061/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCT1- C241T C1059T C3037T C14408T A23403G G25563T C27964T C28099T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_455619 MT536186
 2020-04-06 2020-05-29
 United States SARS-CoV-2/human/USA/LA-BIE-065/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCT1- C241T C1059T C3037T C10319T C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_455620 MT536187
 2020-04-06 2020-05-29
 United States SARS-CoV-2/human/USA/LA-BIE-066/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCT1- C106T C241T C1059T C3037T C14408T A23403G G25563T C27964T C28099T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_455623 MT536190
 2020-04-06 2020-05-29
 United States SARS-CoV-2/human/USA/LA-BIE-070/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATC1- C241T C1059T C3037T C14408T G21777T A23403G G25563T C27964T C28099T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_456080
 2020-04-06 2020-06-01
 Brazil hCoV-19/Brazil/RJ-1464/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G9220A C14408T A23403G T27299C GGG28881AAC T29148C CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_456081
 2020-04-06 2020-06-01
 Brazil hCoV-19/Brazil/RJ-1466/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G T27299C GGG28881AAC T29148C CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_456088
 2020-04-06 2020-06-01
 Brazil hCoV-19/Brazil/RJ-1719/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6319G C14408T C14724T C18060T A23403G T24195C G25088T T26149C GGG28881AAC CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_456356
 2020-04-06 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR2065/2020
 C241T C3037T C14408T A23403G G24077T

EPI_ISL_456358
 2020-04-06 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR2067/2020
 C241T C3037T C4683T C14408T A23403G G24077T

EPI_ISL_457033
 2020-04-06 2020-06-02
 United Kingdom hCoV-19/England/EXET-13511D/2020
 C241T ACGGCGCCGATC672- C3037T A13456G C14408T A23403G GGG28881AAC

EPI_ISL_457063
 2020-04-06 2020-06-02
 United Kingdom hCoV-19/England/EXET-13547E/2020
 ATG1605- G14335T

EPI_ISL_457078
 2020-04-06 2020-06-02
 United Kingdom hCoV-19/England/EXET-13562D/2020
 C241T C3037T C5005T C10156T C14408T A23403G GGG28881AAC

EPI_ISL_457160
 2020-04-06 2020-06-02
 United Kingdom hCoV-19/England/EXET-135D37/2020
 G1440A G2891A C4668T T5521C C7815T A11144C

EPI_ISL_457180
 2020-04-06 2020-06-02
 United Kingdom hCoV-19/England/EXET-135F04/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_457184
 2020-04-06 2020-06-02
 United Kingdom hCoV-19/England/EXET-135F7D/2020
 ATG1605- G14335T

EPI_ISL_458123
 2020-04-06 2020-06-03
 Oman hCoV-19/Oman/205027055/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T C8832T G10265A C14408T C16293T C19269T A23403G GGG28881AAC -29814AT A29818T T29820A A29827T TG29829AT T29832C CC29837TG GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_458149
 2020-04-06 2020-06-03
 Brazil hCoV-19/Brazil/MA163069-IEC/2020
 C241T C3037T C4534T C6525T C14408T A18015G A23403G C25710T T27299C GGG28881AAC T29148C

EPI_ISL_458276
 2020-04-06 2020-06-04
 United States hCoV-19/USA/CA-SR0405/2020
 C241T C1059T C3037T A8252G C14408T A23403G G25563T

EPI_ISL_458298
 2020-04-06 2020-06-04
 India hCoV-19/India/CCMB_J714/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- G1820A A1846T C6312A G11083T G19679T C28311T C29774T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_459096
 2020-04-06 2020-06-04
 United Kingdom hCoV-19/Scotland/GCVR-172B70/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C203T C241T C3037T G7798T A10918M C14408T C19488T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_459100
 2020-04-06 2020-06-04
 United Kingdom hCoV-19/Scotland/GCVR-172C8C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1427T C3037T C9474Y C14408T C22879A A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_459103
 2020-04-06 2020-06-04
 United Kingdom hCoV-19/Scotland/GCVR-173D2E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G12067T C14408T A23403G G26615T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_459104
 2020-04-06 2020-06-04
 United Kingdom hCoV-19/Scotland/GCVR-173B8E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4540T C8782T T9477A C9532Y G11083T C14805T C25714T G25979T C26029A T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_459115
 2020-04-06 2020-06-04
 United Kingdom hCoV-19/Scotland/GCVR-173DE2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C4755T C14408T A21801C A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_459116
 2020-04-06 2020-06-04
 United Kingdom hCoV-19/Scotland/GCVR-173D6A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C12710T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_459118
 2020-04-06 2020-06-04
 United Kingdom hCoV-19/Scotland/GCVR-173D5B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7047T C14183T C14408T A23403G G26615T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_459120
 2020-04-06 2020-06-04
 United Kingdom hCoV-19/Scotland/GCVR-173BBB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10642T G13812T C14408T C19170T G19509A C21855T A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_459124
 2020-04-06 2020-06-04
 United Kingdom hCoV-19/Scotland/GCVR-173C21/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21077T C22879A A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_459134
 2020-04-06 2020-06-04
 United Kingdom hCoV-19/Scotland/GCVR-172C22/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8986M C14408T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_459141
 2020-04-06 2020-06-04
 United Kingdom hCoV-19/Scotland/GCVR-172BF8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241Y C3037Y C4540Y C8782Y T9477W G9856K C12242Y C14408Y C14805Y C18452Y C22879M A23403R G25979K C26029M G27754R T28144Y C28657Y C28863Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_459145
 2020-04-06 2020-06-04
 United Kingdom hCoV-19/Scotland/GCVR-173B60/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_459151
 2020-04-06 2020-06-04
 United Kingdom hCoV-19/Scotland/GCVR-172DD4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1874A C3037T C3411T C3885T A5353G C14408T C17104T A20268G A23403G C28253T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_459153
 2020-04-06 2020-06-04
 United Kingdom hCoV-19/Scotland/GCVR-173C9A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C22879A A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_459154
 2020-04-06 2020-06-04
 United Kingdom hCoV-19/Scotland/GCVR-172BAD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1587G G11083T C11344T C14805T T17247C T21033C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_459156
 2020-04-06 2020-06-04
 United Kingdom hCoV-19/Scotland/GCVR-172B8F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G17278T C19610T A23403G G25429T T26906C G29688T G29757T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_459157
 2020-04-06 2020-06-04
 United Kingdom hCoV-19/Scotland/GCVR-172CAA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G410T C3037T C14408T C22879A A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_459984
 2020-04-06 2020-06-05
 Morocco hCoV-19/Morocco/6906/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_460121 MT520196
 2020-04-06 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00258/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C1059T C3037T G3892T C14408T A23403G G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_460132 MT520207
 2020-04-06 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00687/2020
 ATTAAAGGTTTA1- C241T C619T C1059T C3037T C14408T A14912G A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_460147 MT520222
 2020-04-06 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00242/2020
 ATTAAAGGTTTATACCTT1- C241T C1059T C3037T G3892T C14408T A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_460153 MT520228
 2020-04-06 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00675/2020
 ATTAAAGGTTTATACCTTCCC1- C241T C3037T C13730T C14408T A23403G G25429T C28849T GAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29864-

EPI_ISL_460162 MT520237
 2020-04-06 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00691/2020
 ATTAAA1- C241T C1059T C3037T C14408T A23403G G25563T C29503T AAAAAA29898-

EPI_ISL_460173 MT520248
 2020-04-06 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00254/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C1059T C3037T G3892T C14408T A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_460187 MT520262
 2020-04-06 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00690/2020
 ATTAAA1- G105T C241T C3037T C14408T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_460188 MT520263
 2020-04-06 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00229/2020
 ATTAAAGGTTTATAC1- C84T C241T C1059T C3037T C6730T C14177T C14408T A23403G G25563T C25710T G28960T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460191 MT520266
 2020-04-06 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00695/2020
 ATTAAA1- G105T C241T C1812T C3037T C14408T C18877T A23403G G25563T C26606T AAAAAAAAAAAAAAAA29888-

EPI_ISL_460213 MT520288
 2020-04-06 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00247/2020
 ATTAAAGGTTTA1- C241T C1059T C3037T G3892T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_460215 MT520290
 2020-04-06 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00693/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T C3037T C14408T A23403G C25916T T27299C T28360C GGG28881AAC T29148C C29769T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_460233 MT520308
 2020-04-06 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00704/2020
 ATTAAA1- C241T C2416T C3037T C14408T A23403G G25563T G26233T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_460237 MT520312
 2020-04-06 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00239/2020
 ATTAAAGGTTTATACCTTCCC1- C241T C1059T C3037T G3892T C14408T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460257 MT520332
 2020-04-06 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00688/2020
 ATTAAA1- C241T C2416T C3037T C14408T A23403G G25563T A25759G C26447T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_460268 MT520343
 2020-04-06 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00699/2020
 ATTAAA1- C241T C2416T C3037T A7130G T10216C C14408T A23403G G25563T G26233T G28337T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_460293 MT520368
 2020-04-06 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00705/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C2416T C3037T C13130A C14408T A23403G G25563T G26233T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_460299 MT520374
 2020-04-06 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00230/2020
 ATTAAA1- C241T C1059T C3037T G3892T C14408T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460305 MT520380
 2020-04-06 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00248/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C1059T C3037T G3892T C14408T C21658G A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_460325 MT520400
 2020-04-06 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00262/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C3037T C4423T C10207T A12004G C14408T A23403G C29774T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460332 MT520407
 2020-04-06 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00263/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C1059T C3037T G3892T C12357T C14408T A23403G G25563T TATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29832-

EPI_ISL_460336 MT520411
 2020-04-06 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00698/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T C3037T C14408T C16260T G21604T A23403G G25563T C28821A AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_460345 MT520420
 2020-04-06 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00231/2020
 ATTAAAGGTTTATAC1- C241T C1059T C3037T G3892T C14408T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460346 MT520421
 2020-04-06 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00243/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C1059T C3037T G3892T C14408T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460357 MT520432
 2020-04-06 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00703/2020
 ATTAAAGGTTTATAC1- C241T C2062T C2416T C3037T C14408T G17988A C18928T G19009T A23403G G25563T G26233T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460358 MT520433
 2020-04-06 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00701/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_460360 MT520435
 2020-04-06 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00261/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C1059T C3037T G3892T C14408T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460365 MT520440
 2020-04-06 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00238/2020
 ATTAAAGGTTTATA1- C84T C241T C1059T C3037T C6730T C14408T A23403G G25563T C25710T G28960T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_460373 MT520448
 2020-04-06 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00251/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C1059T C3037T G3892T C14408T A23403G G25563T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_460378 MT520453
 2020-04-06 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00256/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C1059T C3037T G3892T C14408T A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_460389 MT520464
 2020-04-06 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00234/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C1059T C3037T G3892T C14408T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460403 MT520478
 2020-04-06 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00694/2020
 ATTAAA1- C241T C3037T C14408T A23403G C25916T T27299C T28360C GGG28881AAC T29148C C29769T AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_460404 MT520479
 2020-04-06 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00257/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T C4423T C10207T A12004G C14408T A23403G C29774T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460407 MT520482
 2020-04-06 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00244/2020
 ATTAAAGGTTTAT1- C241T C1059T C3037T G3892T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_460414 MT520489
 2020-04-06 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00689/2020
 ATTAAAGGTTTATACCT1- G160A C241T C2416T C3037T A7130G T10216C C14408T A23403G G25563T G26233T G28337T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_460422 MT520497
 2020-04-06 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00696/2020
 ATTAAA1- C1063T G1658A C5758T C8782T T9477A C14805T G22708T C24748T G25979T C26681T T28144C C28657T C28863T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_460429 MT520504
 2020-04-06 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00252/2020
 ATTA1- C241T C1059T C3037T G3892T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_460435 MT520510
 2020-04-06 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00245/2020
 ATTAAAGGTTTATAC1- C241T C1059T C3037T G3892T C14408T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460450 MT520525
 2020-04-06 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00233/2020
 ATTAAA1- C241T C1059T C3037T G3892T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_460455 MT520530
 2020-04-06 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00250/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C84T C241T C1059T C3037T C6730T C14408T A23403G G25563T C25710T G28960T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460637
 2020-04-06 2020-06-06
 Netherlands hCoV-19/Netherlands/Drenthe_3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T13006C C14408T A23403G G25563T C25688T C26521T C27644T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460643
 2020-04-06 2020-06-06
 Netherlands hCoV-19/Netherlands/Friesland_21/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4113T C6555T C14408T C14925T G18281A A20755C A23403G G25563T G25784T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460670
 2020-04-06 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_497/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1997T C3037T C14408T A23403G G29422T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460825
 2020-04-06 2020-06-06
 Netherlands hCoV-19/Netherlands/Overijssel_6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C9491T C11109T C14408T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460930
 2020-04-06 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_30/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1218T C1594T C3037T C9712T C11109T C14408T C16887T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461032
 2020-04-06 2020-06-06
 Netherlands hCoV-19/Netherlands/Limburg_44/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A10323G A11438G C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461038
 2020-04-06 2020-06-06
 Netherlands hCoV-19/Netherlands/Limburg_50/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A10323G A11438G C11653T C12115T C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461418 MT683408
 2020-04-06 2020-06-06
 United States SARS-CoV-2/human/USA/WA-UW-6596/2020
 ATTAAAGGTTTAT1- A31T C36T A6693G C8782T C14877T C17747T A17858G C18060T C25433T T28144C C28519T A29188T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_461426
 2020-04-06 2020-06-06
 United States hCoV-19/USA/WA-UW-4659/2020
 ATTA1CACT C36T C241T C1059T C3037T C6040T G13749T C14408T A23403G C24082T G25563T TG29867AA C29870A

EPI_ISL_461428
 2020-04-06 2020-06-06
 United States hCoV-19/USA/WA-UW-4688/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C1929T C5784T A8072G C8782T C17747T A17858G C18060T G26730A T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_461429 MT683399
 2020-04-06 2020-06-06
 United States SARS-CoV-2/human/USA/WA-UW-4690/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C8782T C17747T A17858G C18060T T28144C AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_461440 MT683403
 2020-04-06 2020-06-06
 United States SARS-CoV-2/human/USA/WA-UW-5738/2020
 ATTAAA1- AAC34TTT C241T C1059T C3037T T14217A C14408T A23403G G24075A G25563T C27005T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_461441
 2020-04-06 2020-06-06
 United States hCoV-19/USA/CT-UW-5765/2020
 ATTAAAGGTTTATAC1- CCCAGGTAACAAAC19- C33T C36T C241T C1059T C3037T G7027A C14408T A23403G G25563T G25634A AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_461442 MT683404
 2020-04-06 2020-06-06
 United States SARS-CoV-2/human/USA/WA-UW-5781/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAG1- C241T C1059T C3037T G9805A C14408T A23403G G25563T C29870-

EPI_ISL_462252
 2020-04-06 2020-06-08
 Belgium hCoV-19/Belgium/DPR-0406398/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6507G C14408T A20999G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462254
 2020-04-06 2020-06-08
 Belgium hCoV-19/Belgium/VNM-0406400/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5171T C14408T G21786A A23403G G29009A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462357
 2020-04-06 2020-06-08
 Singapore hCoV-19/Singapore/239/2020
 C6312A C8139T G11083T C13730T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_462407
 2020-04-06 2020-06-08
 Singapore hCoV-19/Singapore/289/2020
 A939R C6310A C6312A G8834R G11083T C13730T C19524T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_462419
 2020-04-06 2020-06-08
 Singapore hCoV-19/Singapore/301/2020
 A969G C6310A C6312A G11083T C13730T C19524T C23929T T24796C C28311T AAAAAAAAAAAA29892-

EPI_ISL_462421
 2020-04-06 2020-06-08
 Singapore hCoV-19/Singapore/303/2020
 G260R G2035T C6310A C6312A A8576R G11083T C13730T C19524T C23929T C25047S G27798T C28311T C28758T AAAAAAAAAAAA29892-

EPI_ISL_462428
 2020-04-06 2020-06-08
 Singapore hCoV-19/Singapore/310/2020
 C6310A C6312A G11083T C13730T C19524T C23185T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_463277 MT585082
 2020-04-06 2020-06-10
 United States SARS-CoV-2/human/USA/LA-BIE-029/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T

EPI_ISL_463278 MT585083
 2020-04-06 2020-06-10
 United States SARS-CoV-2/human/USA/LA-BIE-030/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T

EPI_ISL_463280 MT585085
 2020-04-06 2020-06-10
 United States SARS-CoV-2/human/USA/LA-BIE-032/2020
 C241T C1059T C3037T C10319T C14408T C20628T A23403G G25563T G25907T C27964T

EPI_ISL_463281 MT585086
 2020-04-06 2020-06-10
 United States SARS-CoV-2/human/USA/LA-BIE-033/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T

EPI_ISL_463289 MT585094
 2020-04-06 2020-06-10
 United States SARS-CoV-2/human/USA/LA-BIE-041/2020
 C241T C1059T C3037T C14408T A23403G G25563T C25568T C27964T

EPI_ISL_463291 MT585096
 2020-04-06 2020-06-10
 United States SARS-CoV-2/human/USA/LA-BIE-043/2020
 C241T C1059T C3037T C10319T C14408T C16694T C21638T A23403G G25563T C27964T

EPI_ISL_463294 MT585099
 2020-04-06 2020-06-10
 United States SARS-CoV-2/human/USA/LA-BIE-046/2020
 C241T C1059T C3037T C14408T A23403G G25563T T26320C C27964T

EPI_ISL_463296 MT585101
 2020-04-06 2020-06-10
 United States SARS-CoV-2/human/USA/LA-BIE-048/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T

EPI_ISL_463299 MT585104
 2020-04-06 2020-06-10
 United States SARS-CoV-2/human/USA/LA-BIE-091/2020
 C241T C1059T C3037T C4321T C10319T C14408T G22344T A23403G G25563T C27964T

EPI_ISL_463906
 2020-04-06 2020-06-11
 Canada hCoV-19/Canada/QC_AE6/2020
 C241T C1059T C1150T C1223T C3037T C4886T C14408T G14829T A23403G A24782G G25563T G27561T C27964T

EPI_ISL_463908
 2020-04-06 2020-06-11
 Canada hCoV-19/Canada/QC_AE9/2020
 C241T C3037T C14408T C15324T A23403G C25433T

EPI_ISL_463948
 2020-04-06 2020-06-11
 Canada hCoV-19/Canada/QC_AU9/2020
 C241T C3037T C14408T C15324T A23403G C25433T

EPI_ISL_464001
 2020-04-06 2020-06-11
 Canada hCoV-19/Canada/ON-UHTC_0061/2020
 C241T C313T C1469T C3037T C14408T C14724T A23403G A27965T GGG28881AAC G29781T

EPI_ISL_464047
 2020-04-06 2020-06-11
 Canada hCoV-19/Canada/ON-UHTC_0036/2020
 C241T C676T C3037T C14408T A23403G T25430C T28130C GGG28881AAC

EPI_ISL_464067
 2020-04-06 2020-06-11
 Belgium hCoV-19/Belgium/MA-0406273/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T C18457T A23403G G25767T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_464069
 2020-04-06 2020-06-11
 Belgium hCoV-19/Belgium/WLM-0406275/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7267T C7564T T12001A C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_464072
 2020-04-06 2020-06-11
 Belgium hCoV-19/Belgium/LC-0406278/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C14980T C15324T A23403G A28765G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_464073
 2020-04-06 2020-06-11
 Belgium hCoV-19/Belgium/VSL-0407279/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2878T C3037T C4002T G10097A C13536T C14408T G18266T G18636T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_464079
 2020-04-06 2020-06-11
 Belgium hCoV-19/Belgium/rega-0406285/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A3859G G11083T C12513T C14805T T17247C G26144T A29598G G29690T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_466231
 2020-04-06 2020-06-11
 United Kingdom hCoV-19/England/20150041004/2020
 A215T C241T A1677T C3037T G3152A C14408T A23403G GGG28881AAC C29085T T29148C

EPI_ISL_466235
 2020-04-06 2020-06-11
 United Kingdom hCoV-19/England/20152054104/2020
 A2480G C2558T C7011T C8692T C8715T G11083T G11405A C12459Y C14805T G26144T C28869T

EPI_ISL_466246
 2020-04-06 2020-06-11
 United Kingdom hCoV-19/England/20154002504/2020
 C241T G2164A C3037T C11941Y C14408T C22802M A23403G G27506K GGG28881AAC

EPI_ISL_466252
 2020-04-06 2020-06-11
 United Kingdom hCoV-19/England/20154003804/2020
 C241T C3037T C14408T G18972T A23403G C27509Y GGG28881AAC

EPI_ISL_466275
 2020-04-06 2020-06-11
 United Kingdom hCoV-19/England/20154088104/2020
 G6392R T7030C C14805T T17247C G26144T

EPI_ISL_466325
 2020-04-06 2020-06-11
 United Kingdom hCoV-19/England/20156047804/2020
 C241T A2239G C3037T C12025T C14408T C15324T A23403G G28374A C29171T C29870A A29882G

EPI_ISL_467455
 2020-04-06 2020-06-14
 South Africa hCoV-19/South Africa/KRISP-0081/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T C16376T A23403G ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_468009
 2020-04-06 2020-06-16
 Australia hCoV-19/Australia/SAP027/2020
 ATTAAAGGT1- C241T C2416T C3037T C14408T A23403G G25563T

EPI_ISL_468459 MT628187
 2020-04-06 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1512/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- T898K T3142Y C4499M T5270Y G6694A T12486Y C12973T T13123W T13573W C14119T G28881T G29202S TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_468536 MT628259
 2020-04-06 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1607/2020
 ATT1- C4776T C8782T A16474R C17747T A17858G C18060T C27881Y G28086T T28144C

EPI_ISL_468537 MT628260
 2020-04-06 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1608/2020
 C4776T C8782T C17104T C17747T A17858G C18060T G28086T T28144C

EPI_ISL_468701
 2020-04-06 2020-06-17
 United States hCoV-19/USA/LA-BIE-001/2020
 C241T C1059T C3037T C10319T C14408T C18166T A23403G G25563T C27964T

EPI_ISL_468702
 2020-04-06 2020-06-17
 United States hCoV-19/USA/LA-BIE-002/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C1059T C3037T C10319T C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_468703
 2020-04-06 2020-06-17
 United States hCoV-19/USA/LA-BIE-003/2020
 C241T C1059T C3037T C10319T G11083T C14408T A23403G G25563T C27964T

EPI_ISL_468713
 2020-04-06 2020-06-17
 United States hCoV-19/USA/LA-BIE-023/2020
 C241T C1059T C3037T C10188T C14408T A23403G G25563T C27964T

EPI_ISL_468714
 2020-04-06 2020-06-17
 United States hCoV-19/USA/LA-BIE-025/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCT1- C241T G613A C1059T C3037T G4399T G12988T C14408T A23403G G25563T C27263T C27964T C29200T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_468715
 2020-04-06 2020-06-17
 United States hCoV-19/USA/LA-BIE-026/2020
 C241T T833C C1059T G2202T C3037T C8357T C14408T A23403G G25563T C27964T

EPI_ISL_469105
 2020-04-06 2020-06-17
 Singapore hCoV-19/Singapore/350/2020
 A3523R C6310A C6312A G11083T C13730T C19524T C23929T A27797G C28311T AAAAAAAAAAAA29892-

EPI_ISL_469113
 2020-04-06 2020-06-17
 Singapore hCoV-19/Singapore/358/2020
 C241T C3037T G6894T C14408T T22433Y A22623R A23403G G26589K GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_469114
 2020-04-06 2020-06-17
 Singapore hCoV-19/Singapore/359/2020
 C6310A C6312A C9559Y G11083T C13730T C19524T T22324Y C23185T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_469120
 2020-04-06 2020-06-17
 Singapore hCoV-19/Singapore/365/2020
 C6310A C6312A G11083T C13730T C19524T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_469274
 2020-04-06 2020-06-18
 Singapore hCoV-19/Singapore/72/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C6310A C6312A G11083T C13730T C19524T C21575Y C23185T C23929T C28311T TGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29829-

EPI_ISL_470833
 2020-04-06 2020-06-19
 Australia hCoV-19/Australia/WA15/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C241T C3037T A9301G A9409G C14408T A23403G CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_471183
 2020-04-06 2020-06-19
 United States hCoV-19/USA/WI-WSLH-200017/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471916
 2020-04-06 2020-06-23
 United Kingdom hCoV-19/England/EXET-136D18/2020
 C241T C3037T G3239T C14408T A23403G GGG28881AAC

EPI_ISL_471929
 2020-04-06 2020-06-23
 United Kingdom hCoV-19/England/EXET-136E9D/2020
 C241T C3037T G11083T C14408T A23403G GGG28881AAC

EPI_ISL_472450
 2020-04-06 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-15C1C5/2020
 ATTA1- C241T C1616T C3037T C14408T A23403G GGG28881AAC G29777T

EPI_ISL_473783
 2020-04-06 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB1063/2020
 C241T C3037T A3911G C14408T A23403G C26028T

EPI_ISL_474260
 2020-04-06 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-2AFA9/2020
 A1- C241T A883C C3037T C14408T C16289T C17550T A23403G G25429T

EPI_ISL_474935
 2020-04-06 2020-06-23
 Spain hCoV-19/Spain/Ogijares-COV003033/2020
 C241T C3037T G4255A C14408T G16537T A20268G A23403G T26301G

EPI_ISL_475153
 2020-04-06 2020-06-23
 Sweden hCoV-19/Sweden/20-50664/2020
 C241T C1059T A1399G C3037T G7936T C14408T G20002T A23403G G25563T

EPI_ISL_475154
 2020-04-06 2020-06-23
 Sweden hCoV-19/Sweden/20-50669/2020
 C241T C1059T A1399G C3037T G7936T C14408T A23403G G25563T G29202T

EPI_ISL_475155
 2020-04-06 2020-06-23
 Sweden hCoV-19/Sweden/20-50673/2020
 C241T C2706T C3037T C14408T A23403G G24858A C26447T GGG28881AAC C28887T

EPI_ISL_475537
 2020-04-06 2020-06-23
 Sweden hCoV-19/Sweden/20-06918/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25455T G25563T

EPI_ISL_475538
 2020-04-06 2020-06-23
 Sweden hCoV-19/Sweden/20-07012/2020
 C241T C3037T C12400T C14408T A19182G T19839C A23403G C24099T GGG28881AAC

EPI_ISL_475565
 2020-04-06 2020-06-23
 Sweden hCoV-19/Sweden/20-06911/2020
 C241T AAGTCATTT686- C1059T C3037T C14178T C14408T ATCCATTTT21975- A23403G G25563T

EPI_ISL_475614
 2020-04-06 2020-06-23
 United States hCoV-19/USA/CA-CSMC136/2020
 C241T C1059T C3037T G11083T C14408T A23403G G25563T G25906T

EPI_ISL_475616
 2020-04-06 2020-06-23
 United States hCoV-19/USA/CA-CSMC138/2020
 C241T C1059T C3037T C14408T G15908A C16230T A23403G G25563T

EPI_ISL_475621
 2020-04-06 2020-06-23
 United States hCoV-19/USA/CA-CSMC142/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_475622
 2020-04-06 2020-06-23
 United States hCoV-19/USA/CA-CSMC143/2020
 C241T C1059T C3037T C9967T C14408T A23403G G25563T C27964T

EPI_ISL_475663
 2020-04-06 2020-06-23
 United States hCoV-19/USA/CA-CSMC50/2020
 C241T C3037T G3860T T4711C C14408T A23403G A28032T GGG28881AAC

EPI_ISL_475664
 2020-04-06 2020-06-23
 United States hCoV-19/USA/CA-CSMC51/2020
 C841T C8782T C17747T A17858G C18060T C22313T T27051G T28144C C28708T

EPI_ISL_475665
 2020-04-06 2020-06-23
 United States hCoV-19/USA/CA-CSMC52/2020
 C241T G656T C1059T C3037T C3743T G3980T G12320T G13540T C14408T T15366C T19025A C20767T T22731C A23403G G25563T

EPI_ISL_475806
 2020-04-06 2020-06-25
 Austria hCoV-19/Austria/CeMM0346/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C14805T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475808
 2020-04-06 2020-06-25
 Austria hCoV-19/Austria/CeMM0349/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3563A C14408T A23403G GGG28881AAC C29296T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475810
 2020-04-06 2020-06-25
 Austria hCoV-19/Austria/CeMM0351/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1884T C3037T C14408T T16656A G18859T A23403G A26530G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475811
 2020-04-06 2020-06-25
 Austria hCoV-19/Austria/CeMM0352/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476499
 2020-04-06 2020-06-25
 Canada hCoV-19/Canada/QC_AC9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G C25433T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476500
 2020-04-06 2020-06-25
 Canada hCoV-19/Canada/QC_AD6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1150T C1223T C3037T C4886T C14408T G14829T A23403G A24782G G25563T G27561T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476828
 2020-04-06 2020-06-26
 Benin hCoV-19/Benin/1409/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T99K T104K C241Y C1059T C3037T C4296G T4463Y A9187R C14408T T17990K A18550M T21763C A23403G T23569Y G25563T C25688T C26681Y T26717W C29200Y TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_477196
 2020-04-06 2020-06-29
 Italy hCoV-19/Italy/IZSPB_4028/2020
 A1CCTCCCGGA C241T C3037T C14408T T16456C A23403G A29880C A29882C AAAAA29884TGGGG AAAAAAAAAAAAAA29890T

EPI_ISL_478404
 2020-04-06 2020-06-30
 United Kingdom hCoV-19/England/LOND-D4278/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C815T C3037T G12070T C14408T -18033T A23403G C26873T T27553C GGG28881AAC CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_478724
 2020-04-06 2020-06-30
 United Kingdom hCoV-19/England/NOTT-112064/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A7877G T11798C C14408T C16289T A19655G A23403G G25429T G28703T C29642T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478807
 2020-04-06 2020-06-30
 United Kingdom hCoV-19/England/OXON-AFB4E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T A1620T A2239G C3037T C12025T C14408T C15324T A17869G A23403G G28374A C29171T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_478971
 2020-04-06 2020-06-30
 United Kingdom hCoV-19/England/OXON-B0E7E/2020
 C241T C3037T C13730T C14408T A23403G G25429T

EPI_ISL_479580
 2020-04-06 2020-06-30
 Singapore hCoV-19/Singapore/502/2020
 C6310A C6312A C9438T G11083T C13620T C13730T C19524T C23929T T27588A C28311T AAAAAAAAAAAA29892-

EPI_ISL_479581
 2020-04-06 2020-06-30
 Singapore hCoV-19/Singapore/503/2020
 C6310A C6312A G11083T C13730T C19524T C23929T T27588A C28311T AAAAAAAAAAAA29892-

EPI_ISL_479760
 2020-04-06 2020-07-01
 United States hCoV-19/USA/FL-Miami-04_UMTL-96NV/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T AAGTCATTT686- C1059T G2808A C3037T T10387G C14408T A23403G G25563T A26433G AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_480102
 2020-04-06 2020-07-01
 Japan hCoV-19/Japan/PG-0436/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C823T C3037T C14408T A23403G T24295C GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480147
 2020-04-06 2020-07-01
 Japan hCoV-19/Japan/PG-0488/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G C25096T C25665T GGG28881AAC TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_480151
 2020-04-06 2020-07-01
 Japan hCoV-19/Japan/PG-0492/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480152
 2020-04-06 2020-07-01
 Japan hCoV-19/Japan/PG-0493/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C313T C3037T A4548G C6543T C11195T G12565T C14408T A23403G GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_480154
 2020-04-06 2020-07-01
 Japan hCoV-19/Japan/PG-0495/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACT1- C241T C313T C3037T C14408T A23403G GGG28881AAC AAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29812-

EPI_ISL_480155
 2020-04-06 2020-07-01
 Japan hCoV-19/Japan/PG-0496/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C6099T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480156
 2020-04-06 2020-07-01
 Japan hCoV-19/Japan/PG-0497/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480158
 2020-04-06 2020-07-01
 Japan hCoV-19/Japan/PG-0499/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T G11083T C14408T A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_480174
 2020-04-06 2020-07-01
 Japan hCoV-19/Japan/PG-0516/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C12915T C14408T A23403G G27670T GGG28881AAC TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_480175
 2020-04-06 2020-07-01
 Japan hCoV-19/Japan/PG-0517/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T C313T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480176
 2020-04-06 2020-07-01
 Japan hCoV-19/Japan/PG-0518/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_480217
 2020-04-06 2020-07-01
 Japan hCoV-19/Japan/PG-0576/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C13430T C14408T A23403G GGG28881AAC G29764T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480396 MT772563
 2020-04-06 2020-07-01
 United States SARS-CoV-2/human/USA/WI-UW-414/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T2116A G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481275 MT704129
 2020-04-06 2020-07-02
 United States SARS-CoV-2/human/USA/MD-MDH-0030/2020
 ATTAAAGGTTTATACC1- C21T C241T C1059T C1670T C3037T C10188T C11124T C14408T A23403G T24982C G25563T C27964T

EPI_ISL_481708
 2020-04-06 2020-07-03
 Finland hCoV-19/Finland/6A928SIIB/2020
 C241T G1244A C2416T C3037T C14408T C14937T A19674G A23403G G23611A G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481709
 2020-04-06 2020-07-03
 Finland hCoV-19/Finland/6A937SIIB/2020
 C241T C1059T C3037T A6519C G9314T C14408T G15907T A23403G G24368T G25563T G27163T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481710
 2020-04-06 2020-07-03
 Finland hCoV-19/Finland/6A953SIIB/2020
 C241T C1059T C3037T C14408T C15853T C16756T A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481711
 2020-04-06 2020-07-03
 Finland hCoV-19/Finland/6A959SIIC/2020
 C241T C2453T C3037T C14408T G22021T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481712
 2020-04-06 2020-07-03
 Finland hCoV-19/Finland/6A962SII